Multiple sequence alignment - TraesCS5D01G544600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G544600 chr5D 100.000 2114 0 0 1 2114 554200049 554202162 0.000000e+00 3868.0
1 TraesCS5D01G544600 chr5D 98.048 1332 16 3 467 1798 6207644 6206323 0.000000e+00 2307.0
2 TraesCS5D01G544600 chr5D 99.579 475 1 1 1 474 554201297 554200823 0.000000e+00 865.0
3 TraesCS5D01G544600 chr5D 98.316 475 5 2 1 474 6206872 6207344 0.000000e+00 830.0
4 TraesCS5D01G544600 chr5D 100.000 56 0 0 1809 1864 554201331 554201386 1.030000e-18 104.0
5 TraesCS5D01G544600 chr1D 99.250 1333 5 2 467 1798 394179089 394180417 0.000000e+00 2401.0
6 TraesCS5D01G544600 chr1D 95.049 1333 52 8 467 1798 244444230 244445549 0.000000e+00 2084.0
7 TraesCS5D01G544600 chr1D 98.775 1143 6 3 656 1798 483922592 483921458 0.000000e+00 2026.0
8 TraesCS5D01G544600 chr1D 99.370 476 1 2 1 474 394179868 394179393 0.000000e+00 861.0
9 TraesCS5D01G544600 chr1D 98.947 475 2 3 1 474 483922007 483922479 0.000000e+00 846.0
10 TraesCS5D01G544600 chr1D 98.316 475 4 3 1 474 254490649 254490178 0.000000e+00 830.0
11 TraesCS5D01G544600 chr1D 99.087 219 2 0 1896 2114 258740029 258739811 5.470000e-106 394.0
12 TraesCS5D01G544600 chr1D 100.000 55 0 0 1809 1863 254490683 254490737 3.710000e-18 102.0
13 TraesCS5D01G544600 chr1D 100.000 55 0 0 1809 1863 394179902 394179956 3.710000e-18 102.0
14 TraesCS5D01G544600 chr1D 100.000 55 0 0 1809 1863 456070999 456070945 3.710000e-18 102.0
15 TraesCS5D01G544600 chr1D 100.000 55 0 0 1809 1863 483921973 483921919 3.710000e-18 102.0
16 TraesCS5D01G544600 chr6D 98.724 1332 9 2 467 1798 431400203 431401526 0.000000e+00 2359.0
17 TraesCS5D01G544600 chr6D 99.158 475 2 2 1 474 431400977 431400504 0.000000e+00 854.0
18 TraesCS5D01G544600 chr6D 98.174 219 4 0 1896 2114 259802638 259802420 1.180000e-102 383.0
19 TraesCS5D01G544600 chr6D 100.000 55 0 0 1809 1863 431403228 431403174 3.710000e-18 102.0
20 TraesCS5D01G544600 chr6D 100.000 55 0 0 1809 1863 431403892 431403946 3.710000e-18 102.0
21 TraesCS5D01G544600 chr6D 94.231 52 1 1 1864 1915 189053423 189053472 6.250000e-11 78.7
22 TraesCS5D01G544600 chr6D 92.727 55 2 1 1864 1918 423250917 423250865 6.250000e-11 78.7
23 TraesCS5D01G544600 chrUn 98.575 1333 11 2 467 1798 317473011 317471686 0.000000e+00 2350.0
24 TraesCS5D01G544600 chrUn 98.950 476 3 2 1 474 317472235 317472710 0.000000e+00 850.0
25 TraesCS5D01G544600 chrUn 100.000 55 0 0 1809 1863 317472201 317472147 3.710000e-18 102.0
26 TraesCS5D01G544600 chr3B 98.498 1332 13 2 467 1798 201506754 201508078 0.000000e+00 2342.0
27 TraesCS5D01G544600 chr3B 98.737 475 4 2 1 474 201507529 201507056 0.000000e+00 843.0
28 TraesCS5D01G544600 chr2D 97.297 1332 23 4 467 1798 334226098 334227416 0.000000e+00 2248.0
29 TraesCS5D01G544600 chr2D 99.087 219 2 0 1896 2114 541775381 541775163 5.470000e-106 394.0
30 TraesCS5D01G544600 chr2D 98.630 219 3 0 1896 2114 209390099 209389881 2.540000e-104 388.0
31 TraesCS5D01G544600 chr2D 94.545 55 1 1 1864 1918 84659985 84659933 1.340000e-12 84.2
32 TraesCS5D01G544600 chr2A 97.372 1332 12 5 467 1798 335826456 335827764 0.000000e+00 2244.0
33 TraesCS5D01G544600 chr2A 98.316 475 5 3 1 474 335827232 335826760 0.000000e+00 830.0
34 TraesCS5D01G544600 chr7D 98.630 219 3 0 1896 2114 353722138 353721920 2.540000e-104 388.0
35 TraesCS5D01G544600 chr7D 94.340 53 1 1 1864 1916 201633672 201633622 1.740000e-11 80.5
36 TraesCS5D01G544600 chr4D 98.630 219 3 0 1896 2114 84562329 84562547 2.540000e-104 388.0
37 TraesCS5D01G544600 chr4D 98.618 217 3 0 1898 2114 129026965 129027181 3.290000e-103 385.0
38 TraesCS5D01G544600 chr4D 98.174 219 4 0 1896 2114 354198998 354198780 1.180000e-102 383.0
39 TraesCS5D01G544600 chr4D 98.174 219 4 0 1896 2114 373964729 373964511 1.180000e-102 383.0
40 TraesCS5D01G544600 chr4D 100.000 55 0 0 1809 1863 304096995 304096941 3.710000e-18 102.0
41 TraesCS5D01G544600 chr4D 92.727 55 2 1 1864 1918 35323658 35323606 6.250000e-11 78.7
42 TraesCS5D01G544600 chr4D 94.231 52 1 1 1864 1915 255834970 255835019 6.250000e-11 78.7
43 TraesCS5D01G544600 chr4D 92.727 55 2 1 1864 1918 271017730 271017678 6.250000e-11 78.7
44 TraesCS5D01G544600 chr4D 94.231 52 1 1 1864 1915 295780813 295780862 6.250000e-11 78.7
45 TraesCS5D01G544600 chr3D 98.630 219 3 0 1896 2114 90503411 90503193 2.540000e-104 388.0
46 TraesCS5D01G544600 chr3D 94.340 53 1 1 1863 1915 83418991 83419041 1.740000e-11 80.5
47 TraesCS5D01G544600 chr3D 94.340 53 1 1 1863 1915 300312913 300312963 1.740000e-11 80.5
48 TraesCS5D01G544600 chr6A 100.000 55 0 0 1809 1863 613410624 613410678 3.710000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G544600 chr5D 554200049 554202162 2113 False 1986.0 3868 100.0000 1 2114 2 chr5D.!!$F2 2113
1 TraesCS5D01G544600 chr5D 6206323 6207644 1321 True 2307.0 2307 98.0480 467 1798 1 chr5D.!!$R1 1331
2 TraesCS5D01G544600 chr1D 244444230 244445549 1319 False 2084.0 2084 95.0490 467 1798 1 chr1D.!!$F1 1331
3 TraesCS5D01G544600 chr1D 394179089 394180417 1328 False 1251.5 2401 99.6250 467 1863 2 chr1D.!!$F4 1396
4 TraesCS5D01G544600 chr1D 483921458 483922592 1134 True 1064.0 2026 99.3875 656 1863 2 chr1D.!!$R5 1207
5 TraesCS5D01G544600 chr6D 431400203 431403946 3743 False 1230.5 2359 99.3620 467 1863 2 chr6D.!!$F2 1396
6 TraesCS5D01G544600 chr6D 431400504 431403228 2724 True 478.0 854 99.5790 1 1863 2 chr6D.!!$R3 1862
7 TraesCS5D01G544600 chrUn 317471686 317473011 1325 True 1226.0 2350 99.2875 467 1863 2 chrUn.!!$R1 1396
8 TraesCS5D01G544600 chr3B 201506754 201508078 1324 False 2342.0 2342 98.4980 467 1798 1 chr3B.!!$F1 1331
9 TraesCS5D01G544600 chr2D 334226098 334227416 1318 False 2248.0 2248 97.2970 467 1798 1 chr2D.!!$F1 1331
10 TraesCS5D01G544600 chr2A 335826456 335827764 1308 False 2244.0 2244 97.3720 467 1798 1 chr2A.!!$F1 1331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.040351 CTCTGGTCTGGAGGAGGTCA 59.96 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 4471 0.038159 AAGGAAGCGTGAGAAGACGG 60.038 55.0 0.0 0.0 39.81 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.847328 TCCTACAGAGCGTGATTCCA 58.153 50.000 0.00 0.00 0.00 3.53
21 22 2.388735 TCCTACAGAGCGTGATTCCAT 58.611 47.619 0.00 0.00 0.00 3.41
22 23 2.362397 TCCTACAGAGCGTGATTCCATC 59.638 50.000 0.00 0.00 0.00 3.51
23 24 2.363680 CCTACAGAGCGTGATTCCATCT 59.636 50.000 0.00 0.00 0.00 2.90
24 25 3.570125 CCTACAGAGCGTGATTCCATCTA 59.430 47.826 0.00 0.00 0.00 1.98
25 26 4.219507 CCTACAGAGCGTGATTCCATCTAT 59.780 45.833 0.00 0.00 0.00 1.98
26 27 4.250116 ACAGAGCGTGATTCCATCTATC 57.750 45.455 0.00 0.00 0.00 2.08
27 28 3.894427 ACAGAGCGTGATTCCATCTATCT 59.106 43.478 0.00 0.00 0.00 1.98
28 29 4.343526 ACAGAGCGTGATTCCATCTATCTT 59.656 41.667 0.00 0.00 0.00 2.40
29 30 5.536538 ACAGAGCGTGATTCCATCTATCTTA 59.463 40.000 0.00 0.00 0.00 2.10
30 31 6.210385 ACAGAGCGTGATTCCATCTATCTTAT 59.790 38.462 0.00 0.00 0.00 1.73
31 32 6.530887 CAGAGCGTGATTCCATCTATCTTATG 59.469 42.308 0.00 0.00 0.00 1.90
32 33 6.210385 AGAGCGTGATTCCATCTATCTTATGT 59.790 38.462 0.00 0.00 0.00 2.29
33 34 6.393990 AGCGTGATTCCATCTATCTTATGTC 58.606 40.000 0.00 0.00 0.00 3.06
34 35 5.287274 GCGTGATTCCATCTATCTTATGTCG 59.713 44.000 0.00 0.00 0.00 4.35
35 36 6.612306 CGTGATTCCATCTATCTTATGTCGA 58.388 40.000 0.00 0.00 0.00 4.20
36 37 7.084486 CGTGATTCCATCTATCTTATGTCGAA 58.916 38.462 0.00 0.00 0.00 3.71
37 38 7.272299 CGTGATTCCATCTATCTTATGTCGAAG 59.728 40.741 0.00 0.00 0.00 3.79
38 39 7.062839 GTGATTCCATCTATCTTATGTCGAAGC 59.937 40.741 0.00 0.00 0.00 3.86
39 40 6.405278 TTCCATCTATCTTATGTCGAAGCA 57.595 37.500 0.00 0.00 0.00 3.91
40 41 6.018589 TCCATCTATCTTATGTCGAAGCAG 57.981 41.667 0.00 0.00 0.00 4.24
41 42 5.770162 TCCATCTATCTTATGTCGAAGCAGA 59.230 40.000 0.00 0.00 0.00 4.26
42 43 6.072230 TCCATCTATCTTATGTCGAAGCAGAG 60.072 42.308 0.00 0.00 0.00 3.35
43 44 6.294453 CCATCTATCTTATGTCGAAGCAGAGT 60.294 42.308 0.00 0.00 0.00 3.24
44 45 7.094592 CCATCTATCTTATGTCGAAGCAGAGTA 60.095 40.741 0.00 0.00 0.00 2.59
45 46 7.803279 TCTATCTTATGTCGAAGCAGAGTAA 57.197 36.000 0.00 0.00 0.00 2.24
46 47 8.221965 TCTATCTTATGTCGAAGCAGAGTAAA 57.778 34.615 0.00 0.00 0.00 2.01
47 48 8.851145 TCTATCTTATGTCGAAGCAGAGTAAAT 58.149 33.333 0.00 0.00 0.00 1.40
50 51 8.630278 TCTTATGTCGAAGCAGAGTAAATAAC 57.370 34.615 0.00 0.00 0.00 1.89
51 52 8.467598 TCTTATGTCGAAGCAGAGTAAATAACT 58.532 33.333 0.00 0.00 42.80 2.24
52 53 8.997621 TTATGTCGAAGCAGAGTAAATAACTT 57.002 30.769 0.00 0.00 39.07 2.66
54 55 8.997621 ATGTCGAAGCAGAGTAAATAACTTAA 57.002 30.769 0.00 0.00 39.07 1.85
55 56 8.236084 TGTCGAAGCAGAGTAAATAACTTAAC 57.764 34.615 0.00 0.00 39.07 2.01
56 57 7.868922 TGTCGAAGCAGAGTAAATAACTTAACA 59.131 33.333 0.00 0.00 39.07 2.41
57 58 8.706035 GTCGAAGCAGAGTAAATAACTTAACAA 58.294 33.333 0.00 0.00 39.07 2.83
58 59 9.263538 TCGAAGCAGAGTAAATAACTTAACAAA 57.736 29.630 0.00 0.00 39.07 2.83
59 60 9.872757 CGAAGCAGAGTAAATAACTTAACAAAA 57.127 29.630 0.00 0.00 39.07 2.44
89 90 8.831715 ATTGTAACTCCAATTTCAATTTGACC 57.168 30.769 0.00 0.00 31.01 4.02
90 91 7.595819 TGTAACTCCAATTTCAATTTGACCT 57.404 32.000 0.00 0.00 0.00 3.85
91 92 7.657336 TGTAACTCCAATTTCAATTTGACCTC 58.343 34.615 0.00 0.00 0.00 3.85
92 93 5.728637 ACTCCAATTTCAATTTGACCTCC 57.271 39.130 0.00 0.00 0.00 4.30
93 94 5.397360 ACTCCAATTTCAATTTGACCTCCT 58.603 37.500 0.00 0.00 0.00 3.69
94 95 5.478332 ACTCCAATTTCAATTTGACCTCCTC 59.522 40.000 0.00 0.00 0.00 3.71
95 96 5.644188 TCCAATTTCAATTTGACCTCCTCT 58.356 37.500 0.00 0.00 0.00 3.69
96 97 5.711976 TCCAATTTCAATTTGACCTCCTCTC 59.288 40.000 0.00 0.00 0.00 3.20
97 98 5.713861 CCAATTTCAATTTGACCTCCTCTCT 59.286 40.000 0.00 0.00 0.00 3.10
98 99 6.349944 CCAATTTCAATTTGACCTCCTCTCTG 60.350 42.308 0.00 0.00 0.00 3.35
99 100 3.988976 TCAATTTGACCTCCTCTCTGG 57.011 47.619 0.00 0.00 37.10 3.86
100 101 3.251484 TCAATTTGACCTCCTCTCTGGT 58.749 45.455 0.00 0.00 39.60 4.00
104 105 2.894858 GACCTCCTCTCTGGTCTGG 58.105 63.158 5.05 0.00 46.65 3.86
105 106 0.333312 GACCTCCTCTCTGGTCTGGA 59.667 60.000 5.05 0.00 46.65 3.86
106 107 0.334676 ACCTCCTCTCTGGTCTGGAG 59.665 60.000 0.00 0.00 44.06 3.86
107 108 3.205815 CTCCTCTCTGGTCTGGAGG 57.794 63.158 0.00 0.00 45.65 4.30
109 110 3.205815 CCTCTCTGGTCTGGAGGAG 57.794 63.158 2.40 0.00 46.82 3.69
110 111 0.396974 CCTCTCTGGTCTGGAGGAGG 60.397 65.000 2.40 0.00 46.82 4.30
111 112 0.334676 CTCTCTGGTCTGGAGGAGGT 59.665 60.000 0.00 0.00 0.00 3.85
112 113 0.333312 TCTCTGGTCTGGAGGAGGTC 59.667 60.000 0.00 0.00 0.00 3.85
113 114 0.040351 CTCTGGTCTGGAGGAGGTCA 59.960 60.000 0.00 0.00 0.00 4.02
114 115 0.487325 TCTGGTCTGGAGGAGGTCAA 59.513 55.000 0.00 0.00 0.00 3.18
115 116 1.079490 TCTGGTCTGGAGGAGGTCAAT 59.921 52.381 0.00 0.00 0.00 2.57
116 117 1.484240 CTGGTCTGGAGGAGGTCAATC 59.516 57.143 0.00 0.00 0.00 2.67
117 118 1.203300 TGGTCTGGAGGAGGTCAATCA 60.203 52.381 0.00 0.00 0.00 2.57
118 119 1.909302 GGTCTGGAGGAGGTCAATCAA 59.091 52.381 0.00 0.00 0.00 2.57
119 120 2.305927 GGTCTGGAGGAGGTCAATCAAA 59.694 50.000 0.00 0.00 0.00 2.69
120 121 3.244911 GGTCTGGAGGAGGTCAATCAAAA 60.245 47.826 0.00 0.00 0.00 2.44
121 122 4.398319 GTCTGGAGGAGGTCAATCAAAAA 58.602 43.478 0.00 0.00 0.00 1.94
146 147 8.822652 AAAAATGACTCAATCAAAGATCCAAC 57.177 30.769 0.00 0.00 41.93 3.77
147 148 7.771927 AAATGACTCAATCAAAGATCCAACT 57.228 32.000 0.00 0.00 41.93 3.16
148 149 6.754702 ATGACTCAATCAAAGATCCAACTG 57.245 37.500 0.00 0.00 41.93 3.16
149 150 5.868454 TGACTCAATCAAAGATCCAACTGA 58.132 37.500 0.00 0.00 33.02 3.41
150 151 6.479006 TGACTCAATCAAAGATCCAACTGAT 58.521 36.000 0.00 0.00 33.02 2.90
151 152 6.596888 TGACTCAATCAAAGATCCAACTGATC 59.403 38.462 0.00 0.00 41.54 2.92
152 153 8.279451 TGACTCAATCAAAGATCCAACTGATCC 61.279 40.741 0.00 0.00 41.87 3.36
157 158 3.386543 GATCCAACTGATCCCCACG 57.613 57.895 0.00 0.00 43.53 4.94
158 159 0.815615 GATCCAACTGATCCCCACGC 60.816 60.000 0.00 0.00 43.53 5.34
159 160 2.270874 ATCCAACTGATCCCCACGCC 62.271 60.000 0.00 0.00 0.00 5.68
160 161 2.671070 CAACTGATCCCCACGCCT 59.329 61.111 0.00 0.00 0.00 5.52
161 162 1.746615 CAACTGATCCCCACGCCTG 60.747 63.158 0.00 0.00 0.00 4.85
162 163 2.224159 AACTGATCCCCACGCCTGT 61.224 57.895 0.00 0.00 0.00 4.00
163 164 0.907704 AACTGATCCCCACGCCTGTA 60.908 55.000 0.00 0.00 0.00 2.74
164 165 0.691078 ACTGATCCCCACGCCTGTAT 60.691 55.000 0.00 0.00 0.00 2.29
165 166 0.469917 CTGATCCCCACGCCTGTATT 59.530 55.000 0.00 0.00 0.00 1.89
166 167 0.180171 TGATCCCCACGCCTGTATTG 59.820 55.000 0.00 0.00 0.00 1.90
167 168 1.152963 ATCCCCACGCCTGTATTGC 60.153 57.895 0.00 0.00 0.00 3.56
168 169 1.920734 ATCCCCACGCCTGTATTGCA 61.921 55.000 0.00 0.00 0.00 4.08
169 170 1.677300 CCCCACGCCTGTATTGCAA 60.677 57.895 0.00 0.00 0.00 4.08
170 171 1.247419 CCCCACGCCTGTATTGCAAA 61.247 55.000 1.71 0.00 0.00 3.68
171 172 0.817013 CCCACGCCTGTATTGCAAAT 59.183 50.000 1.71 0.00 0.00 2.32
172 173 2.020720 CCCACGCCTGTATTGCAAATA 58.979 47.619 1.71 0.00 0.00 1.40
173 174 2.223479 CCCACGCCTGTATTGCAAATAC 60.223 50.000 1.71 7.58 0.00 1.89
174 175 2.538737 CCACGCCTGTATTGCAAATACG 60.539 50.000 1.71 4.70 0.00 3.06
175 176 1.063469 ACGCCTGTATTGCAAATACGC 59.937 47.619 1.71 6.14 0.00 4.42
176 177 1.063321 CGCCTGTATTGCAAATACGCA 59.937 47.619 1.71 0.00 41.03 5.24
177 178 2.719798 GCCTGTATTGCAAATACGCAG 58.280 47.619 1.71 7.56 44.14 5.18
178 179 2.097466 GCCTGTATTGCAAATACGCAGT 59.903 45.455 1.71 0.00 44.14 4.40
179 180 3.788797 GCCTGTATTGCAAATACGCAGTC 60.789 47.826 1.71 0.00 44.14 3.51
180 181 3.373748 CCTGTATTGCAAATACGCAGTCA 59.626 43.478 1.71 0.00 44.14 3.41
181 182 4.334443 CTGTATTGCAAATACGCAGTCAC 58.666 43.478 1.71 0.00 44.14 3.67
182 183 2.525750 ATTGCAAATACGCAGTCACG 57.474 45.000 1.71 0.00 44.14 4.35
183 184 1.503294 TTGCAAATACGCAGTCACGA 58.497 45.000 0.00 0.00 44.14 4.35
184 185 1.503294 TGCAAATACGCAGTCACGAA 58.497 45.000 0.00 0.00 43.93 3.85
185 186 2.073056 TGCAAATACGCAGTCACGAAT 58.927 42.857 0.00 0.00 43.93 3.34
186 187 3.254892 TGCAAATACGCAGTCACGAATA 58.745 40.909 0.00 0.00 43.93 1.75
187 188 3.680458 TGCAAATACGCAGTCACGAATAA 59.320 39.130 0.00 0.00 43.93 1.40
188 189 4.331443 TGCAAATACGCAGTCACGAATAAT 59.669 37.500 0.00 0.00 43.93 1.28
189 190 4.898488 GCAAATACGCAGTCACGAATAATC 59.102 41.667 0.00 0.00 43.93 1.75
190 191 5.432157 CAAATACGCAGTCACGAATAATCC 58.568 41.667 0.00 0.00 43.93 3.01
191 192 1.935933 ACGCAGTCACGAATAATCCC 58.064 50.000 0.00 0.00 29.74 3.85
192 193 0.852777 CGCAGTCACGAATAATCCCG 59.147 55.000 0.00 0.00 34.06 5.14
193 194 0.582005 GCAGTCACGAATAATCCCGC 59.418 55.000 0.00 0.00 0.00 6.13
194 195 1.806623 GCAGTCACGAATAATCCCGCT 60.807 52.381 0.00 0.00 0.00 5.52
195 196 2.545113 GCAGTCACGAATAATCCCGCTA 60.545 50.000 0.00 0.00 0.00 4.26
196 197 3.713288 CAGTCACGAATAATCCCGCTAA 58.287 45.455 0.00 0.00 0.00 3.09
197 198 4.116961 CAGTCACGAATAATCCCGCTAAA 58.883 43.478 0.00 0.00 0.00 1.85
198 199 4.209288 CAGTCACGAATAATCCCGCTAAAG 59.791 45.833 0.00 0.00 0.00 1.85
199 200 4.117685 GTCACGAATAATCCCGCTAAAGT 58.882 43.478 0.00 0.00 0.00 2.66
200 201 5.068198 AGTCACGAATAATCCCGCTAAAGTA 59.932 40.000 0.00 0.00 0.00 2.24
201 202 5.750067 GTCACGAATAATCCCGCTAAAGTAA 59.250 40.000 0.00 0.00 0.00 2.24
202 203 6.423001 GTCACGAATAATCCCGCTAAAGTAAT 59.577 38.462 0.00 0.00 0.00 1.89
203 204 7.596248 GTCACGAATAATCCCGCTAAAGTAATA 59.404 37.037 0.00 0.00 0.00 0.98
204 205 7.811236 TCACGAATAATCCCGCTAAAGTAATAG 59.189 37.037 0.00 0.00 0.00 1.73
205 206 7.063074 CACGAATAATCCCGCTAAAGTAATAGG 59.937 40.741 0.00 0.00 0.00 2.57
206 207 7.039504 ACGAATAATCCCGCTAAAGTAATAGGA 60.040 37.037 0.00 0.00 0.00 2.94
207 208 7.816031 CGAATAATCCCGCTAAAGTAATAGGAA 59.184 37.037 0.00 0.00 0.00 3.36
208 209 9.668497 GAATAATCCCGCTAAAGTAATAGGAAT 57.332 33.333 0.00 0.00 0.00 3.01
212 213 7.001099 TCCCGCTAAAGTAATAGGAATTAGG 57.999 40.000 0.00 0.00 0.00 2.69
213 214 5.642491 CCCGCTAAAGTAATAGGAATTAGGC 59.358 44.000 0.00 0.00 0.00 3.93
214 215 5.642491 CCGCTAAAGTAATAGGAATTAGGCC 59.358 44.000 0.00 0.00 0.00 5.19
215 216 6.465084 CGCTAAAGTAATAGGAATTAGGCCT 58.535 40.000 11.78 11.78 39.56 5.19
216 217 7.310237 CCGCTAAAGTAATAGGAATTAGGCCTA 60.310 40.741 8.91 8.91 41.91 3.93
217 218 8.092687 CGCTAAAGTAATAGGAATTAGGCCTAA 58.907 37.037 27.11 27.11 41.10 2.69
218 219 9.438228 GCTAAAGTAATAGGAATTAGGCCTAAG 57.562 37.037 28.35 11.31 41.10 2.18
221 222 7.229581 AGTAATAGGAATTAGGCCTAAGACG 57.770 40.000 28.35 0.00 41.10 4.18
222 223 7.008941 AGTAATAGGAATTAGGCCTAAGACGA 58.991 38.462 28.35 17.33 41.10 4.20
223 224 6.936968 AATAGGAATTAGGCCTAAGACGAT 57.063 37.500 28.35 18.56 41.10 3.73
224 225 6.936968 ATAGGAATTAGGCCTAAGACGATT 57.063 37.500 28.35 18.04 41.10 3.34
225 226 5.216614 AGGAATTAGGCCTAAGACGATTC 57.783 43.478 28.35 23.95 32.92 2.52
226 227 4.040584 AGGAATTAGGCCTAAGACGATTCC 59.959 45.833 30.97 30.97 33.01 3.01
227 228 4.202326 GGAATTAGGCCTAAGACGATTCCA 60.202 45.833 32.08 11.60 33.05 3.53
228 229 5.365619 GAATTAGGCCTAAGACGATTCCAA 58.634 41.667 28.35 4.99 0.00 3.53
229 230 4.829872 TTAGGCCTAAGACGATTCCAAA 57.170 40.909 21.68 0.00 0.00 3.28
230 231 3.933861 AGGCCTAAGACGATTCCAAAT 57.066 42.857 1.29 0.00 0.00 2.32
231 232 6.488769 TTAGGCCTAAGACGATTCCAAATA 57.511 37.500 21.68 0.00 0.00 1.40
232 233 4.962155 AGGCCTAAGACGATTCCAAATAG 58.038 43.478 1.29 0.00 0.00 1.73
233 234 4.654262 AGGCCTAAGACGATTCCAAATAGA 59.346 41.667 1.29 0.00 0.00 1.98
234 235 5.130477 AGGCCTAAGACGATTCCAAATAGAA 59.870 40.000 1.29 0.00 0.00 2.10
235 236 5.820947 GGCCTAAGACGATTCCAAATAGAAA 59.179 40.000 0.00 0.00 0.00 2.52
236 237 6.317893 GGCCTAAGACGATTCCAAATAGAAAA 59.682 38.462 0.00 0.00 0.00 2.29
237 238 7.148137 GGCCTAAGACGATTCCAAATAGAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
238 239 7.696872 GCCTAAGACGATTCCAAATAGAAAAAC 59.303 37.037 0.00 0.00 0.00 2.43
239 240 8.947115 CCTAAGACGATTCCAAATAGAAAAACT 58.053 33.333 0.00 0.00 0.00 2.66
242 243 8.391075 AGACGATTCCAAATAGAAAAACTTCA 57.609 30.769 0.00 0.00 0.00 3.02
243 244 8.846211 AGACGATTCCAAATAGAAAAACTTCAA 58.154 29.630 0.00 0.00 0.00 2.69
244 245 9.626045 GACGATTCCAAATAGAAAAACTTCAAT 57.374 29.630 0.00 0.00 0.00 2.57
245 246 9.626045 ACGATTCCAAATAGAAAAACTTCAATC 57.374 29.630 0.00 0.00 0.00 2.67
246 247 9.624697 CGATTCCAAATAGAAAAACTTCAATCA 57.375 29.630 0.00 0.00 0.00 2.57
257 258 9.533253 AGAAAAACTTCAATCATTTCGATTTGT 57.467 25.926 0.00 0.00 41.83 2.83
294 295 7.909485 AAAAAGAGGTACGATCTATCCCTAA 57.091 36.000 0.00 0.00 0.00 2.69
295 296 7.909485 AAAAGAGGTACGATCTATCCCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
296 297 8.493787 AAAAGAGGTACGATCTATCCCTAAAT 57.506 34.615 0.00 0.00 0.00 1.40
297 298 9.597681 AAAAGAGGTACGATCTATCCCTAAATA 57.402 33.333 0.00 0.00 0.00 1.40
298 299 8.810990 AAGAGGTACGATCTATCCCTAAATAG 57.189 38.462 0.00 0.00 0.00 1.73
299 300 7.931046 AGAGGTACGATCTATCCCTAAATAGT 58.069 38.462 0.00 0.00 32.18 2.12
300 301 9.055689 AGAGGTACGATCTATCCCTAAATAGTA 57.944 37.037 0.00 0.00 32.18 1.82
301 302 9.108284 GAGGTACGATCTATCCCTAAATAGTAC 57.892 40.741 0.00 0.00 32.67 2.73
302 303 8.834733 AGGTACGATCTATCCCTAAATAGTACT 58.165 37.037 0.00 0.00 33.45 2.73
303 304 9.108284 GGTACGATCTATCCCTAAATAGTACTC 57.892 40.741 0.00 0.00 33.45 2.59
304 305 9.889128 GTACGATCTATCCCTAAATAGTACTCT 57.111 37.037 0.00 0.00 31.54 3.24
323 324 9.132923 AGTACTCTAAATTATCCACGAATCTCA 57.867 33.333 0.00 0.00 0.00 3.27
324 325 9.745880 GTACTCTAAATTATCCACGAATCTCAA 57.254 33.333 0.00 0.00 0.00 3.02
326 327 9.265901 ACTCTAAATTATCCACGAATCTCAATG 57.734 33.333 0.00 0.00 0.00 2.82
327 328 9.481340 CTCTAAATTATCCACGAATCTCAATGA 57.519 33.333 0.00 0.00 0.00 2.57
328 329 9.261180 TCTAAATTATCCACGAATCTCAATGAC 57.739 33.333 0.00 0.00 0.00 3.06
329 330 6.867662 AATTATCCACGAATCTCAATGACC 57.132 37.500 0.00 0.00 0.00 4.02
330 331 3.912496 ATCCACGAATCTCAATGACCA 57.088 42.857 0.00 0.00 0.00 4.02
331 332 3.694043 TCCACGAATCTCAATGACCAA 57.306 42.857 0.00 0.00 0.00 3.67
332 333 3.599343 TCCACGAATCTCAATGACCAAG 58.401 45.455 0.00 0.00 0.00 3.61
333 334 3.260632 TCCACGAATCTCAATGACCAAGA 59.739 43.478 0.00 0.00 0.00 3.02
334 335 4.002982 CCACGAATCTCAATGACCAAGAA 58.997 43.478 0.00 0.00 0.00 2.52
335 336 4.455533 CCACGAATCTCAATGACCAAGAAA 59.544 41.667 0.00 0.00 0.00 2.52
336 337 5.048782 CCACGAATCTCAATGACCAAGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
337 338 6.082338 CACGAATCTCAATGACCAAGAAAAG 58.918 40.000 0.00 0.00 0.00 2.27
338 339 5.997746 ACGAATCTCAATGACCAAGAAAAGA 59.002 36.000 0.00 0.00 0.00 2.52
339 340 6.486657 ACGAATCTCAATGACCAAGAAAAGAA 59.513 34.615 0.00 0.00 0.00 2.52
340 341 7.175641 ACGAATCTCAATGACCAAGAAAAGAAT 59.824 33.333 0.00 0.00 0.00 2.40
341 342 8.025445 CGAATCTCAATGACCAAGAAAAGAATT 58.975 33.333 0.00 0.00 0.00 2.17
342 343 9.351570 GAATCTCAATGACCAAGAAAAGAATTC 57.648 33.333 0.00 0.00 0.00 2.17
343 344 7.219484 TCTCAATGACCAAGAAAAGAATTCC 57.781 36.000 0.65 0.00 0.00 3.01
344 345 7.006509 TCTCAATGACCAAGAAAAGAATTCCT 58.993 34.615 0.65 0.00 0.00 3.36
345 346 8.163408 TCTCAATGACCAAGAAAAGAATTCCTA 58.837 33.333 0.65 0.00 0.00 2.94
346 347 8.704849 TCAATGACCAAGAAAAGAATTCCTAA 57.295 30.769 0.65 0.00 0.00 2.69
347 348 9.312904 TCAATGACCAAGAAAAGAATTCCTAAT 57.687 29.630 0.65 0.00 0.00 1.73
348 349 9.933723 CAATGACCAAGAAAAGAATTCCTAATT 57.066 29.630 0.65 0.00 0.00 1.40
351 352 9.807921 TGACCAAGAAAAGAATTCCTAATTAGT 57.192 29.630 11.50 0.00 0.00 2.24
362 363 9.898152 AGAATTCCTAATTAGTCTGGAAAAGAG 57.102 33.333 11.50 0.00 41.22 2.85
363 364 9.674068 GAATTCCTAATTAGTCTGGAAAAGAGT 57.326 33.333 11.50 0.00 41.22 3.24
364 365 9.674068 AATTCCTAATTAGTCTGGAAAAGAGTC 57.326 33.333 11.50 0.00 41.22 3.36
365 366 6.864342 TCCTAATTAGTCTGGAAAAGAGTCG 58.136 40.000 11.50 0.00 39.43 4.18
366 367 6.436532 TCCTAATTAGTCTGGAAAAGAGTCGT 59.563 38.462 11.50 0.00 39.43 4.34
367 368 7.613022 TCCTAATTAGTCTGGAAAAGAGTCGTA 59.387 37.037 11.50 0.00 39.43 3.43
368 369 7.916450 CCTAATTAGTCTGGAAAAGAGTCGTAG 59.084 40.741 11.50 0.00 39.43 3.51
369 370 7.463961 AATTAGTCTGGAAAAGAGTCGTAGA 57.536 36.000 0.00 0.00 39.43 2.59
370 371 6.889301 TTAGTCTGGAAAAGAGTCGTAGAA 57.111 37.500 0.00 0.00 39.69 2.10
371 372 5.986501 AGTCTGGAAAAGAGTCGTAGAAT 57.013 39.130 0.00 0.00 39.69 2.40
372 373 5.715070 AGTCTGGAAAAGAGTCGTAGAATG 58.285 41.667 0.00 0.00 39.69 2.67
373 374 4.327627 GTCTGGAAAAGAGTCGTAGAATGC 59.672 45.833 0.00 0.00 39.69 3.56
374 375 3.596214 TGGAAAAGAGTCGTAGAATGCC 58.404 45.455 0.00 0.00 39.69 4.40
375 376 3.007506 TGGAAAAGAGTCGTAGAATGCCA 59.992 43.478 0.00 0.00 39.69 4.92
376 377 3.619038 GGAAAAGAGTCGTAGAATGCCAG 59.381 47.826 0.00 0.00 39.69 4.85
377 378 2.969628 AAGAGTCGTAGAATGCCAGG 57.030 50.000 0.00 0.00 39.69 4.45
378 379 2.145397 AGAGTCGTAGAATGCCAGGA 57.855 50.000 0.00 0.00 39.69 3.86
379 380 2.457598 AGAGTCGTAGAATGCCAGGAA 58.542 47.619 0.00 0.00 39.69 3.36
380 381 3.034635 AGAGTCGTAGAATGCCAGGAAT 58.965 45.455 0.00 0.00 39.69 3.01
381 382 3.068873 AGAGTCGTAGAATGCCAGGAATC 59.931 47.826 0.00 0.00 39.69 2.52
382 383 2.103263 AGTCGTAGAATGCCAGGAATCC 59.897 50.000 0.00 0.00 39.69 3.01
383 384 1.416401 TCGTAGAATGCCAGGAATCCC 59.584 52.381 0.00 0.00 0.00 3.85
384 385 1.140852 CGTAGAATGCCAGGAATCCCA 59.859 52.381 0.00 0.00 33.88 4.37
385 386 2.421388 CGTAGAATGCCAGGAATCCCAA 60.421 50.000 0.00 0.00 33.88 4.12
386 387 2.925966 AGAATGCCAGGAATCCCAAA 57.074 45.000 0.00 0.00 33.88 3.28
387 388 2.743553 AGAATGCCAGGAATCCCAAAG 58.256 47.619 0.00 0.00 33.88 2.77
388 389 2.312741 AGAATGCCAGGAATCCCAAAGA 59.687 45.455 0.00 0.00 33.88 2.52
389 390 2.925966 ATGCCAGGAATCCCAAAGAA 57.074 45.000 0.00 0.00 33.88 2.52
390 391 2.692709 TGCCAGGAATCCCAAAGAAA 57.307 45.000 0.00 0.00 33.88 2.52
391 392 2.528564 TGCCAGGAATCCCAAAGAAAG 58.471 47.619 0.00 0.00 33.88 2.62
392 393 2.109834 TGCCAGGAATCCCAAAGAAAGA 59.890 45.455 0.00 0.00 33.88 2.52
393 394 3.245730 TGCCAGGAATCCCAAAGAAAGAT 60.246 43.478 0.00 0.00 33.88 2.40
394 395 3.771479 GCCAGGAATCCCAAAGAAAGATT 59.229 43.478 0.00 0.00 33.01 2.40
395 396 4.223700 GCCAGGAATCCCAAAGAAAGATTT 59.776 41.667 0.00 0.00 30.52 2.17
396 397 5.280164 GCCAGGAATCCCAAAGAAAGATTTT 60.280 40.000 0.00 0.00 30.52 1.82
397 398 6.745190 GCCAGGAATCCCAAAGAAAGATTTTT 60.745 38.462 0.00 0.00 30.52 1.94
398 399 6.875726 CCAGGAATCCCAAAGAAAGATTTTTC 59.124 38.462 0.00 0.46 37.97 2.29
399 400 7.256439 CCAGGAATCCCAAAGAAAGATTTTTCT 60.256 37.037 5.43 5.43 43.90 2.52
438 439 9.520204 AATTATTCAGTCAATTCAAATAAGGCG 57.480 29.630 0.00 0.00 0.00 5.52
439 440 5.957842 TTCAGTCAATTCAAATAAGGCGT 57.042 34.783 0.00 0.00 0.00 5.68
440 441 7.624360 ATTCAGTCAATTCAAATAAGGCGTA 57.376 32.000 0.00 0.00 0.00 4.42
441 442 7.624360 TTCAGTCAATTCAAATAAGGCGTAT 57.376 32.000 0.00 0.00 0.00 3.06
442 443 7.246674 TCAGTCAATTCAAATAAGGCGTATC 57.753 36.000 0.00 0.00 0.00 2.24
443 444 7.047891 TCAGTCAATTCAAATAAGGCGTATCT 58.952 34.615 0.00 0.00 0.00 1.98
444 445 7.552687 TCAGTCAATTCAAATAAGGCGTATCTT 59.447 33.333 0.00 0.00 0.00 2.40
445 446 7.641411 CAGTCAATTCAAATAAGGCGTATCTTG 59.359 37.037 0.00 2.15 0.00 3.02
446 447 7.336931 AGTCAATTCAAATAAGGCGTATCTTGT 59.663 33.333 0.00 0.00 0.00 3.16
447 448 7.968405 GTCAATTCAAATAAGGCGTATCTTGTT 59.032 33.333 0.00 0.00 31.01 2.83
448 449 8.181573 TCAATTCAAATAAGGCGTATCTTGTTC 58.818 33.333 0.00 0.00 29.79 3.18
449 450 7.624360 ATTCAAATAAGGCGTATCTTGTTCA 57.376 32.000 0.00 0.00 29.79 3.18
450 451 7.441890 TTCAAATAAGGCGTATCTTGTTCAA 57.558 32.000 0.00 0.00 29.79 2.69
451 452 7.072177 TCAAATAAGGCGTATCTTGTTCAAG 57.928 36.000 6.24 6.24 29.79 3.02
452 453 5.485662 AATAAGGCGTATCTTGTTCAAGC 57.514 39.130 7.58 0.00 0.00 4.01
453 454 1.739067 AGGCGTATCTTGTTCAAGCC 58.261 50.000 7.58 6.24 43.07 4.35
454 455 1.003118 AGGCGTATCTTGTTCAAGCCA 59.997 47.619 12.76 0.60 44.97 4.75
455 456 1.810151 GGCGTATCTTGTTCAAGCCAA 59.190 47.619 7.58 0.00 42.37 4.52
456 457 2.423538 GGCGTATCTTGTTCAAGCCAAT 59.576 45.455 7.58 0.34 42.37 3.16
457 458 3.625764 GGCGTATCTTGTTCAAGCCAATA 59.374 43.478 7.58 0.00 42.37 1.90
458 459 4.095782 GGCGTATCTTGTTCAAGCCAATAA 59.904 41.667 7.58 0.00 42.37 1.40
459 460 5.392595 GGCGTATCTTGTTCAAGCCAATAAA 60.393 40.000 7.58 0.00 42.37 1.40
460 461 6.265577 GCGTATCTTGTTCAAGCCAATAAAT 58.734 36.000 7.58 0.00 0.00 1.40
461 462 7.414436 GCGTATCTTGTTCAAGCCAATAAATA 58.586 34.615 7.58 0.00 0.00 1.40
462 463 7.587757 GCGTATCTTGTTCAAGCCAATAAATAG 59.412 37.037 7.58 0.00 0.00 1.73
463 464 8.826710 CGTATCTTGTTCAAGCCAATAAATAGA 58.173 33.333 7.58 0.00 0.00 1.98
465 466 7.088589 TCTTGTTCAAGCCAATAAATAGAGC 57.911 36.000 7.58 0.00 0.00 4.09
882 891 4.017591 TCTTTGGGATTCCTGGCATTCTAA 60.018 41.667 2.01 0.00 0.00 2.10
1878 4291 3.384467 TCTTTTTGGAAGGTCAAGCCAAG 59.616 43.478 0.00 0.00 42.15 3.61
1880 4293 2.978156 TTGGAAGGTCAAGCCAAGAT 57.022 45.000 0.00 0.00 40.61 2.40
1881 4294 2.496899 TGGAAGGTCAAGCCAAGATC 57.503 50.000 0.00 0.00 40.61 2.75
1882 4295 1.004745 TGGAAGGTCAAGCCAAGATCC 59.995 52.381 0.00 0.00 40.61 3.36
1883 4296 1.283321 GGAAGGTCAAGCCAAGATCCT 59.717 52.381 0.00 0.00 40.61 3.24
1884 4297 2.291217 GGAAGGTCAAGCCAAGATCCTT 60.291 50.000 0.00 0.00 40.61 3.36
1885 4298 2.797177 AGGTCAAGCCAAGATCCTTC 57.203 50.000 0.00 0.00 40.61 3.46
1886 4299 1.283321 AGGTCAAGCCAAGATCCTTCC 59.717 52.381 0.00 0.00 40.61 3.46
1887 4300 1.004745 GGTCAAGCCAAGATCCTTCCA 59.995 52.381 0.00 0.00 37.17 3.53
1888 4301 2.555227 GGTCAAGCCAAGATCCTTCCAA 60.555 50.000 0.00 0.00 37.17 3.53
1890 4303 2.644299 TCAAGCCAAGATCCTTCCAAGA 59.356 45.455 0.00 0.00 0.00 3.02
1891 4304 3.074390 TCAAGCCAAGATCCTTCCAAGAA 59.926 43.478 0.00 0.00 0.00 2.52
1893 4306 2.025510 AGCCAAGATCCTTCCAAGAAGG 60.026 50.000 15.85 15.85 38.78 3.46
1894 4307 2.373224 CCAAGATCCTTCCAAGAAGGC 58.627 52.381 16.95 5.84 37.34 4.35
1895 4308 2.012673 CAAGATCCTTCCAAGAAGGCG 58.987 52.381 16.95 0.00 37.34 5.52
1896 4309 1.573108 AGATCCTTCCAAGAAGGCGA 58.427 50.000 16.95 3.24 37.34 5.54
1897 4310 1.484240 AGATCCTTCCAAGAAGGCGAG 59.516 52.381 16.95 0.00 37.34 5.03
1898 4311 0.107459 ATCCTTCCAAGAAGGCGAGC 60.107 55.000 16.95 0.00 37.34 5.03
1899 4312 1.194781 TCCTTCCAAGAAGGCGAGCT 61.195 55.000 16.95 0.00 37.34 4.09
1900 4313 0.322008 CCTTCCAAGAAGGCGAGCTT 60.322 55.000 10.31 0.00 37.29 3.74
1901 4314 0.801251 CTTCCAAGAAGGCGAGCTTG 59.199 55.000 0.00 0.00 40.81 4.01
1902 4315 0.108585 TTCCAAGAAGGCGAGCTTGT 59.891 50.000 2.14 0.00 39.79 3.16
1903 4316 0.603707 TCCAAGAAGGCGAGCTTGTG 60.604 55.000 2.14 0.00 39.79 3.33
1904 4317 1.208614 CAAGAAGGCGAGCTTGTGC 59.791 57.895 2.14 0.08 37.35 4.57
1916 4329 4.892965 TTGTGCTGGCCGGCTGTT 62.893 61.111 35.60 0.00 0.00 3.16
1926 4339 2.125552 CGGCTGTTCGCTGGATCA 60.126 61.111 0.00 0.00 41.47 2.92
1927 4340 2.169789 CGGCTGTTCGCTGGATCAG 61.170 63.158 0.00 0.00 41.47 2.90
1936 4349 2.202987 CTGGATCAGCCGGAGCAC 60.203 66.667 5.05 0.00 46.81 4.40
1937 4350 3.002583 TGGATCAGCCGGAGCACA 61.003 61.111 5.05 0.00 43.56 4.57
1938 4351 2.268920 GGATCAGCCGGAGCACAA 59.731 61.111 5.05 0.00 43.56 3.33
1939 4352 1.817099 GGATCAGCCGGAGCACAAG 60.817 63.158 5.05 0.00 43.56 3.16
1940 4353 1.219124 GATCAGCCGGAGCACAAGA 59.781 57.895 5.05 0.00 43.56 3.02
1941 4354 0.179062 GATCAGCCGGAGCACAAGAT 60.179 55.000 5.05 0.00 43.56 2.40
1942 4355 0.179062 ATCAGCCGGAGCACAAGATC 60.179 55.000 5.05 0.00 43.56 2.75
1943 4356 2.169789 CAGCCGGAGCACAAGATCG 61.170 63.158 5.05 0.00 43.56 3.69
1944 4357 3.567797 GCCGGAGCACAAGATCGC 61.568 66.667 5.05 0.00 39.53 4.58
1945 4358 2.892425 CCGGAGCACAAGATCGCC 60.892 66.667 0.00 0.00 0.00 5.54
1946 4359 2.185350 CGGAGCACAAGATCGCCT 59.815 61.111 0.00 0.00 0.00 5.52
1947 4360 1.448540 CGGAGCACAAGATCGCCTT 60.449 57.895 0.00 0.00 34.91 4.35
1948 4361 1.424493 CGGAGCACAAGATCGCCTTC 61.424 60.000 0.00 0.00 31.42 3.46
1949 4362 0.107945 GGAGCACAAGATCGCCTTCT 60.108 55.000 0.00 0.00 31.42 2.85
1950 4363 1.677217 GGAGCACAAGATCGCCTTCTT 60.677 52.381 0.00 0.00 36.38 2.52
1956 4369 2.012673 CAAGATCGCCTTCTTGGAAGG 58.987 52.381 18.76 18.76 45.76 3.46
1957 4370 1.573108 AGATCGCCTTCTTGGAAGGA 58.427 50.000 25.05 9.63 39.81 3.36
1958 4371 2.122768 AGATCGCCTTCTTGGAAGGAT 58.877 47.619 25.05 13.34 39.81 3.24
1959 4372 2.103941 AGATCGCCTTCTTGGAAGGATC 59.896 50.000 25.05 19.33 39.81 3.36
1960 4373 1.573108 TCGCCTTCTTGGAAGGATCT 58.427 50.000 25.05 0.00 39.81 2.75
1961 4374 1.909302 TCGCCTTCTTGGAAGGATCTT 59.091 47.619 25.05 0.00 39.81 2.40
1962 4375 2.012673 CGCCTTCTTGGAAGGATCTTG 58.987 52.381 25.05 8.72 39.81 3.02
1963 4376 2.373224 GCCTTCTTGGAAGGATCTTGG 58.627 52.381 25.05 3.47 39.81 3.61
1964 4377 2.373224 CCTTCTTGGAAGGATCTTGGC 58.627 52.381 18.39 0.00 39.81 4.52
1965 4378 2.025510 CCTTCTTGGAAGGATCTTGGCT 60.026 50.000 18.39 0.00 39.81 4.75
1966 4379 3.563043 CCTTCTTGGAAGGATCTTGGCTT 60.563 47.826 18.39 0.00 39.81 4.35
1967 4380 3.077484 TCTTGGAAGGATCTTGGCTTG 57.923 47.619 0.00 0.00 0.00 4.01
1968 4381 2.644299 TCTTGGAAGGATCTTGGCTTGA 59.356 45.455 0.00 0.00 0.00 3.02
1969 4382 2.496899 TGGAAGGATCTTGGCTTGAC 57.503 50.000 0.00 0.00 0.00 3.18
1970 4383 1.004745 TGGAAGGATCTTGGCTTGACC 59.995 52.381 0.00 0.00 39.84 4.02
1971 4384 1.283321 GGAAGGATCTTGGCTTGACCT 59.717 52.381 0.00 0.00 40.22 3.85
1972 4385 2.291217 GGAAGGATCTTGGCTTGACCTT 60.291 50.000 0.00 0.00 39.89 3.50
1973 4386 2.797177 AGGATCTTGGCTTGACCTTC 57.203 50.000 0.00 0.00 40.22 3.46
1974 4387 1.283321 AGGATCTTGGCTTGACCTTCC 59.717 52.381 0.00 0.00 40.22 3.46
1975 4388 1.373570 GATCTTGGCTTGACCTTCCG 58.626 55.000 0.00 0.00 40.22 4.30
1976 4389 0.035056 ATCTTGGCTTGACCTTCCGG 60.035 55.000 0.00 0.00 40.22 5.14
1978 4391 0.537371 CTTGGCTTGACCTTCCGGTT 60.537 55.000 0.00 0.00 45.73 4.44
1979 4392 0.821711 TTGGCTTGACCTTCCGGTTG 60.822 55.000 0.00 0.00 45.73 3.77
1980 4393 1.228154 GGCTTGACCTTCCGGTTGT 60.228 57.895 0.00 0.00 45.73 3.32
1981 4394 1.515521 GGCTTGACCTTCCGGTTGTG 61.516 60.000 0.00 0.00 45.73 3.33
1982 4395 1.515521 GCTTGACCTTCCGGTTGTGG 61.516 60.000 0.00 2.13 45.73 4.17
1983 4396 0.179029 CTTGACCTTCCGGTTGTGGT 60.179 55.000 0.00 5.71 45.73 4.16
1984 4397 1.071071 CTTGACCTTCCGGTTGTGGTA 59.929 52.381 0.00 0.00 45.73 3.25
1985 4398 1.129917 TGACCTTCCGGTTGTGGTAA 58.870 50.000 0.00 0.00 45.73 2.85
1986 4399 1.700739 TGACCTTCCGGTTGTGGTAAT 59.299 47.619 0.00 0.00 45.73 1.89
1987 4400 2.081462 GACCTTCCGGTTGTGGTAATG 58.919 52.381 0.00 0.00 45.73 1.90
1988 4401 1.271707 ACCTTCCGGTTGTGGTAATGG 60.272 52.381 0.00 0.00 42.13 3.16
1989 4402 0.808755 CTTCCGGTTGTGGTAATGGC 59.191 55.000 0.00 0.00 0.00 4.40
1990 4403 0.956410 TTCCGGTTGTGGTAATGGCG 60.956 55.000 0.00 0.00 0.00 5.69
1991 4404 1.673009 CCGGTTGTGGTAATGGCGT 60.673 57.895 0.00 0.00 0.00 5.68
1992 4405 0.391395 CCGGTTGTGGTAATGGCGTA 60.391 55.000 0.00 0.00 0.00 4.42
1993 4406 1.440708 CGGTTGTGGTAATGGCGTAA 58.559 50.000 0.00 0.00 0.00 3.18
1994 4407 1.805345 CGGTTGTGGTAATGGCGTAAA 59.195 47.619 0.00 0.00 0.00 2.01
1995 4408 2.413108 CGGTTGTGGTAATGGCGTAAAC 60.413 50.000 0.00 0.00 0.00 2.01
1996 4409 2.095110 GGTTGTGGTAATGGCGTAAACC 60.095 50.000 4.58 4.58 0.00 3.27
1997 4410 1.823797 TGTGGTAATGGCGTAAACCC 58.176 50.000 8.28 2.25 0.00 4.11
1998 4411 1.351683 TGTGGTAATGGCGTAAACCCT 59.648 47.619 8.28 0.00 0.00 4.34
1999 4412 1.741145 GTGGTAATGGCGTAAACCCTG 59.259 52.381 8.28 0.00 0.00 4.45
2000 4413 0.736636 GGTAATGGCGTAAACCCTGC 59.263 55.000 0.66 0.00 0.00 4.85
2001 4414 1.680860 GGTAATGGCGTAAACCCTGCT 60.681 52.381 0.66 0.00 0.00 4.24
2002 4415 1.400494 GTAATGGCGTAAACCCTGCTG 59.600 52.381 0.00 0.00 0.00 4.41
2003 4416 0.965363 AATGGCGTAAACCCTGCTGG 60.965 55.000 1.89 1.89 41.37 4.85
2012 4425 2.109799 CCCTGCTGGTAGATGGCG 59.890 66.667 9.00 0.00 0.00 5.69
2013 4426 2.109799 CCTGCTGGTAGATGGCGG 59.890 66.667 0.51 0.00 0.00 6.13
2014 4427 2.434843 CCTGCTGGTAGATGGCGGA 61.435 63.158 0.51 0.00 34.61 5.54
2015 4428 1.227380 CTGCTGGTAGATGGCGGAC 60.227 63.158 0.00 0.00 34.61 4.79
2016 4429 2.109181 GCTGGTAGATGGCGGACC 59.891 66.667 0.00 0.00 0.00 4.46
2017 4430 2.417516 CTGGTAGATGGCGGACCG 59.582 66.667 10.29 10.29 39.70 4.79
2018 4431 3.151710 TGGTAGATGGCGGACCGG 61.152 66.667 17.22 0.00 39.70 5.28
2028 4441 3.449227 CGGACCGGCTGAGTGCTA 61.449 66.667 5.81 0.00 42.39 3.49
2029 4442 2.978824 GGACCGGCTGAGTGCTAA 59.021 61.111 0.00 0.00 42.39 3.09
2030 4443 1.448013 GGACCGGCTGAGTGCTAAC 60.448 63.158 0.00 0.00 42.39 2.34
2031 4444 1.292223 GACCGGCTGAGTGCTAACA 59.708 57.895 0.00 0.00 42.39 2.41
2032 4445 0.737715 GACCGGCTGAGTGCTAACAG 60.738 60.000 0.00 0.00 42.39 3.16
2036 4449 4.192000 CTGAGTGCTAACAGCCGG 57.808 61.111 0.00 0.00 41.51 6.13
2037 4450 2.047274 TGAGTGCTAACAGCCGGC 60.047 61.111 21.89 21.89 41.51 6.13
2038 4451 2.820037 GAGTGCTAACAGCCGGCC 60.820 66.667 26.15 7.06 41.51 6.13
2039 4452 4.410400 AGTGCTAACAGCCGGCCC 62.410 66.667 26.15 5.30 41.51 5.80
2040 4453 4.410400 GTGCTAACAGCCGGCCCT 62.410 66.667 26.15 10.63 41.51 5.19
2041 4454 4.096003 TGCTAACAGCCGGCCCTC 62.096 66.667 26.15 7.31 41.51 4.30
2042 4455 3.787001 GCTAACAGCCGGCCCTCT 61.787 66.667 26.15 8.10 34.48 3.69
2043 4456 2.990479 CTAACAGCCGGCCCTCTT 59.010 61.111 26.15 11.74 0.00 2.85
2044 4457 1.153349 CTAACAGCCGGCCCTCTTC 60.153 63.158 26.15 0.00 0.00 2.87
2045 4458 2.595009 CTAACAGCCGGCCCTCTTCC 62.595 65.000 26.15 0.00 0.00 3.46
2047 4460 4.479993 CAGCCGGCCCTCTTCCAG 62.480 72.222 26.15 0.00 0.00 3.86
2050 4463 4.479993 CCGGCCCTCTTCCAGCAG 62.480 72.222 0.00 0.00 0.00 4.24
2051 4464 4.479993 CGGCCCTCTTCCAGCAGG 62.480 72.222 0.00 0.00 0.00 4.85
2052 4465 3.334054 GGCCCTCTTCCAGCAGGT 61.334 66.667 0.00 0.00 35.89 4.00
2053 4466 2.270527 GCCCTCTTCCAGCAGGTC 59.729 66.667 0.00 0.00 35.89 3.85
2054 4467 2.581354 CCCTCTTCCAGCAGGTCG 59.419 66.667 0.00 0.00 35.89 4.79
2055 4468 1.984570 CCCTCTTCCAGCAGGTCGA 60.985 63.158 0.00 0.00 35.89 4.20
2056 4469 1.216710 CCTCTTCCAGCAGGTCGAC 59.783 63.158 7.13 7.13 35.89 4.20
2057 4470 1.536073 CCTCTTCCAGCAGGTCGACA 61.536 60.000 18.91 0.00 35.89 4.35
2058 4471 0.389166 CTCTTCCAGCAGGTCGACAC 60.389 60.000 18.91 6.91 35.89 3.67
2059 4472 1.374758 CTTCCAGCAGGTCGACACC 60.375 63.158 18.91 0.62 44.19 4.16
2067 4480 4.863984 GGTCGACACCGTCTTCTC 57.136 61.111 18.91 0.00 37.05 2.87
2068 4481 1.954528 GGTCGACACCGTCTTCTCA 59.045 57.895 18.91 0.00 37.05 3.27
2069 4482 0.386985 GGTCGACACCGTCTTCTCAC 60.387 60.000 18.91 0.00 37.05 3.51
2070 4483 0.725118 GTCGACACCGTCTTCTCACG 60.725 60.000 11.55 0.00 39.61 4.35
2071 4484 2.081212 CGACACCGTCTTCTCACGC 61.081 63.158 0.00 0.00 38.52 5.34
2072 4485 1.286260 GACACCGTCTTCTCACGCT 59.714 57.895 0.00 0.00 38.52 5.07
2073 4486 0.318784 GACACCGTCTTCTCACGCTT 60.319 55.000 0.00 0.00 38.52 4.68
2074 4487 0.318784 ACACCGTCTTCTCACGCTTC 60.319 55.000 0.00 0.00 38.52 3.86
2075 4488 1.009389 CACCGTCTTCTCACGCTTCC 61.009 60.000 0.00 0.00 38.52 3.46
2076 4489 1.179814 ACCGTCTTCTCACGCTTCCT 61.180 55.000 0.00 0.00 38.52 3.36
2077 4490 0.038159 CCGTCTTCTCACGCTTCCTT 60.038 55.000 0.00 0.00 38.52 3.36
2078 4491 1.063806 CGTCTTCTCACGCTTCCTTG 58.936 55.000 0.00 0.00 31.96 3.61
2079 4492 1.433534 GTCTTCTCACGCTTCCTTGG 58.566 55.000 0.00 0.00 0.00 3.61
2080 4493 0.320771 TCTTCTCACGCTTCCTTGGC 60.321 55.000 0.00 0.00 0.00 4.52
2081 4494 1.301677 CTTCTCACGCTTCCTTGGCC 61.302 60.000 0.00 0.00 0.00 5.36
2082 4495 1.768684 TTCTCACGCTTCCTTGGCCT 61.769 55.000 3.32 0.00 0.00 5.19
2083 4496 1.743252 CTCACGCTTCCTTGGCCTC 60.743 63.158 3.32 0.00 0.00 4.70
2084 4497 2.747855 CACGCTTCCTTGGCCTCC 60.748 66.667 3.32 0.00 0.00 4.30
2085 4498 4.394712 ACGCTTCCTTGGCCTCCG 62.395 66.667 3.32 0.00 0.00 4.63
2096 4509 4.509737 GCCTCCGCCTCCGTGTAC 62.510 72.222 0.00 0.00 0.00 2.90
2097 4510 3.066190 CCTCCGCCTCCGTGTACA 61.066 66.667 0.00 0.00 0.00 2.90
2098 4511 2.423898 CCTCCGCCTCCGTGTACAT 61.424 63.158 0.00 0.00 0.00 2.29
2099 4512 1.226974 CTCCGCCTCCGTGTACATG 60.227 63.158 8.18 8.18 0.00 3.21
2100 4513 2.202878 CCGCCTCCGTGTACATGG 60.203 66.667 25.75 25.75 38.85 3.66
2101 4514 2.577059 CGCCTCCGTGTACATGGT 59.423 61.111 29.13 0.00 38.61 3.55
2102 4515 1.809619 CGCCTCCGTGTACATGGTG 60.810 63.158 29.13 26.23 38.61 4.17
2103 4516 1.594833 GCCTCCGTGTACATGGTGA 59.405 57.895 29.44 14.70 38.61 4.02
2104 4517 0.739813 GCCTCCGTGTACATGGTGAC 60.740 60.000 29.44 19.09 38.61 3.67
2105 4518 0.108329 CCTCCGTGTACATGGTGACC 60.108 60.000 29.44 0.00 38.61 4.02
2106 4519 0.108329 CTCCGTGTACATGGTGACCC 60.108 60.000 29.13 0.00 38.61 4.46
2107 4520 1.447140 CCGTGTACATGGTGACCCG 60.447 63.158 23.81 8.44 32.81 5.28
2108 4521 1.587568 CGTGTACATGGTGACCCGA 59.412 57.895 7.22 0.00 0.00 5.14
2109 4522 0.457853 CGTGTACATGGTGACCCGAG 60.458 60.000 7.22 0.00 0.00 4.63
2110 4523 0.108329 GTGTACATGGTGACCCGAGG 60.108 60.000 0.00 0.00 0.00 4.63
2111 4524 1.153429 GTACATGGTGACCCGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
2112 4525 2.717044 TACATGGTGACCCGAGGCG 61.717 63.158 0.00 0.00 0.00 5.52
2113 4526 3.770040 CATGGTGACCCGAGGCGA 61.770 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.388735 TGGAATCACGCTCTGTAGGAT 58.611 47.619 0.00 0.00 0.00 3.24
2 3 2.748605 GATGGAATCACGCTCTGTAGG 58.251 52.381 0.00 0.00 44.70 3.18
14 15 7.093354 TGCTTCGACATAAGATAGATGGAATC 58.907 38.462 0.00 0.00 46.04 2.52
15 16 6.997655 TGCTTCGACATAAGATAGATGGAAT 58.002 36.000 0.00 0.00 0.00 3.01
16 17 6.265422 TCTGCTTCGACATAAGATAGATGGAA 59.735 38.462 0.00 0.00 0.00 3.53
17 18 5.770162 TCTGCTTCGACATAAGATAGATGGA 59.230 40.000 0.00 0.00 0.00 3.41
18 19 6.018589 TCTGCTTCGACATAAGATAGATGG 57.981 41.667 0.00 0.00 0.00 3.51
19 20 6.676950 ACTCTGCTTCGACATAAGATAGATG 58.323 40.000 0.00 0.00 0.00 2.90
20 21 6.892658 ACTCTGCTTCGACATAAGATAGAT 57.107 37.500 0.00 0.00 0.00 1.98
21 22 7.803279 TTACTCTGCTTCGACATAAGATAGA 57.197 36.000 0.00 0.00 0.00 1.98
24 25 9.250624 GTTATTTACTCTGCTTCGACATAAGAT 57.749 33.333 0.00 0.00 0.00 2.40
25 26 8.467598 AGTTATTTACTCTGCTTCGACATAAGA 58.532 33.333 0.00 0.00 28.23 2.10
26 27 8.635877 AGTTATTTACTCTGCTTCGACATAAG 57.364 34.615 0.00 0.00 28.23 1.73
27 28 8.997621 AAGTTATTTACTCTGCTTCGACATAA 57.002 30.769 0.00 0.00 35.54 1.90
29 30 8.870879 GTTAAGTTATTTACTCTGCTTCGACAT 58.129 33.333 0.00 0.00 35.54 3.06
30 31 7.868922 TGTTAAGTTATTTACTCTGCTTCGACA 59.131 33.333 0.00 0.00 35.54 4.35
31 32 8.236084 TGTTAAGTTATTTACTCTGCTTCGAC 57.764 34.615 0.00 0.00 35.54 4.20
32 33 8.821147 TTGTTAAGTTATTTACTCTGCTTCGA 57.179 30.769 0.00 0.00 35.54 3.71
33 34 9.872757 TTTTGTTAAGTTATTTACTCTGCTTCG 57.127 29.630 0.00 0.00 35.54 3.79
64 65 8.650490 AGGTCAAATTGAAATTGGAGTTACAAT 58.350 29.630 0.00 0.00 42.56 2.71
65 66 8.017418 AGGTCAAATTGAAATTGGAGTTACAA 57.983 30.769 0.00 0.00 29.25 2.41
66 67 7.255801 GGAGGTCAAATTGAAATTGGAGTTACA 60.256 37.037 0.00 0.00 29.25 2.41
67 68 7.039714 AGGAGGTCAAATTGAAATTGGAGTTAC 60.040 37.037 0.00 0.00 29.25 2.50
68 69 7.010160 AGGAGGTCAAATTGAAATTGGAGTTA 58.990 34.615 0.00 0.00 29.25 2.24
69 70 5.840693 AGGAGGTCAAATTGAAATTGGAGTT 59.159 36.000 0.00 0.00 29.25 3.01
70 71 5.397360 AGGAGGTCAAATTGAAATTGGAGT 58.603 37.500 0.00 0.00 29.25 3.85
71 72 5.713861 AGAGGAGGTCAAATTGAAATTGGAG 59.286 40.000 0.00 0.00 29.25 3.86
72 73 5.644188 AGAGGAGGTCAAATTGAAATTGGA 58.356 37.500 0.00 0.00 0.00 3.53
73 74 5.713861 AGAGAGGAGGTCAAATTGAAATTGG 59.286 40.000 0.00 0.00 0.00 3.16
74 75 6.349944 CCAGAGAGGAGGTCAAATTGAAATTG 60.350 42.308 0.00 0.00 41.22 2.32
75 76 5.713861 CCAGAGAGGAGGTCAAATTGAAATT 59.286 40.000 0.00 0.00 41.22 1.82
76 77 5.222213 ACCAGAGAGGAGGTCAAATTGAAAT 60.222 40.000 0.00 0.00 41.22 2.17
77 78 4.104738 ACCAGAGAGGAGGTCAAATTGAAA 59.895 41.667 0.00 0.00 41.22 2.69
78 79 3.652869 ACCAGAGAGGAGGTCAAATTGAA 59.347 43.478 0.00 0.00 41.22 2.69
79 80 3.251484 ACCAGAGAGGAGGTCAAATTGA 58.749 45.455 0.00 0.00 41.22 2.57
80 81 3.710209 ACCAGAGAGGAGGTCAAATTG 57.290 47.619 0.00 0.00 41.22 2.32
87 88 0.334676 CTCCAGACCAGAGAGGAGGT 59.665 60.000 0.00 0.00 43.07 3.85
88 89 3.205815 CTCCAGACCAGAGAGGAGG 57.794 63.158 0.00 0.00 43.07 4.30
92 93 0.334676 ACCTCCTCCAGACCAGAGAG 59.665 60.000 0.00 0.00 32.86 3.20
93 94 0.333312 GACCTCCTCCAGACCAGAGA 59.667 60.000 0.00 0.00 32.86 3.10
94 95 0.040351 TGACCTCCTCCAGACCAGAG 59.960 60.000 0.00 0.00 0.00 3.35
95 96 0.487325 TTGACCTCCTCCAGACCAGA 59.513 55.000 0.00 0.00 0.00 3.86
96 97 1.484240 GATTGACCTCCTCCAGACCAG 59.516 57.143 0.00 0.00 0.00 4.00
97 98 1.203300 TGATTGACCTCCTCCAGACCA 60.203 52.381 0.00 0.00 0.00 4.02
98 99 1.573108 TGATTGACCTCCTCCAGACC 58.427 55.000 0.00 0.00 0.00 3.85
99 100 3.703001 TTTGATTGACCTCCTCCAGAC 57.297 47.619 0.00 0.00 0.00 3.51
100 101 4.722526 TTTTTGATTGACCTCCTCCAGA 57.277 40.909 0.00 0.00 0.00 3.86
121 122 8.645110 AGTTGGATCTTTGATTGAGTCATTTTT 58.355 29.630 0.00 0.00 36.54 1.94
122 123 8.086522 CAGTTGGATCTTTGATTGAGTCATTTT 58.913 33.333 0.00 0.00 36.54 1.82
123 124 7.449395 TCAGTTGGATCTTTGATTGAGTCATTT 59.551 33.333 0.00 0.00 36.54 2.32
124 125 6.944290 TCAGTTGGATCTTTGATTGAGTCATT 59.056 34.615 0.00 0.00 36.54 2.57
125 126 6.479006 TCAGTTGGATCTTTGATTGAGTCAT 58.521 36.000 0.00 0.00 36.54 3.06
126 127 5.868454 TCAGTTGGATCTTTGATTGAGTCA 58.132 37.500 0.00 0.00 34.25 3.41
127 128 6.998968 ATCAGTTGGATCTTTGATTGAGTC 57.001 37.500 0.00 0.00 0.00 3.36
140 141 1.224592 GCGTGGGGATCAGTTGGAT 59.775 57.895 0.00 0.00 39.53 3.41
141 142 2.668632 GCGTGGGGATCAGTTGGA 59.331 61.111 0.00 0.00 0.00 3.53
142 143 2.438434 GGCGTGGGGATCAGTTGG 60.438 66.667 0.00 0.00 0.00 3.77
143 144 1.746615 CAGGCGTGGGGATCAGTTG 60.747 63.158 0.00 0.00 0.00 3.16
144 145 0.907704 TACAGGCGTGGGGATCAGTT 60.908 55.000 11.67 0.00 0.00 3.16
145 146 0.691078 ATACAGGCGTGGGGATCAGT 60.691 55.000 11.67 0.00 0.00 3.41
146 147 0.469917 AATACAGGCGTGGGGATCAG 59.530 55.000 11.67 0.00 0.00 2.90
147 148 0.180171 CAATACAGGCGTGGGGATCA 59.820 55.000 11.67 0.00 0.00 2.92
148 149 1.166531 GCAATACAGGCGTGGGGATC 61.167 60.000 11.67 0.00 0.00 3.36
149 150 1.152963 GCAATACAGGCGTGGGGAT 60.153 57.895 11.67 0.00 0.00 3.85
150 151 2.130821 TTGCAATACAGGCGTGGGGA 62.131 55.000 11.67 0.00 0.00 4.81
151 152 1.247419 TTTGCAATACAGGCGTGGGG 61.247 55.000 11.67 0.00 0.00 4.96
152 153 0.817013 ATTTGCAATACAGGCGTGGG 59.183 50.000 11.67 0.00 0.00 4.61
153 154 2.538737 CGTATTTGCAATACAGGCGTGG 60.539 50.000 11.67 0.00 0.00 4.94
154 155 2.704037 CGTATTTGCAATACAGGCGTG 58.296 47.619 0.00 4.53 0.00 5.34
155 156 1.063469 GCGTATTTGCAATACAGGCGT 59.937 47.619 0.00 0.00 34.15 5.68
156 157 1.063321 TGCGTATTTGCAATACAGGCG 59.937 47.619 0.00 1.13 43.02 5.52
157 158 2.097466 ACTGCGTATTTGCAATACAGGC 59.903 45.455 0.00 6.58 45.74 4.85
158 159 3.373748 TGACTGCGTATTTGCAATACAGG 59.626 43.478 0.00 0.00 45.74 4.00
159 160 4.334443 GTGACTGCGTATTTGCAATACAG 58.666 43.478 0.00 6.56 45.74 2.74
160 161 3.181525 CGTGACTGCGTATTTGCAATACA 60.182 43.478 0.00 0.00 45.74 2.29
161 162 3.061563 TCGTGACTGCGTATTTGCAATAC 59.938 43.478 0.00 4.59 45.74 1.89
162 163 3.254892 TCGTGACTGCGTATTTGCAATA 58.745 40.909 0.00 0.00 45.74 1.90
163 164 2.073056 TCGTGACTGCGTATTTGCAAT 58.927 42.857 0.00 0.00 45.74 3.56
164 165 1.503294 TCGTGACTGCGTATTTGCAA 58.497 45.000 0.00 0.00 45.74 4.08
165 166 1.503294 TTCGTGACTGCGTATTTGCA 58.497 45.000 0.00 0.00 43.95 4.08
166 167 2.806288 ATTCGTGACTGCGTATTTGC 57.194 45.000 0.00 0.00 0.00 3.68
167 168 5.432157 GGATTATTCGTGACTGCGTATTTG 58.568 41.667 0.00 0.00 0.00 2.32
168 169 4.510340 GGGATTATTCGTGACTGCGTATTT 59.490 41.667 0.00 0.00 0.00 1.40
169 170 4.056050 GGGATTATTCGTGACTGCGTATT 58.944 43.478 0.00 0.00 0.00 1.89
170 171 3.650139 GGGATTATTCGTGACTGCGTAT 58.350 45.455 0.00 0.00 0.00 3.06
171 172 2.542205 CGGGATTATTCGTGACTGCGTA 60.542 50.000 0.00 0.00 0.00 4.42
172 173 1.801395 CGGGATTATTCGTGACTGCGT 60.801 52.381 0.00 0.00 0.00 5.24
173 174 0.852777 CGGGATTATTCGTGACTGCG 59.147 55.000 0.00 0.00 0.00 5.18
174 175 0.582005 GCGGGATTATTCGTGACTGC 59.418 55.000 0.00 0.00 0.00 4.40
175 176 2.225068 AGCGGGATTATTCGTGACTG 57.775 50.000 0.00 0.00 0.00 3.51
176 177 4.142004 ACTTTAGCGGGATTATTCGTGACT 60.142 41.667 0.00 0.00 0.00 3.41
177 178 4.117685 ACTTTAGCGGGATTATTCGTGAC 58.882 43.478 0.00 0.00 0.00 3.67
178 179 4.395959 ACTTTAGCGGGATTATTCGTGA 57.604 40.909 0.00 0.00 0.00 4.35
179 180 6.780706 ATTACTTTAGCGGGATTATTCGTG 57.219 37.500 0.00 0.00 0.00 4.35
180 181 7.039504 TCCTATTACTTTAGCGGGATTATTCGT 60.040 37.037 0.00 0.00 0.00 3.85
181 182 7.318141 TCCTATTACTTTAGCGGGATTATTCG 58.682 38.462 0.00 0.00 0.00 3.34
182 183 9.668497 ATTCCTATTACTTTAGCGGGATTATTC 57.332 33.333 0.00 0.00 0.00 1.75
186 187 8.101419 CCTAATTCCTATTACTTTAGCGGGATT 58.899 37.037 0.00 0.00 0.00 3.01
187 188 7.621796 CCTAATTCCTATTACTTTAGCGGGAT 58.378 38.462 0.00 0.00 0.00 3.85
188 189 6.519551 GCCTAATTCCTATTACTTTAGCGGGA 60.520 42.308 0.00 0.00 0.00 5.14
189 190 5.642491 GCCTAATTCCTATTACTTTAGCGGG 59.358 44.000 0.00 0.00 0.00 6.13
190 191 5.642491 GGCCTAATTCCTATTACTTTAGCGG 59.358 44.000 0.00 0.00 0.00 5.52
191 192 6.465084 AGGCCTAATTCCTATTACTTTAGCG 58.535 40.000 1.29 0.00 30.79 4.26
192 193 9.438228 CTTAGGCCTAATTCCTATTACTTTAGC 57.562 37.037 25.37 0.00 36.20 3.09
195 196 8.148999 CGTCTTAGGCCTAATTCCTATTACTTT 58.851 37.037 25.37 0.00 36.20 2.66
196 197 7.508296 TCGTCTTAGGCCTAATTCCTATTACTT 59.492 37.037 25.37 0.00 36.20 2.24
197 198 7.008941 TCGTCTTAGGCCTAATTCCTATTACT 58.991 38.462 25.37 0.00 36.20 2.24
198 199 7.224522 TCGTCTTAGGCCTAATTCCTATTAC 57.775 40.000 25.37 11.83 36.20 1.89
199 200 8.431910 AATCGTCTTAGGCCTAATTCCTATTA 57.568 34.615 25.37 6.80 36.20 0.98
200 201 6.936968 ATCGTCTTAGGCCTAATTCCTATT 57.063 37.500 25.37 5.35 36.20 1.73
201 202 6.070710 GGAATCGTCTTAGGCCTAATTCCTAT 60.071 42.308 30.87 18.30 36.20 2.57
202 203 5.245526 GGAATCGTCTTAGGCCTAATTCCTA 59.754 44.000 30.87 17.23 35.21 2.94
203 204 4.040584 GGAATCGTCTTAGGCCTAATTCCT 59.959 45.833 30.87 15.56 37.72 3.36
204 205 4.202326 TGGAATCGTCTTAGGCCTAATTCC 60.202 45.833 31.20 31.20 33.26 3.01
205 206 4.957296 TGGAATCGTCTTAGGCCTAATTC 58.043 43.478 25.37 22.52 0.00 2.17
206 207 5.367945 TTGGAATCGTCTTAGGCCTAATT 57.632 39.130 25.37 16.06 0.00 1.40
207 208 5.367945 TTTGGAATCGTCTTAGGCCTAAT 57.632 39.130 25.37 9.75 0.00 1.73
208 209 4.829872 TTTGGAATCGTCTTAGGCCTAA 57.170 40.909 23.79 23.79 0.00 2.69
209 210 5.836898 TCTATTTGGAATCGTCTTAGGCCTA 59.163 40.000 8.91 8.91 0.00 3.93
210 211 3.933861 ATTTGGAATCGTCTTAGGCCT 57.066 42.857 11.78 11.78 0.00 5.19
211 212 4.957296 TCTATTTGGAATCGTCTTAGGCC 58.043 43.478 0.00 0.00 0.00 5.19
212 213 6.920569 TTTCTATTTGGAATCGTCTTAGGC 57.079 37.500 0.00 0.00 0.00 3.93
213 214 8.947115 AGTTTTTCTATTTGGAATCGTCTTAGG 58.053 33.333 0.00 0.00 0.00 2.69
216 217 8.846211 TGAAGTTTTTCTATTTGGAATCGTCTT 58.154 29.630 0.00 0.00 34.31 3.01
217 218 8.391075 TGAAGTTTTTCTATTTGGAATCGTCT 57.609 30.769 0.00 0.00 34.31 4.18
218 219 9.626045 ATTGAAGTTTTTCTATTTGGAATCGTC 57.374 29.630 0.00 0.00 34.31 4.20
219 220 9.626045 GATTGAAGTTTTTCTATTTGGAATCGT 57.374 29.630 0.00 0.00 34.31 3.73
220 221 9.624697 TGATTGAAGTTTTTCTATTTGGAATCG 57.375 29.630 0.00 0.00 34.31 3.34
231 232 9.533253 ACAAATCGAAATGATTGAAGTTTTTCT 57.467 25.926 7.70 0.00 46.65 2.52
270 271 7.909485 TTAGGGATAGATCGTACCTCTTTTT 57.091 36.000 8.07 0.00 32.87 1.94
271 272 7.909485 TTTAGGGATAGATCGTACCTCTTTT 57.091 36.000 8.07 0.00 32.87 2.27
272 273 9.245481 CTATTTAGGGATAGATCGTACCTCTTT 57.755 37.037 8.07 0.00 32.48 2.52
273 274 8.392479 ACTATTTAGGGATAGATCGTACCTCTT 58.608 37.037 8.07 0.00 34.44 2.85
274 275 7.931046 ACTATTTAGGGATAGATCGTACCTCT 58.069 38.462 8.07 5.27 34.44 3.69
275 276 9.108284 GTACTATTTAGGGATAGATCGTACCTC 57.892 40.741 8.07 0.00 34.44 3.85
276 277 8.834733 AGTACTATTTAGGGATAGATCGTACCT 58.165 37.037 9.53 9.53 34.44 3.08
277 278 9.108284 GAGTACTATTTAGGGATAGATCGTACC 57.892 40.741 0.00 0.00 34.44 3.34
278 279 9.889128 AGAGTACTATTTAGGGATAGATCGTAC 57.111 37.037 0.00 0.00 34.44 3.67
297 298 9.132923 TGAGATTCGTGGATAATTTAGAGTACT 57.867 33.333 0.00 0.00 0.00 2.73
298 299 9.745880 TTGAGATTCGTGGATAATTTAGAGTAC 57.254 33.333 0.00 0.00 0.00 2.73
300 301 9.265901 CATTGAGATTCGTGGATAATTTAGAGT 57.734 33.333 0.00 0.00 0.00 3.24
301 302 9.481340 TCATTGAGATTCGTGGATAATTTAGAG 57.519 33.333 0.00 0.00 0.00 2.43
302 303 9.261180 GTCATTGAGATTCGTGGATAATTTAGA 57.739 33.333 0.00 0.00 0.00 2.10
303 304 8.499162 GGTCATTGAGATTCGTGGATAATTTAG 58.501 37.037 0.00 0.00 0.00 1.85
304 305 7.990314 TGGTCATTGAGATTCGTGGATAATTTA 59.010 33.333 0.00 0.00 0.00 1.40
305 306 6.828273 TGGTCATTGAGATTCGTGGATAATTT 59.172 34.615 0.00 0.00 0.00 1.82
306 307 6.356556 TGGTCATTGAGATTCGTGGATAATT 58.643 36.000 0.00 0.00 0.00 1.40
307 308 5.928976 TGGTCATTGAGATTCGTGGATAAT 58.071 37.500 0.00 0.00 0.00 1.28
308 309 5.351948 TGGTCATTGAGATTCGTGGATAA 57.648 39.130 0.00 0.00 0.00 1.75
309 310 5.128663 TCTTGGTCATTGAGATTCGTGGATA 59.871 40.000 0.00 0.00 0.00 2.59
310 311 3.912496 TGGTCATTGAGATTCGTGGAT 57.088 42.857 0.00 0.00 0.00 3.41
311 312 3.260632 TCTTGGTCATTGAGATTCGTGGA 59.739 43.478 0.00 0.00 0.00 4.02
312 313 3.599343 TCTTGGTCATTGAGATTCGTGG 58.401 45.455 0.00 0.00 0.00 4.94
313 314 5.611796 TTTCTTGGTCATTGAGATTCGTG 57.388 39.130 0.00 0.00 0.00 4.35
314 315 5.997746 TCTTTTCTTGGTCATTGAGATTCGT 59.002 36.000 0.00 0.00 0.00 3.85
315 316 6.486253 TCTTTTCTTGGTCATTGAGATTCG 57.514 37.500 0.00 0.00 0.00 3.34
316 317 9.351570 GAATTCTTTTCTTGGTCATTGAGATTC 57.648 33.333 0.00 0.00 0.00 2.52
317 318 8.309656 GGAATTCTTTTCTTGGTCATTGAGATT 58.690 33.333 5.23 0.00 0.00 2.40
318 319 7.673082 AGGAATTCTTTTCTTGGTCATTGAGAT 59.327 33.333 5.23 0.00 0.00 2.75
319 320 7.006509 AGGAATTCTTTTCTTGGTCATTGAGA 58.993 34.615 5.23 0.00 0.00 3.27
320 321 7.224522 AGGAATTCTTTTCTTGGTCATTGAG 57.775 36.000 5.23 0.00 0.00 3.02
321 322 8.704849 TTAGGAATTCTTTTCTTGGTCATTGA 57.295 30.769 5.23 0.00 0.00 2.57
322 323 9.933723 AATTAGGAATTCTTTTCTTGGTCATTG 57.066 29.630 5.23 0.00 0.00 2.82
325 326 9.807921 ACTAATTAGGAATTCTTTTCTTGGTCA 57.192 29.630 16.73 0.00 32.38 4.02
336 337 9.898152 CTCTTTTCCAGACTAATTAGGAATTCT 57.102 33.333 16.73 7.38 39.67 2.40
337 338 9.674068 ACTCTTTTCCAGACTAATTAGGAATTC 57.326 33.333 16.73 5.22 39.67 2.17
338 339 9.674068 GACTCTTTTCCAGACTAATTAGGAATT 57.326 33.333 16.73 0.00 39.67 2.17
339 340 7.982354 CGACTCTTTTCCAGACTAATTAGGAAT 59.018 37.037 16.73 0.00 39.67 3.01
340 341 7.039223 ACGACTCTTTTCCAGACTAATTAGGAA 60.039 37.037 16.73 8.40 38.31 3.36
341 342 6.436532 ACGACTCTTTTCCAGACTAATTAGGA 59.563 38.462 16.73 2.39 0.00 2.94
342 343 6.631962 ACGACTCTTTTCCAGACTAATTAGG 58.368 40.000 16.73 0.00 0.00 2.69
343 344 8.675504 TCTACGACTCTTTTCCAGACTAATTAG 58.324 37.037 11.05 11.05 0.00 1.73
344 345 8.571461 TCTACGACTCTTTTCCAGACTAATTA 57.429 34.615 0.00 0.00 0.00 1.40
345 346 7.463961 TCTACGACTCTTTTCCAGACTAATT 57.536 36.000 0.00 0.00 0.00 1.40
346 347 7.463961 TTCTACGACTCTTTTCCAGACTAAT 57.536 36.000 0.00 0.00 0.00 1.73
347 348 6.889301 TTCTACGACTCTTTTCCAGACTAA 57.111 37.500 0.00 0.00 0.00 2.24
348 349 6.625300 GCATTCTACGACTCTTTTCCAGACTA 60.625 42.308 0.00 0.00 0.00 2.59
349 350 5.715070 CATTCTACGACTCTTTTCCAGACT 58.285 41.667 0.00 0.00 0.00 3.24
350 351 4.327627 GCATTCTACGACTCTTTTCCAGAC 59.672 45.833 0.00 0.00 0.00 3.51
351 352 4.495422 GCATTCTACGACTCTTTTCCAGA 58.505 43.478 0.00 0.00 0.00 3.86
352 353 3.619038 GGCATTCTACGACTCTTTTCCAG 59.381 47.826 0.00 0.00 0.00 3.86
353 354 3.007506 TGGCATTCTACGACTCTTTTCCA 59.992 43.478 0.00 0.00 0.00 3.53
354 355 3.596214 TGGCATTCTACGACTCTTTTCC 58.404 45.455 0.00 0.00 0.00 3.13
355 356 3.619038 CCTGGCATTCTACGACTCTTTTC 59.381 47.826 0.00 0.00 0.00 2.29
356 357 3.260884 TCCTGGCATTCTACGACTCTTTT 59.739 43.478 0.00 0.00 0.00 2.27
357 358 2.832129 TCCTGGCATTCTACGACTCTTT 59.168 45.455 0.00 0.00 0.00 2.52
358 359 2.457598 TCCTGGCATTCTACGACTCTT 58.542 47.619 0.00 0.00 0.00 2.85
359 360 2.145397 TCCTGGCATTCTACGACTCT 57.855 50.000 0.00 0.00 0.00 3.24
360 361 2.961526 TTCCTGGCATTCTACGACTC 57.038 50.000 0.00 0.00 0.00 3.36
361 362 2.103263 GGATTCCTGGCATTCTACGACT 59.897 50.000 0.00 0.00 0.00 4.18
362 363 2.484889 GGATTCCTGGCATTCTACGAC 58.515 52.381 0.00 0.00 0.00 4.34
363 364 1.416401 GGGATTCCTGGCATTCTACGA 59.584 52.381 2.01 0.00 0.00 3.43
364 365 1.140852 TGGGATTCCTGGCATTCTACG 59.859 52.381 2.01 0.00 0.00 3.51
365 366 3.297134 TTGGGATTCCTGGCATTCTAC 57.703 47.619 2.01 0.00 0.00 2.59
366 367 3.527253 TCTTTGGGATTCCTGGCATTCTA 59.473 43.478 2.01 0.00 0.00 2.10
367 368 2.312741 TCTTTGGGATTCCTGGCATTCT 59.687 45.455 2.01 0.00 0.00 2.40
368 369 2.738743 TCTTTGGGATTCCTGGCATTC 58.261 47.619 2.01 0.00 0.00 2.67
369 370 2.925966 TCTTTGGGATTCCTGGCATT 57.074 45.000 2.01 0.00 0.00 3.56
370 371 2.925966 TTCTTTGGGATTCCTGGCAT 57.074 45.000 2.01 0.00 0.00 4.40
371 372 2.109834 TCTTTCTTTGGGATTCCTGGCA 59.890 45.455 2.01 0.00 0.00 4.92
372 373 2.807676 TCTTTCTTTGGGATTCCTGGC 58.192 47.619 2.01 0.00 0.00 4.85
373 374 6.364568 AAAATCTTTCTTTGGGATTCCTGG 57.635 37.500 2.01 0.00 0.00 4.45
374 375 7.895975 GAAAAATCTTTCTTTGGGATTCCTG 57.104 36.000 2.01 0.00 38.35 3.86
412 413 9.520204 CGCCTTATTTGAATTGACTGAATAATT 57.480 29.630 0.00 0.00 0.00 1.40
413 414 8.686334 ACGCCTTATTTGAATTGACTGAATAAT 58.314 29.630 0.00 0.00 0.00 1.28
414 415 8.050778 ACGCCTTATTTGAATTGACTGAATAA 57.949 30.769 0.00 0.00 0.00 1.40
415 416 7.624360 ACGCCTTATTTGAATTGACTGAATA 57.376 32.000 0.00 0.00 0.00 1.75
416 417 6.515272 ACGCCTTATTTGAATTGACTGAAT 57.485 33.333 0.00 0.00 0.00 2.57
417 418 5.957842 ACGCCTTATTTGAATTGACTGAA 57.042 34.783 0.00 0.00 0.00 3.02
418 419 7.047891 AGATACGCCTTATTTGAATTGACTGA 58.952 34.615 0.00 0.00 0.00 3.41
419 420 7.251704 AGATACGCCTTATTTGAATTGACTG 57.748 36.000 0.00 0.00 0.00 3.51
420 421 7.336931 ACAAGATACGCCTTATTTGAATTGACT 59.663 33.333 0.00 0.00 0.00 3.41
421 422 7.472543 ACAAGATACGCCTTATTTGAATTGAC 58.527 34.615 0.00 0.00 0.00 3.18
422 423 7.624360 ACAAGATACGCCTTATTTGAATTGA 57.376 32.000 0.00 0.00 0.00 2.57
423 424 7.967854 TGAACAAGATACGCCTTATTTGAATTG 59.032 33.333 0.00 0.00 0.00 2.32
424 425 8.050778 TGAACAAGATACGCCTTATTTGAATT 57.949 30.769 0.00 0.00 0.00 2.17
425 426 7.624360 TGAACAAGATACGCCTTATTTGAAT 57.376 32.000 0.00 0.00 0.00 2.57
426 427 7.441890 TTGAACAAGATACGCCTTATTTGAA 57.558 32.000 0.00 0.00 0.00 2.69
427 428 6.403200 GCTTGAACAAGATACGCCTTATTTGA 60.403 38.462 17.19 0.00 40.79 2.69
428 429 5.739161 GCTTGAACAAGATACGCCTTATTTG 59.261 40.000 17.19 0.00 40.79 2.32
429 430 5.163652 GGCTTGAACAAGATACGCCTTATTT 60.164 40.000 17.19 0.00 40.79 1.40
430 431 4.335594 GGCTTGAACAAGATACGCCTTATT 59.664 41.667 17.19 0.00 40.79 1.40
431 432 3.877508 GGCTTGAACAAGATACGCCTTAT 59.122 43.478 17.19 0.00 40.79 1.73
432 433 3.267483 GGCTTGAACAAGATACGCCTTA 58.733 45.455 17.19 0.00 40.79 2.69
433 434 2.084546 GGCTTGAACAAGATACGCCTT 58.915 47.619 17.19 0.00 40.79 4.35
434 435 1.003118 TGGCTTGAACAAGATACGCCT 59.997 47.619 17.19 0.00 40.79 5.52
435 436 1.448985 TGGCTTGAACAAGATACGCC 58.551 50.000 17.19 11.94 40.79 5.68
436 437 3.764885 ATTGGCTTGAACAAGATACGC 57.235 42.857 17.19 3.43 40.79 4.42
437 438 8.826710 TCTATTTATTGGCTTGAACAAGATACG 58.173 33.333 17.19 0.00 40.79 3.06
439 440 8.840321 GCTCTATTTATTGGCTTGAACAAGATA 58.160 33.333 17.19 4.94 40.79 1.98
440 441 7.559170 AGCTCTATTTATTGGCTTGAACAAGAT 59.441 33.333 17.19 5.79 40.79 2.40
441 442 6.886459 AGCTCTATTTATTGGCTTGAACAAGA 59.114 34.615 17.19 0.00 40.79 3.02
442 443 6.971184 CAGCTCTATTTATTGGCTTGAACAAG 59.029 38.462 9.82 9.82 41.24 3.16
443 444 6.127647 CCAGCTCTATTTATTGGCTTGAACAA 60.128 38.462 0.00 0.00 0.00 2.83
444 445 5.357878 CCAGCTCTATTTATTGGCTTGAACA 59.642 40.000 0.00 0.00 0.00 3.18
445 446 5.221126 CCCAGCTCTATTTATTGGCTTGAAC 60.221 44.000 0.00 0.00 0.00 3.18
446 447 4.889409 CCCAGCTCTATTTATTGGCTTGAA 59.111 41.667 0.00 0.00 0.00 2.69
447 448 4.464008 CCCAGCTCTATTTATTGGCTTGA 58.536 43.478 0.00 0.00 0.00 3.02
448 449 3.571401 CCCCAGCTCTATTTATTGGCTTG 59.429 47.826 0.00 0.00 0.00 4.01
449 450 3.205282 ACCCCAGCTCTATTTATTGGCTT 59.795 43.478 0.00 0.00 0.00 4.35
450 451 2.785857 ACCCCAGCTCTATTTATTGGCT 59.214 45.455 0.00 0.00 0.00 4.75
451 452 3.229697 ACCCCAGCTCTATTTATTGGC 57.770 47.619 0.00 0.00 0.00 4.52
452 453 6.187727 TCTAACCCCAGCTCTATTTATTGG 57.812 41.667 0.00 0.00 0.00 3.16
453 454 7.453393 TCATCTAACCCCAGCTCTATTTATTG 58.547 38.462 0.00 0.00 0.00 1.90
454 455 7.633018 TCATCTAACCCCAGCTCTATTTATT 57.367 36.000 0.00 0.00 0.00 1.40
455 456 7.682028 AGATCATCTAACCCCAGCTCTATTTAT 59.318 37.037 0.00 0.00 0.00 1.40
456 457 7.019388 AGATCATCTAACCCCAGCTCTATTTA 58.981 38.462 0.00 0.00 0.00 1.40
457 458 5.848921 AGATCATCTAACCCCAGCTCTATTT 59.151 40.000 0.00 0.00 0.00 1.40
458 459 5.410602 AGATCATCTAACCCCAGCTCTATT 58.589 41.667 0.00 0.00 0.00 1.73
459 460 5.022227 AGATCATCTAACCCCAGCTCTAT 57.978 43.478 0.00 0.00 0.00 1.98
460 461 4.477536 AGATCATCTAACCCCAGCTCTA 57.522 45.455 0.00 0.00 0.00 2.43
461 462 3.342926 AGATCATCTAACCCCAGCTCT 57.657 47.619 0.00 0.00 0.00 4.09
462 463 4.156477 ACTAGATCATCTAACCCCAGCTC 58.844 47.826 0.00 0.00 0.00 4.09
463 464 4.206244 ACTAGATCATCTAACCCCAGCT 57.794 45.455 0.00 0.00 0.00 4.24
464 465 4.591072 AGAACTAGATCATCTAACCCCAGC 59.409 45.833 0.00 0.00 0.00 4.85
465 466 6.739331 AAGAACTAGATCATCTAACCCCAG 57.261 41.667 0.00 0.00 0.00 4.45
882 891 8.437274 TTCCTAATTAGTCTGGAAAAGAGTCT 57.563 34.615 11.50 0.00 39.43 3.24
1337 1347 7.579726 ACGTACGTGAGATACATTAGGAATAC 58.420 38.462 22.14 0.00 0.00 1.89
1863 4276 1.283321 AGGATCTTGGCTTGACCTTCC 59.717 52.381 0.00 0.00 40.22 3.46
1864 4277 2.797177 AGGATCTTGGCTTGACCTTC 57.203 50.000 0.00 0.00 40.22 3.46
1865 4278 2.291217 GGAAGGATCTTGGCTTGACCTT 60.291 50.000 0.00 0.00 39.89 3.50
1866 4279 1.283321 GGAAGGATCTTGGCTTGACCT 59.717 52.381 0.00 0.00 40.22 3.85
1867 4280 1.004745 TGGAAGGATCTTGGCTTGACC 59.995 52.381 0.00 0.00 39.84 4.02
1868 4281 2.496899 TGGAAGGATCTTGGCTTGAC 57.503 50.000 0.00 0.00 0.00 3.18
1878 4291 1.946745 CTCGCCTTCTTGGAAGGATC 58.053 55.000 25.05 10.86 39.81 3.36
1880 4293 1.194781 AGCTCGCCTTCTTGGAAGGA 61.195 55.000 25.05 8.53 39.81 3.36
1881 4294 0.322008 AAGCTCGCCTTCTTGGAAGG 60.322 55.000 18.76 18.76 40.39 3.46
1882 4295 0.801251 CAAGCTCGCCTTCTTGGAAG 59.199 55.000 0.00 0.76 36.83 3.46
1883 4296 0.108585 ACAAGCTCGCCTTCTTGGAA 59.891 50.000 10.10 0.00 42.82 3.53
1884 4297 0.603707 CACAAGCTCGCCTTCTTGGA 60.604 55.000 10.10 0.00 42.82 3.53
1885 4298 1.871772 CACAAGCTCGCCTTCTTGG 59.128 57.895 10.10 0.00 42.82 3.61
1886 4299 1.208614 GCACAAGCTCGCCTTCTTG 59.791 57.895 0.00 0.00 43.79 3.02
1887 4300 3.660621 GCACAAGCTCGCCTTCTT 58.339 55.556 0.00 0.00 37.91 2.52
1899 4312 4.892965 AACAGCCGGCCAGCACAA 62.893 61.111 26.15 0.00 34.23 3.33
1919 4332 2.202987 GTGCTCCGGCTGATCCAG 60.203 66.667 0.00 0.00 39.59 3.86
1920 4333 2.526450 CTTGTGCTCCGGCTGATCCA 62.526 60.000 0.00 0.00 39.59 3.41
1921 4334 1.817099 CTTGTGCTCCGGCTGATCC 60.817 63.158 0.00 0.00 39.59 3.36
1922 4335 0.179062 ATCTTGTGCTCCGGCTGATC 60.179 55.000 0.00 0.00 39.59 2.92
1923 4336 0.179062 GATCTTGTGCTCCGGCTGAT 60.179 55.000 0.00 0.00 39.59 2.90
1924 4337 1.219124 GATCTTGTGCTCCGGCTGA 59.781 57.895 0.00 0.00 39.59 4.26
1925 4338 2.169789 CGATCTTGTGCTCCGGCTG 61.170 63.158 0.00 0.00 39.59 4.85
1926 4339 2.185350 CGATCTTGTGCTCCGGCT 59.815 61.111 0.00 0.00 39.59 5.52
1927 4340 3.567797 GCGATCTTGTGCTCCGGC 61.568 66.667 0.00 0.00 39.26 6.13
1928 4341 2.859273 AAGGCGATCTTGTGCTCCGG 62.859 60.000 0.00 0.00 33.76 5.14
1929 4342 1.424493 GAAGGCGATCTTGTGCTCCG 61.424 60.000 0.00 0.00 35.50 4.63
1930 4343 0.107945 AGAAGGCGATCTTGTGCTCC 60.108 55.000 0.00 0.00 35.50 4.70
1931 4344 1.731720 AAGAAGGCGATCTTGTGCTC 58.268 50.000 7.63 0.00 38.22 4.26
1932 4345 3.944476 AAGAAGGCGATCTTGTGCT 57.056 47.368 7.63 0.00 38.22 4.40
1937 4350 1.909302 TCCTTCCAAGAAGGCGATCTT 59.091 47.619 16.95 3.20 40.23 2.40
1938 4351 1.573108 TCCTTCCAAGAAGGCGATCT 58.427 50.000 16.95 0.00 37.34 2.75
1939 4352 2.103941 AGATCCTTCCAAGAAGGCGATC 59.896 50.000 16.95 14.94 37.34 3.69
1940 4353 2.122768 AGATCCTTCCAAGAAGGCGAT 58.877 47.619 16.95 7.70 37.34 4.58
1941 4354 1.573108 AGATCCTTCCAAGAAGGCGA 58.427 50.000 16.95 3.24 37.34 5.54
1942 4355 2.012673 CAAGATCCTTCCAAGAAGGCG 58.987 52.381 16.95 0.00 37.34 5.52
1943 4356 2.373224 CCAAGATCCTTCCAAGAAGGC 58.627 52.381 16.95 5.84 37.34 4.35
1944 4357 2.025510 AGCCAAGATCCTTCCAAGAAGG 60.026 50.000 15.85 15.85 38.78 3.46
1945 4358 3.362870 AGCCAAGATCCTTCCAAGAAG 57.637 47.619 0.00 0.00 0.00 2.85
1946 4359 3.074390 TCAAGCCAAGATCCTTCCAAGAA 59.926 43.478 0.00 0.00 0.00 2.52
1947 4360 2.644299 TCAAGCCAAGATCCTTCCAAGA 59.356 45.455 0.00 0.00 0.00 3.02
1948 4361 2.751806 GTCAAGCCAAGATCCTTCCAAG 59.248 50.000 0.00 0.00 0.00 3.61
1949 4362 2.555227 GGTCAAGCCAAGATCCTTCCAA 60.555 50.000 0.00 0.00 37.17 3.53
1950 4363 1.004745 GGTCAAGCCAAGATCCTTCCA 59.995 52.381 0.00 0.00 37.17 3.53
1951 4364 1.283321 AGGTCAAGCCAAGATCCTTCC 59.717 52.381 0.00 0.00 40.61 3.46
1952 4365 2.797177 AGGTCAAGCCAAGATCCTTC 57.203 50.000 0.00 0.00 40.61 3.46
1953 4366 2.291217 GGAAGGTCAAGCCAAGATCCTT 60.291 50.000 0.00 0.00 40.61 3.36
1954 4367 1.283321 GGAAGGTCAAGCCAAGATCCT 59.717 52.381 0.00 0.00 40.61 3.24
1955 4368 1.756430 GGAAGGTCAAGCCAAGATCC 58.244 55.000 0.00 0.00 40.61 3.36
1956 4369 1.373570 CGGAAGGTCAAGCCAAGATC 58.626 55.000 0.00 0.00 40.61 2.75
1957 4370 3.558674 CGGAAGGTCAAGCCAAGAT 57.441 52.632 0.00 0.00 40.61 2.40
1970 4383 0.808755 GCCATTACCACAACCGGAAG 59.191 55.000 9.46 1.51 0.00 3.46
1971 4384 0.956410 CGCCATTACCACAACCGGAA 60.956 55.000 9.46 0.00 0.00 4.30
1972 4385 1.376166 CGCCATTACCACAACCGGA 60.376 57.895 9.46 0.00 0.00 5.14
1973 4386 0.391395 TACGCCATTACCACAACCGG 60.391 55.000 0.00 0.00 0.00 5.28
1974 4387 1.440708 TTACGCCATTACCACAACCG 58.559 50.000 0.00 0.00 0.00 4.44
1975 4388 2.095110 GGTTTACGCCATTACCACAACC 60.095 50.000 0.00 0.00 0.00 3.77
1976 4389 2.095110 GGGTTTACGCCATTACCACAAC 60.095 50.000 0.00 0.00 32.20 3.32
1977 4390 2.161030 GGGTTTACGCCATTACCACAA 58.839 47.619 0.00 0.00 32.20 3.33
1978 4391 1.351683 AGGGTTTACGCCATTACCACA 59.648 47.619 0.00 0.00 32.20 4.17
1979 4392 1.741145 CAGGGTTTACGCCATTACCAC 59.259 52.381 0.00 0.00 32.20 4.16
1980 4393 1.951424 GCAGGGTTTACGCCATTACCA 60.951 52.381 0.00 0.00 32.20 3.25
1981 4394 0.736636 GCAGGGTTTACGCCATTACC 59.263 55.000 0.00 0.00 0.00 2.85
1982 4395 1.400494 CAGCAGGGTTTACGCCATTAC 59.600 52.381 0.00 0.00 0.00 1.89
1983 4396 1.680555 CCAGCAGGGTTTACGCCATTA 60.681 52.381 0.00 0.00 0.00 1.90
1984 4397 0.965363 CCAGCAGGGTTTACGCCATT 60.965 55.000 0.00 0.00 0.00 3.16
1985 4398 1.378514 CCAGCAGGGTTTACGCCAT 60.379 57.895 0.00 0.00 0.00 4.40
1986 4399 2.033448 CCAGCAGGGTTTACGCCA 59.967 61.111 0.00 0.00 0.00 5.69
1995 4408 2.109799 CGCCATCTACCAGCAGGG 59.890 66.667 0.00 0.00 44.81 4.45
1996 4409 2.109799 CCGCCATCTACCAGCAGG 59.890 66.667 0.00 0.00 42.21 4.85
1997 4410 1.227380 GTCCGCCATCTACCAGCAG 60.227 63.158 0.00 0.00 0.00 4.24
1998 4411 2.731571 GGTCCGCCATCTACCAGCA 61.732 63.158 0.00 0.00 33.28 4.41
1999 4412 2.109181 GGTCCGCCATCTACCAGC 59.891 66.667 0.00 0.00 33.28 4.85
2000 4413 2.417516 CGGTCCGCCATCTACCAG 59.582 66.667 0.00 0.00 32.55 4.00
2001 4414 3.151710 CCGGTCCGCCATCTACCA 61.152 66.667 5.50 0.00 32.55 3.25
2002 4415 4.603946 GCCGGTCCGCCATCTACC 62.604 72.222 5.50 0.00 34.09 3.18
2003 4416 3.537874 AGCCGGTCCGCCATCTAC 61.538 66.667 5.50 0.00 34.09 2.59
2004 4417 3.536917 CAGCCGGTCCGCCATCTA 61.537 66.667 5.50 0.00 34.09 1.98
2006 4419 4.899239 CTCAGCCGGTCCGCCATC 62.899 72.222 5.50 0.00 34.09 3.51
2019 4432 2.103042 GCCGGCTGTTAGCACTCAG 61.103 63.158 22.15 0.00 44.75 3.35
2020 4433 2.047274 GCCGGCTGTTAGCACTCA 60.047 61.111 22.15 0.00 44.75 3.41
2021 4434 2.820037 GGCCGGCTGTTAGCACTC 60.820 66.667 28.56 0.41 44.75 3.51
2022 4435 4.410400 GGGCCGGCTGTTAGCACT 62.410 66.667 28.56 0.00 44.75 4.40
2023 4436 4.410400 AGGGCCGGCTGTTAGCAC 62.410 66.667 28.56 6.44 44.75 4.40
2024 4437 4.096003 GAGGGCCGGCTGTTAGCA 62.096 66.667 28.56 0.00 44.75 3.49
2025 4438 3.330992 AAGAGGGCCGGCTGTTAGC 62.331 63.158 28.56 8.16 41.46 3.09
2026 4439 1.153349 GAAGAGGGCCGGCTGTTAG 60.153 63.158 28.56 0.00 0.00 2.34
2027 4440 2.666098 GGAAGAGGGCCGGCTGTTA 61.666 63.158 28.56 0.00 0.00 2.41
2028 4441 4.035102 GGAAGAGGGCCGGCTGTT 62.035 66.667 28.56 12.65 0.00 3.16
2030 4443 4.479993 CTGGAAGAGGGCCGGCTG 62.480 72.222 28.56 1.70 34.07 4.85
2033 4446 4.479993 CTGCTGGAAGAGGGCCGG 62.480 72.222 0.00 0.00 34.07 6.13
2034 4447 4.479993 CCTGCTGGAAGAGGGCCG 62.480 72.222 2.92 0.00 34.07 6.13
2035 4448 3.334054 ACCTGCTGGAAGAGGGCC 61.334 66.667 17.64 0.00 36.12 5.80
2036 4449 2.270527 GACCTGCTGGAAGAGGGC 59.729 66.667 17.64 0.00 36.12 5.19
2037 4450 1.984570 TCGACCTGCTGGAAGAGGG 60.985 63.158 17.64 0.00 36.12 4.30
2038 4451 1.216710 GTCGACCTGCTGGAAGAGG 59.783 63.158 17.64 0.00 37.31 3.69
2039 4452 0.389166 GTGTCGACCTGCTGGAAGAG 60.389 60.000 17.64 4.55 34.07 2.85
2040 4453 1.666011 GTGTCGACCTGCTGGAAGA 59.334 57.895 17.64 11.66 34.07 2.87
2041 4454 1.374758 GGTGTCGACCTGCTGGAAG 60.375 63.158 17.64 9.47 39.47 3.46
2042 4455 2.741092 GGTGTCGACCTGCTGGAA 59.259 61.111 17.64 0.00 39.47 3.53
2043 4456 3.680786 CGGTGTCGACCTGCTGGA 61.681 66.667 17.64 0.00 40.58 3.86
2044 4457 3.916392 GACGGTGTCGACCTGCTGG 62.916 68.421 14.12 8.29 40.58 4.85
2045 4458 2.421877 AAGACGGTGTCGACCTGCTG 62.422 60.000 14.12 10.73 40.58 4.41
2046 4459 2.143594 GAAGACGGTGTCGACCTGCT 62.144 60.000 14.12 8.19 40.58 4.24
2047 4460 1.733399 GAAGACGGTGTCGACCTGC 60.733 63.158 14.12 3.15 40.58 4.85
2048 4461 0.109689 GAGAAGACGGTGTCGACCTG 60.110 60.000 14.12 11.82 40.58 4.00
2049 4462 0.536687 TGAGAAGACGGTGTCGACCT 60.537 55.000 14.12 0.00 40.58 3.85
2050 4463 0.386985 GTGAGAAGACGGTGTCGACC 60.387 60.000 14.12 4.20 37.67 4.79
2051 4464 0.725118 CGTGAGAAGACGGTGTCGAC 60.725 60.000 9.11 9.11 37.67 4.20
2052 4465 1.572941 CGTGAGAAGACGGTGTCGA 59.427 57.895 0.00 0.00 37.67 4.20
2053 4466 2.081212 GCGTGAGAAGACGGTGTCG 61.081 63.158 0.00 0.00 39.81 4.35
2054 4467 3.843985 GCGTGAGAAGACGGTGTC 58.156 61.111 0.00 0.00 39.81 3.67
2058 4471 0.038159 AAGGAAGCGTGAGAAGACGG 60.038 55.000 0.00 0.00 39.81 4.79
2059 4472 1.063806 CAAGGAAGCGTGAGAAGACG 58.936 55.000 0.00 0.00 42.42 4.18
2060 4473 1.433534 CCAAGGAAGCGTGAGAAGAC 58.566 55.000 0.00 0.00 0.00 3.01
2061 4474 0.320771 GCCAAGGAAGCGTGAGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
2062 4475 1.301677 GGCCAAGGAAGCGTGAGAAG 61.302 60.000 0.00 0.00 0.00 2.85
2063 4476 1.302511 GGCCAAGGAAGCGTGAGAA 60.303 57.895 0.00 0.00 0.00 2.87
2064 4477 2.172483 GAGGCCAAGGAAGCGTGAGA 62.172 60.000 5.01 0.00 0.00 3.27
2065 4478 1.743252 GAGGCCAAGGAAGCGTGAG 60.743 63.158 5.01 0.00 0.00 3.51
2066 4479 2.347490 GAGGCCAAGGAAGCGTGA 59.653 61.111 5.01 0.00 0.00 4.35
2067 4480 2.747855 GGAGGCCAAGGAAGCGTG 60.748 66.667 5.01 0.00 0.00 5.34
2068 4481 4.394712 CGGAGGCCAAGGAAGCGT 62.395 66.667 5.01 0.00 0.00 5.07
2080 4493 2.423898 ATGTACACGGAGGCGGAGG 61.424 63.158 0.00 0.00 0.00 4.30
2081 4494 1.226974 CATGTACACGGAGGCGGAG 60.227 63.158 0.00 0.00 0.00 4.63
2082 4495 2.717044 CCATGTACACGGAGGCGGA 61.717 63.158 0.40 0.00 0.00 5.54
2083 4496 2.202878 CCATGTACACGGAGGCGG 60.203 66.667 0.40 0.00 0.00 6.13
2084 4497 1.809619 CACCATGTACACGGAGGCG 60.810 63.158 16.26 0.00 0.00 5.52
2085 4498 0.739813 GTCACCATGTACACGGAGGC 60.740 60.000 16.26 4.26 0.00 4.70
2086 4499 0.108329 GGTCACCATGTACACGGAGG 60.108 60.000 16.26 9.30 0.00 4.30
2087 4500 0.108329 GGGTCACCATGTACACGGAG 60.108 60.000 16.26 7.07 36.50 4.63
2088 4501 1.879737 CGGGTCACCATGTACACGGA 61.880 60.000 16.26 0.00 38.83 4.69
2089 4502 1.447140 CGGGTCACCATGTACACGG 60.447 63.158 6.39 6.39 38.83 4.94
2090 4503 0.457853 CTCGGGTCACCATGTACACG 60.458 60.000 0.00 8.07 43.78 4.49
2091 4504 0.108329 CCTCGGGTCACCATGTACAC 60.108 60.000 0.00 0.00 36.13 2.90
2092 4505 1.895020 GCCTCGGGTCACCATGTACA 61.895 60.000 0.00 0.00 36.13 2.90
2093 4506 1.153429 GCCTCGGGTCACCATGTAC 60.153 63.158 0.00 0.00 36.13 2.90
2094 4507 2.717044 CGCCTCGGGTCACCATGTA 61.717 63.158 0.00 0.00 36.13 2.29
2095 4508 4.082523 CGCCTCGGGTCACCATGT 62.083 66.667 0.00 0.00 36.13 3.21
2096 4509 3.770040 TCGCCTCGGGTCACCATG 61.770 66.667 0.00 0.00 36.13 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.