Multiple sequence alignment - TraesCS5D01G541200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G541200 chr5D 100.000 3412 0 0 1 3412 552043532 552040121 0.000000e+00 6301.0
1 TraesCS5D01G541200 chr5D 94.290 2154 95 7 992 3123 551447698 551449845 0.000000e+00 3271.0
2 TraesCS5D01G541200 chr5D 84.091 1144 150 22 1023 2154 552422769 552421646 0.000000e+00 1075.0
3 TraesCS5D01G541200 chr5D 82.403 1182 154 26 994 2165 552458386 552457249 0.000000e+00 981.0
4 TraesCS5D01G541200 chr5D 88.077 671 57 9 2144 2814 552456809 552456162 0.000000e+00 774.0
5 TraesCS5D01G541200 chr5D 74.184 1286 235 54 1023 2284 543503688 543502476 2.420000e-121 446.0
6 TraesCS5D01G541200 chr5D 79.232 573 107 10 1023 1588 551611499 551612066 4.130000e-104 388.0
7 TraesCS5D01G541200 chr5D 83.120 391 39 11 490 879 551447110 551447474 7.060000e-87 331.0
8 TraesCS5D01G541200 chr5D 77.309 498 88 16 1023 1509 551119878 551120361 1.560000e-68 270.0
9 TraesCS5D01G541200 chr5D 89.947 189 6 5 228 406 551446711 551446896 7.360000e-57 231.0
10 TraesCS5D01G541200 chr5D 87.065 201 9 5 218 410 8287123 8287314 9.590000e-51 211.0
11 TraesCS5D01G541200 chr5D 86.503 163 22 0 2894 3056 359517654 359517492 2.710000e-41 180.0
12 TraesCS5D01G541200 chr5D 80.841 214 41 0 1368 1581 551081983 551082196 5.860000e-38 169.0
13 TraesCS5D01G541200 chr5D 100.000 29 0 0 3115 3143 359517443 359517415 2.000000e-03 54.7
14 TraesCS5D01G541200 chr5B 94.311 1828 97 2 994 2814 700237599 700235772 0.000000e+00 2793.0
15 TraesCS5D01G541200 chr5B 84.713 1184 153 14 990 2165 698256549 698257712 0.000000e+00 1158.0
16 TraesCS5D01G541200 chr5B 95.118 676 28 1 2075 2745 699945366 699946041 0.000000e+00 1061.0
17 TraesCS5D01G541200 chr5B 77.382 1459 284 29 1017 2454 685499497 685500930 0.000000e+00 824.0
18 TraesCS5D01G541200 chr5B 87.481 671 58 10 2144 2808 698258136 698258786 0.000000e+00 750.0
19 TraesCS5D01G541200 chr5B 88.679 424 11 13 131 540 699944937 699945337 1.840000e-132 483.0
20 TraesCS5D01G541200 chr5B 94.054 185 10 1 1 184 700245020 700244836 2.590000e-71 279.0
21 TraesCS5D01G541200 chr5B 94.054 185 10 1 1 184 700269008 700268824 2.590000e-71 279.0
22 TraesCS5D01G541200 chr5B 77.223 461 83 11 1761 2211 703540214 703540662 2.030000e-62 250.0
23 TraesCS5D01G541200 chr5B 91.351 185 9 3 226 406 700242534 700242353 2.630000e-61 246.0
24 TraesCS5D01G541200 chr5B 80.435 322 56 7 1023 1339 699354085 699354404 4.400000e-59 239.0
25 TraesCS5D01G541200 chr5B 95.270 148 6 1 1 147 699944753 699944900 2.050000e-57 233.0
26 TraesCS5D01G541200 chr5B 94.558 147 7 1 3183 3329 700235347 700235202 3.430000e-55 226.0
27 TraesCS5D01G541200 chr5B 85.268 224 13 8 2827 3030 700235708 700235485 2.670000e-51 213.0
28 TraesCS5D01G541200 chr5B 79.012 324 52 10 1023 1341 703488498 703488810 1.240000e-49 207.0
29 TraesCS5D01G541200 chr5B 85.876 177 4 4 234 406 700238248 700238089 5.860000e-38 169.0
30 TraesCS5D01G541200 chr5B 82.822 163 28 0 2894 3056 656439105 656438943 2.740000e-31 147.0
31 TraesCS5D01G541200 chr5B 82.781 151 26 0 2948 3098 698259076 698259226 5.940000e-28 135.0
32 TraesCS5D01G541200 chr5B 95.238 42 1 1 2092 2133 699945335 699945375 7.900000e-07 65.8
33 TraesCS5D01G541200 chr4A 93.215 1857 79 11 1257 3087 616674841 616673006 0.000000e+00 2687.0
34 TraesCS5D01G541200 chr4A 74.828 1601 311 56 1023 2571 616618680 616617120 1.030000e-179 640.0
35 TraesCS5D01G541200 chr4A 74.709 1289 249 57 1023 2264 616238360 616237102 1.410000e-138 503.0
36 TraesCS5D01G541200 chr4A 75.342 1168 224 37 1023 2173 616876747 616875627 1.410000e-138 503.0
37 TraesCS5D01G541200 chr4A 72.689 1677 349 67 994 2621 624452643 624451027 3.100000e-125 459.0
38 TraesCS5D01G541200 chr4A 76.744 602 108 15 1866 2454 616871177 616870595 1.190000e-79 307.0
39 TraesCS5D01G541200 chr4A 77.362 508 94 20 1023 1515 616885942 616885441 7.210000e-72 281.0
40 TraesCS5D01G541200 chr4A 91.444 187 15 1 1 186 616676922 616676736 4.370000e-64 255.0
41 TraesCS5D01G541200 chr4A 97.561 123 3 0 1033 1155 616674962 616674840 9.590000e-51 211.0
42 TraesCS5D01G541200 chr4A 87.166 187 7 4 226 407 616675450 616675276 2.690000e-46 196.0
43 TraesCS5D01G541200 chr4A 90.769 65 4 1 2727 2791 616869305 616869243 6.070000e-13 86.1
44 TraesCS5D01G541200 chr4B 81.308 428 66 12 991 1413 581073591 581073173 5.460000e-88 335.0
45 TraesCS5D01G541200 chr4B 85.276 163 24 0 2894 3056 1582062 1581900 5.860000e-38 169.0
46 TraesCS5D01G541200 chr4B 84.337 166 26 0 2891 3056 498827811 498827976 2.720000e-36 163.0
47 TraesCS5D01G541200 chr4B 84.337 166 26 0 2891 3056 613944749 613944914 2.720000e-36 163.0
48 TraesCS5D01G541200 chr4B 82.530 166 28 1 2891 3056 30803754 30803918 9.870000e-31 145.0
49 TraesCS5D01G541200 chr4B 97.143 35 1 0 1578 1612 663402740 663402706 3.680000e-05 60.2
50 TraesCS5D01G541200 chr4B 97.143 35 1 0 1578 1612 663403663 663403697 3.680000e-05 60.2
51 TraesCS5D01G541200 chr4B 97.143 35 1 0 1578 1612 663406761 663406727 3.680000e-05 60.2
52 TraesCS5D01G541200 chr4B 97.143 35 1 0 1578 1612 663407682 663407716 3.680000e-05 60.2
53 TraesCS5D01G541200 chr4B 100.000 29 0 0 3115 3143 1581851 1581823 2.000000e-03 54.7
54 TraesCS5D01G541200 chr4B 100.000 29 0 0 3115 3143 613944963 613944991 2.000000e-03 54.7
55 TraesCS5D01G541200 chrUn 94.054 185 10 1 1 184 368793661 368793477 2.590000e-71 279.0
56 TraesCS5D01G541200 chrUn 94.054 185 10 1 1 184 455426903 455427087 2.590000e-71 279.0
57 TraesCS5D01G541200 chrUn 94.054 185 10 1 1 184 456663299 456663115 2.590000e-71 279.0
58 TraesCS5D01G541200 chrUn 87.065 201 9 5 218 410 303407834 303408025 9.590000e-51 211.0
59 TraesCS5D01G541200 chr1A 76.876 493 98 10 1023 1509 569738608 569739090 7.260000e-67 265.0
60 TraesCS5D01G541200 chr7D 88.060 201 7 4 218 410 173302229 173302038 4.430000e-54 222.0
61 TraesCS5D01G541200 chr6D 88.060 201 7 4 218 410 417302264 417302073 4.430000e-54 222.0
62 TraesCS5D01G541200 chr6D 85.276 163 24 0 2894 3056 105303831 105303669 5.860000e-38 169.0
63 TraesCS5D01G541200 chr6D 83.140 172 27 1 2894 3065 204628223 204628054 4.560000e-34 156.0
64 TraesCS5D01G541200 chr6D 90.083 121 2 2 298 410 35010484 35010602 7.630000e-32 148.0
65 TraesCS5D01G541200 chr3D 87.562 201 8 4 218 410 2168967 2169158 2.060000e-52 217.0
66 TraesCS5D01G541200 chr3D 87.562 201 8 4 218 410 370811078 370810887 2.060000e-52 217.0
67 TraesCS5D01G541200 chr7A 86.772 189 16 5 2 184 318784212 318784027 5.770000e-48 202.0
68 TraesCS5D01G541200 chr7B 86.316 190 18 3 2 184 483787118 483786930 2.080000e-47 200.0
69 TraesCS5D01G541200 chr2D 87.742 155 18 1 1023 1177 28956981 28957134 2.710000e-41 180.0
70 TraesCS5D01G541200 chr3B 84.337 166 26 0 2891 3056 821376037 821376202 2.720000e-36 163.0
71 TraesCS5D01G541200 chr6B 84.049 163 26 0 2894 3056 212098935 212098773 1.270000e-34 158.0
72 TraesCS5D01G541200 chr6B 74.576 236 58 2 1850 2085 674717887 674717654 6.020000e-18 102.0
73 TraesCS5D01G541200 chr1B 83.133 166 28 0 2891 3056 78191424 78191589 5.900000e-33 152.0
74 TraesCS5D01G541200 chr4D 90.083 121 2 2 298 410 66142062 66141944 7.630000e-32 148.0
75 TraesCS5D01G541200 chr4D 90.083 121 2 2 298 410 300144757 300144875 7.630000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G541200 chr5D 552040121 552043532 3411 True 6301.000000 6301 100.000000 1 3412 1 chr5D.!!$R2 3411
1 TraesCS5D01G541200 chr5D 551446711 551449845 3134 False 1277.666667 3271 89.119000 228 3123 3 chr5D.!!$F5 2895
2 TraesCS5D01G541200 chr5D 552421646 552422769 1123 True 1075.000000 1075 84.091000 1023 2154 1 chr5D.!!$R3 1131
3 TraesCS5D01G541200 chr5D 552456162 552458386 2224 True 877.500000 981 85.240000 994 2814 2 chr5D.!!$R5 1820
4 TraesCS5D01G541200 chr5D 543502476 543503688 1212 True 446.000000 446 74.184000 1023 2284 1 chr5D.!!$R1 1261
5 TraesCS5D01G541200 chr5D 551611499 551612066 567 False 388.000000 388 79.232000 1023 1588 1 chr5D.!!$F4 565
6 TraesCS5D01G541200 chr5B 700235202 700238248 3046 True 850.250000 2793 90.003250 234 3329 4 chr5B.!!$R3 3095
7 TraesCS5D01G541200 chr5B 685499497 685500930 1433 False 824.000000 824 77.382000 1017 2454 1 chr5B.!!$F1 1437
8 TraesCS5D01G541200 chr5B 698256549 698259226 2677 False 681.000000 1158 84.991667 990 3098 3 chr5B.!!$F5 2108
9 TraesCS5D01G541200 chr5B 699944753 699946041 1288 False 460.700000 1061 93.576250 1 2745 4 chr5B.!!$F6 2744
10 TraesCS5D01G541200 chr5B 700242353 700245020 2667 True 262.500000 279 92.702500 1 406 2 chr5B.!!$R4 405
11 TraesCS5D01G541200 chr4A 616673006 616676922 3916 True 837.250000 2687 92.346500 1 3087 4 chr4A.!!$R6 3086
12 TraesCS5D01G541200 chr4A 616617120 616618680 1560 True 640.000000 640 74.828000 1023 2571 1 chr4A.!!$R2 1548
13 TraesCS5D01G541200 chr4A 616237102 616238360 1258 True 503.000000 503 74.709000 1023 2264 1 chr4A.!!$R1 1241
14 TraesCS5D01G541200 chr4A 616875627 616876747 1120 True 503.000000 503 75.342000 1023 2173 1 chr4A.!!$R3 1150
15 TraesCS5D01G541200 chr4A 624451027 624452643 1616 True 459.000000 459 72.689000 994 2621 1 chr4A.!!$R5 1627
16 TraesCS5D01G541200 chr4A 616885441 616885942 501 True 281.000000 281 77.362000 1023 1515 1 chr4A.!!$R4 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 3337 0.179070 GGGGAATCAGGAGAGAACGC 60.179 60.0 0.00 0.00 0.00 4.84 F
839 3383 0.953960 CCTTTTCAGCGGGCTAACGT 60.954 55.0 0.00 0.00 35.98 3.99 F
1755 4492 0.529337 ACTGCTTCGATGATCGCCTG 60.529 55.0 10.45 7.48 40.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 4475 0.673985 CCTACCAGGCGATCATCGAA 59.326 55.000 12.38 0.0 43.74 3.71 R
1800 4537 2.620115 CTCCACAAGCGGCATATCAATT 59.380 45.455 1.45 0.0 0.00 2.32 R
3278 6826 0.163788 CCAGCGACAACAACGATCAC 59.836 55.000 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
410 2787 6.598850 TGCTGCAATAGTCTGAATCATGTTAA 59.401 34.615 0.00 0.00 0.00 2.01
468 2849 0.928229 GGCCGCTACTATGTGTTTCG 59.072 55.000 0.00 0.00 0.00 3.46
551 3085 0.394352 CAATTACTCCTTGGCCGCCT 60.394 55.000 11.61 0.00 0.00 5.52
617 3151 0.252197 GTATGGTCGTGGCCTTCCTT 59.748 55.000 3.32 2.31 0.00 3.36
631 3165 3.114616 CCTTGACGGCGCACAGAG 61.115 66.667 10.83 8.07 0.00 3.35
649 3183 4.544689 CGCTCTCCGGTCTCTGCG 62.545 72.222 0.00 8.45 37.57 5.18
671 3205 3.069980 GCTGCTCCGTCATCGTCCT 62.070 63.158 0.00 0.00 35.01 3.85
674 3208 2.716244 CTCCGTCATCGTCCTCCG 59.284 66.667 0.00 0.00 38.13 4.63
695 3229 2.186125 CATCTGCAGCAGCCTCGA 59.814 61.111 18.43 0.00 41.13 4.04
706 3240 3.474570 GCCTCGACCATGCCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
707 3241 2.503061 CCTCGACCATGCCCTCTG 59.497 66.667 0.00 0.00 0.00 3.35
714 3248 0.990282 ACCATGCCCTCTGCCATACT 60.990 55.000 0.00 0.00 40.16 2.12
746 3280 0.179108 GTCCCTATGTGTCTCGTGCC 60.179 60.000 0.00 0.00 0.00 5.01
770 3313 2.159142 CGCCGTCATAGAGTTAGGGTTT 60.159 50.000 0.00 0.00 0.00 3.27
792 3335 1.210722 GGTGGGGAATCAGGAGAGAAC 59.789 57.143 0.00 0.00 0.00 3.01
794 3337 0.179070 GGGGAATCAGGAGAGAACGC 60.179 60.000 0.00 0.00 0.00 4.84
807 3351 3.112126 GAACGCATGGGCCACATCG 62.112 63.158 9.28 15.38 37.84 3.84
821 3365 3.121030 ATCGCACACGCTTCTGCC 61.121 61.111 0.00 0.00 39.84 4.85
839 3383 0.953960 CCTTTTCAGCGGGCTAACGT 60.954 55.000 0.00 0.00 35.98 3.99
850 3394 1.211212 GGGCTAACGTGGGGTAGAAAT 59.789 52.381 0.00 0.00 0.00 2.17
872 3416 8.659925 AAATGACTTTTCATGTTGCACATAAA 57.340 26.923 0.00 0.00 42.00 1.40
892 3464 7.498570 ACATAAAGGTGTTCGTGGTTAAAACTA 59.501 33.333 0.00 0.00 0.00 2.24
896 3468 4.033932 GGTGTTCGTGGTTAAAACTAACGT 59.966 41.667 15.83 0.00 38.83 3.99
900 3472 7.850492 GTGTTCGTGGTTAAAACTAACGTAAAT 59.150 33.333 15.83 0.00 38.83 1.40
949 3521 6.648879 TCAGTGTTAAAAGGGGAAGAAATG 57.351 37.500 0.00 0.00 0.00 2.32
952 3525 7.780745 TCAGTGTTAAAAGGGGAAGAAATGTTA 59.219 33.333 0.00 0.00 0.00 2.41
961 3560 7.091533 AGGGGAAGAAATGTTAAGAAAGAGA 57.908 36.000 0.00 0.00 0.00 3.10
964 3563 7.094592 GGGGAAGAAATGTTAAGAAAGAGACAG 60.095 40.741 0.00 0.00 0.00 3.51
979 3578 9.707957 AGAAAGAGACAGATAAGGAATTCTCTA 57.292 33.333 5.23 0.00 39.09 2.43
992 3591 8.760980 AAGGAATTCTCTATAGATCTATCCCG 57.239 38.462 18.59 8.97 0.00 5.14
1184 3852 3.805891 GAGCTCCTCCCATGCTCGC 62.806 68.421 0.87 0.00 42.70 5.03
1470 4180 4.731612 CTCTGCGCTGCGAGTGGT 62.732 66.667 28.07 0.00 0.00 4.16
1613 4343 2.482864 CAACCCCATTTTGTTGAGCAC 58.517 47.619 0.00 0.00 43.50 4.40
1699 4432 1.756950 ATCCACGAAGCGCCTCCTA 60.757 57.895 2.29 0.00 0.00 2.94
1741 4475 2.357009 CACTTCAAGCTTTGTGACTGCT 59.643 45.455 15.10 0.00 38.87 4.24
1755 4492 0.529337 ACTGCTTCGATGATCGCCTG 60.529 55.000 10.45 7.48 40.21 4.85
1897 4649 0.251121 TGCACATGTGGGTGGGTTAG 60.251 55.000 26.55 0.00 39.19 2.34
1973 4725 7.261325 ACTCAGTGTACAGTCATCAATATCAC 58.739 38.462 0.00 0.00 0.00 3.06
2119 4874 4.714308 AGTGGAAGAAAGTATGGGAGAGAG 59.286 45.833 0.00 0.00 0.00 3.20
2121 4876 5.187967 GTGGAAGAAAGTATGGGAGAGAGAA 59.812 44.000 0.00 0.00 0.00 2.87
2140 4913 5.884792 AGAGAAAAGCTTTCATCCCATACAG 59.115 40.000 13.10 0.00 0.00 2.74
2170 5454 6.908825 TCTACAATTCACAAGGTATGTTTGC 58.091 36.000 0.00 0.00 41.46 3.68
2329 5625 3.251245 TGCCGTGTGGTTACAACTAATTG 59.749 43.478 0.00 0.00 38.82 2.32
2330 5626 3.499157 GCCGTGTGGTTACAACTAATTGA 59.501 43.478 0.00 0.00 38.82 2.57
2449 5750 5.336690 GGTGCATTAAGAATGTGTGGTTGAT 60.337 40.000 0.00 0.00 41.01 2.57
2713 6027 7.467557 TTTACTTGAAAAAGCATTTGCAGAG 57.532 32.000 5.20 0.32 45.16 3.35
2848 6214 0.540923 TTTTGCACCTTGGCTTGCTT 59.459 45.000 0.00 0.00 39.62 3.91
2924 6428 3.861840 TGTTGCTGAAGAGTATAGCACC 58.138 45.455 0.00 0.00 46.10 5.01
2946 6450 4.321601 CCCAAACTGGATCTCGAGCTATAG 60.322 50.000 7.81 6.32 40.96 1.31
3063 6596 4.143200 TGTTCGTTATTCGTTGTGCATCTC 60.143 41.667 0.00 0.00 40.80 2.75
3123 6656 2.488153 GGAGCTAATGTGACAACCAACC 59.512 50.000 0.00 0.00 0.00 3.77
3124 6657 3.412386 GAGCTAATGTGACAACCAACCT 58.588 45.455 0.00 0.00 0.00 3.50
3125 6658 3.412386 AGCTAATGTGACAACCAACCTC 58.588 45.455 0.00 0.00 0.00 3.85
3126 6659 3.073062 AGCTAATGTGACAACCAACCTCT 59.927 43.478 0.00 0.00 0.00 3.69
3127 6660 3.189287 GCTAATGTGACAACCAACCTCTG 59.811 47.826 0.00 0.00 0.00 3.35
3128 6661 3.297134 AATGTGACAACCAACCTCTGT 57.703 42.857 0.00 0.00 0.00 3.41
3129 6662 2.799126 TGTGACAACCAACCTCTGTT 57.201 45.000 0.00 0.00 34.14 3.16
3130 6663 3.080300 TGTGACAACCAACCTCTGTTT 57.920 42.857 0.00 0.00 30.42 2.83
3131 6664 3.013921 TGTGACAACCAACCTCTGTTTC 58.986 45.455 0.00 0.00 30.42 2.78
3132 6665 2.357952 GTGACAACCAACCTCTGTTTCC 59.642 50.000 0.00 0.00 30.42 3.13
3133 6666 1.954382 GACAACCAACCTCTGTTTCCC 59.046 52.381 0.00 0.00 30.42 3.97
3134 6667 1.569072 ACAACCAACCTCTGTTTCCCT 59.431 47.619 0.00 0.00 30.42 4.20
3135 6668 1.956477 CAACCAACCTCTGTTTCCCTG 59.044 52.381 0.00 0.00 30.42 4.45
3136 6669 1.518367 ACCAACCTCTGTTTCCCTGA 58.482 50.000 0.00 0.00 30.42 3.86
3137 6670 2.065799 ACCAACCTCTGTTTCCCTGAT 58.934 47.619 0.00 0.00 30.42 2.90
3138 6671 2.224867 ACCAACCTCTGTTTCCCTGATG 60.225 50.000 0.00 0.00 30.42 3.07
3139 6672 1.815003 CAACCTCTGTTTCCCTGATGC 59.185 52.381 0.00 0.00 30.42 3.91
3140 6673 1.366319 ACCTCTGTTTCCCTGATGCT 58.634 50.000 0.00 0.00 0.00 3.79
3141 6674 1.707427 ACCTCTGTTTCCCTGATGCTT 59.293 47.619 0.00 0.00 0.00 3.91
3142 6675 2.290577 ACCTCTGTTTCCCTGATGCTTC 60.291 50.000 0.00 0.00 0.00 3.86
3143 6676 2.363683 CTCTGTTTCCCTGATGCTTCC 58.636 52.381 0.00 0.00 0.00 3.46
3144 6677 1.988107 TCTGTTTCCCTGATGCTTCCT 59.012 47.619 0.00 0.00 0.00 3.36
3145 6678 2.089980 CTGTTTCCCTGATGCTTCCTG 58.910 52.381 0.00 0.00 0.00 3.86
3146 6679 1.704628 TGTTTCCCTGATGCTTCCTGA 59.295 47.619 0.00 0.00 0.00 3.86
3147 6680 2.108075 TGTTTCCCTGATGCTTCCTGAA 59.892 45.455 0.00 0.00 0.00 3.02
3148 6681 2.751806 GTTTCCCTGATGCTTCCTGAAG 59.248 50.000 2.48 2.48 41.24 3.02
3149 6682 1.956869 TCCCTGATGCTTCCTGAAGA 58.043 50.000 11.00 0.00 40.79 2.87
3150 6683 2.269023 TCCCTGATGCTTCCTGAAGAA 58.731 47.619 11.00 0.05 40.79 2.52
3151 6684 2.644299 TCCCTGATGCTTCCTGAAGAAA 59.356 45.455 11.00 0.00 40.79 2.52
3152 6685 3.015327 CCCTGATGCTTCCTGAAGAAAG 58.985 50.000 11.00 0.00 40.79 2.62
3153 6686 3.560882 CCCTGATGCTTCCTGAAGAAAGT 60.561 47.826 11.00 0.00 40.79 2.66
3154 6687 4.323792 CCCTGATGCTTCCTGAAGAAAGTA 60.324 45.833 11.00 0.00 40.79 2.24
3155 6688 4.874966 CCTGATGCTTCCTGAAGAAAGTAG 59.125 45.833 11.00 1.33 40.79 2.57
3156 6689 5.486526 CTGATGCTTCCTGAAGAAAGTAGT 58.513 41.667 11.00 0.00 40.79 2.73
3157 6690 6.351371 CCTGATGCTTCCTGAAGAAAGTAGTA 60.351 42.308 11.00 0.00 40.79 1.82
3158 6691 6.634805 TGATGCTTCCTGAAGAAAGTAGTAG 58.365 40.000 11.00 0.00 40.79 2.57
3159 6692 6.211584 TGATGCTTCCTGAAGAAAGTAGTAGT 59.788 38.462 11.00 0.00 40.79 2.73
3160 6693 7.396339 TGATGCTTCCTGAAGAAAGTAGTAGTA 59.604 37.037 11.00 0.00 40.79 1.82
3161 6694 7.719871 TGCTTCCTGAAGAAAGTAGTAGTAT 57.280 36.000 11.00 0.00 40.79 2.12
3197 6745 4.651503 ACAGAGTTTCAACCTCTTCTCAGA 59.348 41.667 0.00 0.00 0.00 3.27
3239 6787 1.003442 TGCCTCCCTCTACCTGCAT 59.997 57.895 0.00 0.00 0.00 3.96
3241 6789 1.341156 GCCTCCCTCTACCTGCATGT 61.341 60.000 0.00 0.00 0.00 3.21
3256 6804 5.658634 ACCTGCATGTAACTATCTCTCAAGA 59.341 40.000 0.00 0.00 35.54 3.02
3278 6826 3.997021 ACTGAAGATCTGTAAACGGCAAG 59.003 43.478 0.00 0.00 0.00 4.01
3292 6840 1.398451 CGGCAAGTGATCGTTGTTGTC 60.398 52.381 8.86 1.36 0.00 3.18
3297 6845 0.163788 GTGATCGTTGTTGTCGCTGG 59.836 55.000 0.00 0.00 0.00 4.85
3298 6846 0.249699 TGATCGTTGTTGTCGCTGGT 60.250 50.000 0.00 0.00 0.00 4.00
3299 6847 0.865769 GATCGTTGTTGTCGCTGGTT 59.134 50.000 0.00 0.00 0.00 3.67
3300 6848 2.063266 GATCGTTGTTGTCGCTGGTTA 58.937 47.619 0.00 0.00 0.00 2.85
3301 6849 2.157834 TCGTTGTTGTCGCTGGTTAT 57.842 45.000 0.00 0.00 0.00 1.89
3302 6850 3.300852 TCGTTGTTGTCGCTGGTTATA 57.699 42.857 0.00 0.00 0.00 0.98
3303 6851 3.852286 TCGTTGTTGTCGCTGGTTATAT 58.148 40.909 0.00 0.00 0.00 0.86
3304 6852 4.247258 TCGTTGTTGTCGCTGGTTATATT 58.753 39.130 0.00 0.00 0.00 1.28
3305 6853 4.691685 TCGTTGTTGTCGCTGGTTATATTT 59.308 37.500 0.00 0.00 0.00 1.40
3306 6854 5.179742 TCGTTGTTGTCGCTGGTTATATTTT 59.820 36.000 0.00 0.00 0.00 1.82
3307 6855 6.368243 TCGTTGTTGTCGCTGGTTATATTTTA 59.632 34.615 0.00 0.00 0.00 1.52
3308 6856 7.064847 TCGTTGTTGTCGCTGGTTATATTTTAT 59.935 33.333 0.00 0.00 0.00 1.40
3309 6857 7.372396 CGTTGTTGTCGCTGGTTATATTTTATC 59.628 37.037 0.00 0.00 0.00 1.75
3310 6858 6.939627 TGTTGTCGCTGGTTATATTTTATCG 58.060 36.000 0.00 0.00 0.00 2.92
3311 6859 6.757478 TGTTGTCGCTGGTTATATTTTATCGA 59.243 34.615 0.00 0.00 0.00 3.59
3312 6860 7.439955 TGTTGTCGCTGGTTATATTTTATCGAT 59.560 33.333 2.16 2.16 0.00 3.59
3313 6861 7.576750 TGTCGCTGGTTATATTTTATCGATC 57.423 36.000 0.00 0.00 0.00 3.69
3314 6862 6.588756 TGTCGCTGGTTATATTTTATCGATCC 59.411 38.462 0.00 0.00 0.00 3.36
3315 6863 6.588756 GTCGCTGGTTATATTTTATCGATCCA 59.411 38.462 0.00 0.00 0.00 3.41
3316 6864 7.117236 GTCGCTGGTTATATTTTATCGATCCAA 59.883 37.037 0.00 0.00 0.00 3.53
3317 6865 7.117236 TCGCTGGTTATATTTTATCGATCCAAC 59.883 37.037 0.00 0.00 0.00 3.77
3318 6866 7.095397 CGCTGGTTATATTTTATCGATCCAACA 60.095 37.037 0.00 0.00 0.00 3.33
3319 6867 8.730680 GCTGGTTATATTTTATCGATCCAACAT 58.269 33.333 0.00 0.00 0.00 2.71
3329 6877 9.923143 TTTTATCGATCCAACATACATAGTAGG 57.077 33.333 0.00 0.00 0.00 3.18
3330 6878 5.386958 TCGATCCAACATACATAGTAGGC 57.613 43.478 0.00 0.00 0.00 3.93
3331 6879 5.077564 TCGATCCAACATACATAGTAGGCT 58.922 41.667 0.00 0.00 0.00 4.58
3332 6880 5.538813 TCGATCCAACATACATAGTAGGCTT 59.461 40.000 0.00 0.00 0.00 4.35
3333 6881 5.864474 CGATCCAACATACATAGTAGGCTTC 59.136 44.000 0.00 0.00 0.00 3.86
3334 6882 6.516693 CGATCCAACATACATAGTAGGCTTCA 60.517 42.308 0.00 0.00 0.00 3.02
3335 6883 6.161855 TCCAACATACATAGTAGGCTTCAG 57.838 41.667 0.00 0.00 0.00 3.02
3336 6884 4.752101 CCAACATACATAGTAGGCTTCAGC 59.248 45.833 0.00 0.00 41.14 4.26
3371 6919 8.981724 TTATCGATTCAACATACATAGTAGGC 57.018 34.615 1.71 0.00 0.00 3.93
3372 6920 6.650427 TCGATTCAACATACATAGTAGGCT 57.350 37.500 0.00 0.00 0.00 4.58
3373 6921 7.050970 TCGATTCAACATACATAGTAGGCTT 57.949 36.000 0.00 0.00 0.00 4.35
3374 6922 7.145985 TCGATTCAACATACATAGTAGGCTTC 58.854 38.462 0.00 0.00 0.00 3.86
3375 6923 6.923508 CGATTCAACATACATAGTAGGCTTCA 59.076 38.462 0.00 0.00 0.00 3.02
3376 6924 7.115520 CGATTCAACATACATAGTAGGCTTCAG 59.884 40.741 0.00 0.00 0.00 3.02
3377 6925 5.601662 TCAACATACATAGTAGGCTTCAGC 58.398 41.667 0.00 0.00 41.14 4.26
3388 6936 1.427020 GCTTCAGCCGAACTCATGC 59.573 57.895 0.00 0.00 34.31 4.06
3389 6937 1.712081 CTTCAGCCGAACTCATGCG 59.288 57.895 0.00 0.00 0.00 4.73
3390 6938 2.301902 CTTCAGCCGAACTCATGCGC 62.302 60.000 0.00 0.00 0.00 6.09
3391 6939 4.214383 CAGCCGAACTCATGCGCG 62.214 66.667 0.00 0.00 0.00 6.86
3394 6942 3.490759 CCGAACTCATGCGCGCTT 61.491 61.111 33.29 24.21 0.00 4.68
3395 6943 2.020559 CGAACTCATGCGCGCTTC 59.979 61.111 33.29 24.24 0.00 3.86
3396 6944 2.729675 CGAACTCATGCGCGCTTCA 61.730 57.895 33.29 12.32 0.00 3.02
3397 6945 1.497278 GAACTCATGCGCGCTTCAA 59.503 52.632 33.29 12.75 0.00 2.69
3398 6946 0.519999 GAACTCATGCGCGCTTCAAG 60.520 55.000 33.29 24.56 0.00 3.02
3399 6947 2.277120 CTCATGCGCGCTTCAAGC 60.277 61.111 33.29 0.00 38.02 4.01
3400 6948 2.743538 TCATGCGCGCTTCAAGCT 60.744 55.556 33.29 4.96 39.60 3.74
3401 6949 2.177531 CATGCGCGCTTCAAGCTT 59.822 55.556 33.29 0.00 39.60 3.74
3402 6950 1.443194 CATGCGCGCTTCAAGCTTT 60.443 52.632 33.29 2.56 39.60 3.51
3403 6951 1.443194 ATGCGCGCTTCAAGCTTTG 60.443 52.632 33.29 0.00 39.60 2.77
3404 6952 2.050985 GCGCGCTTCAAGCTTTGT 60.051 55.556 26.67 0.00 39.60 2.83
3405 6953 1.206578 GCGCGCTTCAAGCTTTGTA 59.793 52.632 26.67 0.00 39.60 2.41
3406 6954 0.179189 GCGCGCTTCAAGCTTTGTAT 60.179 50.000 26.67 0.00 39.60 2.29
3407 6955 1.802839 CGCGCTTCAAGCTTTGTATC 58.197 50.000 8.02 0.00 39.60 2.24
3408 6956 1.802839 GCGCTTCAAGCTTTGTATCG 58.197 50.000 8.02 0.00 39.60 2.92
3409 6957 1.529826 GCGCTTCAAGCTTTGTATCGG 60.530 52.381 8.02 0.00 39.60 4.18
3410 6958 1.999735 CGCTTCAAGCTTTGTATCGGA 59.000 47.619 8.02 0.00 39.60 4.55
3411 6959 2.029728 CGCTTCAAGCTTTGTATCGGAG 59.970 50.000 8.02 0.00 39.60 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 2528 3.071206 ATCTCGTGCGCCTCACCT 61.071 61.111 4.18 0.00 42.69 4.00
216 2537 1.871408 CCACTAGGATGCATCTCGTGC 60.871 57.143 25.28 9.09 46.16 5.34
217 2538 1.410517 ACCACTAGGATGCATCTCGTG 59.589 52.381 25.28 24.48 38.69 4.35
220 2541 3.135530 AGGAAACCACTAGGATGCATCTC 59.864 47.826 25.28 15.54 38.69 2.75
221 2542 3.118531 AGGAAACCACTAGGATGCATCT 58.881 45.455 25.28 14.04 38.69 2.90
224 2577 4.919774 TTAAGGAAACCACTAGGATGCA 57.080 40.909 0.00 0.00 38.69 3.96
293 2652 3.041946 GGCTCCTTCTCCTTCTGGATTA 58.958 50.000 0.00 0.00 42.29 1.75
568 3102 3.402095 TTTGGGCGACAACGGTGGA 62.402 57.895 4.97 0.00 39.19 4.02
631 3165 4.863925 GCAGAGACCGGAGAGCGC 62.864 72.222 9.46 0.00 0.00 5.92
649 3183 1.299468 CGATGACGGAGCAGCTACC 60.299 63.158 0.00 0.00 35.72 3.18
682 3216 3.709633 ATGGTCGAGGCTGCTGCA 61.710 61.111 17.89 0.88 41.91 4.41
724 3258 0.323178 ACGAGACACATAGGGACGGT 60.323 55.000 0.00 0.00 0.00 4.83
726 3260 0.525668 GCACGAGACACATAGGGACG 60.526 60.000 0.00 0.00 0.00 4.79
728 3262 2.199117 GGCACGAGACACATAGGGA 58.801 57.895 0.00 0.00 0.00 4.20
746 3280 0.660595 CTAACTCTATGACGGCGGCG 60.661 60.000 31.06 31.06 0.00 6.46
770 3313 0.621571 CTCTCCTGATTCCCCACCCA 60.622 60.000 0.00 0.00 0.00 4.51
794 3337 2.751036 TGTGCGATGTGGCCCATG 60.751 61.111 10.99 5.67 32.56 3.66
807 3351 0.661483 GAAAAGGCAGAAGCGTGTGC 60.661 55.000 13.36 13.36 43.25 4.57
811 3355 1.952263 GCTGAAAAGGCAGAAGCGT 59.048 52.632 0.00 0.00 43.41 5.07
813 3357 1.211190 CCGCTGAAAAGGCAGAAGC 59.789 57.895 0.00 0.00 38.14 3.86
821 3365 0.165944 CACGTTAGCCCGCTGAAAAG 59.834 55.000 0.00 0.00 0.00 2.27
839 3383 5.640147 ACATGAAAAGTCATTTCTACCCCA 58.360 37.500 0.00 0.00 46.27 4.96
872 3416 4.270808 CGTTAGTTTTAACCACGAACACCT 59.729 41.667 8.50 0.00 37.97 4.00
927 3499 6.405278 ACATTTCTTCCCCTTTTAACACTG 57.595 37.500 0.00 0.00 0.00 3.66
933 3505 9.649316 TCTTTCTTAACATTTCTTCCCCTTTTA 57.351 29.630 0.00 0.00 0.00 1.52
939 3511 7.661847 TCTGTCTCTTTCTTAACATTTCTTCCC 59.338 37.037 0.00 0.00 0.00 3.97
952 3525 9.045745 AGAGAATTCCTTATCTGTCTCTTTCTT 57.954 33.333 0.65 0.00 38.93 2.52
975 3574 5.455612 GGAGGGTCGGGATAGATCTATAGAG 60.456 52.000 15.31 9.32 0.00 2.43
979 3578 2.927007 TGGAGGGTCGGGATAGATCTAT 59.073 50.000 15.26 15.26 0.00 1.98
980 3579 2.355309 TGGAGGGTCGGGATAGATCTA 58.645 52.381 4.57 4.57 0.00 1.98
1021 3688 1.078214 CCAGAAGCTCATCCGGCAA 60.078 57.895 0.00 0.00 0.00 4.52
1029 3696 2.844654 AGATCTCCTCCAGAAGCTCA 57.155 50.000 0.00 0.00 33.62 4.26
1184 3852 1.005215 AGTGGCAGGAATGAAGGAAGG 59.995 52.381 0.00 0.00 0.00 3.46
1582 4312 2.005606 ATGGGGTTGCTGTGGTCACA 62.006 55.000 3.64 3.64 39.32 3.58
1613 4343 7.279981 TCCACTTATCAAAATGAGAACCGTATG 59.720 37.037 0.00 0.00 0.00 2.39
1699 4432 3.069586 TGAAGTGTGTCTTGGACGAAGAT 59.930 43.478 3.04 0.00 42.82 2.40
1741 4475 0.673985 CCTACCAGGCGATCATCGAA 59.326 55.000 12.38 0.00 43.74 3.71
1755 4492 4.401837 AGGTCGTACTTGAGAATTCCTACC 59.598 45.833 0.65 0.00 0.00 3.18
1800 4537 2.620115 CTCCACAAGCGGCATATCAATT 59.380 45.455 1.45 0.00 0.00 2.32
1897 4649 2.704572 CCTTGACCACAGATTGAGGAC 58.295 52.381 0.00 0.00 32.20 3.85
1973 4725 4.782019 TTTTGAATGGGAAGAATGTCGG 57.218 40.909 0.00 0.00 0.00 4.79
2119 4874 4.949856 TCCTGTATGGGATGAAAGCTTTTC 59.050 41.667 14.05 7.75 36.20 2.29
2121 4876 4.018050 ACTCCTGTATGGGATGAAAGCTTT 60.018 41.667 12.53 12.53 34.56 3.51
2140 4913 7.390718 ACATACCTTGTGAATTGTAGAAACTCC 59.609 37.037 0.00 0.00 37.11 3.85
2427 5728 5.981088 ATCAACCACACATTCTTAATGCA 57.019 34.783 0.00 0.00 42.69 3.96
2449 5750 4.885325 TGATGAGTGTAGCCTCGTACATAA 59.115 41.667 0.00 0.00 35.40 1.90
2671 5985 7.658575 TCAAGTAAATTCTACAACAGGGTACAC 59.341 37.037 0.00 0.00 0.00 2.90
2924 6428 3.742433 ATAGCTCGAGATCCAGTTTGG 57.258 47.619 18.75 0.00 39.43 3.28
2946 6450 6.295916 CCCCATATCCTATAGTTCACTGAACC 60.296 46.154 16.81 1.62 42.85 3.62
3063 6596 7.281774 ACATGTTTCATCTCTTTACATGGCTAG 59.718 37.037 15.41 0.00 46.34 3.42
3123 6656 2.026449 AGGAAGCATCAGGGAAACAGAG 60.026 50.000 0.00 0.00 0.00 3.35
3124 6657 1.988107 AGGAAGCATCAGGGAAACAGA 59.012 47.619 0.00 0.00 0.00 3.41
3125 6658 2.089980 CAGGAAGCATCAGGGAAACAG 58.910 52.381 0.00 0.00 0.00 3.16
3126 6659 1.704628 TCAGGAAGCATCAGGGAAACA 59.295 47.619 0.00 0.00 0.00 2.83
3127 6660 2.496899 TCAGGAAGCATCAGGGAAAC 57.503 50.000 0.00 0.00 0.00 2.78
3128 6661 2.644299 TCTTCAGGAAGCATCAGGGAAA 59.356 45.455 4.15 0.00 38.28 3.13
3129 6662 2.269023 TCTTCAGGAAGCATCAGGGAA 58.731 47.619 4.15 0.00 38.28 3.97
3130 6663 1.956869 TCTTCAGGAAGCATCAGGGA 58.043 50.000 4.15 0.00 38.28 4.20
3131 6664 2.795231 TTCTTCAGGAAGCATCAGGG 57.205 50.000 4.15 0.00 38.28 4.45
3132 6665 3.683802 ACTTTCTTCAGGAAGCATCAGG 58.316 45.455 4.15 0.00 38.28 3.86
3133 6666 5.486526 ACTACTTTCTTCAGGAAGCATCAG 58.513 41.667 4.15 0.95 38.28 2.90
3134 6667 5.489792 ACTACTTTCTTCAGGAAGCATCA 57.510 39.130 4.15 0.00 38.28 3.07
3135 6668 6.635755 ACTACTACTTTCTTCAGGAAGCATC 58.364 40.000 4.15 0.00 38.28 3.91
3136 6669 6.613153 ACTACTACTTTCTTCAGGAAGCAT 57.387 37.500 4.15 0.00 38.28 3.79
3137 6670 7.719871 ATACTACTACTTTCTTCAGGAAGCA 57.280 36.000 4.15 0.00 38.28 3.91
3138 6671 8.684520 TGTATACTACTACTTTCTTCAGGAAGC 58.315 37.037 4.17 0.00 38.28 3.86
3142 6675 9.751542 CCAATGTATACTACTACTTTCTTCAGG 57.248 37.037 4.17 0.00 0.00 3.86
3143 6676 9.250624 GCCAATGTATACTACTACTTTCTTCAG 57.749 37.037 4.17 0.00 0.00 3.02
3144 6677 8.978472 AGCCAATGTATACTACTACTTTCTTCA 58.022 33.333 4.17 0.00 0.00 3.02
3147 6680 9.863650 TCTAGCCAATGTATACTACTACTTTCT 57.136 33.333 4.17 0.00 0.00 2.52
3150 6683 9.417561 TGTTCTAGCCAATGTATACTACTACTT 57.582 33.333 4.17 0.00 0.00 2.24
3151 6684 8.991783 TGTTCTAGCCAATGTATACTACTACT 57.008 34.615 4.17 0.00 0.00 2.57
3152 6685 9.064706 TCTGTTCTAGCCAATGTATACTACTAC 57.935 37.037 4.17 0.00 0.00 2.73
3153 6686 9.286170 CTCTGTTCTAGCCAATGTATACTACTA 57.714 37.037 4.17 0.00 0.00 1.82
3154 6687 7.780745 ACTCTGTTCTAGCCAATGTATACTACT 59.219 37.037 4.17 0.00 0.00 2.57
3155 6688 7.942990 ACTCTGTTCTAGCCAATGTATACTAC 58.057 38.462 4.17 0.00 0.00 2.73
3156 6689 8.534954 AACTCTGTTCTAGCCAATGTATACTA 57.465 34.615 4.17 0.00 0.00 1.82
3157 6690 7.425224 AACTCTGTTCTAGCCAATGTATACT 57.575 36.000 4.17 0.00 0.00 2.12
3158 6691 7.764443 TGAAACTCTGTTCTAGCCAATGTATAC 59.236 37.037 0.00 0.00 0.00 1.47
3159 6692 7.847096 TGAAACTCTGTTCTAGCCAATGTATA 58.153 34.615 0.00 0.00 0.00 1.47
3160 6693 6.711277 TGAAACTCTGTTCTAGCCAATGTAT 58.289 36.000 0.00 0.00 0.00 2.29
3161 6694 6.109156 TGAAACTCTGTTCTAGCCAATGTA 57.891 37.500 0.00 0.00 0.00 2.29
3197 6745 4.032960 TCTGAATACTGCAATTGTGGGT 57.967 40.909 7.40 6.35 0.00 4.51
3239 6787 8.815565 ATCTTCAGTCTTGAGAGATAGTTACA 57.184 34.615 0.00 0.00 33.42 2.41
3241 6789 9.119418 CAGATCTTCAGTCTTGAGAGATAGTTA 57.881 37.037 0.00 0.00 34.37 2.24
3256 6804 3.678056 TGCCGTTTACAGATCTTCAGT 57.322 42.857 0.00 0.00 0.00 3.41
3278 6826 0.163788 CCAGCGACAACAACGATCAC 59.836 55.000 0.00 0.00 0.00 3.06
3292 6840 6.961359 TGGATCGATAAAATATAACCAGCG 57.039 37.500 0.00 0.00 0.00 5.18
3303 6851 9.923143 CCTACTATGTATGTTGGATCGATAAAA 57.077 33.333 0.00 0.00 33.30 1.52
3304 6852 8.033038 GCCTACTATGTATGTTGGATCGATAAA 58.967 37.037 0.00 0.00 33.30 1.40
3305 6853 7.396339 AGCCTACTATGTATGTTGGATCGATAA 59.604 37.037 0.00 0.00 33.30 1.75
3306 6854 6.890268 AGCCTACTATGTATGTTGGATCGATA 59.110 38.462 0.00 0.00 33.30 2.92
3307 6855 5.717178 AGCCTACTATGTATGTTGGATCGAT 59.283 40.000 0.00 0.00 33.30 3.59
3308 6856 5.077564 AGCCTACTATGTATGTTGGATCGA 58.922 41.667 0.00 0.00 33.30 3.59
3309 6857 5.392767 AGCCTACTATGTATGTTGGATCG 57.607 43.478 0.00 0.00 33.30 3.69
3310 6858 6.759272 TGAAGCCTACTATGTATGTTGGATC 58.241 40.000 0.00 0.00 33.30 3.36
3311 6859 6.742644 GCTGAAGCCTACTATGTATGTTGGAT 60.743 42.308 0.00 0.00 33.30 3.41
3312 6860 5.453339 GCTGAAGCCTACTATGTATGTTGGA 60.453 44.000 0.00 0.00 33.30 3.53
3313 6861 4.752101 GCTGAAGCCTACTATGTATGTTGG 59.248 45.833 0.00 0.00 34.33 3.77
3314 6862 5.914085 GCTGAAGCCTACTATGTATGTTG 57.086 43.478 0.00 0.00 34.31 3.33
3329 6877 6.462073 TCGATAAAATATAACGGCTGAAGC 57.538 37.500 0.00 0.00 41.14 3.86
3330 6878 8.708742 TGAATCGATAAAATATAACGGCTGAAG 58.291 33.333 0.00 0.00 0.00 3.02
3331 6879 8.596271 TGAATCGATAAAATATAACGGCTGAA 57.404 30.769 0.00 0.00 0.00 3.02
3332 6880 8.492748 GTTGAATCGATAAAATATAACGGCTGA 58.507 33.333 0.00 0.00 0.00 4.26
3333 6881 8.279800 TGTTGAATCGATAAAATATAACGGCTG 58.720 33.333 0.00 0.00 0.00 4.85
3334 6882 8.373048 TGTTGAATCGATAAAATATAACGGCT 57.627 30.769 0.00 0.00 0.00 5.52
3370 6918 1.427020 GCATGAGTTCGGCTGAAGC 59.573 57.895 8.61 4.34 41.14 3.86
3371 6919 1.712081 CGCATGAGTTCGGCTGAAG 59.288 57.895 8.61 0.00 33.98 3.02
3372 6920 2.390599 GCGCATGAGTTCGGCTGAA 61.391 57.895 3.13 3.13 0.00 3.02
3373 6921 2.815211 GCGCATGAGTTCGGCTGA 60.815 61.111 0.30 0.00 0.00 4.26
3374 6922 4.214383 CGCGCATGAGTTCGGCTG 62.214 66.667 8.75 0.00 0.00 4.85
3377 6925 3.425938 GAAGCGCGCATGAGTTCGG 62.426 63.158 35.10 0.00 0.00 4.30
3378 6926 2.020559 GAAGCGCGCATGAGTTCG 59.979 61.111 35.10 0.00 0.00 3.95
3379 6927 0.519999 CTTGAAGCGCGCATGAGTTC 60.520 55.000 35.10 26.21 0.00 3.01
3380 6928 1.499056 CTTGAAGCGCGCATGAGTT 59.501 52.632 35.10 18.81 0.00 3.01
3381 6929 3.031964 GCTTGAAGCGCGCATGAGT 62.032 57.895 35.10 9.38 0.00 3.41
3382 6930 2.277120 GCTTGAAGCGCGCATGAG 60.277 61.111 35.10 24.00 0.00 2.90
3391 6939 3.665173 CTCCGATACAAAGCTTGAAGC 57.335 47.619 9.59 9.59 42.84 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.