Multiple sequence alignment - TraesCS5D01G546500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G546500 chr5D 100.000 2318 0 0 1 2318 555048090 555050407 0.000000e+00 4281.0
1 TraesCS5D01G546500 chr5D 85.446 1491 160 28 155 1607 555064481 555065952 0.000000e+00 1498.0
2 TraesCS5D01G546500 chr5D 90.446 1099 77 7 961 2049 555490289 555491369 0.000000e+00 1423.0
3 TraesCS5D01G546500 chr5D 91.826 783 61 2 155 937 555503622 555504401 0.000000e+00 1088.0
4 TraesCS5D01G546500 chr5D 90.027 742 72 1 210 951 555489511 555490250 0.000000e+00 959.0
5 TraesCS5D01G546500 chr5D 81.008 1190 190 18 165 1321 555324200 555325386 0.000000e+00 913.0
6 TraesCS5D01G546500 chr5D 81.114 1149 184 19 163 1281 555909011 555910156 0.000000e+00 889.0
7 TraesCS5D01G546500 chr5D 79.747 1185 201 24 165 1314 555557779 555558959 0.000000e+00 822.0
8 TraesCS5D01G546500 chr5D 79.333 1200 209 25 165 1328 555638103 555639299 0.000000e+00 806.0
9 TraesCS5D01G546500 chr5D 85.266 733 98 7 210 938 495549524 495548798 0.000000e+00 747.0
10 TraesCS5D01G546500 chr5D 81.514 687 90 19 961 1629 555504456 555505123 4.390000e-147 531.0
11 TraesCS5D01G546500 chr5D 80.541 370 66 5 973 1341 495548733 495548369 1.750000e-71 279.0
12 TraesCS5D01G546500 chr5D 97.959 49 1 0 2055 2103 555491400 555491448 4.100000e-13 86.1
13 TraesCS5D01G546500 chr5D 100.000 35 0 0 2119 2153 555491446 555491480 5.350000e-07 65.8
14 TraesCS5D01G546500 chr5D 97.297 37 1 0 2060 2096 555926425 555926461 1.920000e-06 63.9
15 TraesCS5D01G546500 chr4A 81.818 1188 184 15 165 1321 613741854 613740668 0.000000e+00 968.0
16 TraesCS5D01G546500 chr5B 85.314 606 54 13 961 1563 695720380 695719807 5.510000e-166 593.0
17 TraesCS5D01G546500 chr5B 80.585 376 67 5 961 1332 695811310 695810937 3.770000e-73 285.0
18 TraesCS5D01G546500 chr5B 81.322 348 61 3 984 1328 695693665 695693319 1.750000e-71 279.0
19 TraesCS5D01G546500 chr5B 90.244 164 8 3 1663 1818 695719773 695719610 8.390000e-50 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G546500 chr5D 555048090 555050407 2317 False 4281.000 4281 100.0000 1 2318 1 chr5D.!!$F1 2317
1 TraesCS5D01G546500 chr5D 555064481 555065952 1471 False 1498.000 1498 85.4460 155 1607 1 chr5D.!!$F2 1452
2 TraesCS5D01G546500 chr5D 555324200 555325386 1186 False 913.000 913 81.0080 165 1321 1 chr5D.!!$F3 1156
3 TraesCS5D01G546500 chr5D 555909011 555910156 1145 False 889.000 889 81.1140 163 1281 1 chr5D.!!$F6 1118
4 TraesCS5D01G546500 chr5D 555557779 555558959 1180 False 822.000 822 79.7470 165 1314 1 chr5D.!!$F4 1149
5 TraesCS5D01G546500 chr5D 555503622 555505123 1501 False 809.500 1088 86.6700 155 1629 2 chr5D.!!$F9 1474
6 TraesCS5D01G546500 chr5D 555638103 555639299 1196 False 806.000 806 79.3330 165 1328 1 chr5D.!!$F5 1163
7 TraesCS5D01G546500 chr5D 555489511 555491480 1969 False 633.475 1423 94.6080 210 2153 4 chr5D.!!$F8 1943
8 TraesCS5D01G546500 chr5D 495548369 495549524 1155 True 513.000 747 82.9035 210 1341 2 chr5D.!!$R1 1131
9 TraesCS5D01G546500 chr4A 613740668 613741854 1186 True 968.000 968 81.8180 165 1321 1 chr4A.!!$R1 1156
10 TraesCS5D01G546500 chr5B 695719610 695720380 770 True 400.000 593 87.7790 961 1818 2 chr5B.!!$R3 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.405585 ACCCCACAGTCCTTGATTGG 59.594 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1837 0.246635 TGCGGCTAGAAACAGAGACC 59.753 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.957771 ATTCAATAAGCTCTCTGGTACCA 57.042 39.130 15.39 15.39 0.00 3.25
23 24 5.957771 TTCAATAAGCTCTCTGGTACCAT 57.042 39.130 16.75 0.39 0.00 3.55
24 25 5.957771 TCAATAAGCTCTCTGGTACCATT 57.042 39.130 16.75 8.26 0.00 3.16
25 26 5.918608 TCAATAAGCTCTCTGGTACCATTC 58.081 41.667 16.75 3.11 0.00 2.67
26 27 4.965200 ATAAGCTCTCTGGTACCATTCC 57.035 45.455 16.75 2.66 0.00 3.01
27 28 1.501582 AGCTCTCTGGTACCATTCCC 58.498 55.000 16.75 3.40 0.00 3.97
28 29 1.204146 GCTCTCTGGTACCATTCCCA 58.796 55.000 16.75 0.00 0.00 4.37
29 30 1.771255 GCTCTCTGGTACCATTCCCAT 59.229 52.381 16.75 0.00 0.00 4.00
30 31 2.972713 GCTCTCTGGTACCATTCCCATA 59.027 50.000 16.75 0.00 0.00 2.74
31 32 3.584848 GCTCTCTGGTACCATTCCCATAT 59.415 47.826 16.75 0.00 0.00 1.78
32 33 4.042187 GCTCTCTGGTACCATTCCCATATT 59.958 45.833 16.75 0.00 0.00 1.28
33 34 5.799213 CTCTCTGGTACCATTCCCATATTC 58.201 45.833 16.75 0.00 0.00 1.75
34 35 4.597507 TCTCTGGTACCATTCCCATATTCC 59.402 45.833 16.75 0.00 0.00 3.01
35 36 4.577096 TCTGGTACCATTCCCATATTCCT 58.423 43.478 16.75 0.00 0.00 3.36
36 37 4.981647 TCTGGTACCATTCCCATATTCCTT 59.018 41.667 16.75 0.00 0.00 3.36
37 38 5.060427 TGGTACCATTCCCATATTCCTTG 57.940 43.478 11.60 0.00 0.00 3.61
38 39 3.826729 GGTACCATTCCCATATTCCTTGC 59.173 47.826 7.15 0.00 0.00 4.01
39 40 2.962859 ACCATTCCCATATTCCTTGCC 58.037 47.619 0.00 0.00 0.00 4.52
40 41 2.247111 ACCATTCCCATATTCCTTGCCA 59.753 45.455 0.00 0.00 0.00 4.92
41 42 3.307506 CCATTCCCATATTCCTTGCCAA 58.692 45.455 0.00 0.00 0.00 4.52
42 43 3.070015 CCATTCCCATATTCCTTGCCAAC 59.930 47.826 0.00 0.00 0.00 3.77
43 44 2.452600 TCCCATATTCCTTGCCAACC 57.547 50.000 0.00 0.00 0.00 3.77
44 45 1.929494 TCCCATATTCCTTGCCAACCT 59.071 47.619 0.00 0.00 0.00 3.50
45 46 2.314549 TCCCATATTCCTTGCCAACCTT 59.685 45.455 0.00 0.00 0.00 3.50
46 47 3.529734 TCCCATATTCCTTGCCAACCTTA 59.470 43.478 0.00 0.00 0.00 2.69
47 48 3.636764 CCCATATTCCTTGCCAACCTTAC 59.363 47.826 0.00 0.00 0.00 2.34
48 49 4.277476 CCATATTCCTTGCCAACCTTACA 58.723 43.478 0.00 0.00 0.00 2.41
49 50 4.895297 CCATATTCCTTGCCAACCTTACAT 59.105 41.667 0.00 0.00 0.00 2.29
50 51 6.068010 CCATATTCCTTGCCAACCTTACATA 58.932 40.000 0.00 0.00 0.00 2.29
51 52 6.721208 CCATATTCCTTGCCAACCTTACATAT 59.279 38.462 0.00 0.00 0.00 1.78
52 53 7.233348 CCATATTCCTTGCCAACCTTACATATT 59.767 37.037 0.00 0.00 0.00 1.28
53 54 8.641541 CATATTCCTTGCCAACCTTACATATTT 58.358 33.333 0.00 0.00 0.00 1.40
54 55 5.913137 TCCTTGCCAACCTTACATATTTG 57.087 39.130 0.00 0.00 0.00 2.32
55 56 5.575157 TCCTTGCCAACCTTACATATTTGA 58.425 37.500 0.00 0.00 0.00 2.69
56 57 5.417580 TCCTTGCCAACCTTACATATTTGAC 59.582 40.000 0.00 0.00 0.00 3.18
57 58 5.418840 CCTTGCCAACCTTACATATTTGACT 59.581 40.000 0.00 0.00 0.00 3.41
58 59 6.601613 CCTTGCCAACCTTACATATTTGACTA 59.398 38.462 0.00 0.00 0.00 2.59
59 60 7.201732 CCTTGCCAACCTTACATATTTGACTAG 60.202 40.741 0.00 0.00 0.00 2.57
60 61 5.588648 TGCCAACCTTACATATTTGACTAGC 59.411 40.000 0.00 0.00 0.00 3.42
61 62 5.823045 GCCAACCTTACATATTTGACTAGCT 59.177 40.000 0.00 0.00 0.00 3.32
62 63 6.318900 GCCAACCTTACATATTTGACTAGCTT 59.681 38.462 0.00 0.00 0.00 3.74
63 64 7.679638 GCCAACCTTACATATTTGACTAGCTTG 60.680 40.741 0.00 0.00 0.00 4.01
64 65 7.552687 CCAACCTTACATATTTGACTAGCTTGA 59.447 37.037 1.04 0.00 0.00 3.02
65 66 8.946085 CAACCTTACATATTTGACTAGCTTGAA 58.054 33.333 1.04 0.00 0.00 2.69
66 67 8.494016 ACCTTACATATTTGACTAGCTTGAAC 57.506 34.615 1.04 0.00 0.00 3.18
67 68 7.553044 ACCTTACATATTTGACTAGCTTGAACC 59.447 37.037 1.04 0.00 0.00 3.62
68 69 7.770897 CCTTACATATTTGACTAGCTTGAACCT 59.229 37.037 1.04 0.00 0.00 3.50
69 70 8.718102 TTACATATTTGACTAGCTTGAACCTC 57.282 34.615 1.04 0.00 0.00 3.85
70 71 6.951971 ACATATTTGACTAGCTTGAACCTCT 58.048 36.000 1.04 0.00 0.00 3.69
71 72 7.044798 ACATATTTGACTAGCTTGAACCTCTC 58.955 38.462 1.04 0.00 0.00 3.20
72 73 4.955811 TTTGACTAGCTTGAACCTCTCA 57.044 40.909 1.04 0.00 0.00 3.27
73 74 5.489792 TTTGACTAGCTTGAACCTCTCAT 57.510 39.130 1.04 0.00 32.78 2.90
74 75 5.489792 TTGACTAGCTTGAACCTCTCATT 57.510 39.130 1.04 0.00 32.78 2.57
75 76 5.078411 TGACTAGCTTGAACCTCTCATTC 57.922 43.478 1.04 0.00 32.78 2.67
76 77 4.528206 TGACTAGCTTGAACCTCTCATTCA 59.472 41.667 1.04 0.00 32.78 2.57
77 78 5.012046 TGACTAGCTTGAACCTCTCATTCAA 59.988 40.000 1.04 0.68 42.37 2.69
78 79 6.059787 ACTAGCTTGAACCTCTCATTCAAT 57.940 37.500 1.04 0.00 43.31 2.57
79 80 7.093333 TGACTAGCTTGAACCTCTCATTCAATA 60.093 37.037 1.04 0.00 43.31 1.90
80 81 7.271511 ACTAGCTTGAACCTCTCATTCAATAG 58.728 38.462 1.04 4.29 43.31 1.73
81 82 6.059787 AGCTTGAACCTCTCATTCAATAGT 57.940 37.500 0.96 0.00 43.31 2.12
82 83 6.112058 AGCTTGAACCTCTCATTCAATAGTC 58.888 40.000 0.96 0.00 43.31 2.59
83 84 6.070309 AGCTTGAACCTCTCATTCAATAGTCT 60.070 38.462 0.96 0.00 43.31 3.24
84 85 7.124901 AGCTTGAACCTCTCATTCAATAGTCTA 59.875 37.037 0.96 0.00 43.31 2.59
85 86 7.437862 GCTTGAACCTCTCATTCAATAGTCTAG 59.562 40.741 0.96 0.00 43.31 2.43
86 87 7.962995 TGAACCTCTCATTCAATAGTCTAGT 57.037 36.000 0.00 0.00 33.16 2.57
87 88 9.475620 TTGAACCTCTCATTCAATAGTCTAGTA 57.524 33.333 0.00 0.00 40.32 1.82
88 89 9.126151 TGAACCTCTCATTCAATAGTCTAGTAG 57.874 37.037 0.00 0.00 33.16 2.57
89 90 8.472007 AACCTCTCATTCAATAGTCTAGTAGG 57.528 38.462 0.00 0.00 0.00 3.18
90 91 6.492087 ACCTCTCATTCAATAGTCTAGTAGGC 59.508 42.308 0.00 0.00 0.00 3.93
91 92 6.071616 CCTCTCATTCAATAGTCTAGTAGGCC 60.072 46.154 0.00 0.00 0.00 5.19
92 93 6.373759 TCTCATTCAATAGTCTAGTAGGCCA 58.626 40.000 5.01 0.00 0.00 5.36
93 94 6.839134 TCTCATTCAATAGTCTAGTAGGCCAA 59.161 38.462 5.01 0.00 0.00 4.52
94 95 7.344612 TCTCATTCAATAGTCTAGTAGGCCAAA 59.655 37.037 5.01 0.00 0.00 3.28
95 96 8.034313 TCATTCAATAGTCTAGTAGGCCAAAT 57.966 34.615 5.01 0.00 0.00 2.32
96 97 9.154632 TCATTCAATAGTCTAGTAGGCCAAATA 57.845 33.333 5.01 0.00 0.00 1.40
97 98 9.209175 CATTCAATAGTCTAGTAGGCCAAATAC 57.791 37.037 5.01 0.00 0.00 1.89
98 99 7.299246 TCAATAGTCTAGTAGGCCAAATACC 57.701 40.000 5.01 0.00 0.00 2.73
99 100 5.979288 ATAGTCTAGTAGGCCAAATACCG 57.021 43.478 5.01 0.00 0.00 4.02
100 101 2.963782 AGTCTAGTAGGCCAAATACCGG 59.036 50.000 5.01 0.00 0.00 5.28
101 102 2.961062 GTCTAGTAGGCCAAATACCGGA 59.039 50.000 9.46 0.00 0.00 5.14
102 103 3.005578 GTCTAGTAGGCCAAATACCGGAG 59.994 52.174 9.46 0.00 0.00 4.63
122 123 2.082140 GGGGGTGTTTTCTCAAACCT 57.918 50.000 0.00 0.00 41.60 3.50
123 124 1.961394 GGGGGTGTTTTCTCAAACCTC 59.039 52.381 0.00 0.00 41.60 3.85
124 125 2.661718 GGGGTGTTTTCTCAAACCTCA 58.338 47.619 0.00 0.00 41.60 3.86
125 126 2.361119 GGGGTGTTTTCTCAAACCTCAC 59.639 50.000 0.00 0.00 41.60 3.51
126 127 2.361119 GGGTGTTTTCTCAAACCTCACC 59.639 50.000 0.00 0.00 41.60 4.02
127 128 2.361119 GGTGTTTTCTCAAACCTCACCC 59.639 50.000 0.00 0.00 41.60 4.61
128 129 2.361119 GTGTTTTCTCAAACCTCACCCC 59.639 50.000 0.00 0.00 41.60 4.95
129 130 2.024846 TGTTTTCTCAAACCTCACCCCA 60.025 45.455 0.00 0.00 41.60 4.96
130 131 2.358322 TTTCTCAAACCTCACCCCAC 57.642 50.000 0.00 0.00 0.00 4.61
131 132 1.217916 TTCTCAAACCTCACCCCACA 58.782 50.000 0.00 0.00 0.00 4.17
132 133 0.764890 TCTCAAACCTCACCCCACAG 59.235 55.000 0.00 0.00 0.00 3.66
133 134 0.474184 CTCAAACCTCACCCCACAGT 59.526 55.000 0.00 0.00 0.00 3.55
134 135 0.472471 TCAAACCTCACCCCACAGTC 59.528 55.000 0.00 0.00 0.00 3.51
135 136 0.537371 CAAACCTCACCCCACAGTCC 60.537 60.000 0.00 0.00 0.00 3.85
136 137 0.697854 AAACCTCACCCCACAGTCCT 60.698 55.000 0.00 0.00 0.00 3.85
137 138 0.697854 AACCTCACCCCACAGTCCTT 60.698 55.000 0.00 0.00 0.00 3.36
138 139 1.376466 CCTCACCCCACAGTCCTTG 59.624 63.158 0.00 0.00 0.00 3.61
139 140 1.127567 CCTCACCCCACAGTCCTTGA 61.128 60.000 0.00 0.00 0.00 3.02
140 141 0.987294 CTCACCCCACAGTCCTTGAT 59.013 55.000 0.00 0.00 0.00 2.57
141 142 1.352352 CTCACCCCACAGTCCTTGATT 59.648 52.381 0.00 0.00 0.00 2.57
142 143 1.073763 TCACCCCACAGTCCTTGATTG 59.926 52.381 0.00 0.00 0.00 2.67
143 144 0.405585 ACCCCACAGTCCTTGATTGG 59.594 55.000 0.00 0.00 0.00 3.16
144 145 0.405585 CCCCACAGTCCTTGATTGGT 59.594 55.000 0.00 0.00 0.00 3.67
145 146 1.633432 CCCCACAGTCCTTGATTGGTA 59.367 52.381 0.00 0.00 0.00 3.25
146 147 2.041081 CCCCACAGTCCTTGATTGGTAA 59.959 50.000 0.00 0.00 0.00 2.85
147 148 3.309121 CCCCACAGTCCTTGATTGGTAAT 60.309 47.826 0.00 0.00 0.00 1.89
148 149 3.696051 CCCACAGTCCTTGATTGGTAATG 59.304 47.826 0.00 0.00 0.00 1.90
149 150 4.335416 CCACAGTCCTTGATTGGTAATGT 58.665 43.478 0.00 0.00 0.00 2.71
150 151 4.766891 CCACAGTCCTTGATTGGTAATGTT 59.233 41.667 0.00 0.00 0.00 2.71
151 152 5.106157 CCACAGTCCTTGATTGGTAATGTTC 60.106 44.000 0.00 0.00 0.00 3.18
152 153 4.695455 ACAGTCCTTGATTGGTAATGTTCG 59.305 41.667 0.00 0.00 0.00 3.95
153 154 4.695455 CAGTCCTTGATTGGTAATGTTCGT 59.305 41.667 0.00 0.00 0.00 3.85
159 160 6.036083 CCTTGATTGGTAATGTTCGTCTACAG 59.964 42.308 0.00 0.00 0.00 2.74
172 173 5.117355 TCGTCTACAGTGTTTACTTCCAG 57.883 43.478 0.00 0.00 34.07 3.86
204 205 1.135141 GCTTTTGGCGGCATTGTCATA 60.135 47.619 14.32 0.00 0.00 2.15
205 206 2.529151 CTTTTGGCGGCATTGTCATAC 58.471 47.619 14.32 0.00 0.00 2.39
369 370 2.493675 GGGATCTGGAAGCTTTGGAAAC 59.506 50.000 0.00 0.00 0.00 2.78
506 507 2.423577 ACACCGCAACCTGATAAAGAC 58.576 47.619 0.00 0.00 0.00 3.01
541 542 2.373169 TCCAACCTTGACTTCAGAGCAT 59.627 45.455 0.00 0.00 0.00 3.79
625 626 2.258109 GTCACCTAGGGTTCCTTGAGT 58.742 52.381 14.81 0.00 34.61 3.41
640 641 3.133542 CCTTGAGTGACTAGGCATCATGA 59.866 47.826 0.00 0.00 35.08 3.07
716 717 1.679139 CACTGTGACTTGAAGCCCAA 58.321 50.000 0.32 0.00 0.00 4.12
797 798 6.825721 AGGTTGATTCTAGATGACAATTCCAC 59.174 38.462 0.00 0.00 0.00 4.02
798 799 6.038714 GGTTGATTCTAGATGACAATTCCACC 59.961 42.308 0.00 0.00 0.00 4.61
849 850 0.909623 ACATGGCACCAGGTACCTAC 59.090 55.000 15.80 4.46 39.28 3.18
854 855 2.225445 TGGCACCAGGTACCTACTTAGT 60.225 50.000 15.80 4.53 0.00 2.24
875 876 9.515020 CTTAGTTTGCTCTTGTTATGTTTTCAA 57.485 29.630 0.00 0.00 0.00 2.69
1131 1171 0.320421 TTGACGGCCAGCTTCTACAC 60.320 55.000 2.24 0.00 0.00 2.90
1281 1322 3.511934 AGAAGATCAAAGCCGAGTACACT 59.488 43.478 0.00 0.00 0.00 3.55
1307 1354 5.721232 ACTGGTAGCAACTATGTCAAGTAC 58.279 41.667 0.00 0.00 0.00 2.73
1335 1382 2.680312 AGTGAACCGATCTCATGTGG 57.320 50.000 0.00 0.00 0.00 4.17
1337 1384 3.096852 AGTGAACCGATCTCATGTGGTA 58.903 45.455 0.00 0.00 33.45 3.25
1338 1385 3.131223 AGTGAACCGATCTCATGTGGTAG 59.869 47.826 0.00 0.00 33.45 3.18
1339 1386 2.159099 TGAACCGATCTCATGTGGTAGC 60.159 50.000 0.00 0.00 33.45 3.58
1340 1387 1.781786 ACCGATCTCATGTGGTAGCT 58.218 50.000 0.00 0.00 31.60 3.32
1341 1388 2.945456 ACCGATCTCATGTGGTAGCTA 58.055 47.619 0.00 0.00 31.60 3.32
1342 1389 2.623889 ACCGATCTCATGTGGTAGCTAC 59.376 50.000 15.88 15.88 31.60 3.58
1343 1390 2.887783 CCGATCTCATGTGGTAGCTACT 59.112 50.000 22.74 0.35 0.00 2.57
1344 1391 4.072839 CCGATCTCATGTGGTAGCTACTA 58.927 47.826 22.74 15.07 0.00 1.82
1345 1392 4.702612 CCGATCTCATGTGGTAGCTACTAT 59.297 45.833 22.74 12.27 0.00 2.12
1346 1393 5.392487 CCGATCTCATGTGGTAGCTACTATG 60.392 48.000 22.74 21.35 0.00 2.23
1347 1394 5.182190 CGATCTCATGTGGTAGCTACTATGT 59.818 44.000 22.74 7.58 0.00 2.29
1348 1395 5.774498 TCTCATGTGGTAGCTACTATGTG 57.226 43.478 22.74 21.00 0.00 3.21
1349 1396 4.038042 TCTCATGTGGTAGCTACTATGTGC 59.962 45.833 22.74 6.26 0.00 4.57
1350 1397 3.960755 TCATGTGGTAGCTACTATGTGCT 59.039 43.478 22.74 0.00 42.67 4.40
1448 1518 6.374333 GCAGGACTGAAATAAGTTGTATTGGA 59.626 38.462 3.00 0.00 0.00 3.53
1449 1519 7.094377 GCAGGACTGAAATAAGTTGTATTGGAA 60.094 37.037 3.00 0.00 0.00 3.53
1509 1585 2.260844 TTTGTTCTCTGGCTGTGAGG 57.739 50.000 0.00 0.00 32.78 3.86
1538 1615 1.067142 TCGTTCCCTTTCGGTCATGAG 60.067 52.381 0.00 0.00 0.00 2.90
1568 1645 4.103153 TGAACAAGACCAAAGAGAGGACAT 59.897 41.667 0.00 0.00 0.00 3.06
1574 1651 4.027437 GACCAAAGAGAGGACATAGGAGT 58.973 47.826 0.00 0.00 0.00 3.85
1576 1653 5.590818 ACCAAAGAGAGGACATAGGAGTAA 58.409 41.667 0.00 0.00 0.00 2.24
1650 1727 5.476599 TGGCATGCATAACTATATTTGGTCC 59.523 40.000 21.36 0.00 0.00 4.46
1656 1733 8.621532 TGCATAACTATATTTGGTCCTGATTC 57.378 34.615 0.00 0.00 0.00 2.52
1659 1736 9.442047 CATAACTATATTTGGTCCTGATTCTCC 57.558 37.037 0.00 0.00 0.00 3.71
1708 1785 3.126514 CCTTGCTATTGCTCTGACAGTTG 59.873 47.826 1.59 0.00 40.48 3.16
1711 1788 2.095532 GCTATTGCTCTGACAGTTGCAG 59.904 50.000 19.23 12.72 36.75 4.41
1743 1820 6.875726 TGAAATCTGAACATGACGAAAGAGAT 59.124 34.615 0.00 0.00 0.00 2.75
1745 1822 5.391312 TCTGAACATGACGAAAGAGATGA 57.609 39.130 0.00 0.00 0.00 2.92
1752 1837 3.664107 TGACGAAAGAGATGAACAAGGG 58.336 45.455 0.00 0.00 0.00 3.95
1753 1838 3.003480 GACGAAAGAGATGAACAAGGGG 58.997 50.000 0.00 0.00 0.00 4.79
1768 1853 1.574263 AGGGGTCTCTGTTTCTAGCC 58.426 55.000 0.00 0.00 0.00 3.93
1820 1905 5.547465 TGTGTTTGTACTGATACAGGAAGG 58.453 41.667 0.00 0.00 42.29 3.46
1824 1909 5.435686 TTGTACTGATACAGGAAGGCAAT 57.564 39.130 0.00 0.00 42.29 3.56
1842 1927 5.299279 AGGCAATATTGATTCAGTTTACCGG 59.701 40.000 19.73 0.00 0.00 5.28
1848 1933 0.255033 ATTCAGTTTACCGGGCCTCC 59.745 55.000 6.32 0.00 0.00 4.30
2013 2098 1.517832 GGTGGGAGATGAGGTCACG 59.482 63.158 0.00 0.00 0.00 4.35
2021 2106 0.602638 GATGAGGTCACGTGCCACAA 60.603 55.000 24.10 13.59 30.88 3.33
2023 2108 1.227556 GAGGTCACGTGCCACAACT 60.228 57.895 24.48 11.37 0.00 3.16
2068 2178 4.466370 TGGATTGGAGTACTACTGAACCTG 59.534 45.833 6.66 0.00 0.00 4.00
2100 2210 1.604604 TGGTTTAGGCTGTGCTGTTC 58.395 50.000 0.00 0.00 0.00 3.18
2101 2211 1.142870 TGGTTTAGGCTGTGCTGTTCT 59.857 47.619 0.00 0.00 0.00 3.01
2102 2212 1.807142 GGTTTAGGCTGTGCTGTTCTC 59.193 52.381 0.00 0.00 0.00 2.87
2103 2213 1.461127 GTTTAGGCTGTGCTGTTCTCG 59.539 52.381 0.00 0.00 0.00 4.04
2104 2214 0.670546 TTAGGCTGTGCTGTTCTCGC 60.671 55.000 0.00 0.00 0.00 5.03
2105 2215 1.815817 TAGGCTGTGCTGTTCTCGCA 61.816 55.000 0.00 0.00 34.52 5.10
2106 2216 2.675056 GGCTGTGCTGTTCTCGCAG 61.675 63.158 0.00 0.00 43.01 5.18
2107 2217 1.958205 GCTGTGCTGTTCTCGCAGT 60.958 57.895 5.61 0.00 42.35 4.40
2108 2218 1.895280 GCTGTGCTGTTCTCGCAGTC 61.895 60.000 5.61 0.00 42.35 3.51
2109 2219 1.612469 CTGTGCTGTTCTCGCAGTCG 61.612 60.000 0.00 0.00 38.19 4.18
2110 2220 2.734723 TGCTGTTCTCGCAGTCGC 60.735 61.111 0.00 0.00 38.65 5.19
2111 2221 2.734723 GCTGTTCTCGCAGTCGCA 60.735 61.111 0.00 0.00 38.65 5.10
2112 2222 2.724708 GCTGTTCTCGCAGTCGCAG 61.725 63.158 0.00 0.00 38.65 5.18
2113 2223 2.049156 TGTTCTCGCAGTCGCAGG 60.049 61.111 0.00 0.00 38.40 4.85
2114 2224 3.482783 GTTCTCGCAGTCGCAGGC 61.483 66.667 0.00 0.00 38.40 4.85
2115 2225 4.742201 TTCTCGCAGTCGCAGGCC 62.742 66.667 0.00 0.00 38.40 5.19
2158 2268 2.273449 CAGTGGTGGATGGGAGGC 59.727 66.667 0.00 0.00 0.00 4.70
2159 2269 2.204136 AGTGGTGGATGGGAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
2160 2270 2.273449 GTGGTGGATGGGAGGCAG 59.727 66.667 0.00 0.00 0.00 4.85
2161 2271 2.124768 TGGTGGATGGGAGGCAGA 59.875 61.111 0.00 0.00 0.00 4.26
2162 2272 1.308128 TGGTGGATGGGAGGCAGAT 60.308 57.895 0.00 0.00 0.00 2.90
2163 2273 1.348008 TGGTGGATGGGAGGCAGATC 61.348 60.000 0.00 0.00 0.00 2.75
2164 2274 1.070445 GTGGATGGGAGGCAGATCG 59.930 63.158 0.00 0.00 0.00 3.69
2165 2275 1.075301 TGGATGGGAGGCAGATCGA 60.075 57.895 0.00 0.00 0.00 3.59
2166 2276 0.690744 TGGATGGGAGGCAGATCGAA 60.691 55.000 0.00 0.00 0.00 3.71
2167 2277 0.034616 GGATGGGAGGCAGATCGAAG 59.965 60.000 0.00 0.00 0.00 3.79
2168 2278 0.034616 GATGGGAGGCAGATCGAAGG 59.965 60.000 0.00 0.00 0.00 3.46
2169 2279 1.414061 ATGGGAGGCAGATCGAAGGG 61.414 60.000 0.00 0.00 0.00 3.95
2170 2280 2.066999 GGGAGGCAGATCGAAGGGT 61.067 63.158 0.00 0.00 0.00 4.34
2171 2281 1.627297 GGGAGGCAGATCGAAGGGTT 61.627 60.000 0.00 0.00 0.00 4.11
2172 2282 0.462759 GGAGGCAGATCGAAGGGTTG 60.463 60.000 0.00 0.00 0.00 3.77
2173 2283 0.462759 GAGGCAGATCGAAGGGTTGG 60.463 60.000 0.00 0.00 0.00 3.77
2174 2284 0.909610 AGGCAGATCGAAGGGTTGGA 60.910 55.000 0.00 0.00 0.00 3.53
2175 2285 0.462759 GGCAGATCGAAGGGTTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
2176 2286 0.462759 GCAGATCGAAGGGTTGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
2177 2287 1.195115 CAGATCGAAGGGTTGGAGGA 58.805 55.000 0.00 0.00 0.00 3.71
2178 2288 1.765314 CAGATCGAAGGGTTGGAGGAT 59.235 52.381 0.00 0.00 0.00 3.24
2179 2289 1.765314 AGATCGAAGGGTTGGAGGATG 59.235 52.381 0.00 0.00 0.00 3.51
2180 2290 0.181350 ATCGAAGGGTTGGAGGATGC 59.819 55.000 0.00 0.00 0.00 3.91
2181 2291 1.815421 CGAAGGGTTGGAGGATGCG 60.815 63.158 0.00 0.00 0.00 4.73
2182 2292 1.452108 GAAGGGTTGGAGGATGCGG 60.452 63.158 0.00 0.00 0.00 5.69
2183 2293 1.910580 GAAGGGTTGGAGGATGCGGA 61.911 60.000 0.00 0.00 0.00 5.54
2184 2294 1.281925 AAGGGTTGGAGGATGCGGAT 61.282 55.000 0.00 0.00 0.00 4.18
2185 2295 1.526917 GGGTTGGAGGATGCGGATG 60.527 63.158 0.00 0.00 0.00 3.51
2186 2296 1.526887 GGTTGGAGGATGCGGATGA 59.473 57.895 0.00 0.00 0.00 2.92
2187 2297 0.815615 GGTTGGAGGATGCGGATGAC 60.816 60.000 0.00 0.00 0.00 3.06
2188 2298 0.107703 GTTGGAGGATGCGGATGACA 60.108 55.000 0.00 0.00 0.00 3.58
2189 2299 0.839277 TTGGAGGATGCGGATGACAT 59.161 50.000 0.00 0.00 0.00 3.06
2190 2300 0.394192 TGGAGGATGCGGATGACATC 59.606 55.000 6.91 6.91 42.62 3.06
2191 2301 0.683973 GGAGGATGCGGATGACATCT 59.316 55.000 14.95 0.00 42.88 2.90
2192 2302 1.071385 GGAGGATGCGGATGACATCTT 59.929 52.381 14.95 0.00 42.88 2.40
2193 2303 2.411904 GAGGATGCGGATGACATCTTC 58.588 52.381 14.95 7.75 42.88 2.87
2194 2304 1.764723 AGGATGCGGATGACATCTTCA 59.235 47.619 14.95 12.61 42.88 3.02
2195 2305 6.610395 GGAGGATGCGGATGACATCTTCAT 62.610 50.000 14.95 16.19 46.74 2.57
2206 2316 4.245660 TGACATCTTCATCAACTCGTTCC 58.754 43.478 0.00 0.00 0.00 3.62
2207 2317 4.245660 GACATCTTCATCAACTCGTTCCA 58.754 43.478 0.00 0.00 0.00 3.53
2208 2318 4.836825 ACATCTTCATCAACTCGTTCCAT 58.163 39.130 0.00 0.00 0.00 3.41
2209 2319 4.633126 ACATCTTCATCAACTCGTTCCATG 59.367 41.667 0.00 0.00 0.00 3.66
2210 2320 4.535526 TCTTCATCAACTCGTTCCATGA 57.464 40.909 0.00 0.00 0.00 3.07
2211 2321 4.893608 TCTTCATCAACTCGTTCCATGAA 58.106 39.130 0.00 10.80 32.36 2.57
2212 2322 4.690748 TCTTCATCAACTCGTTCCATGAAC 59.309 41.667 0.00 0.00 38.97 3.18
2213 2323 4.271696 TCATCAACTCGTTCCATGAACT 57.728 40.909 0.00 0.00 40.05 3.01
2214 2324 4.245660 TCATCAACTCGTTCCATGAACTC 58.754 43.478 0.00 0.00 40.05 3.01
2215 2325 2.672714 TCAACTCGTTCCATGAACTCG 58.327 47.619 0.00 0.00 40.05 4.18
2216 2326 1.726791 CAACTCGTTCCATGAACTCGG 59.273 52.381 0.00 0.00 40.05 4.63
2217 2327 0.246635 ACTCGTTCCATGAACTCGGG 59.753 55.000 0.00 0.00 40.05 5.14
2218 2328 0.460284 CTCGTTCCATGAACTCGGGG 60.460 60.000 0.00 0.00 40.05 5.73
2219 2329 2.106683 CGTTCCATGAACTCGGGGC 61.107 63.158 0.00 0.00 40.05 5.80
2220 2330 1.749258 GTTCCATGAACTCGGGGCC 60.749 63.158 0.00 0.00 39.23 5.80
2221 2331 2.978946 TTCCATGAACTCGGGGCCC 61.979 63.158 15.76 15.76 0.00 5.80
2222 2332 4.506255 CCATGAACTCGGGGCCCC 62.506 72.222 33.22 33.22 0.00 5.80
2223 2333 3.411517 CATGAACTCGGGGCCCCT 61.412 66.667 38.17 20.84 0.00 4.79
2224 2334 2.614013 ATGAACTCGGGGCCCCTT 60.614 61.111 38.17 26.17 0.00 3.95
2225 2335 2.983879 ATGAACTCGGGGCCCCTTG 61.984 63.158 38.17 30.04 0.00 3.61
2250 2360 4.517663 CCCCCACATGTTTGCTGA 57.482 55.556 0.00 0.00 0.00 4.26
2251 2361 2.980541 CCCCCACATGTTTGCTGAT 58.019 52.632 0.00 0.00 0.00 2.90
2252 2362 1.269012 CCCCCACATGTTTGCTGATT 58.731 50.000 0.00 0.00 0.00 2.57
2253 2363 1.624813 CCCCCACATGTTTGCTGATTT 59.375 47.619 0.00 0.00 0.00 2.17
2254 2364 2.613474 CCCCCACATGTTTGCTGATTTG 60.613 50.000 0.00 0.00 0.00 2.32
2255 2365 2.070783 CCCACATGTTTGCTGATTTGC 58.929 47.619 0.00 0.00 0.00 3.68
2256 2366 2.070783 CCACATGTTTGCTGATTTGCC 58.929 47.619 0.00 0.00 0.00 4.52
2257 2367 2.070783 CACATGTTTGCTGATTTGCCC 58.929 47.619 0.00 0.00 0.00 5.36
2258 2368 1.693062 ACATGTTTGCTGATTTGCCCA 59.307 42.857 0.00 0.00 0.00 5.36
2259 2369 2.070783 CATGTTTGCTGATTTGCCCAC 58.929 47.619 0.00 0.00 0.00 4.61
2260 2370 0.392336 TGTTTGCTGATTTGCCCACC 59.608 50.000 0.00 0.00 0.00 4.61
2261 2371 0.681175 GTTTGCTGATTTGCCCACCT 59.319 50.000 0.00 0.00 0.00 4.00
2262 2372 0.680618 TTTGCTGATTTGCCCACCTG 59.319 50.000 0.00 0.00 0.00 4.00
2263 2373 0.178967 TTGCTGATTTGCCCACCTGA 60.179 50.000 0.00 0.00 0.00 3.86
2264 2374 0.178967 TGCTGATTTGCCCACCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
2265 2375 0.968405 GCTGATTTGCCCACCTGAAA 59.032 50.000 0.00 0.00 0.00 2.69
2266 2376 1.067354 GCTGATTTGCCCACCTGAAAG 60.067 52.381 0.00 0.00 0.00 2.62
2267 2377 2.517959 CTGATTTGCCCACCTGAAAGA 58.482 47.619 0.00 0.00 34.07 2.52
2268 2378 3.094572 CTGATTTGCCCACCTGAAAGAT 58.905 45.455 0.00 0.00 34.07 2.40
2269 2379 2.827322 TGATTTGCCCACCTGAAAGATG 59.173 45.455 0.00 0.00 34.07 2.90
2280 2390 6.132791 CACCTGAAAGATGGATCAAAGATG 57.867 41.667 0.00 0.00 34.07 2.90
2281 2391 5.884232 CACCTGAAAGATGGATCAAAGATGA 59.116 40.000 0.00 0.00 36.36 2.92
2282 2392 6.376299 CACCTGAAAGATGGATCAAAGATGAA 59.624 38.462 0.00 0.00 35.66 2.57
2283 2393 6.950041 ACCTGAAAGATGGATCAAAGATGAAA 59.050 34.615 0.00 0.00 35.66 2.69
2284 2394 7.618512 ACCTGAAAGATGGATCAAAGATGAAAT 59.381 33.333 0.00 0.00 35.66 2.17
2285 2395 9.128404 CCTGAAAGATGGATCAAAGATGAAATA 57.872 33.333 0.00 0.00 35.66 1.40
2286 2396 9.947669 CTGAAAGATGGATCAAAGATGAAATAC 57.052 33.333 0.00 0.00 35.66 1.89
2287 2397 8.615211 TGAAAGATGGATCAAAGATGAAATACG 58.385 33.333 0.00 0.00 39.49 3.06
2288 2398 8.511604 AAAGATGGATCAAAGATGAAATACGT 57.488 30.769 0.00 0.00 39.49 3.57
2289 2399 7.488187 AGATGGATCAAAGATGAAATACGTG 57.512 36.000 0.00 0.00 39.49 4.49
2290 2400 7.275183 AGATGGATCAAAGATGAAATACGTGA 58.725 34.615 0.00 0.00 39.49 4.35
2291 2401 7.770433 AGATGGATCAAAGATGAAATACGTGAA 59.230 33.333 0.00 0.00 39.49 3.18
2292 2402 7.864108 TGGATCAAAGATGAAATACGTGAAT 57.136 32.000 0.00 0.00 39.49 2.57
2293 2403 8.279970 TGGATCAAAGATGAAATACGTGAATT 57.720 30.769 0.00 0.00 39.49 2.17
2294 2404 8.739039 TGGATCAAAGATGAAATACGTGAATTT 58.261 29.630 0.00 0.00 39.49 1.82
2295 2405 9.573133 GGATCAAAGATGAAATACGTGAATTTT 57.427 29.630 0.00 0.00 39.49 1.82
2298 2408 9.958234 TCAAAGATGAAATACGTGAATTTTCAA 57.042 25.926 16.35 6.10 41.26 2.69
2301 2411 8.955061 AGATGAAATACGTGAATTTTCAAGTG 57.045 30.769 18.16 5.00 46.59 3.16
2302 2412 8.567948 AGATGAAATACGTGAATTTTCAAGTGT 58.432 29.630 18.16 11.16 46.59 3.55
2303 2413 7.906611 TGAAATACGTGAATTTTCAAGTGTG 57.093 32.000 18.16 0.95 46.59 3.82
2304 2414 6.915300 TGAAATACGTGAATTTTCAAGTGTGG 59.085 34.615 18.16 0.00 46.59 4.17
2305 2415 6.627395 AATACGTGAATTTTCAAGTGTGGA 57.373 33.333 18.16 3.03 46.59 4.02
2306 2416 4.974368 ACGTGAATTTTCAAGTGTGGAA 57.026 36.364 10.42 0.00 45.71 3.53
2307 2417 5.317733 ACGTGAATTTTCAAGTGTGGAAA 57.682 34.783 10.42 0.00 45.71 3.13
2308 2418 5.339990 ACGTGAATTTTCAAGTGTGGAAAG 58.660 37.500 10.42 0.00 45.71 2.62
2309 2419 4.207019 CGTGAATTTTCAAGTGTGGAAAGC 59.793 41.667 0.00 0.00 35.64 3.51
2310 2420 5.108517 GTGAATTTTCAAGTGTGGAAAGCA 58.891 37.500 0.00 0.00 35.64 3.91
2311 2421 5.580297 GTGAATTTTCAAGTGTGGAAAGCAA 59.420 36.000 0.00 0.00 35.64 3.91
2312 2422 5.811613 TGAATTTTCAAGTGTGGAAAGCAAG 59.188 36.000 0.00 0.00 35.64 4.01
2313 2423 2.869233 TTCAAGTGTGGAAAGCAAGC 57.131 45.000 0.00 0.00 0.00 4.01
2314 2424 1.032014 TCAAGTGTGGAAAGCAAGCC 58.968 50.000 0.00 0.00 0.00 4.35
2315 2425 0.032540 CAAGTGTGGAAAGCAAGCCC 59.967 55.000 0.00 0.00 0.00 5.19
2316 2426 0.106015 AAGTGTGGAAAGCAAGCCCT 60.106 50.000 0.00 0.00 0.00 5.19
2317 2427 0.825010 AGTGTGGAAAGCAAGCCCTG 60.825 55.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.957771 TGGTACCAGAGAGCTTATTGAAT 57.042 39.130 11.60 0.00 0.00 2.57
1 2 5.957771 ATGGTACCAGAGAGCTTATTGAA 57.042 39.130 21.41 0.00 0.00 2.69
2 3 5.163301 GGAATGGTACCAGAGAGCTTATTGA 60.163 44.000 21.41 0.00 0.00 2.57
3 4 5.059833 GGAATGGTACCAGAGAGCTTATTG 58.940 45.833 21.41 0.00 0.00 1.90
4 5 4.103311 GGGAATGGTACCAGAGAGCTTATT 59.897 45.833 21.41 6.01 0.00 1.40
5 6 3.648545 GGGAATGGTACCAGAGAGCTTAT 59.351 47.826 21.41 0.00 0.00 1.73
6 7 3.039011 GGGAATGGTACCAGAGAGCTTA 58.961 50.000 21.41 0.00 0.00 3.09
7 8 1.840635 GGGAATGGTACCAGAGAGCTT 59.159 52.381 21.41 8.38 0.00 3.74
8 9 1.273838 TGGGAATGGTACCAGAGAGCT 60.274 52.381 21.41 0.00 31.92 4.09
9 10 1.204146 TGGGAATGGTACCAGAGAGC 58.796 55.000 21.41 7.17 31.92 4.09
10 11 5.280215 GGAATATGGGAATGGTACCAGAGAG 60.280 48.000 21.41 0.00 40.67 3.20
11 12 4.597507 GGAATATGGGAATGGTACCAGAGA 59.402 45.833 21.41 2.59 40.67 3.10
12 13 4.599241 AGGAATATGGGAATGGTACCAGAG 59.401 45.833 21.41 0.00 40.67 3.35
13 14 4.577096 AGGAATATGGGAATGGTACCAGA 58.423 43.478 21.41 0.00 40.67 3.86
14 15 5.072741 CAAGGAATATGGGAATGGTACCAG 58.927 45.833 21.41 0.00 40.67 4.00
15 16 4.691376 GCAAGGAATATGGGAATGGTACCA 60.691 45.833 18.99 18.99 41.76 3.25
16 17 3.826729 GCAAGGAATATGGGAATGGTACC 59.173 47.826 4.43 4.43 0.00 3.34
17 18 3.826729 GGCAAGGAATATGGGAATGGTAC 59.173 47.826 0.00 0.00 0.00 3.34
18 19 3.465210 TGGCAAGGAATATGGGAATGGTA 59.535 43.478 0.00 0.00 0.00 3.25
19 20 2.247111 TGGCAAGGAATATGGGAATGGT 59.753 45.455 0.00 0.00 0.00 3.55
20 21 2.961510 TGGCAAGGAATATGGGAATGG 58.038 47.619 0.00 0.00 0.00 3.16
21 22 3.070015 GGTTGGCAAGGAATATGGGAATG 59.930 47.826 0.00 0.00 0.00 2.67
22 23 3.051880 AGGTTGGCAAGGAATATGGGAAT 60.052 43.478 0.00 0.00 0.00 3.01
23 24 2.314549 AGGTTGGCAAGGAATATGGGAA 59.685 45.455 0.00 0.00 0.00 3.97
24 25 1.929494 AGGTTGGCAAGGAATATGGGA 59.071 47.619 0.00 0.00 0.00 4.37
25 26 2.459555 AGGTTGGCAAGGAATATGGG 57.540 50.000 0.00 0.00 0.00 4.00
26 27 4.277476 TGTAAGGTTGGCAAGGAATATGG 58.723 43.478 0.00 0.00 0.00 2.74
27 28 7.765695 ATATGTAAGGTTGGCAAGGAATATG 57.234 36.000 0.00 0.00 0.00 1.78
28 29 8.641541 CAAATATGTAAGGTTGGCAAGGAATAT 58.358 33.333 0.00 0.00 0.00 1.28
29 30 7.836685 TCAAATATGTAAGGTTGGCAAGGAATA 59.163 33.333 0.00 0.00 0.00 1.75
30 31 6.667414 TCAAATATGTAAGGTTGGCAAGGAAT 59.333 34.615 0.00 0.00 0.00 3.01
31 32 6.013379 TCAAATATGTAAGGTTGGCAAGGAA 58.987 36.000 0.00 0.00 0.00 3.36
32 33 5.417580 GTCAAATATGTAAGGTTGGCAAGGA 59.582 40.000 0.00 0.00 0.00 3.36
33 34 5.418840 AGTCAAATATGTAAGGTTGGCAAGG 59.581 40.000 0.00 0.00 0.00 3.61
34 35 6.515272 AGTCAAATATGTAAGGTTGGCAAG 57.485 37.500 0.00 0.00 0.00 4.01
35 36 6.094881 GCTAGTCAAATATGTAAGGTTGGCAA 59.905 38.462 0.00 0.00 0.00 4.52
36 37 5.588648 GCTAGTCAAATATGTAAGGTTGGCA 59.411 40.000 0.00 0.00 0.00 4.92
37 38 5.823045 AGCTAGTCAAATATGTAAGGTTGGC 59.177 40.000 0.00 0.00 0.00 4.52
38 39 7.552687 TCAAGCTAGTCAAATATGTAAGGTTGG 59.447 37.037 10.38 0.00 38.33 3.77
39 40 8.492673 TCAAGCTAGTCAAATATGTAAGGTTG 57.507 34.615 0.00 0.00 38.68 3.77
40 41 8.947115 GTTCAAGCTAGTCAAATATGTAAGGTT 58.053 33.333 0.00 0.00 0.00 3.50
41 42 7.553044 GGTTCAAGCTAGTCAAATATGTAAGGT 59.447 37.037 0.00 0.00 0.00 3.50
42 43 7.770897 AGGTTCAAGCTAGTCAAATATGTAAGG 59.229 37.037 0.00 0.00 0.00 2.69
43 44 8.723942 AGGTTCAAGCTAGTCAAATATGTAAG 57.276 34.615 0.00 0.00 0.00 2.34
44 45 8.540388 AGAGGTTCAAGCTAGTCAAATATGTAA 58.460 33.333 0.00 0.00 0.00 2.41
45 46 8.079211 AGAGGTTCAAGCTAGTCAAATATGTA 57.921 34.615 0.00 0.00 0.00 2.29
46 47 6.951971 AGAGGTTCAAGCTAGTCAAATATGT 58.048 36.000 0.00 0.00 0.00 2.29
47 48 7.044181 TGAGAGGTTCAAGCTAGTCAAATATG 58.956 38.462 0.00 0.00 31.34 1.78
48 49 7.187824 TGAGAGGTTCAAGCTAGTCAAATAT 57.812 36.000 0.00 0.00 31.34 1.28
49 50 6.605471 TGAGAGGTTCAAGCTAGTCAAATA 57.395 37.500 0.00 0.00 31.34 1.40
50 51 5.489792 TGAGAGGTTCAAGCTAGTCAAAT 57.510 39.130 0.00 0.00 31.34 2.32
51 52 4.955811 TGAGAGGTTCAAGCTAGTCAAA 57.044 40.909 0.00 0.00 31.34 2.69
52 53 5.012046 TGAATGAGAGGTTCAAGCTAGTCAA 59.988 40.000 5.46 0.00 39.77 3.18
53 54 4.528206 TGAATGAGAGGTTCAAGCTAGTCA 59.472 41.667 4.09 4.09 39.77 3.41
54 55 5.078411 TGAATGAGAGGTTCAAGCTAGTC 57.922 43.478 0.00 0.00 39.77 2.59
55 56 5.489792 TTGAATGAGAGGTTCAAGCTAGT 57.510 39.130 0.00 0.00 39.81 2.57
56 57 7.271511 ACTATTGAATGAGAGGTTCAAGCTAG 58.728 38.462 7.29 7.29 45.54 3.42
57 58 7.124901 AGACTATTGAATGAGAGGTTCAAGCTA 59.875 37.037 7.29 0.00 45.54 3.32
58 59 6.059787 ACTATTGAATGAGAGGTTCAAGCT 57.940 37.500 7.29 0.00 45.54 3.74
59 60 6.112058 AGACTATTGAATGAGAGGTTCAAGC 58.888 40.000 7.29 0.00 45.54 4.01
60 61 8.474025 ACTAGACTATTGAATGAGAGGTTCAAG 58.526 37.037 0.00 0.00 45.54 3.02
61 62 8.367660 ACTAGACTATTGAATGAGAGGTTCAA 57.632 34.615 0.00 4.06 46.16 2.69
62 63 7.962995 ACTAGACTATTGAATGAGAGGTTCA 57.037 36.000 0.00 0.00 40.85 3.18
63 64 8.573035 CCTACTAGACTATTGAATGAGAGGTTC 58.427 40.741 0.00 0.00 0.00 3.62
64 65 7.014808 GCCTACTAGACTATTGAATGAGAGGTT 59.985 40.741 0.00 0.00 0.00 3.50
65 66 6.492087 GCCTACTAGACTATTGAATGAGAGGT 59.508 42.308 0.00 0.00 0.00 3.85
66 67 6.071616 GGCCTACTAGACTATTGAATGAGAGG 60.072 46.154 0.00 0.00 0.00 3.69
67 68 6.491745 TGGCCTACTAGACTATTGAATGAGAG 59.508 42.308 3.32 0.00 0.00 3.20
68 69 6.373759 TGGCCTACTAGACTATTGAATGAGA 58.626 40.000 3.32 0.00 0.00 3.27
69 70 6.656632 TGGCCTACTAGACTATTGAATGAG 57.343 41.667 3.32 0.00 0.00 2.90
70 71 7.432148 TTTGGCCTACTAGACTATTGAATGA 57.568 36.000 3.32 0.00 0.00 2.57
71 72 9.209175 GTATTTGGCCTACTAGACTATTGAATG 57.791 37.037 3.32 0.00 0.00 2.67
72 73 8.376270 GGTATTTGGCCTACTAGACTATTGAAT 58.624 37.037 3.32 0.00 0.00 2.57
73 74 7.470981 CGGTATTTGGCCTACTAGACTATTGAA 60.471 40.741 3.32 0.00 0.00 2.69
74 75 6.015688 CGGTATTTGGCCTACTAGACTATTGA 60.016 42.308 3.32 0.00 0.00 2.57
75 76 6.157211 CGGTATTTGGCCTACTAGACTATTG 58.843 44.000 3.32 0.00 0.00 1.90
76 77 5.245526 CCGGTATTTGGCCTACTAGACTATT 59.754 44.000 3.32 0.00 0.00 1.73
77 78 4.771054 CCGGTATTTGGCCTACTAGACTAT 59.229 45.833 3.32 0.00 0.00 2.12
78 79 4.141181 TCCGGTATTTGGCCTACTAGACTA 60.141 45.833 3.32 0.00 0.00 2.59
79 80 2.963782 CCGGTATTTGGCCTACTAGACT 59.036 50.000 3.32 0.00 0.00 3.24
80 81 2.961062 TCCGGTATTTGGCCTACTAGAC 59.039 50.000 3.32 0.00 0.00 2.59
81 82 3.228453 CTCCGGTATTTGGCCTACTAGA 58.772 50.000 3.32 0.00 0.00 2.43
82 83 2.299297 CCTCCGGTATTTGGCCTACTAG 59.701 54.545 3.32 0.00 0.00 2.57
83 84 2.322658 CCTCCGGTATTTGGCCTACTA 58.677 52.381 3.32 0.00 0.00 1.82
84 85 1.129058 CCTCCGGTATTTGGCCTACT 58.871 55.000 3.32 0.00 0.00 2.57
85 86 0.108019 CCCTCCGGTATTTGGCCTAC 59.892 60.000 3.32 0.00 0.00 3.18
86 87 1.057851 CCCCTCCGGTATTTGGCCTA 61.058 60.000 3.32 0.00 0.00 3.93
87 88 2.383601 CCCCTCCGGTATTTGGCCT 61.384 63.158 3.32 0.00 0.00 5.19
88 89 2.194868 CCCCTCCGGTATTTGGCC 59.805 66.667 0.00 0.00 0.00 5.36
89 90 2.194868 CCCCCTCCGGTATTTGGC 59.805 66.667 0.00 0.00 0.00 4.52
103 104 1.961394 GAGGTTTGAGAAAACACCCCC 59.039 52.381 3.96 0.00 34.46 5.40
104 105 2.361119 GTGAGGTTTGAGAAAACACCCC 59.639 50.000 3.96 0.00 34.46 4.95
105 106 2.361119 GGTGAGGTTTGAGAAAACACCC 59.639 50.000 0.00 0.00 39.91 4.61
106 107 2.361119 GGGTGAGGTTTGAGAAAACACC 59.639 50.000 0.00 0.00 43.46 4.16
107 108 2.361119 GGGGTGAGGTTTGAGAAAACAC 59.639 50.000 3.96 0.00 34.46 3.32
108 109 2.024846 TGGGGTGAGGTTTGAGAAAACA 60.025 45.455 3.96 0.00 34.46 2.83
109 110 2.361119 GTGGGGTGAGGTTTGAGAAAAC 59.639 50.000 0.00 0.00 0.00 2.43
110 111 2.024846 TGTGGGGTGAGGTTTGAGAAAA 60.025 45.455 0.00 0.00 0.00 2.29
111 112 1.566703 TGTGGGGTGAGGTTTGAGAAA 59.433 47.619 0.00 0.00 0.00 2.52
112 113 1.142870 CTGTGGGGTGAGGTTTGAGAA 59.857 52.381 0.00 0.00 0.00 2.87
113 114 0.764890 CTGTGGGGTGAGGTTTGAGA 59.235 55.000 0.00 0.00 0.00 3.27
114 115 0.474184 ACTGTGGGGTGAGGTTTGAG 59.526 55.000 0.00 0.00 0.00 3.02
115 116 0.472471 GACTGTGGGGTGAGGTTTGA 59.528 55.000 0.00 0.00 0.00 2.69
116 117 0.537371 GGACTGTGGGGTGAGGTTTG 60.537 60.000 0.00 0.00 0.00 2.93
117 118 0.697854 AGGACTGTGGGGTGAGGTTT 60.698 55.000 0.00 0.00 0.00 3.27
118 119 0.697854 AAGGACTGTGGGGTGAGGTT 60.698 55.000 0.00 0.00 0.00 3.50
119 120 1.073706 AAGGACTGTGGGGTGAGGT 60.074 57.895 0.00 0.00 0.00 3.85
120 121 1.127567 TCAAGGACTGTGGGGTGAGG 61.128 60.000 0.00 0.00 0.00 3.86
121 122 0.987294 ATCAAGGACTGTGGGGTGAG 59.013 55.000 0.00 0.00 0.00 3.51
122 123 1.073763 CAATCAAGGACTGTGGGGTGA 59.926 52.381 0.00 0.00 0.00 4.02
123 124 1.538047 CAATCAAGGACTGTGGGGTG 58.462 55.000 0.00 0.00 0.00 4.61
124 125 0.405585 CCAATCAAGGACTGTGGGGT 59.594 55.000 0.00 0.00 0.00 4.95
125 126 0.405585 ACCAATCAAGGACTGTGGGG 59.594 55.000 0.00 0.00 33.43 4.96
126 127 3.433306 TTACCAATCAAGGACTGTGGG 57.567 47.619 0.00 0.00 33.43 4.61
127 128 4.335416 ACATTACCAATCAAGGACTGTGG 58.665 43.478 0.00 0.00 35.39 4.17
128 129 5.390885 CGAACATTACCAATCAAGGACTGTG 60.391 44.000 0.00 0.00 0.00 3.66
129 130 4.695455 CGAACATTACCAATCAAGGACTGT 59.305 41.667 0.00 0.00 0.00 3.55
130 131 4.695455 ACGAACATTACCAATCAAGGACTG 59.305 41.667 0.00 0.00 0.00 3.51
131 132 4.906618 ACGAACATTACCAATCAAGGACT 58.093 39.130 0.00 0.00 0.00 3.85
132 133 4.935808 AGACGAACATTACCAATCAAGGAC 59.064 41.667 0.00 0.00 0.00 3.85
133 134 5.160607 AGACGAACATTACCAATCAAGGA 57.839 39.130 0.00 0.00 0.00 3.36
134 135 5.872617 TGTAGACGAACATTACCAATCAAGG 59.127 40.000 0.00 0.00 0.00 3.61
135 136 6.590292 ACTGTAGACGAACATTACCAATCAAG 59.410 38.462 0.00 0.00 0.00 3.02
136 137 6.367695 CACTGTAGACGAACATTACCAATCAA 59.632 38.462 0.00 0.00 0.00 2.57
137 138 5.867174 CACTGTAGACGAACATTACCAATCA 59.133 40.000 0.00 0.00 0.00 2.57
138 139 5.867716 ACACTGTAGACGAACATTACCAATC 59.132 40.000 0.00 0.00 0.00 2.67
139 140 5.790593 ACACTGTAGACGAACATTACCAAT 58.209 37.500 0.00 0.00 0.00 3.16
140 141 5.204409 ACACTGTAGACGAACATTACCAA 57.796 39.130 0.00 0.00 0.00 3.67
141 142 4.859304 ACACTGTAGACGAACATTACCA 57.141 40.909 0.00 0.00 0.00 3.25
142 143 6.865205 AGTAAACACTGTAGACGAACATTACC 59.135 38.462 0.00 0.00 28.25 2.85
143 144 7.864307 AGTAAACACTGTAGACGAACATTAC 57.136 36.000 0.00 0.00 0.00 1.89
144 145 7.596248 GGAAGTAAACACTGTAGACGAACATTA 59.404 37.037 0.00 0.00 0.00 1.90
145 146 6.423001 GGAAGTAAACACTGTAGACGAACATT 59.577 38.462 0.00 0.00 0.00 2.71
146 147 5.924825 GGAAGTAAACACTGTAGACGAACAT 59.075 40.000 0.00 0.00 0.00 2.71
147 148 5.163530 TGGAAGTAAACACTGTAGACGAACA 60.164 40.000 0.00 0.00 0.00 3.18
148 149 5.284079 TGGAAGTAAACACTGTAGACGAAC 58.716 41.667 0.00 0.00 0.00 3.95
149 150 5.518848 TGGAAGTAAACACTGTAGACGAA 57.481 39.130 0.00 0.00 0.00 3.85
150 151 4.558095 GCTGGAAGTAAACACTGTAGACGA 60.558 45.833 0.00 0.00 35.30 4.20
151 152 3.673809 GCTGGAAGTAAACACTGTAGACG 59.326 47.826 0.00 0.00 35.30 4.18
152 153 4.448060 GTGCTGGAAGTAAACACTGTAGAC 59.552 45.833 0.00 0.00 35.30 2.59
153 154 4.344102 AGTGCTGGAAGTAAACACTGTAGA 59.656 41.667 0.00 0.00 39.97 2.59
159 160 3.202906 TGTGAGTGCTGGAAGTAAACAC 58.797 45.455 0.00 0.00 37.37 3.32
172 173 2.599659 GCCAAAAGCTAATGTGAGTGC 58.400 47.619 0.00 0.00 38.99 4.40
194 195 8.848474 ACATAGGTATAAAGGTATGACAATGC 57.152 34.615 0.00 0.00 0.00 3.56
369 370 2.408050 CTCAGTTGTCCCTTGAAGACG 58.592 52.381 0.00 0.00 37.04 4.18
506 507 2.951642 AGGTTGGAACATGTGTTGAGTG 59.048 45.455 0.00 0.00 39.30 3.51
541 542 3.694043 TGGCATGTACTGAAGCACTAA 57.306 42.857 0.00 0.00 0.00 2.24
625 626 4.184079 CATCGATCATGATGCCTAGTCA 57.816 45.455 14.30 0.00 39.33 3.41
640 641 3.071457 TCCATTGCCATAGACACATCGAT 59.929 43.478 0.00 0.00 0.00 3.59
797 798 0.887836 AGGCATGCTCGCACATATGG 60.888 55.000 18.92 0.00 0.00 2.74
798 799 0.237498 CAGGCATGCTCGCACATATG 59.763 55.000 18.92 0.00 0.00 1.78
849 850 9.515020 TTGAAAACATAACAAGAGCAAACTAAG 57.485 29.630 0.00 0.00 0.00 2.18
901 907 9.214957 CATATTGTTTTAGGTGTAGACAGAACA 57.785 33.333 0.00 0.00 0.00 3.18
902 908 8.665685 CCATATTGTTTTAGGTGTAGACAGAAC 58.334 37.037 0.00 0.00 0.00 3.01
956 967 5.891551 TCACTTTTCCTTGAGGCTTTTTACT 59.108 36.000 0.00 0.00 34.44 2.24
957 968 5.977725 GTCACTTTTCCTTGAGGCTTTTTAC 59.022 40.000 0.00 0.00 34.44 2.01
959 970 4.440112 CGTCACTTTTCCTTGAGGCTTTTT 60.440 41.667 0.00 0.00 34.44 1.94
1131 1171 2.160417 GCAACCTGAAATTGAGGAGTCG 59.840 50.000 5.28 0.00 34.37 4.18
1251 1292 3.499918 CGGCTTTGATCTTCTTCAGTGTT 59.500 43.478 0.00 0.00 0.00 3.32
1281 1322 6.765403 ACTTGACATAGTTGCTACCAGTTTA 58.235 36.000 0.00 0.00 0.00 2.01
1307 1354 1.863454 GATCGGTTCACTATGCTGCAG 59.137 52.381 10.11 10.11 0.00 4.41
1335 1382 7.484035 AATTAAGCAAGCACATAGTAGCTAC 57.516 36.000 16.43 16.43 40.90 3.58
1337 1384 7.716998 ACATAATTAAGCAAGCACATAGTAGCT 59.283 33.333 0.00 0.00 44.31 3.32
1338 1385 7.865707 ACATAATTAAGCAAGCACATAGTAGC 58.134 34.615 0.00 0.00 0.00 3.58
1341 1388 8.712363 CGATACATAATTAAGCAAGCACATAGT 58.288 33.333 0.00 0.00 0.00 2.12
1342 1389 8.712363 ACGATACATAATTAAGCAAGCACATAG 58.288 33.333 0.00 0.00 0.00 2.23
1343 1390 8.601845 ACGATACATAATTAAGCAAGCACATA 57.398 30.769 0.00 0.00 0.00 2.29
1344 1391 7.442364 AGACGATACATAATTAAGCAAGCACAT 59.558 33.333 0.00 0.00 0.00 3.21
1345 1392 6.761242 AGACGATACATAATTAAGCAAGCACA 59.239 34.615 0.00 0.00 0.00 4.57
1346 1393 7.178712 AGACGATACATAATTAAGCAAGCAC 57.821 36.000 0.00 0.00 0.00 4.40
1509 1585 4.066710 CGAAAGGGAACGAGAATGTTTC 57.933 45.455 0.00 0.00 30.75 2.78
1538 1615 4.743493 TCTTTGGTCTTGTTCAGTTTTGC 58.257 39.130 0.00 0.00 0.00 3.68
1574 1651 5.237236 ACAAACGGGAGGAAGAAGATTTA 57.763 39.130 0.00 0.00 0.00 1.40
1576 1653 3.790089 ACAAACGGGAGGAAGAAGATT 57.210 42.857 0.00 0.00 0.00 2.40
1650 1727 4.374843 CTCTCACACAGAGGAGAATCAG 57.625 50.000 0.00 0.00 44.75 2.90
1708 1785 5.679734 TGTTCAGATTTCAGAAAGTCTGC 57.320 39.130 20.05 13.00 44.59 4.26
1711 1788 6.146184 TCGTCATGTTCAGATTTCAGAAAGTC 59.854 38.462 1.28 0.35 0.00 3.01
1743 1820 2.777692 AGAAACAGAGACCCCTTGTTCA 59.222 45.455 0.00 0.00 0.00 3.18
1745 1822 3.244596 GCTAGAAACAGAGACCCCTTGTT 60.245 47.826 0.00 0.00 0.00 2.83
1752 1837 0.246635 TGCGGCTAGAAACAGAGACC 59.753 55.000 0.00 0.00 0.00 3.85
1753 1838 1.202582 TCTGCGGCTAGAAACAGAGAC 59.797 52.381 0.00 0.00 34.35 3.36
1820 1905 5.519722 CCCGGTAAACTGAATCAATATTGC 58.480 41.667 10.76 0.00 0.00 3.56
1824 1909 3.201266 AGGCCCGGTAAACTGAATCAATA 59.799 43.478 0.00 0.00 0.00 1.90
1842 1927 2.543777 TGCAAATATCTACGGAGGCC 57.456 50.000 0.00 0.00 0.00 5.19
1848 1933 6.117911 TGTTGAACCATGCAAATATCTACG 57.882 37.500 0.00 0.00 0.00 3.51
1905 1990 9.941325 ACTAATCTGGATTGATATCACTGAATC 57.059 33.333 4.48 5.77 32.09 2.52
1906 1991 9.722184 CACTAATCTGGATTGATATCACTGAAT 57.278 33.333 4.48 0.00 32.09 2.57
1907 1992 8.708378 ACACTAATCTGGATTGATATCACTGAA 58.292 33.333 4.48 0.00 32.09 3.02
1942 2027 6.367695 GCACACACACATGTATAAGTAGTTCA 59.632 38.462 0.00 0.00 36.72 3.18
2021 2106 1.067776 CGCCTTAAGACGTCTCCAAGT 60.068 52.381 26.04 13.39 0.00 3.16
2023 2108 1.068055 GTCGCCTTAAGACGTCTCCAA 60.068 52.381 20.33 14.68 0.00 3.53
2030 2115 2.295253 ATCCAAGTCGCCTTAAGACG 57.705 50.000 4.64 4.64 42.97 4.18
2035 2120 1.906574 ACTCCAATCCAAGTCGCCTTA 59.093 47.619 0.00 0.00 0.00 2.69
2049 2134 3.258372 CAGCAGGTTCAGTAGTACTCCAA 59.742 47.826 0.00 0.00 0.00 3.53
2051 2136 3.090037 TCAGCAGGTTCAGTAGTACTCC 58.910 50.000 0.00 0.00 0.00 3.85
2052 2137 4.158764 ACATCAGCAGGTTCAGTAGTACTC 59.841 45.833 0.00 0.00 0.00 2.59
2053 2138 4.081972 CACATCAGCAGGTTCAGTAGTACT 60.082 45.833 0.00 0.00 0.00 2.73
2068 2178 3.004106 GCCTAAACCATCATCACATCAGC 59.996 47.826 0.00 0.00 0.00 4.26
2114 2224 3.019003 ATGACTTCCACGGAGCGGG 62.019 63.158 0.00 0.00 0.00 6.13
2115 2225 1.811266 CATGACTTCCACGGAGCGG 60.811 63.158 0.00 0.00 0.00 5.52
2116 2226 1.811266 CCATGACTTCCACGGAGCG 60.811 63.158 0.00 0.00 27.01 5.03
2117 2227 1.450312 CCCATGACTTCCACGGAGC 60.450 63.158 0.00 0.00 27.01 4.70
2153 2263 0.462759 CAACCCTTCGATCTGCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
2154 2264 0.462759 CCAACCCTTCGATCTGCCTC 60.463 60.000 0.00 0.00 0.00 4.70
2155 2265 0.909610 TCCAACCCTTCGATCTGCCT 60.910 55.000 0.00 0.00 0.00 4.75
2156 2266 0.462759 CTCCAACCCTTCGATCTGCC 60.463 60.000 0.00 0.00 0.00 4.85
2157 2267 0.462759 CCTCCAACCCTTCGATCTGC 60.463 60.000 0.00 0.00 0.00 4.26
2158 2268 1.195115 TCCTCCAACCCTTCGATCTG 58.805 55.000 0.00 0.00 0.00 2.90
2159 2269 1.765314 CATCCTCCAACCCTTCGATCT 59.235 52.381 0.00 0.00 0.00 2.75
2160 2270 1.811941 GCATCCTCCAACCCTTCGATC 60.812 57.143 0.00 0.00 0.00 3.69
2161 2271 0.181350 GCATCCTCCAACCCTTCGAT 59.819 55.000 0.00 0.00 0.00 3.59
2162 2272 1.602237 GCATCCTCCAACCCTTCGA 59.398 57.895 0.00 0.00 0.00 3.71
2163 2273 1.815421 CGCATCCTCCAACCCTTCG 60.815 63.158 0.00 0.00 0.00 3.79
2164 2274 1.452108 CCGCATCCTCCAACCCTTC 60.452 63.158 0.00 0.00 0.00 3.46
2165 2275 1.281925 ATCCGCATCCTCCAACCCTT 61.282 55.000 0.00 0.00 0.00 3.95
2166 2276 1.694169 ATCCGCATCCTCCAACCCT 60.694 57.895 0.00 0.00 0.00 4.34
2167 2277 1.526917 CATCCGCATCCTCCAACCC 60.527 63.158 0.00 0.00 0.00 4.11
2168 2278 0.815615 GTCATCCGCATCCTCCAACC 60.816 60.000 0.00 0.00 0.00 3.77
2169 2279 0.107703 TGTCATCCGCATCCTCCAAC 60.108 55.000 0.00 0.00 0.00 3.77
2170 2280 0.839277 ATGTCATCCGCATCCTCCAA 59.161 50.000 0.00 0.00 0.00 3.53
2171 2281 0.394192 GATGTCATCCGCATCCTCCA 59.606 55.000 0.90 0.00 37.38 3.86
2172 2282 0.683973 AGATGTCATCCGCATCCTCC 59.316 55.000 9.29 0.00 42.58 4.30
2173 2283 2.224137 TGAAGATGTCATCCGCATCCTC 60.224 50.000 9.29 0.00 42.58 3.71
2174 2284 1.764723 TGAAGATGTCATCCGCATCCT 59.235 47.619 9.29 0.00 42.58 3.24
2175 2285 2.245159 TGAAGATGTCATCCGCATCC 57.755 50.000 9.29 0.00 42.58 3.51
2184 2294 4.245660 GGAACGAGTTGATGAAGATGTCA 58.754 43.478 0.00 0.00 41.67 3.58
2185 2295 4.245660 TGGAACGAGTTGATGAAGATGTC 58.754 43.478 0.00 0.00 0.00 3.06
2186 2296 4.271696 TGGAACGAGTTGATGAAGATGT 57.728 40.909 0.00 0.00 0.00 3.06
2187 2297 4.872124 TCATGGAACGAGTTGATGAAGATG 59.128 41.667 0.00 0.00 0.00 2.90
2188 2298 5.089970 TCATGGAACGAGTTGATGAAGAT 57.910 39.130 0.00 0.00 0.00 2.40
2189 2299 4.535526 TCATGGAACGAGTTGATGAAGA 57.464 40.909 0.00 0.00 0.00 2.87
2190 2300 4.692625 AGTTCATGGAACGAGTTGATGAAG 59.307 41.667 15.03 0.00 45.96 3.02
2191 2301 4.641396 AGTTCATGGAACGAGTTGATGAA 58.359 39.130 12.41 12.41 45.96 2.57
2192 2302 4.245660 GAGTTCATGGAACGAGTTGATGA 58.754 43.478 3.69 0.00 45.96 2.92
2193 2303 3.061295 CGAGTTCATGGAACGAGTTGATG 59.939 47.826 3.69 0.00 45.96 3.07
2194 2304 3.254060 CGAGTTCATGGAACGAGTTGAT 58.746 45.455 3.69 0.00 45.96 2.57
2195 2305 2.609491 CCGAGTTCATGGAACGAGTTGA 60.609 50.000 3.79 0.00 45.96 3.18
2196 2306 1.726791 CCGAGTTCATGGAACGAGTTG 59.273 52.381 3.79 0.00 45.96 3.16
2197 2307 1.337823 CCCGAGTTCATGGAACGAGTT 60.338 52.381 3.79 0.00 45.96 3.01
2198 2308 0.246635 CCCGAGTTCATGGAACGAGT 59.753 55.000 3.79 0.00 45.96 4.18
2199 2309 0.460284 CCCCGAGTTCATGGAACGAG 60.460 60.000 3.79 2.59 45.96 4.18
2200 2310 1.594833 CCCCGAGTTCATGGAACGA 59.405 57.895 3.79 0.00 45.96 3.85
2201 2311 2.106683 GCCCCGAGTTCATGGAACG 61.107 63.158 3.69 0.00 45.96 3.95
2202 2312 1.749258 GGCCCCGAGTTCATGGAAC 60.749 63.158 0.00 0.94 42.25 3.62
2203 2313 2.674754 GGCCCCGAGTTCATGGAA 59.325 61.111 0.00 0.00 0.00 3.53
2204 2314 3.407967 GGGCCCCGAGTTCATGGA 61.408 66.667 12.23 0.00 0.00 3.41
2205 2315 4.506255 GGGGCCCCGAGTTCATGG 62.506 72.222 29.50 0.00 0.00 3.66
2206 2316 2.983879 AAGGGGCCCCGAGTTCATG 61.984 63.158 35.78 0.00 41.95 3.07
2207 2317 2.614013 AAGGGGCCCCGAGTTCAT 60.614 61.111 35.78 13.71 41.95 2.57
2208 2318 3.646715 CAAGGGGCCCCGAGTTCA 61.647 66.667 35.78 0.00 41.95 3.18
2233 2343 1.269012 AATCAGCAAACATGTGGGGG 58.731 50.000 0.00 0.00 0.00 5.40
2234 2344 2.690786 CAAATCAGCAAACATGTGGGG 58.309 47.619 0.00 0.00 0.00 4.96
2235 2345 2.070783 GCAAATCAGCAAACATGTGGG 58.929 47.619 0.00 0.00 0.00 4.61
2236 2346 2.070783 GGCAAATCAGCAAACATGTGG 58.929 47.619 0.00 0.00 35.83 4.17
2237 2347 2.070783 GGGCAAATCAGCAAACATGTG 58.929 47.619 0.00 0.00 35.83 3.21
2238 2348 1.693062 TGGGCAAATCAGCAAACATGT 59.307 42.857 0.00 0.00 35.83 3.21
2239 2349 2.070783 GTGGGCAAATCAGCAAACATG 58.929 47.619 0.00 0.00 35.83 3.21
2240 2350 1.002315 GGTGGGCAAATCAGCAAACAT 59.998 47.619 0.00 0.00 35.83 2.71
2241 2351 0.392336 GGTGGGCAAATCAGCAAACA 59.608 50.000 0.00 0.00 35.83 2.83
2242 2352 0.681175 AGGTGGGCAAATCAGCAAAC 59.319 50.000 0.00 0.00 35.33 2.93
2243 2353 0.680618 CAGGTGGGCAAATCAGCAAA 59.319 50.000 0.00 0.00 35.33 3.68
2244 2354 0.178967 TCAGGTGGGCAAATCAGCAA 60.179 50.000 0.00 0.00 35.33 3.91
2245 2355 0.178967 TTCAGGTGGGCAAATCAGCA 60.179 50.000 0.00 0.00 35.33 4.41
2246 2356 0.968405 TTTCAGGTGGGCAAATCAGC 59.032 50.000 0.00 0.00 0.00 4.26
2247 2357 2.517959 TCTTTCAGGTGGGCAAATCAG 58.482 47.619 0.00 0.00 0.00 2.90
2248 2358 2.673775 TCTTTCAGGTGGGCAAATCA 57.326 45.000 0.00 0.00 0.00 2.57
2249 2359 2.167075 CCATCTTTCAGGTGGGCAAATC 59.833 50.000 0.00 0.00 0.00 2.17
2250 2360 2.181975 CCATCTTTCAGGTGGGCAAAT 58.818 47.619 0.00 0.00 0.00 2.32
2251 2361 1.146774 TCCATCTTTCAGGTGGGCAAA 59.853 47.619 3.15 0.00 33.78 3.68
2252 2362 0.776810 TCCATCTTTCAGGTGGGCAA 59.223 50.000 3.15 0.00 33.78 4.52
2253 2363 1.002069 ATCCATCTTTCAGGTGGGCA 58.998 50.000 3.15 0.00 33.78 5.36
2254 2364 1.064463 TGATCCATCTTTCAGGTGGGC 60.064 52.381 3.15 0.00 33.78 5.36
2255 2365 3.370840 TTGATCCATCTTTCAGGTGGG 57.629 47.619 3.15 0.00 33.78 4.61
2256 2366 4.592942 TCTTTGATCCATCTTTCAGGTGG 58.407 43.478 0.00 0.00 0.00 4.61
2257 2367 5.884232 TCATCTTTGATCCATCTTTCAGGTG 59.116 40.000 0.00 0.00 0.00 4.00
2258 2368 6.070951 TCATCTTTGATCCATCTTTCAGGT 57.929 37.500 0.00 0.00 0.00 4.00
2259 2369 7.400599 TTTCATCTTTGATCCATCTTTCAGG 57.599 36.000 0.00 0.00 0.00 3.86
2260 2370 9.947669 GTATTTCATCTTTGATCCATCTTTCAG 57.052 33.333 0.00 0.00 0.00 3.02
2261 2371 8.615211 CGTATTTCATCTTTGATCCATCTTTCA 58.385 33.333 0.00 0.00 0.00 2.69
2262 2372 8.616076 ACGTATTTCATCTTTGATCCATCTTTC 58.384 33.333 0.00 0.00 0.00 2.62
2263 2373 8.400947 CACGTATTTCATCTTTGATCCATCTTT 58.599 33.333 0.00 0.00 0.00 2.52
2264 2374 7.770433 TCACGTATTTCATCTTTGATCCATCTT 59.230 33.333 0.00 0.00 0.00 2.40
2265 2375 7.275183 TCACGTATTTCATCTTTGATCCATCT 58.725 34.615 0.00 0.00 0.00 2.90
2266 2376 7.482654 TCACGTATTTCATCTTTGATCCATC 57.517 36.000 0.00 0.00 0.00 3.51
2267 2377 7.864108 TTCACGTATTTCATCTTTGATCCAT 57.136 32.000 0.00 0.00 0.00 3.41
2268 2378 7.864108 ATTCACGTATTTCATCTTTGATCCA 57.136 32.000 0.00 0.00 0.00 3.41
2269 2379 9.573133 AAAATTCACGTATTTCATCTTTGATCC 57.427 29.630 0.00 0.00 0.00 3.36
2272 2382 9.958234 TTGAAAATTCACGTATTTCATCTTTGA 57.042 25.926 14.63 2.11 41.26 2.69
2274 2384 9.965824 ACTTGAAAATTCACGTATTTCATCTTT 57.034 25.926 14.63 0.00 41.26 2.52
2275 2385 9.398170 CACTTGAAAATTCACGTATTTCATCTT 57.602 29.630 14.63 4.60 41.26 2.40
2276 2386 8.567948 ACACTTGAAAATTCACGTATTTCATCT 58.432 29.630 14.63 5.03 41.26 2.90
2277 2387 8.629986 CACACTTGAAAATTCACGTATTTCATC 58.370 33.333 14.63 4.53 41.26 2.92
2278 2388 7.594758 CCACACTTGAAAATTCACGTATTTCAT 59.405 33.333 14.63 3.63 41.26 2.57
2279 2389 6.915300 CCACACTTGAAAATTCACGTATTTCA 59.085 34.615 11.57 11.57 37.54 2.69
2280 2390 7.136119 TCCACACTTGAAAATTCACGTATTTC 58.864 34.615 5.15 0.00 37.54 2.17
2281 2391 7.033530 TCCACACTTGAAAATTCACGTATTT 57.966 32.000 5.15 0.00 37.54 1.40
2282 2392 6.627395 TCCACACTTGAAAATTCACGTATT 57.373 33.333 5.15 0.00 37.54 1.89
2283 2393 6.627395 TTCCACACTTGAAAATTCACGTAT 57.373 33.333 5.15 0.00 37.54 3.06
2284 2394 6.438259 TTTCCACACTTGAAAATTCACGTA 57.562 33.333 5.15 0.00 37.54 3.57
2285 2395 4.974368 TTCCACACTTGAAAATTCACGT 57.026 36.364 0.00 0.00 39.85 4.49
2286 2396 4.207019 GCTTTCCACACTTGAAAATTCACG 59.793 41.667 0.00 0.00 36.83 4.35
2287 2397 5.108517 TGCTTTCCACACTTGAAAATTCAC 58.891 37.500 0.00 0.00 36.83 3.18
2288 2398 5.336150 TGCTTTCCACACTTGAAAATTCA 57.664 34.783 0.00 0.00 31.77 2.57
2289 2399 5.277011 GCTTGCTTTCCACACTTGAAAATTC 60.277 40.000 0.00 0.00 31.77 2.17
2290 2400 4.571984 GCTTGCTTTCCACACTTGAAAATT 59.428 37.500 0.00 0.00 31.77 1.82
2291 2401 4.122046 GCTTGCTTTCCACACTTGAAAAT 58.878 39.130 0.00 0.00 31.77 1.82
2292 2402 3.520569 GCTTGCTTTCCACACTTGAAAA 58.479 40.909 0.00 0.00 31.77 2.29
2293 2403 2.159114 GGCTTGCTTTCCACACTTGAAA 60.159 45.455 0.00 0.00 0.00 2.69
2294 2404 1.408702 GGCTTGCTTTCCACACTTGAA 59.591 47.619 0.00 0.00 0.00 2.69
2295 2405 1.032014 GGCTTGCTTTCCACACTTGA 58.968 50.000 0.00 0.00 0.00 3.02
2296 2406 0.032540 GGGCTTGCTTTCCACACTTG 59.967 55.000 0.00 0.00 0.00 3.16
2297 2407 0.106015 AGGGCTTGCTTTCCACACTT 60.106 50.000 0.00 0.00 0.00 3.16
2298 2408 0.825010 CAGGGCTTGCTTTCCACACT 60.825 55.000 0.00 0.00 0.00 3.55
2299 2409 1.662044 CAGGGCTTGCTTTCCACAC 59.338 57.895 0.00 0.00 0.00 3.82
2300 2410 4.179361 CAGGGCTTGCTTTCCACA 57.821 55.556 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.