Multiple sequence alignment - TraesCS5D01G542200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G542200 chr5D 100.000 4179 0 0 1 4179 552728006 552732184 0.000000e+00 7718.0
1 TraesCS5D01G542200 chr5D 85.135 1258 163 17 992 2232 552683716 552684966 0.000000e+00 1266.0
2 TraesCS5D01G542200 chr5D 86.789 545 61 11 2709 3246 552685324 552685864 7.730000e-167 597.0
3 TraesCS5D01G542200 chr5D 74.781 1142 224 41 1026 2137 552129694 552128587 4.930000e-124 455.0
4 TraesCS5D01G542200 chr5D 73.777 1186 260 37 992 2141 552407681 552408851 1.800000e-113 420.0
5 TraesCS5D01G542200 chr5D 86.517 267 26 7 2294 2553 552685063 552685326 6.840000e-73 285.0
6 TraesCS5D01G542200 chr5D 74.947 471 102 12 2706 3170 551544320 551543860 7.080000e-48 202.0
7 TraesCS5D01G542200 chr5D 75.000 372 75 16 2709 3073 552069157 552069517 5.590000e-34 156.0
8 TraesCS5D01G542200 chr5B 96.357 3157 100 9 47 3191 697833196 697830043 0.000000e+00 5179.0
9 TraesCS5D01G542200 chr5B 85.523 1271 152 21 995 2241 697869121 697867859 0.000000e+00 1299.0
10 TraesCS5D01G542200 chr5B 87.454 542 57 11 2712 3246 697867509 697866972 7.680000e-172 614.0
11 TraesCS5D01G542200 chr5B 76.451 1189 219 34 995 2148 703804903 703803741 4.650000e-164 588.0
12 TraesCS5D01G542200 chr5B 76.068 1170 247 26 995 2139 703859469 703858308 2.800000e-161 579.0
13 TraesCS5D01G542200 chr5B 95.410 305 14 0 3365 3669 697830046 697829742 1.750000e-133 486.0
14 TraesCS5D01G542200 chr5B 74.809 1175 240 38 995 2132 699731231 699730076 2.920000e-131 479.0
15 TraesCS5D01G542200 chr5B 74.293 1202 221 56 1008 2151 697819176 697820347 1.070000e-115 427.0
16 TraesCS5D01G542200 chr5B 87.385 325 40 1 3690 4014 660274365 660274688 5.100000e-99 372.0
17 TraesCS5D01G542200 chr5B 75.108 462 102 11 2713 3170 699790134 699789682 1.970000e-48 204.0
18 TraesCS5D01G542200 chr5B 82.791 215 33 4 1950 2161 703893842 703893629 5.520000e-44 189.0
19 TraesCS5D01G542200 chr5B 84.153 183 22 6 3997 4176 13745816 13745994 2.000000e-38 171.0
20 TraesCS5D01G542200 chr4A 87.157 2040 187 29 1274 3273 615375800 615373796 0.000000e+00 2246.0
21 TraesCS5D01G542200 chr4A 84.537 1274 168 18 991 2241 615457348 615456081 0.000000e+00 1234.0
22 TraesCS5D01G542200 chr4A 85.451 543 68 9 2712 3246 615455733 615455194 4.720000e-154 555.0
23 TraesCS5D01G542200 chr4A 74.756 1125 241 25 1039 2136 632615771 632616879 8.180000e-127 464.0
24 TraesCS5D01G542200 chr4A 86.685 368 36 6 911 1278 615376182 615375828 3.030000e-106 396.0
25 TraesCS5D01G542200 chr4A 88.785 321 26 4 3355 3666 615372802 615372483 6.550000e-103 385.0
26 TraesCS5D01G542200 chr4A 82.474 291 48 3 3721 4010 666270469 666270757 6.940000e-63 252.0
27 TraesCS5D01G542200 chr4A 85.714 175 19 6 3997 4168 605037968 605038139 3.320000e-41 180.0
28 TraesCS5D01G542200 chr4A 87.671 146 8 7 68 210 615429441 615429303 1.200000e-35 161.0
29 TraesCS5D01G542200 chr4A 91.667 48 2 2 868 914 615376333 615376287 9.700000e-07 65.8
30 TraesCS5D01G542200 chr4B 87.427 342 38 4 3669 4008 664557979 664558317 5.070000e-104 388.0
31 TraesCS5D01G542200 chr4B 82.317 328 53 4 3690 4015 596358763 596359087 3.180000e-71 279.0
32 TraesCS5D01G542200 chr7D 84.969 326 47 2 3690 4015 544568137 544568460 3.110000e-86 329.0
33 TraesCS5D01G542200 chr7D 77.672 524 85 22 2710 3212 535551210 535550698 1.470000e-74 291.0
34 TraesCS5D01G542200 chr7D 81.395 172 32 0 1021 1192 180985442 180985271 1.570000e-29 141.0
35 TraesCS5D01G542200 chr3B 87.454 271 34 0 3690 3960 794076449 794076179 3.140000e-81 313.0
36 TraesCS5D01G542200 chr3B 83.891 329 46 6 3690 4015 814883377 814883053 1.460000e-79 307.0
37 TraesCS5D01G542200 chr3D 85.135 296 41 3 3690 3983 593969883 593970177 2.440000e-77 300.0
38 TraesCS5D01G542200 chr7B 77.629 523 90 17 2710 3212 577282396 577281881 4.090000e-75 292.0
39 TraesCS5D01G542200 chr7B 85.714 175 19 6 3997 4168 606783721 606783550 3.320000e-41 180.0
40 TraesCS5D01G542200 chr7B 85.714 175 20 5 3997 4168 677447086 677447258 3.320000e-41 180.0
41 TraesCS5D01G542200 chr4D 83.819 309 45 3 3690 3996 507545759 507545454 5.290000e-74 289.0
42 TraesCS5D01G542200 chr2B 82.972 323 50 5 3690 4010 639530115 639530434 1.900000e-73 287.0
43 TraesCS5D01G542200 chr7A 76.908 524 92 16 2710 3212 618177508 618178023 1.910000e-68 270.0
44 TraesCS5D01G542200 chr7A 85.437 103 14 1 3705 3807 19822338 19822439 5.710000e-19 106.0
45 TraesCS5D01G542200 chr2A 81.703 317 51 6 3705 4018 36473565 36473877 1.490000e-64 257.0
46 TraesCS5D01G542200 chr2A 80.519 308 55 4 3705 4010 72565936 72565632 9.040000e-57 231.0
47 TraesCS5D01G542200 chr2A 81.897 116 15 5 3705 3817 102139952 102140064 4.450000e-15 93.5
48 TraesCS5D01G542200 chr1D 78.594 313 45 10 3705 4015 491640452 491640744 1.980000e-43 187.0
49 TraesCS5D01G542200 chr1D 85.714 175 18 7 3997 4168 460884595 460884765 1.190000e-40 178.0
50 TraesCS5D01G542200 chr6A 85.311 177 21 5 3997 4170 51443812 51443638 1.190000e-40 178.0
51 TraesCS5D01G542200 chr5A 85.227 176 21 5 3997 4169 708719260 708719433 4.290000e-40 176.0
52 TraesCS5D01G542200 chr1B 85.057 174 22 4 3997 4168 646449681 646449852 1.540000e-39 174.0
53 TraesCS5D01G542200 chr1B 84.530 181 21 7 3993 4168 169807630 169807808 5.550000e-39 172.0
54 TraesCS5D01G542200 chr1B 87.273 55 7 0 1454 1508 53088854 53088800 3.490000e-06 63.9
55 TraesCS5D01G542200 chr3A 77.636 313 47 13 3705 4015 86588150 86587859 7.190000e-38 169.0
56 TraesCS5D01G542200 chr6D 85.000 100 11 3 3705 3802 31868035 31868132 9.560000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G542200 chr5D 552728006 552732184 4178 False 7718.0 7718 100.0000 1 4179 1 chr5D.!!$F3 4178
1 TraesCS5D01G542200 chr5D 552683716 552685864 2148 False 716.0 1266 86.1470 992 3246 3 chr5D.!!$F4 2254
2 TraesCS5D01G542200 chr5D 552128587 552129694 1107 True 455.0 455 74.7810 1026 2137 1 chr5D.!!$R2 1111
3 TraesCS5D01G542200 chr5D 552407681 552408851 1170 False 420.0 420 73.7770 992 2141 1 chr5D.!!$F2 1149
4 TraesCS5D01G542200 chr5B 697829742 697833196 3454 True 2832.5 5179 95.8835 47 3669 2 chr5B.!!$R6 3622
5 TraesCS5D01G542200 chr5B 697866972 697869121 2149 True 956.5 1299 86.4885 995 3246 2 chr5B.!!$R7 2251
6 TraesCS5D01G542200 chr5B 703803741 703804903 1162 True 588.0 588 76.4510 995 2148 1 chr5B.!!$R3 1153
7 TraesCS5D01G542200 chr5B 703858308 703859469 1161 True 579.0 579 76.0680 995 2139 1 chr5B.!!$R4 1144
8 TraesCS5D01G542200 chr5B 699730076 699731231 1155 True 479.0 479 74.8090 995 2132 1 chr5B.!!$R1 1137
9 TraesCS5D01G542200 chr5B 697819176 697820347 1171 False 427.0 427 74.2930 1008 2151 1 chr5B.!!$F3 1143
10 TraesCS5D01G542200 chr4A 615455194 615457348 2154 True 894.5 1234 84.9940 991 3246 2 chr4A.!!$R3 2255
11 TraesCS5D01G542200 chr4A 615372483 615376333 3850 True 773.2 2246 88.5735 868 3666 4 chr4A.!!$R2 2798
12 TraesCS5D01G542200 chr4A 632615771 632616879 1108 False 464.0 464 74.7560 1039 2136 1 chr4A.!!$F2 1097
13 TraesCS5D01G542200 chr7D 535550698 535551210 512 True 291.0 291 77.6720 2710 3212 1 chr7D.!!$R2 502
14 TraesCS5D01G542200 chr7B 577281881 577282396 515 True 292.0 292 77.6290 2710 3212 1 chr7B.!!$R1 502
15 TraesCS5D01G542200 chr7A 618177508 618178023 515 False 270.0 270 76.9080 2710 3212 1 chr7A.!!$F2 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.322546 GGCATTTGAGAGGTCGGGTT 60.323 55.000 0.0 0.0 0.00 4.11 F
781 787 0.326264 CTCCTGGGGGAAAGTGACAG 59.674 60.000 0.0 0.0 41.69 3.51 F
2114 2400 1.561542 AGCTGGACCCTGTTTATCCTG 59.438 52.381 0.0 0.0 35.24 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1510 1.134848 GCTCAGGTGAGGAGATGACAC 60.135 57.143 9.03 0.00 42.29 3.67 R
2665 3037 1.750022 ACCAAGTTGGGGTAGGCTAA 58.250 50.000 25.59 0.00 43.37 3.09 R
3804 5136 0.167470 GGCTAAACCGACGGCTTTTC 59.833 55.000 15.39 3.35 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.436646 CGCGGGCATTTGAGAGGT 60.437 61.111 0.00 0.00 0.00 3.85
18 19 2.464459 CGCGGGCATTTGAGAGGTC 61.464 63.158 0.00 0.00 0.00 3.85
19 20 2.464459 GCGGGCATTTGAGAGGTCG 61.464 63.158 0.00 0.00 0.00 4.79
20 21 1.815421 CGGGCATTTGAGAGGTCGG 60.815 63.158 0.00 0.00 0.00 4.79
21 22 1.452108 GGGCATTTGAGAGGTCGGG 60.452 63.158 0.00 0.00 0.00 5.14
22 23 1.299976 GGCATTTGAGAGGTCGGGT 59.700 57.895 0.00 0.00 0.00 5.28
23 24 0.322546 GGCATTTGAGAGGTCGGGTT 60.323 55.000 0.00 0.00 0.00 4.11
24 25 1.534729 GCATTTGAGAGGTCGGGTTT 58.465 50.000 0.00 0.00 0.00 3.27
25 26 1.200020 GCATTTGAGAGGTCGGGTTTG 59.800 52.381 0.00 0.00 0.00 2.93
26 27 1.200020 CATTTGAGAGGTCGGGTTTGC 59.800 52.381 0.00 0.00 0.00 3.68
27 28 0.472471 TTTGAGAGGTCGGGTTTGCT 59.528 50.000 0.00 0.00 0.00 3.91
28 29 1.344065 TTGAGAGGTCGGGTTTGCTA 58.656 50.000 0.00 0.00 0.00 3.49
29 30 1.568504 TGAGAGGTCGGGTTTGCTAT 58.431 50.000 0.00 0.00 0.00 2.97
30 31 1.480954 TGAGAGGTCGGGTTTGCTATC 59.519 52.381 0.00 0.00 0.00 2.08
31 32 0.831307 AGAGGTCGGGTTTGCTATCC 59.169 55.000 0.00 0.00 0.00 2.59
32 33 0.529992 GAGGTCGGGTTTGCTATCCG 60.530 60.000 4.92 4.92 44.59 4.18
33 34 1.219935 GGTCGGGTTTGCTATCCGT 59.780 57.895 10.25 0.00 43.75 4.69
34 35 1.087771 GGTCGGGTTTGCTATCCGTG 61.088 60.000 10.25 0.00 43.75 4.94
35 36 1.087771 GTCGGGTTTGCTATCCGTGG 61.088 60.000 10.25 0.00 43.75 4.94
36 37 2.469516 CGGGTTTGCTATCCGTGGC 61.470 63.158 3.31 0.00 39.04 5.01
37 38 1.077716 GGGTTTGCTATCCGTGGCT 60.078 57.895 0.00 0.00 32.28 4.75
38 39 1.376609 GGGTTTGCTATCCGTGGCTG 61.377 60.000 0.00 0.00 32.28 4.85
39 40 0.676782 GGTTTGCTATCCGTGGCTGT 60.677 55.000 0.00 0.00 32.28 4.40
40 41 1.406341 GGTTTGCTATCCGTGGCTGTA 60.406 52.381 0.00 0.00 32.28 2.74
41 42 1.933853 GTTTGCTATCCGTGGCTGTAG 59.066 52.381 0.00 0.00 32.28 2.74
42 43 1.480789 TTGCTATCCGTGGCTGTAGA 58.519 50.000 0.00 0.00 32.28 2.59
43 44 0.744874 TGCTATCCGTGGCTGTAGAC 59.255 55.000 0.00 0.00 32.28 2.59
44 45 0.744874 GCTATCCGTGGCTGTAGACA 59.255 55.000 0.00 0.00 0.00 3.41
66 67 1.135489 TGGCTGTAGACGCTCTAAACG 60.135 52.381 0.00 0.00 29.58 3.60
130 131 0.972983 ATCACGTGGAGGGAGGACAG 60.973 60.000 17.00 0.00 34.57 3.51
133 134 0.629596 ACGTGGAGGGAGGACAGATA 59.370 55.000 0.00 0.00 0.00 1.98
368 369 2.347114 CACGGAGTCCATGCACCA 59.653 61.111 10.49 0.00 41.61 4.17
399 400 6.828785 ACAACTGGAATCAAGTCTTACAAAGT 59.171 34.615 0.00 0.00 0.00 2.66
437 438 1.426041 CCGGCCAATACACGTGCTAC 61.426 60.000 17.22 0.00 0.00 3.58
438 439 0.738063 CGGCCAATACACGTGCTACA 60.738 55.000 17.22 0.00 0.00 2.74
449 450 1.990563 ACGTGCTACACTATTTCGCAC 59.009 47.619 0.00 0.00 45.39 5.34
458 459 1.376609 CTATTTCGCACCCAGCCCAC 61.377 60.000 0.00 0.00 41.38 4.61
493 494 8.256611 TGAGCTTCAATAACTAGTGAATGTTC 57.743 34.615 0.00 4.21 39.22 3.18
498 499 6.693466 TCAATAACTAGTGAATGTTCGGTGA 58.307 36.000 0.00 0.00 0.00 4.02
593 594 5.126067 TGGTAATTGCTTCCTAGAGATTGC 58.874 41.667 0.00 0.00 0.00 3.56
638 639 2.611224 CCATCCGCCCGTTAGTATTACC 60.611 54.545 0.00 0.00 0.00 2.85
676 677 3.494749 CGGTGGGTTTTGTCAGGTAGTTA 60.495 47.826 0.00 0.00 0.00 2.24
683 684 5.353400 GGTTTTGTCAGGTAGTTATAGTGGC 59.647 44.000 0.00 0.00 0.00 5.01
726 728 8.986477 AAATTCCAATAAAAATGAAGTCTCGG 57.014 30.769 0.00 0.00 0.00 4.63
781 787 0.326264 CTCCTGGGGGAAAGTGACAG 59.674 60.000 0.00 0.00 41.69 3.51
837 843 2.786495 CCCACCGTGGAGAGATCCG 61.786 68.421 19.81 0.00 40.96 4.18
1033 1154 2.153039 CGCAAGCTCAACATCGACA 58.847 52.632 0.00 0.00 0.00 4.35
1321 1510 1.683917 CCCTCATCCTCACCTTCTACG 59.316 57.143 0.00 0.00 0.00 3.51
1927 2171 6.982852 TGCCAAACGGTAAATTTAATTCTGA 58.017 32.000 0.00 0.00 0.00 3.27
2004 2290 5.009631 TGTCCTTCATGTTACAGATTTGGG 58.990 41.667 0.00 0.00 0.00 4.12
2114 2400 1.561542 AGCTGGACCCTGTTTATCCTG 59.438 52.381 0.00 0.00 35.24 3.86
2115 2401 2.019156 GCTGGACCCTGTTTATCCTGC 61.019 57.143 5.74 5.74 46.11 4.85
2153 2439 6.547141 CCCTGCAGAATTTCAAAGTATGGATA 59.453 38.462 17.39 0.00 0.00 2.59
2182 2468 7.885399 ACTCTTTCTAGAAATGGCATGTTACTT 59.115 33.333 18.02 0.00 0.00 2.24
2231 2536 6.750963 GCAGGAAGTTGATCTGATTTTCAATC 59.249 38.462 0.00 0.00 34.60 2.67
2255 2560 5.047306 CACTCACCAAATCTAGTCTACCACA 60.047 44.000 0.00 0.00 0.00 4.17
2283 2637 8.223177 AGATAAAAGTAGTGCGTACAGTATCT 57.777 34.615 6.38 5.85 34.27 1.98
2426 2795 4.987832 ACAAATAAACACGTGAGCAACAA 58.012 34.783 25.01 0.18 0.00 2.83
2429 2798 1.908065 AAACACGTGAGCAACAAAGC 58.092 45.000 25.01 0.00 0.00 3.51
2656 3028 5.845985 TTCGAGATCTGATGTGTTTCAAC 57.154 39.130 0.00 0.00 0.00 3.18
2665 3037 7.156876 TCTGATGTGTTTCAACTTTCAACTT 57.843 32.000 0.00 0.00 0.00 2.66
2753 3144 9.759259 GCAACTTTTTAAATGGCAAAGATATTC 57.241 29.630 0.00 0.00 32.73 1.75
2794 3190 1.714011 TTGTCCTGCATGGGTGTGGA 61.714 55.000 0.00 0.00 36.20 4.02
2805 3201 4.521256 GCATGGGTGTGGAAAGTTTACTTA 59.479 41.667 0.00 0.00 34.61 2.24
2885 3282 1.725931 GCGTGAAAAAGCCTGACGATG 60.726 52.381 0.00 0.00 31.71 3.84
2890 3287 0.607489 AAAAGCCTGACGATGCTGCT 60.607 50.000 0.00 0.00 38.00 4.24
2891 3288 0.250234 AAAGCCTGACGATGCTGCTA 59.750 50.000 0.00 0.00 38.00 3.49
2899 3296 2.231235 TGACGATGCTGCTAAGAAGACA 59.769 45.455 0.00 0.00 0.00 3.41
2908 3305 4.378874 GCTGCTAAGAAGACAAATGTGGTC 60.379 45.833 0.00 0.00 35.50 4.02
3114 3523 1.142465 CCAGGTGGATGAAGCTAGCAT 59.858 52.381 18.83 4.30 37.39 3.79
3137 3546 1.134788 ACCGGATTAAGGAGCAACTCG 60.135 52.381 9.46 0.00 0.00 4.18
3252 3664 0.904649 AGACTGATGATGGCGTCCAA 59.095 50.000 3.88 0.00 36.95 3.53
3259 3671 0.612744 TGATGGCGTCCAATGAGTCA 59.387 50.000 3.88 0.00 36.95 3.41
3267 3679 5.163663 TGGCGTCCAATGAGTCATAATTTTC 60.164 40.000 5.94 0.00 0.00 2.29
3270 3682 5.959527 CGTCCAATGAGTCATAATTTTCGTG 59.040 40.000 5.94 0.00 0.00 4.35
3273 3685 8.116753 GTCCAATGAGTCATAATTTTCGTGTAG 58.883 37.037 5.94 0.00 0.00 2.74
3275 3687 8.116753 CCAATGAGTCATAATTTTCGTGTAGTC 58.883 37.037 5.94 0.00 0.00 2.59
3276 3688 6.864560 TGAGTCATAATTTTCGTGTAGTCG 57.135 37.500 0.00 0.00 0.00 4.18
3277 3689 6.384224 TGAGTCATAATTTTCGTGTAGTCGT 58.616 36.000 0.00 0.00 0.00 4.34
3278 3690 6.864685 TGAGTCATAATTTTCGTGTAGTCGTT 59.135 34.615 0.00 0.00 0.00 3.85
3279 3691 7.061441 TGAGTCATAATTTTCGTGTAGTCGTTC 59.939 37.037 0.00 0.00 0.00 3.95
3280 3692 7.088905 AGTCATAATTTTCGTGTAGTCGTTCT 58.911 34.615 0.00 0.00 0.00 3.01
3282 3694 7.682865 GTCATAATTTTCGTGTAGTCGTTCTTG 59.317 37.037 0.00 0.00 0.00 3.02
3283 3695 4.985044 ATTTTCGTGTAGTCGTTCTTGG 57.015 40.909 0.00 0.00 0.00 3.61
3284 3696 1.774639 TTCGTGTAGTCGTTCTTGGC 58.225 50.000 0.00 0.00 0.00 4.52
3288 3700 2.285756 CGTGTAGTCGTTCTTGGCAAAA 59.714 45.455 0.00 0.00 0.00 2.44
3314 3726 7.404671 AAAACTGTAGAATTGTGGTTTCTGT 57.595 32.000 0.00 0.00 35.19 3.41
3316 3728 8.514330 AAACTGTAGAATTGTGGTTTCTGTAA 57.486 30.769 0.00 0.00 35.19 2.41
3331 3743 7.365840 GTTTCTGTAACCCTAGTCTTCAATG 57.634 40.000 0.00 0.00 0.00 2.82
3335 3747 6.269077 TCTGTAACCCTAGTCTTCAATGTTGA 59.731 38.462 0.00 0.00 34.92 3.18
3336 3748 7.016153 TGTAACCCTAGTCTTCAATGTTGAT 57.984 36.000 0.00 0.00 37.00 2.57
3337 3749 6.878923 TGTAACCCTAGTCTTCAATGTTGATG 59.121 38.462 0.00 0.00 37.00 3.07
3338 3750 4.265073 ACCCTAGTCTTCAATGTTGATGC 58.735 43.478 0.00 0.00 37.00 3.91
3339 3751 4.018960 ACCCTAGTCTTCAATGTTGATGCT 60.019 41.667 0.00 4.28 37.00 3.79
3341 3753 5.416952 CCCTAGTCTTCAATGTTGATGCTTT 59.583 40.000 0.00 0.00 37.00 3.51
3344 3756 6.010294 AGTCTTCAATGTTGATGCTTTCTG 57.990 37.500 0.00 0.00 37.00 3.02
3345 3757 4.620184 GTCTTCAATGTTGATGCTTTCTGC 59.380 41.667 0.00 0.00 37.00 4.26
3368 4692 5.389516 GCAATTCACTCGTTCTTCGTGTAAT 60.390 40.000 0.00 0.00 42.95 1.89
3380 4704 7.148869 CGTTCTTCGTGTAATTGACATCAACTA 60.149 37.037 0.00 0.00 41.14 2.24
3466 4790 4.977963 CCATGATTGCTTTTATACTTGCCG 59.022 41.667 0.00 0.00 0.00 5.69
3477 4808 9.158233 GCTTTTATACTTGCCGTATTATGGATA 57.842 33.333 6.10 0.00 39.48 2.59
3669 5001 1.885887 TGAAGCCATTTGTGCTACCAC 59.114 47.619 0.00 0.00 38.34 4.16
3677 5009 1.969085 TGTGCTACCACACTACCGG 59.031 57.895 0.00 0.00 46.51 5.28
3678 5010 0.540133 TGTGCTACCACACTACCGGA 60.540 55.000 9.46 0.00 46.51 5.14
3679 5011 0.604578 GTGCTACCACACTACCGGAA 59.395 55.000 9.46 0.00 41.67 4.30
3680 5012 0.604578 TGCTACCACACTACCGGAAC 59.395 55.000 9.46 0.00 0.00 3.62
3681 5013 0.604578 GCTACCACACTACCGGAACA 59.395 55.000 9.46 0.00 0.00 3.18
3682 5014 1.403780 GCTACCACACTACCGGAACAG 60.404 57.143 9.46 4.49 0.00 3.16
3683 5015 1.203994 CTACCACACTACCGGAACAGG 59.796 57.143 9.46 4.53 37.30 4.00
3684 5016 1.295423 CCACACTACCGGAACAGGG 59.705 63.158 9.46 5.74 35.02 4.45
3685 5017 1.375523 CACACTACCGGAACAGGGC 60.376 63.158 9.46 0.00 35.02 5.19
3686 5018 1.535687 ACACTACCGGAACAGGGCT 60.536 57.895 9.46 0.00 35.02 5.19
3687 5019 1.218316 CACTACCGGAACAGGGCTC 59.782 63.158 9.46 0.00 35.02 4.70
3688 5020 2.348888 ACTACCGGAACAGGGCTCG 61.349 63.158 9.46 0.00 35.02 5.03
3689 5021 2.036098 TACCGGAACAGGGCTCGA 59.964 61.111 9.46 0.00 35.02 4.04
3690 5022 1.380785 TACCGGAACAGGGCTCGAT 60.381 57.895 9.46 0.00 35.02 3.59
3691 5023 1.672854 TACCGGAACAGGGCTCGATG 61.673 60.000 9.46 0.00 35.02 3.84
3692 5024 2.892425 CGGAACAGGGCTCGATGC 60.892 66.667 0.00 0.00 41.94 3.91
3715 5047 3.851128 GCCCCTGTCGGCCTACTC 61.851 72.222 9.09 0.00 43.66 2.59
3716 5048 3.155167 CCCCTGTCGGCCTACTCC 61.155 72.222 9.09 0.00 0.00 3.85
3717 5049 2.363795 CCCTGTCGGCCTACTCCA 60.364 66.667 9.09 0.00 0.00 3.86
3718 5050 2.427245 CCCTGTCGGCCTACTCCAG 61.427 68.421 9.09 3.33 0.00 3.86
3736 5068 2.590007 GCTATGCCGACAGCCAGG 60.590 66.667 0.00 0.00 42.71 4.45
3737 5069 2.903357 CTATGCCGACAGCCAGGT 59.097 61.111 0.00 0.00 42.71 4.00
3738 5070 1.227380 CTATGCCGACAGCCAGGTC 60.227 63.158 0.00 0.00 42.71 3.85
3739 5071 2.650813 CTATGCCGACAGCCAGGTCC 62.651 65.000 0.00 0.00 42.71 4.46
3741 5073 4.767255 GCCGACAGCCAGGTCCAG 62.767 72.222 0.00 0.00 34.24 3.86
3742 5074 4.087892 CCGACAGCCAGGTCCAGG 62.088 72.222 0.00 0.00 34.24 4.45
3753 5085 3.376078 GTCCAGGCCGTCGGTGTA 61.376 66.667 13.94 0.00 0.00 2.90
3754 5086 3.376078 TCCAGGCCGTCGGTGTAC 61.376 66.667 13.94 1.25 0.00 2.90
3755 5087 3.687102 CCAGGCCGTCGGTGTACA 61.687 66.667 13.94 0.00 0.00 2.90
3756 5088 2.340809 CAGGCCGTCGGTGTACAA 59.659 61.111 13.94 0.00 0.00 2.41
3757 5089 2.025418 CAGGCCGTCGGTGTACAAC 61.025 63.158 13.94 0.00 0.00 3.32
3758 5090 2.029369 GGCCGTCGGTGTACAACA 59.971 61.111 13.94 0.00 0.00 3.33
3759 5091 2.025418 GGCCGTCGGTGTACAACAG 61.025 63.158 13.94 4.07 0.00 3.16
3760 5092 1.300388 GCCGTCGGTGTACAACAGT 60.300 57.895 13.94 0.00 0.00 3.55
3761 5093 1.280206 GCCGTCGGTGTACAACAGTC 61.280 60.000 13.94 1.24 0.00 3.51
3762 5094 1.000233 CCGTCGGTGTACAACAGTCG 61.000 60.000 12.27 12.40 35.87 4.18
3763 5095 1.602877 CGTCGGTGTACAACAGTCGC 61.603 60.000 12.27 0.00 30.50 5.19
3764 5096 1.007038 TCGGTGTACAACAGTCGCC 60.007 57.895 12.27 0.00 0.00 5.54
3765 5097 2.369629 CGGTGTACAACAGTCGCCG 61.370 63.158 12.27 8.05 45.91 6.46
3766 5098 2.025418 GGTGTACAACAGTCGCCGG 61.025 63.158 5.89 0.00 0.00 6.13
3767 5099 2.025418 GTGTACAACAGTCGCCGGG 61.025 63.158 2.18 0.00 0.00 5.73
3768 5100 3.116531 GTACAACAGTCGCCGGGC 61.117 66.667 9.54 9.54 0.00 6.13
3769 5101 3.307906 TACAACAGTCGCCGGGCT 61.308 61.111 18.34 0.00 0.00 5.19
3770 5102 1.978080 TACAACAGTCGCCGGGCTA 60.978 57.895 18.34 2.50 0.00 3.93
3771 5103 1.324740 TACAACAGTCGCCGGGCTAT 61.325 55.000 18.34 0.00 0.00 2.97
3772 5104 1.883084 CAACAGTCGCCGGGCTATC 60.883 63.158 18.34 7.13 0.00 2.08
3773 5105 3.090219 AACAGTCGCCGGGCTATCC 62.090 63.158 18.34 1.73 0.00 2.59
3784 5116 1.301293 GGCTATCCCCAGCTATGCC 59.699 63.158 0.00 0.00 41.50 4.40
3785 5117 1.078848 GCTATCCCCAGCTATGCCG 60.079 63.158 0.00 0.00 38.57 5.69
3786 5118 1.544825 GCTATCCCCAGCTATGCCGA 61.545 60.000 0.00 0.00 38.57 5.54
3787 5119 0.247736 CTATCCCCAGCTATGCCGAC 59.752 60.000 0.00 0.00 0.00 4.79
3788 5120 1.532604 TATCCCCAGCTATGCCGACG 61.533 60.000 0.00 0.00 0.00 5.12
3789 5121 4.609018 CCCCAGCTATGCCGACGG 62.609 72.222 10.29 10.29 0.00 4.79
3807 5139 4.323477 CCCCCGTCGGCACAGAAA 62.323 66.667 5.50 0.00 0.00 2.52
3808 5140 2.281208 CCCCGTCGGCACAGAAAA 60.281 61.111 5.50 0.00 0.00 2.29
3809 5141 2.325082 CCCCGTCGGCACAGAAAAG 61.325 63.158 5.50 0.00 0.00 2.27
3810 5142 2.556287 CCGTCGGCACAGAAAAGC 59.444 61.111 0.00 0.00 0.00 3.51
3815 5147 2.556287 GGCACAGAAAAGCCGTCG 59.444 61.111 0.00 0.00 41.70 5.12
3816 5148 2.556287 GCACAGAAAAGCCGTCGG 59.444 61.111 6.99 6.99 0.00 4.79
3817 5149 2.251642 GCACAGAAAAGCCGTCGGT 61.252 57.895 13.94 0.00 0.00 4.69
3818 5150 1.782028 GCACAGAAAAGCCGTCGGTT 61.782 55.000 13.94 3.31 0.00 4.44
3819 5151 0.661020 CACAGAAAAGCCGTCGGTTT 59.339 50.000 13.94 10.78 41.38 3.27
3820 5152 1.868498 CACAGAAAAGCCGTCGGTTTA 59.132 47.619 14.15 0.00 38.73 2.01
3821 5153 2.096417 CACAGAAAAGCCGTCGGTTTAG 60.096 50.000 14.15 7.27 38.73 1.85
3822 5154 1.136057 CAGAAAAGCCGTCGGTTTAGC 60.136 52.381 14.15 8.99 38.73 3.09
3823 5155 0.167470 GAAAAGCCGTCGGTTTAGCC 59.833 55.000 14.15 2.92 38.73 3.93
3824 5156 1.239296 AAAAGCCGTCGGTTTAGCCC 61.239 55.000 14.15 0.00 38.73 5.19
3825 5157 2.400269 AAAGCCGTCGGTTTAGCCCA 62.400 55.000 14.15 0.00 37.91 5.36
3826 5158 2.798148 AAGCCGTCGGTTTAGCCCAG 62.798 60.000 12.09 0.00 0.00 4.45
3827 5159 2.818274 CCGTCGGTTTAGCCCAGC 60.818 66.667 2.08 0.00 0.00 4.85
3828 5160 2.818274 CGTCGGTTTAGCCCAGCC 60.818 66.667 0.00 0.00 0.00 4.85
3829 5161 2.669240 GTCGGTTTAGCCCAGCCT 59.331 61.111 0.00 0.00 0.00 4.58
3830 5162 1.902556 GTCGGTTTAGCCCAGCCTA 59.097 57.895 0.00 0.00 0.00 3.93
3831 5163 0.461516 GTCGGTTTAGCCCAGCCTAC 60.462 60.000 0.00 0.00 0.00 3.18
3832 5164 1.520787 CGGTTTAGCCCAGCCTACG 60.521 63.158 0.00 0.00 0.00 3.51
3833 5165 1.818363 GGTTTAGCCCAGCCTACGC 60.818 63.158 0.00 0.00 0.00 4.42
3834 5166 1.818363 GTTTAGCCCAGCCTACGCC 60.818 63.158 0.00 0.00 34.57 5.68
3835 5167 1.993391 TTTAGCCCAGCCTACGCCT 60.993 57.895 0.00 0.00 34.57 5.52
3836 5168 0.688418 TTTAGCCCAGCCTACGCCTA 60.688 55.000 0.00 0.00 34.57 3.93
3837 5169 0.471211 TTAGCCCAGCCTACGCCTAT 60.471 55.000 0.00 0.00 34.57 2.57
3838 5170 0.406750 TAGCCCAGCCTACGCCTATA 59.593 55.000 0.00 0.00 34.57 1.31
3839 5171 0.900647 AGCCCAGCCTACGCCTATAG 60.901 60.000 0.00 0.00 34.57 1.31
3840 5172 1.186267 GCCCAGCCTACGCCTATAGT 61.186 60.000 0.00 0.00 34.57 2.12
3841 5173 1.339097 CCCAGCCTACGCCTATAGTT 58.661 55.000 0.00 0.00 34.57 2.24
3842 5174 1.000955 CCCAGCCTACGCCTATAGTTG 59.999 57.143 0.00 0.00 34.57 3.16
3843 5175 1.687123 CCAGCCTACGCCTATAGTTGT 59.313 52.381 0.00 0.00 34.57 3.32
3844 5176 2.102588 CCAGCCTACGCCTATAGTTGTT 59.897 50.000 0.00 0.00 34.57 2.83
3845 5177 3.123804 CAGCCTACGCCTATAGTTGTTG 58.876 50.000 0.00 0.00 34.57 3.33
3846 5178 2.764572 AGCCTACGCCTATAGTTGTTGT 59.235 45.455 0.00 0.00 34.57 3.32
3847 5179 3.121544 GCCTACGCCTATAGTTGTTGTC 58.878 50.000 0.00 0.00 0.00 3.18
3848 5180 3.369385 CCTACGCCTATAGTTGTTGTCG 58.631 50.000 0.00 0.00 0.00 4.35
3849 5181 2.288961 ACGCCTATAGTTGTTGTCGG 57.711 50.000 0.00 0.00 0.00 4.79
3850 5182 0.928229 CGCCTATAGTTGTTGTCGGC 59.072 55.000 0.00 0.00 0.00 5.54
3851 5183 1.737696 CGCCTATAGTTGTTGTCGGCA 60.738 52.381 0.00 0.00 35.89 5.69
3852 5184 2.561569 GCCTATAGTTGTTGTCGGCAT 58.438 47.619 0.00 0.00 36.16 4.40
3853 5185 3.724374 GCCTATAGTTGTTGTCGGCATA 58.276 45.455 0.00 0.00 36.16 3.14
3854 5186 3.493503 GCCTATAGTTGTTGTCGGCATAC 59.506 47.826 0.00 0.00 36.16 2.39
3855 5187 4.689071 CCTATAGTTGTTGTCGGCATACA 58.311 43.478 0.00 0.00 0.00 2.29
3856 5188 4.506654 CCTATAGTTGTTGTCGGCATACAC 59.493 45.833 0.00 0.00 0.00 2.90
3857 5189 2.248280 AGTTGTTGTCGGCATACACA 57.752 45.000 0.00 0.00 0.00 3.72
3858 5190 2.143122 AGTTGTTGTCGGCATACACAG 58.857 47.619 0.00 0.00 0.00 3.66
3859 5191 1.196808 GTTGTTGTCGGCATACACAGG 59.803 52.381 0.00 0.00 0.00 4.00
3860 5192 0.953471 TGTTGTCGGCATACACAGGC 60.953 55.000 0.00 0.00 0.00 4.85
3865 5197 2.890474 GGCATACACAGGCCGTCG 60.890 66.667 0.00 0.00 42.67 5.12
3866 5198 2.890474 GCATACACAGGCCGTCGG 60.890 66.667 6.99 6.99 0.00 4.79
3909 5241 4.124351 CTCGTGACGGGCGGCTAA 62.124 66.667 9.56 0.00 0.00 3.09
3910 5242 4.424566 TCGTGACGGGCGGCTAAC 62.425 66.667 9.56 1.38 0.00 2.34
3964 5296 4.861883 CGTCGGCATAGATACGGG 57.138 61.111 0.00 0.00 0.00 5.28
3965 5297 1.954528 CGTCGGCATAGATACGGGT 59.045 57.895 0.00 0.00 0.00 5.28
3966 5298 0.386858 CGTCGGCATAGATACGGGTG 60.387 60.000 0.00 0.00 0.00 4.61
3967 5299 0.666577 GTCGGCATAGATACGGGTGC 60.667 60.000 0.00 0.00 36.88 5.01
3970 5302 3.935993 GCATAGATACGGGTGCCAT 57.064 52.632 0.00 0.00 0.00 4.40
3971 5303 1.442769 GCATAGATACGGGTGCCATG 58.557 55.000 0.00 0.00 0.00 3.66
3972 5304 1.270839 GCATAGATACGGGTGCCATGT 60.271 52.381 0.00 0.00 0.00 3.21
3973 5305 2.688507 CATAGATACGGGTGCCATGTC 58.311 52.381 0.00 0.00 0.00 3.06
3974 5306 1.783071 TAGATACGGGTGCCATGTCA 58.217 50.000 0.00 0.00 0.00 3.58
3975 5307 1.131638 AGATACGGGTGCCATGTCAT 58.868 50.000 0.00 0.00 0.00 3.06
3976 5308 1.070758 AGATACGGGTGCCATGTCATC 59.929 52.381 0.00 0.00 0.00 2.92
3977 5309 0.249868 ATACGGGTGCCATGTCATCG 60.250 55.000 1.87 1.87 0.00 3.84
3978 5310 1.324005 TACGGGTGCCATGTCATCGA 61.324 55.000 8.91 0.00 0.00 3.59
3979 5311 1.227645 CGGGTGCCATGTCATCGAT 60.228 57.895 0.00 0.00 0.00 3.59
3980 5312 1.224069 CGGGTGCCATGTCATCGATC 61.224 60.000 0.00 0.00 0.00 3.69
3981 5313 0.886490 GGGTGCCATGTCATCGATCC 60.886 60.000 0.00 0.00 0.00 3.36
3982 5314 1.224069 GGTGCCATGTCATCGATCCG 61.224 60.000 0.00 0.00 0.00 4.18
3983 5315 0.249447 GTGCCATGTCATCGATCCGA 60.249 55.000 0.00 0.00 41.13 4.55
3984 5316 0.463620 TGCCATGTCATCGATCCGAA 59.536 50.000 0.00 0.00 39.99 4.30
3985 5317 1.143305 GCCATGTCATCGATCCGAAG 58.857 55.000 0.00 0.00 39.99 3.79
3986 5318 1.269778 GCCATGTCATCGATCCGAAGA 60.270 52.381 0.00 0.00 39.99 2.87
3987 5319 2.670479 CCATGTCATCGATCCGAAGAG 58.330 52.381 0.00 0.00 39.99 2.85
3988 5320 2.057316 CATGTCATCGATCCGAAGAGC 58.943 52.381 0.00 0.00 39.99 4.09
3989 5321 1.102978 TGTCATCGATCCGAAGAGCA 58.897 50.000 0.00 0.00 39.99 4.26
3990 5322 1.202302 TGTCATCGATCCGAAGAGCAC 60.202 52.381 0.00 0.00 39.99 4.40
3991 5323 0.385751 TCATCGATCCGAAGAGCACC 59.614 55.000 0.00 0.00 39.99 5.01
3992 5324 0.936764 CATCGATCCGAAGAGCACCG 60.937 60.000 0.00 0.00 39.99 4.94
3993 5325 1.101635 ATCGATCCGAAGAGCACCGA 61.102 55.000 0.00 0.00 39.99 4.69
3994 5326 1.586564 CGATCCGAAGAGCACCGAC 60.587 63.158 0.00 0.00 0.00 4.79
3995 5327 1.227002 GATCCGAAGAGCACCGACC 60.227 63.158 0.00 0.00 0.00 4.79
3996 5328 1.945354 GATCCGAAGAGCACCGACCA 61.945 60.000 0.00 0.00 0.00 4.02
3997 5329 1.949847 ATCCGAAGAGCACCGACCAG 61.950 60.000 0.00 0.00 0.00 4.00
3999 5331 2.636412 CGAAGAGCACCGACCAGGA 61.636 63.158 0.00 0.00 45.00 3.86
4000 5332 1.079750 GAAGAGCACCGACCAGGAC 60.080 63.158 0.00 0.00 45.00 3.85
4001 5333 2.508586 GAAGAGCACCGACCAGGACC 62.509 65.000 0.00 0.00 45.00 4.46
4002 5334 4.083862 GAGCACCGACCAGGACCC 62.084 72.222 0.00 0.00 45.00 4.46
4003 5335 4.640690 AGCACCGACCAGGACCCT 62.641 66.667 0.00 0.00 45.00 4.34
4004 5336 2.682494 GCACCGACCAGGACCCTA 60.682 66.667 0.00 0.00 45.00 3.53
4005 5337 2.064581 GCACCGACCAGGACCCTAT 61.065 63.158 0.00 0.00 45.00 2.57
4006 5338 1.823295 CACCGACCAGGACCCTATG 59.177 63.158 0.00 0.00 45.00 2.23
4007 5339 2.064581 ACCGACCAGGACCCTATGC 61.065 63.158 0.00 0.00 45.00 3.14
4008 5340 2.808206 CCGACCAGGACCCTATGCC 61.808 68.421 0.00 0.00 45.00 4.40
4009 5341 2.822399 GACCAGGACCCTATGCCG 59.178 66.667 0.00 0.00 0.00 5.69
4010 5342 2.040606 ACCAGGACCCTATGCCGT 59.959 61.111 0.00 0.00 0.00 5.68
4011 5343 2.029307 GACCAGGACCCTATGCCGTC 62.029 65.000 0.00 0.00 0.00 4.79
4012 5344 2.417516 CAGGACCCTATGCCGTCG 59.582 66.667 0.00 0.00 0.00 5.12
4013 5345 2.838225 AGGACCCTATGCCGTCGG 60.838 66.667 6.99 6.99 0.00 4.79
4024 5356 3.630204 CCGTCGGCATATCTGTGC 58.370 61.111 0.00 0.00 44.31 4.57
4030 5362 3.630204 GCATATCTGTGCCGACGG 58.370 61.111 10.29 10.29 39.18 4.79
4031 5363 1.227263 GCATATCTGTGCCGACGGT 60.227 57.895 16.73 0.00 39.18 4.83
4032 5364 1.215655 GCATATCTGTGCCGACGGTC 61.216 60.000 16.73 8.54 39.18 4.79
4033 5365 0.385751 CATATCTGTGCCGACGGTCT 59.614 55.000 16.73 0.00 0.00 3.85
4034 5366 0.385751 ATATCTGTGCCGACGGTCTG 59.614 55.000 16.73 12.67 0.00 3.51
4035 5367 0.678684 TATCTGTGCCGACGGTCTGA 60.679 55.000 16.73 17.06 0.00 3.27
4036 5368 2.214181 ATCTGTGCCGACGGTCTGAC 62.214 60.000 16.73 8.01 0.00 3.51
4037 5369 3.207547 CTGTGCCGACGGTCTGACA 62.208 63.158 16.73 12.01 0.00 3.58
4038 5370 2.028484 GTGCCGACGGTCTGACAA 59.972 61.111 16.73 0.00 0.00 3.18
4039 5371 2.022129 GTGCCGACGGTCTGACAAG 61.022 63.158 16.73 5.60 0.00 3.16
4040 5372 2.197605 TGCCGACGGTCTGACAAGA 61.198 57.895 16.73 0.00 0.00 3.02
4050 5382 2.991434 TCTGACAAGACTACGCTGAC 57.009 50.000 0.00 0.00 0.00 3.51
4067 5399 2.352001 CGTCATCTACGCCGACGG 60.352 66.667 10.29 10.29 46.59 4.79
4068 5400 2.025727 GTCATCTACGCCGACGGG 59.974 66.667 17.22 8.43 46.04 5.28
4103 5435 0.850856 GCCGTCCGCTTAGATTTACG 59.149 55.000 0.00 0.00 0.00 3.18
4104 5436 0.850856 CCGTCCGCTTAGATTTACGC 59.149 55.000 0.00 0.00 0.00 4.42
4105 5437 0.850856 CGTCCGCTTAGATTTACGCC 59.149 55.000 0.00 0.00 0.00 5.68
4106 5438 0.850856 GTCCGCTTAGATTTACGCCG 59.149 55.000 0.00 0.00 0.00 6.46
4107 5439 0.740149 TCCGCTTAGATTTACGCCGA 59.260 50.000 0.00 0.00 0.00 5.54
4108 5440 0.850856 CCGCTTAGATTTACGCCGAC 59.149 55.000 0.00 0.00 0.00 4.79
4110 5442 0.850856 GCTTAGATTTACGCCGACGG 59.149 55.000 10.29 10.29 46.04 4.79
4111 5443 1.484356 CTTAGATTTACGCCGACGGG 58.516 55.000 17.22 8.43 46.04 5.28
4112 5444 1.066002 CTTAGATTTACGCCGACGGGA 59.934 52.381 17.22 0.00 46.04 5.14
4113 5445 1.102154 TAGATTTACGCCGACGGGAA 58.898 50.000 17.22 0.00 46.04 3.97
4114 5446 0.179119 AGATTTACGCCGACGGGAAG 60.179 55.000 17.22 0.00 46.04 3.46
4115 5447 0.179129 GATTTACGCCGACGGGAAGA 60.179 55.000 17.22 0.00 46.04 2.87
4116 5448 0.247185 ATTTACGCCGACGGGAAGAA 59.753 50.000 17.22 4.59 46.04 2.52
4117 5449 0.388907 TTTACGCCGACGGGAAGAAG 60.389 55.000 17.22 0.00 46.04 2.85
4118 5450 2.824071 TTACGCCGACGGGAAGAAGC 62.824 60.000 17.22 0.00 46.04 3.86
4120 5452 4.083862 GCCGACGGGAAGAAGCCT 62.084 66.667 17.22 0.00 34.06 4.58
4121 5453 2.718073 GCCGACGGGAAGAAGCCTA 61.718 63.158 17.22 0.00 34.06 3.93
4122 5454 2.029307 GCCGACGGGAAGAAGCCTAT 62.029 60.000 17.22 0.00 34.06 2.57
4123 5455 0.249489 CCGACGGGAAGAAGCCTATG 60.249 60.000 5.81 0.00 34.06 2.23
4124 5456 0.876342 CGACGGGAAGAAGCCTATGC 60.876 60.000 0.00 0.00 37.95 3.14
4125 5457 0.533085 GACGGGAAGAAGCCTATGCC 60.533 60.000 0.00 0.00 38.69 4.40
4126 5458 1.595382 CGGGAAGAAGCCTATGCCG 60.595 63.158 0.00 0.00 41.57 5.69
4127 5459 1.830145 GGGAAGAAGCCTATGCCGA 59.170 57.895 0.00 0.00 38.69 5.54
4128 5460 0.533085 GGGAAGAAGCCTATGCCGAC 60.533 60.000 0.00 0.00 38.69 4.79
4129 5461 0.876342 GGAAGAAGCCTATGCCGACG 60.876 60.000 0.00 0.00 38.69 5.12
4130 5462 0.876342 GAAGAAGCCTATGCCGACGG 60.876 60.000 10.29 10.29 38.69 4.79
4168 5500 4.104143 CCGTTGATCCGGTAGTGC 57.896 61.111 0.00 0.00 43.07 4.40
4169 5501 1.520787 CCGTTGATCCGGTAGTGCC 60.521 63.158 0.00 0.00 43.07 5.01
4170 5502 1.216977 CGTTGATCCGGTAGTGCCA 59.783 57.895 0.00 0.00 36.97 4.92
4171 5503 0.806102 CGTTGATCCGGTAGTGCCAG 60.806 60.000 0.00 0.00 36.97 4.85
4172 5504 0.462047 GTTGATCCGGTAGTGCCAGG 60.462 60.000 0.00 0.00 36.97 4.45
4173 5505 0.616395 TTGATCCGGTAGTGCCAGGA 60.616 55.000 11.84 11.84 41.61 3.86
4174 5506 0.398522 TGATCCGGTAGTGCCAGGAT 60.399 55.000 18.51 18.51 46.10 3.24
4175 5507 0.034059 GATCCGGTAGTGCCAGGATG 59.966 60.000 21.75 0.00 44.66 3.51
4176 5508 2.044806 ATCCGGTAGTGCCAGGATGC 62.045 60.000 18.01 0.00 43.75 3.91
4177 5509 2.584064 CGGTAGTGCCAGGATGCA 59.416 61.111 0.00 0.00 39.37 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.815421 CCGACCTCTCAAATGCCCG 60.815 63.158 0.00 0.00 0.00 6.13
3 4 1.452108 CCCGACCTCTCAAATGCCC 60.452 63.158 0.00 0.00 0.00 5.36
4 5 0.322546 AACCCGACCTCTCAAATGCC 60.323 55.000 0.00 0.00 0.00 4.40
5 6 1.200020 CAAACCCGACCTCTCAAATGC 59.800 52.381 0.00 0.00 0.00 3.56
7 8 1.073923 AGCAAACCCGACCTCTCAAAT 59.926 47.619 0.00 0.00 0.00 2.32
8 9 0.472471 AGCAAACCCGACCTCTCAAA 59.528 50.000 0.00 0.00 0.00 2.69
9 10 1.344065 TAGCAAACCCGACCTCTCAA 58.656 50.000 0.00 0.00 0.00 3.02
10 11 1.480954 GATAGCAAACCCGACCTCTCA 59.519 52.381 0.00 0.00 0.00 3.27
11 12 1.202545 GGATAGCAAACCCGACCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
12 13 0.831307 GGATAGCAAACCCGACCTCT 59.169 55.000 0.00 0.00 0.00 3.69
13 14 0.529992 CGGATAGCAAACCCGACCTC 60.530 60.000 0.00 0.00 45.58 3.85
14 15 1.262640 ACGGATAGCAAACCCGACCT 61.263 55.000 12.55 0.00 45.58 3.85
15 16 1.087771 CACGGATAGCAAACCCGACC 61.088 60.000 12.55 0.00 45.58 4.79
16 17 1.087771 CCACGGATAGCAAACCCGAC 61.088 60.000 12.55 0.00 45.58 4.79
17 18 1.219664 CCACGGATAGCAAACCCGA 59.780 57.895 12.55 0.00 45.58 5.14
19 20 1.077716 AGCCACGGATAGCAAACCC 60.078 57.895 0.00 0.00 0.00 4.11
20 21 0.676782 ACAGCCACGGATAGCAAACC 60.677 55.000 0.00 0.00 0.00 3.27
21 22 1.933853 CTACAGCCACGGATAGCAAAC 59.066 52.381 0.00 0.00 0.00 2.93
22 23 1.828595 TCTACAGCCACGGATAGCAAA 59.171 47.619 0.00 0.00 0.00 3.68
23 24 1.136305 GTCTACAGCCACGGATAGCAA 59.864 52.381 0.00 0.00 0.00 3.91
24 25 0.744874 GTCTACAGCCACGGATAGCA 59.255 55.000 0.00 0.00 0.00 3.49
25 26 0.744874 TGTCTACAGCCACGGATAGC 59.255 55.000 0.00 0.00 0.00 2.97
26 27 2.025155 AGTGTCTACAGCCACGGATAG 58.975 52.381 0.00 0.00 36.69 2.08
27 28 1.749063 CAGTGTCTACAGCCACGGATA 59.251 52.381 0.00 0.00 36.69 2.59
28 29 0.532573 CAGTGTCTACAGCCACGGAT 59.467 55.000 0.00 0.00 36.69 4.18
29 30 1.532604 CCAGTGTCTACAGCCACGGA 61.533 60.000 0.00 0.00 36.69 4.69
30 31 1.079819 CCAGTGTCTACAGCCACGG 60.080 63.158 0.00 0.00 36.69 4.94
31 32 1.738099 GCCAGTGTCTACAGCCACG 60.738 63.158 0.00 0.00 36.69 4.94
32 33 0.671781 CAGCCAGTGTCTACAGCCAC 60.672 60.000 0.00 0.00 0.00 5.01
33 34 1.121407 ACAGCCAGTGTCTACAGCCA 61.121 55.000 0.00 0.00 31.90 4.75
34 35 0.895530 TACAGCCAGTGTCTACAGCC 59.104 55.000 0.00 0.00 40.94 4.85
35 36 1.819288 TCTACAGCCAGTGTCTACAGC 59.181 52.381 0.00 0.00 40.94 4.40
36 37 2.159503 CGTCTACAGCCAGTGTCTACAG 60.160 54.545 0.00 0.00 40.94 2.74
37 38 1.810755 CGTCTACAGCCAGTGTCTACA 59.189 52.381 0.00 0.00 40.94 2.74
38 39 1.467713 GCGTCTACAGCCAGTGTCTAC 60.468 57.143 0.00 0.00 40.94 2.59
39 40 0.809385 GCGTCTACAGCCAGTGTCTA 59.191 55.000 0.00 0.00 40.94 2.59
40 41 0.896019 AGCGTCTACAGCCAGTGTCT 60.896 55.000 0.00 0.00 40.94 3.41
41 42 0.456995 GAGCGTCTACAGCCAGTGTC 60.457 60.000 0.00 0.00 40.94 3.67
42 43 0.896019 AGAGCGTCTACAGCCAGTGT 60.896 55.000 0.00 0.00 43.86 3.55
43 44 1.095600 TAGAGCGTCTACAGCCAGTG 58.904 55.000 0.00 0.00 34.64 3.66
44 45 1.835494 TTAGAGCGTCTACAGCCAGT 58.165 50.000 0.00 0.00 34.64 4.00
45 46 2.531206 GTTTAGAGCGTCTACAGCCAG 58.469 52.381 0.00 0.00 34.64 4.85
152 153 5.557576 TTTCATGCTATACTCTCCTGCAT 57.442 39.130 0.00 0.00 43.96 3.96
368 369 5.874093 AGACTTGATTCCAGTTGTCATCTT 58.126 37.500 0.00 0.00 0.00 2.40
437 438 1.376609 GGGCTGGGTGCGAAATAGTG 61.377 60.000 0.00 0.00 44.05 2.74
438 439 1.077716 GGGCTGGGTGCGAAATAGT 60.078 57.895 0.00 0.00 44.05 2.12
449 450 2.836981 TCAAATTTTATGGTGGGCTGGG 59.163 45.455 0.00 0.00 0.00 4.45
493 494 0.179129 GCAAATGCCATCCTTCACCG 60.179 55.000 0.00 0.00 34.31 4.94
498 499 0.171007 CGTTCGCAAATGCCATCCTT 59.829 50.000 0.00 0.00 37.91 3.36
593 594 3.738282 CACAGAGAAGAAACTCCAAGACG 59.262 47.826 0.00 0.00 37.60 4.18
638 639 4.635324 ACCCACCGGTACAAATATTTTACG 59.365 41.667 6.87 1.35 42.18 3.18
668 669 5.516984 ACTGTACAGCCACTATAACTACCT 58.483 41.667 22.90 0.00 0.00 3.08
676 677 5.097742 TGCAAATACTGTACAGCCACTAT 57.902 39.130 22.90 10.04 0.00 2.12
704 705 5.475220 TGCCGAGACTTCATTTTTATTGGAA 59.525 36.000 0.00 0.00 0.00 3.53
781 787 2.036764 GAATAAGCCTCGTGCCGTGC 62.037 60.000 0.00 0.51 42.71 5.34
837 843 4.617959 TCGTCGAACTATTGGATTGGATC 58.382 43.478 0.00 0.00 0.00 3.36
1033 1154 1.748493 GCTGATTCTGTCCTCGTCTCT 59.252 52.381 0.00 0.00 0.00 3.10
1249 1382 2.650322 GTCCAAAGGAACCACAGACAA 58.350 47.619 0.00 0.00 31.38 3.18
1321 1510 1.134848 GCTCAGGTGAGGAGATGACAC 60.135 57.143 9.03 0.00 42.29 3.67
1630 1862 2.238646 AGCACGGGGTATCAATCTTGAA 59.761 45.455 0.00 0.00 41.13 2.69
1668 1905 2.032377 GCAACGAAAACGGATGAAGTCA 60.032 45.455 0.00 0.00 0.00 3.41
1927 2171 7.743749 AGAAGAGCAGATGATATGTAAATGGT 58.256 34.615 0.00 0.00 0.00 3.55
2115 2401 3.371063 CAGGGCAGGTGCAGCTTG 61.371 66.667 17.45 12.87 44.36 4.01
2153 2439 6.421485 ACATGCCATTTCTAGAAAGAGTCAT 58.579 36.000 21.75 15.09 33.32 3.06
2160 2446 7.994425 TCAAGTAACATGCCATTTCTAGAAA 57.006 32.000 19.83 19.83 34.46 2.52
2167 2453 7.707893 GCTGAATATTCAAGTAACATGCCATTT 59.292 33.333 18.47 0.00 36.64 2.32
2231 2536 5.047306 TGTGGTAGACTAGATTTGGTGAGTG 60.047 44.000 0.00 0.00 0.00 3.51
2255 2560 7.958053 ACTGTACGCACTACTTTTATCTTTT 57.042 32.000 0.00 0.00 0.00 2.27
2283 2637 6.182627 TCTAAGACGAGGTACAATACAGGAA 58.817 40.000 0.00 0.00 0.00 3.36
2426 2795 7.815068 CGAAACTACAGCTATATAATCCTGCTT 59.185 37.037 0.00 0.00 0.00 3.91
2429 2798 9.776158 CTACGAAACTACAGCTATATAATCCTG 57.224 37.037 0.00 4.16 0.00 3.86
2656 3028 4.028993 TGGGGTAGGCTAAAGTTGAAAG 57.971 45.455 0.00 0.00 0.00 2.62
2665 3037 1.750022 ACCAAGTTGGGGTAGGCTAA 58.250 50.000 25.59 0.00 43.37 3.09
2753 3144 9.796062 GACAATGTAACAACAATTGCAATTAAG 57.204 29.630 23.69 17.54 0.00 1.85
2825 3222 5.105392 GGGATAACTTCATGCATGGACAAAA 60.105 40.000 25.97 11.74 0.00 2.44
2885 3282 3.503748 ACCACATTTGTCTTCTTAGCAGC 59.496 43.478 0.00 0.00 0.00 5.25
2890 3287 4.349636 TCCCAGACCACATTTGTCTTCTTA 59.650 41.667 0.00 0.00 41.02 2.10
2891 3288 3.138283 TCCCAGACCACATTTGTCTTCTT 59.862 43.478 0.00 0.00 41.02 2.52
2899 3296 0.706433 ATGGCTCCCAGACCACATTT 59.294 50.000 0.00 0.00 39.19 2.32
2908 3305 0.471617 AATCCTTCGATGGCTCCCAG 59.528 55.000 12.42 0.00 36.75 4.45
3114 3523 0.326595 TTGCTCCTTAATCCGGTGCA 59.673 50.000 0.00 5.20 45.95 4.57
3137 3546 2.501723 TGGCTGAGGAGGATTCAAGTAC 59.498 50.000 0.00 0.00 0.00 2.73
3252 3664 7.033791 ACGACTACACGAAAATTATGACTCAT 58.966 34.615 0.00 0.00 37.03 2.90
3259 3671 6.401796 GCCAAGAACGACTACACGAAAATTAT 60.402 38.462 0.00 0.00 37.03 1.28
3267 3679 1.493772 TTGCCAAGAACGACTACACG 58.506 50.000 0.00 0.00 39.31 4.49
3290 3702 7.404671 ACAGAAACCACAATTCTACAGTTTT 57.595 32.000 0.00 0.00 35.43 2.43
3291 3703 8.403236 GTTACAGAAACCACAATTCTACAGTTT 58.597 33.333 0.00 0.00 35.43 2.66
3292 3704 7.927048 GTTACAGAAACCACAATTCTACAGTT 58.073 34.615 0.00 0.00 35.43 3.16
3293 3705 7.492352 GTTACAGAAACCACAATTCTACAGT 57.508 36.000 0.00 0.00 35.43 3.55
3307 3719 6.935208 ACATTGAAGACTAGGGTTACAGAAAC 59.065 38.462 0.00 0.00 37.36 2.78
3308 3720 7.074653 ACATTGAAGACTAGGGTTACAGAAA 57.925 36.000 0.00 0.00 0.00 2.52
3309 3721 6.681729 ACATTGAAGACTAGGGTTACAGAA 57.318 37.500 0.00 0.00 0.00 3.02
3310 3722 6.269077 TCAACATTGAAGACTAGGGTTACAGA 59.731 38.462 0.00 0.00 33.55 3.41
3311 3723 6.464222 TCAACATTGAAGACTAGGGTTACAG 58.536 40.000 0.00 0.00 33.55 2.74
3313 3725 6.183360 GCATCAACATTGAAGACTAGGGTTAC 60.183 42.308 0.00 0.00 41.13 2.50
3314 3726 5.880332 GCATCAACATTGAAGACTAGGGTTA 59.120 40.000 0.00 0.00 41.13 2.85
3316 3728 4.018960 AGCATCAACATTGAAGACTAGGGT 60.019 41.667 0.00 0.00 41.13 4.34
3318 3730 6.373774 AGAAAGCATCAACATTGAAGACTAGG 59.626 38.462 0.00 0.00 41.13 3.02
3319 3731 7.242079 CAGAAAGCATCAACATTGAAGACTAG 58.758 38.462 0.00 0.00 41.13 2.57
3320 3732 6.348786 GCAGAAAGCATCAACATTGAAGACTA 60.349 38.462 0.00 0.00 44.79 2.59
3321 3733 5.564259 GCAGAAAGCATCAACATTGAAGACT 60.564 40.000 0.00 0.00 44.79 3.24
3337 3749 2.977405 ACGAGTGAATTGCAGAAAGC 57.023 45.000 0.00 0.00 45.96 3.51
3338 3750 4.739046 AGAACGAGTGAATTGCAGAAAG 57.261 40.909 0.00 0.00 0.00 2.62
3339 3751 4.318760 CGAAGAACGAGTGAATTGCAGAAA 60.319 41.667 0.00 0.00 45.77 2.52
3341 3753 2.731451 CGAAGAACGAGTGAATTGCAGA 59.269 45.455 0.00 0.00 45.77 4.26
3344 3756 2.221055 ACACGAAGAACGAGTGAATTGC 59.779 45.455 1.63 0.00 43.29 3.56
3345 3757 5.570262 TTACACGAAGAACGAGTGAATTG 57.430 39.130 1.63 0.00 44.43 2.32
3346 3758 6.422701 TCAATTACACGAAGAACGAGTGAATT 59.577 34.615 1.63 1.92 44.43 2.17
3347 3759 5.924254 TCAATTACACGAAGAACGAGTGAAT 59.076 36.000 1.63 0.00 44.43 2.57
3348 3760 5.174398 GTCAATTACACGAAGAACGAGTGAA 59.826 40.000 1.63 0.00 44.43 3.18
3349 3761 4.678287 GTCAATTACACGAAGAACGAGTGA 59.322 41.667 1.63 0.00 44.43 3.41
3350 3762 4.443063 TGTCAATTACACGAAGAACGAGTG 59.557 41.667 0.00 0.00 44.43 3.51
3353 4677 5.224135 TGATGTCAATTACACGAAGAACGA 58.776 37.500 0.00 0.00 42.09 3.85
3380 4704 8.058847 TCCACCAATAAGGCTATTTCAACTAAT 58.941 33.333 0.00 0.00 43.14 1.73
3466 4790 9.003658 CCCTTCAGATTTGTGTATCCATAATAC 57.996 37.037 0.00 0.00 40.67 1.89
3477 4808 4.787551 TGTACAACCCTTCAGATTTGTGT 58.212 39.130 0.00 0.00 34.15 3.72
3598 4930 9.605275 TTGACTCACCATCTCTATAAAGAATTG 57.395 33.333 0.00 0.00 0.00 2.32
3669 5001 1.218316 GAGCCCTGTTCCGGTAGTG 59.782 63.158 0.00 0.00 0.00 2.74
3670 5002 2.348888 CGAGCCCTGTTCCGGTAGT 61.349 63.158 0.00 0.00 0.00 2.73
3671 5003 1.392710 ATCGAGCCCTGTTCCGGTAG 61.393 60.000 0.00 0.00 0.00 3.18
3672 5004 1.380785 ATCGAGCCCTGTTCCGGTA 60.381 57.895 0.00 0.00 0.00 4.02
3673 5005 2.683933 ATCGAGCCCTGTTCCGGT 60.684 61.111 0.00 0.00 0.00 5.28
3674 5006 2.202932 CATCGAGCCCTGTTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
3675 5007 2.892425 GCATCGAGCCCTGTTCCG 60.892 66.667 0.00 0.00 37.23 4.30
3699 5031 3.155167 GGAGTAGGCCGACAGGGG 61.155 72.222 18.90 0.00 38.20 4.79
3700 5032 2.363795 TGGAGTAGGCCGACAGGG 60.364 66.667 18.90 0.00 38.20 4.45
3701 5033 2.427245 CCTGGAGTAGGCCGACAGG 61.427 68.421 18.90 17.25 40.38 4.00
3702 5034 3.211288 CCTGGAGTAGGCCGACAG 58.789 66.667 18.90 12.54 40.38 3.51
3719 5051 2.590007 CCTGGCTGTCGGCATAGC 60.590 66.667 5.89 0.00 45.40 2.97
3720 5052 1.227380 GACCTGGCTGTCGGCATAG 60.227 63.158 5.89 3.19 45.40 2.23
3721 5053 2.731571 GGACCTGGCTGTCGGCATA 61.732 63.158 5.89 0.00 45.40 3.14
3722 5054 4.101448 GGACCTGGCTGTCGGCAT 62.101 66.667 5.89 0.00 45.40 4.40
3724 5056 4.767255 CTGGACCTGGCTGTCGGC 62.767 72.222 0.00 0.00 36.07 5.54
3725 5057 4.087892 CCTGGACCTGGCTGTCGG 62.088 72.222 4.20 0.00 36.07 4.79
3726 5058 4.767255 GCCTGGACCTGGCTGTCG 62.767 72.222 29.91 0.86 43.62 4.35
3727 5059 4.416738 GGCCTGGACCTGGCTGTC 62.417 72.222 33.75 18.79 45.73 3.51
3736 5068 3.376078 TACACCGACGGCCTGGAC 61.376 66.667 15.39 0.00 0.00 4.02
3737 5069 3.376078 GTACACCGACGGCCTGGA 61.376 66.667 15.39 0.00 0.00 3.86
3738 5070 3.229156 TTGTACACCGACGGCCTGG 62.229 63.158 15.39 2.01 0.00 4.45
3739 5071 2.025418 GTTGTACACCGACGGCCTG 61.025 63.158 15.39 8.51 0.00 4.85
3740 5072 2.341176 GTTGTACACCGACGGCCT 59.659 61.111 15.39 0.81 0.00 5.19
3741 5073 2.025418 CTGTTGTACACCGACGGCC 61.025 63.158 15.39 0.00 0.00 6.13
3742 5074 1.280206 GACTGTTGTACACCGACGGC 61.280 60.000 15.39 0.00 37.34 5.68
3743 5075 1.000233 CGACTGTTGTACACCGACGG 61.000 60.000 13.61 13.61 39.44 4.79
3744 5076 1.602877 GCGACTGTTGTACACCGACG 61.603 60.000 0.00 0.51 32.51 5.12
3745 5077 1.280206 GGCGACTGTTGTACACCGAC 61.280 60.000 0.00 0.00 0.00 4.79
3746 5078 1.007038 GGCGACTGTTGTACACCGA 60.007 57.895 0.00 0.00 0.00 4.69
3747 5079 2.369629 CGGCGACTGTTGTACACCG 61.370 63.158 0.00 0.00 32.43 4.94
3748 5080 2.025418 CCGGCGACTGTTGTACACC 61.025 63.158 9.30 0.00 0.00 4.16
3749 5081 2.025418 CCCGGCGACTGTTGTACAC 61.025 63.158 9.30 0.00 0.00 2.90
3750 5082 2.340809 CCCGGCGACTGTTGTACA 59.659 61.111 9.30 0.00 0.00 2.90
3751 5083 2.216750 TAGCCCGGCGACTGTTGTAC 62.217 60.000 9.30 0.00 0.00 2.90
3752 5084 1.324740 ATAGCCCGGCGACTGTTGTA 61.325 55.000 9.30 0.00 0.00 2.41
3753 5085 2.573609 GATAGCCCGGCGACTGTTGT 62.574 60.000 9.30 0.00 0.00 3.32
3754 5086 1.883084 GATAGCCCGGCGACTGTTG 60.883 63.158 9.30 0.00 0.00 3.33
3755 5087 2.499685 GATAGCCCGGCGACTGTT 59.500 61.111 9.30 0.00 0.00 3.16
3756 5088 3.537874 GGATAGCCCGGCGACTGT 61.538 66.667 9.30 3.24 0.00 3.55
3757 5089 4.301027 GGGATAGCCCGGCGACTG 62.301 72.222 9.30 0.00 46.48 3.51
3766 5098 1.301293 GGCATAGCTGGGGATAGCC 59.699 63.158 0.00 0.00 44.76 3.93
3767 5099 1.078848 CGGCATAGCTGGGGATAGC 60.079 63.158 0.00 0.00 44.01 2.97
3768 5100 0.247736 GTCGGCATAGCTGGGGATAG 59.752 60.000 0.00 0.00 35.34 2.08
3769 5101 1.532604 CGTCGGCATAGCTGGGGATA 61.533 60.000 0.00 0.00 35.34 2.59
3770 5102 2.872388 CGTCGGCATAGCTGGGGAT 61.872 63.158 0.00 0.00 35.34 3.85
3771 5103 3.536917 CGTCGGCATAGCTGGGGA 61.537 66.667 0.00 0.00 35.34 4.81
3772 5104 4.609018 CCGTCGGCATAGCTGGGG 62.609 72.222 0.00 0.00 35.34 4.96
3790 5122 3.835790 TTTTCTGTGCCGACGGGGG 62.836 63.158 17.22 0.00 35.78 5.40
3791 5123 2.281208 TTTTCTGTGCCGACGGGG 60.281 61.111 17.22 0.00 39.58 5.73
3792 5124 2.966309 GCTTTTCTGTGCCGACGGG 61.966 63.158 17.22 0.00 0.00 5.28
3793 5125 2.556287 GCTTTTCTGTGCCGACGG 59.444 61.111 10.29 10.29 0.00 4.79
3794 5126 2.556287 GGCTTTTCTGTGCCGACG 59.444 61.111 0.00 0.00 39.71 5.12
3798 5130 2.556287 CGACGGCTTTTCTGTGCC 59.444 61.111 0.00 0.00 45.25 5.01
3799 5131 1.782028 AACCGACGGCTTTTCTGTGC 61.782 55.000 15.39 0.00 33.57 4.57
3800 5132 0.661020 AAACCGACGGCTTTTCTGTG 59.339 50.000 15.39 0.00 33.57 3.66
3801 5133 2.140717 CTAAACCGACGGCTTTTCTGT 58.859 47.619 15.39 0.00 36.89 3.41
3802 5134 1.136057 GCTAAACCGACGGCTTTTCTG 60.136 52.381 15.39 6.23 0.00 3.02
3803 5135 1.154197 GCTAAACCGACGGCTTTTCT 58.846 50.000 15.39 0.00 0.00 2.52
3804 5136 0.167470 GGCTAAACCGACGGCTTTTC 59.833 55.000 15.39 3.35 0.00 2.29
3805 5137 1.239296 GGGCTAAACCGACGGCTTTT 61.239 55.000 15.39 10.72 40.62 2.27
3806 5138 1.673337 GGGCTAAACCGACGGCTTT 60.673 57.895 15.39 15.43 40.62 3.51
3807 5139 2.046604 GGGCTAAACCGACGGCTT 60.047 61.111 15.39 11.25 40.62 4.35
3808 5140 3.310860 CTGGGCTAAACCGACGGCT 62.311 63.158 15.39 0.00 40.62 5.52
3809 5141 2.818274 CTGGGCTAAACCGACGGC 60.818 66.667 15.39 0.00 40.62 5.68
3810 5142 2.818274 GCTGGGCTAAACCGACGG 60.818 66.667 13.61 13.61 40.62 4.79
3811 5143 1.952102 TAGGCTGGGCTAAACCGACG 61.952 60.000 0.00 0.00 40.62 5.12
3812 5144 0.461516 GTAGGCTGGGCTAAACCGAC 60.462 60.000 5.46 0.00 40.62 4.79
3813 5145 1.902556 GTAGGCTGGGCTAAACCGA 59.097 57.895 5.46 0.00 40.62 4.69
3814 5146 1.520787 CGTAGGCTGGGCTAAACCG 60.521 63.158 5.46 2.50 40.62 4.44
3815 5147 1.818363 GCGTAGGCTGGGCTAAACC 60.818 63.158 5.46 0.00 35.83 3.27
3816 5148 3.809423 GCGTAGGCTGGGCTAAAC 58.191 61.111 5.46 0.00 35.83 2.01
3827 5159 3.369385 CGACAACAACTATAGGCGTAGG 58.631 50.000 4.43 0.34 0.00 3.18
3828 5160 3.369385 CCGACAACAACTATAGGCGTAG 58.631 50.000 4.43 0.00 0.00 3.51
3829 5161 2.480073 GCCGACAACAACTATAGGCGTA 60.480 50.000 4.43 0.00 33.43 4.42
3830 5162 1.738030 GCCGACAACAACTATAGGCGT 60.738 52.381 4.43 0.00 33.43 5.68
3831 5163 0.928229 GCCGACAACAACTATAGGCG 59.072 55.000 4.43 0.00 33.43 5.52
3832 5164 2.018542 TGCCGACAACAACTATAGGC 57.981 50.000 4.43 0.00 43.05 3.93
3833 5165 4.506654 GTGTATGCCGACAACAACTATAGG 59.493 45.833 4.43 0.00 0.00 2.57
3834 5166 5.106442 TGTGTATGCCGACAACAACTATAG 58.894 41.667 0.00 0.00 0.00 1.31
3835 5167 5.074584 TGTGTATGCCGACAACAACTATA 57.925 39.130 0.00 0.00 0.00 1.31
3836 5168 3.932710 CTGTGTATGCCGACAACAACTAT 59.067 43.478 0.00 0.00 0.00 2.12
3837 5169 3.322369 CTGTGTATGCCGACAACAACTA 58.678 45.455 0.00 0.00 0.00 2.24
3838 5170 2.143122 CTGTGTATGCCGACAACAACT 58.857 47.619 0.00 0.00 0.00 3.16
3839 5171 1.196808 CCTGTGTATGCCGACAACAAC 59.803 52.381 0.00 0.00 0.00 3.32
3840 5172 1.518325 CCTGTGTATGCCGACAACAA 58.482 50.000 0.00 0.00 0.00 2.83
3841 5173 0.953471 GCCTGTGTATGCCGACAACA 60.953 55.000 0.00 0.00 0.00 3.33
3842 5174 1.644786 GGCCTGTGTATGCCGACAAC 61.645 60.000 0.00 0.00 38.00 3.32
3843 5175 1.376683 GGCCTGTGTATGCCGACAA 60.377 57.895 0.00 0.00 38.00 3.18
3844 5176 2.267642 GGCCTGTGTATGCCGACA 59.732 61.111 0.00 0.00 38.00 4.35
3848 5180 2.890474 CGACGGCCTGTGTATGCC 60.890 66.667 0.00 0.00 44.41 4.40
3849 5181 2.890474 CCGACGGCCTGTGTATGC 60.890 66.667 0.00 0.00 0.00 3.14
3850 5182 2.890474 GCCGACGGCCTGTGTATG 60.890 66.667 28.74 0.00 44.06 2.39
3892 5224 4.124351 TTAGCCGCCCGTCACGAG 62.124 66.667 0.00 0.00 0.00 4.18
3893 5225 4.424566 GTTAGCCGCCCGTCACGA 62.425 66.667 0.00 0.00 0.00 4.35
3917 5249 3.706140 CGCTGTCGGCATAGTTCC 58.294 61.111 4.16 0.00 41.91 3.62
3947 5279 0.386858 CACCCGTATCTATGCCGACG 60.387 60.000 0.00 0.00 35.12 5.12
3948 5280 0.666577 GCACCCGTATCTATGCCGAC 60.667 60.000 0.00 0.00 31.71 4.79
3949 5281 1.663739 GCACCCGTATCTATGCCGA 59.336 57.895 0.00 0.00 31.71 5.54
3950 5282 4.261888 GCACCCGTATCTATGCCG 57.738 61.111 0.00 0.00 31.71 5.69
3952 5284 1.270839 ACATGGCACCCGTATCTATGC 60.271 52.381 0.00 0.00 37.35 3.14
3953 5285 2.037121 TGACATGGCACCCGTATCTATG 59.963 50.000 0.00 0.00 0.00 2.23
3954 5286 2.325484 TGACATGGCACCCGTATCTAT 58.675 47.619 0.00 0.00 0.00 1.98
3955 5287 1.783071 TGACATGGCACCCGTATCTA 58.217 50.000 0.00 0.00 0.00 1.98
3956 5288 1.070758 GATGACATGGCACCCGTATCT 59.929 52.381 1.45 0.00 0.00 1.98
3957 5289 1.512926 GATGACATGGCACCCGTATC 58.487 55.000 1.45 0.00 0.00 2.24
3958 5290 0.249868 CGATGACATGGCACCCGTAT 60.250 55.000 1.45 0.00 0.00 3.06
3959 5291 1.142965 CGATGACATGGCACCCGTA 59.857 57.895 1.45 0.00 0.00 4.02
3960 5292 1.971505 ATCGATGACATGGCACCCGT 61.972 55.000 20.39 8.92 0.00 5.28
3961 5293 1.224069 GATCGATGACATGGCACCCG 61.224 60.000 16.57 16.57 0.00 5.28
3962 5294 0.886490 GGATCGATGACATGGCACCC 60.886 60.000 1.45 0.00 0.00 4.61
3963 5295 1.224069 CGGATCGATGACATGGCACC 61.224 60.000 1.45 0.00 0.00 5.01
3964 5296 0.249447 TCGGATCGATGACATGGCAC 60.249 55.000 1.45 0.00 0.00 5.01
3965 5297 0.463620 TTCGGATCGATGACATGGCA 59.536 50.000 2.18 2.18 35.23 4.92
3966 5298 1.143305 CTTCGGATCGATGACATGGC 58.857 55.000 0.54 0.00 35.23 4.40
3967 5299 2.670479 CTCTTCGGATCGATGACATGG 58.330 52.381 0.54 0.00 35.66 3.66
3968 5300 2.057316 GCTCTTCGGATCGATGACATG 58.943 52.381 0.54 0.00 35.66 3.21
3969 5301 1.683385 TGCTCTTCGGATCGATGACAT 59.317 47.619 0.54 0.00 35.66 3.06
3970 5302 1.102978 TGCTCTTCGGATCGATGACA 58.897 50.000 0.54 4.14 35.66 3.58
3971 5303 1.482278 GTGCTCTTCGGATCGATGAC 58.518 55.000 0.54 0.00 35.66 3.06
3972 5304 0.385751 GGTGCTCTTCGGATCGATGA 59.614 55.000 0.54 0.00 37.63 2.92
3973 5305 0.936764 CGGTGCTCTTCGGATCGATG 60.937 60.000 0.54 0.00 35.23 3.84
3974 5306 1.101635 TCGGTGCTCTTCGGATCGAT 61.102 55.000 0.00 0.00 35.23 3.59
3975 5307 1.747745 TCGGTGCTCTTCGGATCGA 60.748 57.895 0.00 0.00 0.00 3.59
3976 5308 1.586564 GTCGGTGCTCTTCGGATCG 60.587 63.158 0.00 0.00 0.00 3.69
3977 5309 1.227002 GGTCGGTGCTCTTCGGATC 60.227 63.158 0.00 0.00 0.00 3.36
3978 5310 1.949847 CTGGTCGGTGCTCTTCGGAT 61.950 60.000 0.00 0.00 0.00 4.18
3979 5311 2.599281 TGGTCGGTGCTCTTCGGA 60.599 61.111 0.00 0.00 0.00 4.55
3980 5312 2.125912 CTGGTCGGTGCTCTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
3981 5313 2.125912 CCTGGTCGGTGCTCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
3982 5314 1.079750 GTCCTGGTCGGTGCTCTTC 60.080 63.158 0.00 0.00 0.00 2.87
3983 5315 2.584391 GGTCCTGGTCGGTGCTCTT 61.584 63.158 0.00 0.00 0.00 2.85
3984 5316 2.997897 GGTCCTGGTCGGTGCTCT 60.998 66.667 0.00 0.00 0.00 4.09
3985 5317 4.083862 GGGTCCTGGTCGGTGCTC 62.084 72.222 0.00 0.00 0.00 4.26
3986 5318 2.531483 ATAGGGTCCTGGTCGGTGCT 62.531 60.000 0.00 0.00 0.00 4.40
3987 5319 2.064581 ATAGGGTCCTGGTCGGTGC 61.065 63.158 0.00 0.00 0.00 5.01
3988 5320 1.823295 CATAGGGTCCTGGTCGGTG 59.177 63.158 0.00 0.00 0.00 4.94
3989 5321 2.064581 GCATAGGGTCCTGGTCGGT 61.065 63.158 0.00 0.00 0.00 4.69
3990 5322 2.808206 GGCATAGGGTCCTGGTCGG 61.808 68.421 0.00 0.00 0.00 4.79
3991 5323 2.822399 GGCATAGGGTCCTGGTCG 59.178 66.667 0.00 0.00 0.00 4.79
3992 5324 2.029307 GACGGCATAGGGTCCTGGTC 62.029 65.000 0.00 0.00 0.00 4.02
3993 5325 2.040606 ACGGCATAGGGTCCTGGT 59.959 61.111 0.00 0.00 0.00 4.00
3994 5326 2.822399 GACGGCATAGGGTCCTGG 59.178 66.667 0.00 0.00 0.00 4.45
3995 5327 2.417516 CGACGGCATAGGGTCCTG 59.582 66.667 0.00 0.00 0.00 3.86
3996 5328 2.838225 CCGACGGCATAGGGTCCT 60.838 66.667 0.00 0.00 0.00 3.85
4007 5339 3.630204 GCACAGATATGCCGACGG 58.370 61.111 10.29 10.29 39.86 4.79
4013 5345 1.215655 GACCGTCGGCACAGATATGC 61.216 60.000 12.28 0.00 45.34 3.14
4014 5346 0.385751 AGACCGTCGGCACAGATATG 59.614 55.000 12.28 0.00 0.00 1.78
4015 5347 0.385751 CAGACCGTCGGCACAGATAT 59.614 55.000 12.28 0.00 0.00 1.63
4016 5348 0.678684 TCAGACCGTCGGCACAGATA 60.679 55.000 12.28 0.00 0.00 1.98
4017 5349 1.977009 TCAGACCGTCGGCACAGAT 60.977 57.895 12.28 0.00 0.00 2.90
4018 5350 2.596338 TCAGACCGTCGGCACAGA 60.596 61.111 12.28 5.64 0.00 3.41
4019 5351 2.430921 GTCAGACCGTCGGCACAG 60.431 66.667 12.28 3.14 0.00 3.66
4020 5352 2.693250 CTTGTCAGACCGTCGGCACA 62.693 60.000 12.28 6.52 0.00 4.57
4021 5353 2.022129 CTTGTCAGACCGTCGGCAC 61.022 63.158 12.28 6.04 0.00 5.01
4022 5354 2.197605 TCTTGTCAGACCGTCGGCA 61.198 57.895 12.28 0.00 0.00 5.69
4023 5355 1.733399 GTCTTGTCAGACCGTCGGC 60.733 63.158 12.28 4.24 43.50 5.54
4024 5356 4.554163 GTCTTGTCAGACCGTCGG 57.446 61.111 10.48 10.48 43.50 4.79
4031 5363 1.197036 CGTCAGCGTAGTCTTGTCAGA 59.803 52.381 0.00 0.00 0.00 3.27
4032 5364 1.607713 CGTCAGCGTAGTCTTGTCAG 58.392 55.000 0.00 0.00 0.00 3.51
4033 5365 3.767287 CGTCAGCGTAGTCTTGTCA 57.233 52.632 0.00 0.00 0.00 3.58
4051 5383 2.025727 CCCGTCGGCGTAGATGAC 59.974 66.667 9.28 0.00 36.15 3.06
4084 5416 0.850856 CGTAAATCTAAGCGGACGGC 59.149 55.000 0.00 0.00 44.05 5.68
4085 5417 0.850856 GCGTAAATCTAAGCGGACGG 59.149 55.000 0.00 0.00 0.00 4.79
4086 5418 0.850856 GGCGTAAATCTAAGCGGACG 59.149 55.000 0.00 0.00 33.75 4.79
4087 5419 0.850856 CGGCGTAAATCTAAGCGGAC 59.149 55.000 0.00 0.00 35.71 4.79
4088 5420 0.740149 TCGGCGTAAATCTAAGCGGA 59.260 50.000 6.85 0.00 38.74 5.54
4089 5421 0.850856 GTCGGCGTAAATCTAAGCGG 59.149 55.000 6.85 0.00 33.75 5.52
4090 5422 0.497265 CGTCGGCGTAAATCTAAGCG 59.503 55.000 6.85 0.00 33.75 4.68
4091 5423 0.850856 CCGTCGGCGTAAATCTAAGC 59.149 55.000 9.28 0.00 36.15 3.09
4092 5424 1.066002 TCCCGTCGGCGTAAATCTAAG 59.934 52.381 9.28 0.00 36.15 2.18
4093 5425 1.102154 TCCCGTCGGCGTAAATCTAA 58.898 50.000 9.28 0.00 36.15 2.10
4094 5426 1.066002 CTTCCCGTCGGCGTAAATCTA 59.934 52.381 9.28 0.00 36.15 1.98
4095 5427 0.179119 CTTCCCGTCGGCGTAAATCT 60.179 55.000 9.28 0.00 36.15 2.40
4096 5428 0.179129 TCTTCCCGTCGGCGTAAATC 60.179 55.000 9.28 0.00 36.15 2.17
4097 5429 0.247185 TTCTTCCCGTCGGCGTAAAT 59.753 50.000 9.28 0.00 36.15 1.40
4098 5430 0.388907 CTTCTTCCCGTCGGCGTAAA 60.389 55.000 9.28 0.49 36.15 2.01
4099 5431 1.213537 CTTCTTCCCGTCGGCGTAA 59.786 57.895 9.28 0.87 36.15 3.18
4100 5432 2.879907 CTTCTTCCCGTCGGCGTA 59.120 61.111 9.28 0.00 36.15 4.42
4101 5433 4.736896 GCTTCTTCCCGTCGGCGT 62.737 66.667 9.28 0.00 36.15 5.68
4103 5435 2.029307 ATAGGCTTCTTCCCGTCGGC 62.029 60.000 5.50 0.00 0.00 5.54
4104 5436 0.249489 CATAGGCTTCTTCCCGTCGG 60.249 60.000 3.60 3.60 0.00 4.79
4105 5437 0.876342 GCATAGGCTTCTTCCCGTCG 60.876 60.000 0.00 0.00 36.96 5.12
4106 5438 0.533085 GGCATAGGCTTCTTCCCGTC 60.533 60.000 0.00 0.00 40.87 4.79
4107 5439 1.527370 GGCATAGGCTTCTTCCCGT 59.473 57.895 0.00 0.00 40.87 5.28
4108 5440 1.595382 CGGCATAGGCTTCTTCCCG 60.595 63.158 0.00 0.00 40.87 5.14
4109 5441 0.533085 GTCGGCATAGGCTTCTTCCC 60.533 60.000 0.00 0.00 40.87 3.97
4110 5442 0.876342 CGTCGGCATAGGCTTCTTCC 60.876 60.000 0.00 0.00 40.87 3.46
4111 5443 0.876342 CCGTCGGCATAGGCTTCTTC 60.876 60.000 0.00 0.00 40.87 2.87
4112 5444 1.144057 CCGTCGGCATAGGCTTCTT 59.856 57.895 0.00 0.00 40.87 2.52
4113 5445 2.815308 CCGTCGGCATAGGCTTCT 59.185 61.111 0.00 0.00 40.87 2.85
4152 5484 1.216977 TGGCACTACCGGATCAACG 59.783 57.895 9.46 0.00 43.94 4.10
4159 5491 2.203070 GCATCCTGGCACTACCGG 60.203 66.667 0.00 0.00 45.52 5.28
4160 5492 2.584064 TGCATCCTGGCACTACCG 59.416 61.111 0.00 0.00 43.94 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.