Multiple sequence alignment - TraesCS5D01G541000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G541000 chr5D 100.000 3276 0 0 1 3276 552034542 552031267 0.000000e+00 6050
1 TraesCS5D01G541000 chr5D 89.744 2496 208 22 564 3042 551989513 551987049 0.000000e+00 3147
2 TraesCS5D01G541000 chr5D 72.417 1200 260 51 820 1976 543508795 543507624 1.900000e-82 316
3 TraesCS5D01G541000 chr5D 97.345 113 3 0 1 113 560286241 560286129 3.340000e-45 193
4 TraesCS5D01G541000 chr4A 95.045 2866 128 9 422 3276 616213184 616210322 0.000000e+00 4494
5 TraesCS5D01G541000 chr4A 94.062 2863 144 15 422 3276 616297061 616299905 0.000000e+00 4322
6 TraesCS5D01G541000 chr4A 95.202 1855 78 5 1311 3156 616230056 616228204 0.000000e+00 2922
7 TraesCS5D01G541000 chr4A 87.304 1725 172 21 564 2266 616315011 616316710 0.000000e+00 1929
8 TraesCS5D01G541000 chr4A 97.297 111 3 0 1 111 455027808 455027918 4.320000e-44 189
9 TraesCS5D01G541000 chr4A 83.974 156 22 2 3042 3194 561518894 561518739 2.630000e-31 147
10 TraesCS5D01G541000 chr4A 83.333 156 23 2 3044 3196 65058000 65058155 1.230000e-29 141
11 TraesCS5D01G541000 chr5B 95.649 2459 96 10 538 2988 699949676 699952131 0.000000e+00 3938
12 TraesCS5D01G541000 chr5B 89.815 1620 115 25 532 2140 700229903 700228323 0.000000e+00 2032
13 TraesCS5D01G541000 chr5B 88.419 639 63 6 2414 3042 700228019 700227382 0.000000e+00 760
14 TraesCS5D01G541000 chr5B 93.284 268 18 0 115 382 408958243 408958510 2.370000e-106 396
15 TraesCS5D01G541000 chr5B 72.712 1213 276 41 790 1967 703529332 703530524 4.020000e-94 355
16 TraesCS5D01G541000 chr5B 86.129 310 41 2 2068 2377 700228325 700228018 1.880000e-87 333
17 TraesCS5D01G541000 chr5B 90.244 123 7 4 422 542 699949528 699949647 4.380000e-34 156
18 TraesCS5D01G541000 chr5B 94.030 67 2 2 3199 3265 700227387 700227323 2.080000e-17 100
19 TraesCS5D01G541000 chr1D 81.882 861 130 12 609 1456 457779293 457780140 0.000000e+00 702
20 TraesCS5D01G541000 chr7B 93.309 269 18 0 116 384 396334092 396333824 6.590000e-107 398
21 TraesCS5D01G541000 chr7B 92.937 269 19 0 116 384 607728378 607728646 3.060000e-105 392
22 TraesCS5D01G541000 chr3B 93.284 268 18 0 117 384 586266082 586265815 2.370000e-106 396
23 TraesCS5D01G541000 chr3B 93.258 267 18 0 117 383 557194177 557193911 8.520000e-106 394
24 TraesCS5D01G541000 chr2B 93.585 265 17 0 117 381 503482246 503481982 2.370000e-106 396
25 TraesCS5D01G541000 chrUn 93.258 267 18 0 117 383 66272817 66273083 8.520000e-106 394
26 TraesCS5D01G541000 chr6B 93.284 268 17 1 117 383 446119746 446120013 8.520000e-106 394
27 TraesCS5D01G541000 chr3D 91.815 281 21 2 112 390 281948416 281948696 1.100000e-104 390
28 TraesCS5D01G541000 chr4B 77.435 421 91 3 1558 1976 581072794 581072376 7.020000e-62 248
29 TraesCS5D01G541000 chr2D 98.198 111 2 0 1 111 314360671 314360781 9.270000e-46 195
30 TraesCS5D01G541000 chr2D 97.345 113 3 0 1 113 480541507 480541619 3.340000e-45 193
31 TraesCS5D01G541000 chr2D 96.491 114 4 0 1 114 35246702 35246589 4.320000e-44 189
32 TraesCS5D01G541000 chr2D 92.248 129 7 3 1 128 131274057 131273931 2.600000e-41 180
33 TraesCS5D01G541000 chr6D 97.345 113 3 0 1 113 107938629 107938741 3.340000e-45 193
34 TraesCS5D01G541000 chr6D 83.226 155 23 2 3043 3194 465143928 465143774 4.410000e-29 139
35 TraesCS5D01G541000 chr4D 96.491 114 4 0 1 114 487284394 487284281 4.320000e-44 189
36 TraesCS5D01G541000 chr7A 95.690 116 5 0 1 116 43173044 43172929 1.550000e-43 187
37 TraesCS5D01G541000 chr7A 81.935 155 25 2 3043 3194 54687336 54687182 9.540000e-26 128
38 TraesCS5D01G541000 chr7A 81.457 151 25 2 3047 3194 437071111 437070961 1.600000e-23 121
39 TraesCS5D01G541000 chr2A 85.806 155 19 2 3043 3194 281234187 281234033 9.410000e-36 161
40 TraesCS5D01G541000 chr2A 83.117 154 23 2 3044 3194 453894253 453894100 1.590000e-28 137
41 TraesCS5D01G541000 chr1B 84.000 150 21 2 3043 3189 142518866 142518717 1.230000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G541000 chr5D 552031267 552034542 3275 True 6050.00 6050 100.00000 1 3276 1 chr5D.!!$R3 3275
1 TraesCS5D01G541000 chr5D 551987049 551989513 2464 True 3147.00 3147 89.74400 564 3042 1 chr5D.!!$R2 2478
2 TraesCS5D01G541000 chr5D 543507624 543508795 1171 True 316.00 316 72.41700 820 1976 1 chr5D.!!$R1 1156
3 TraesCS5D01G541000 chr4A 616210322 616213184 2862 True 4494.00 4494 95.04500 422 3276 1 chr4A.!!$R2 2854
4 TraesCS5D01G541000 chr4A 616297061 616299905 2844 False 4322.00 4322 94.06200 422 3276 1 chr4A.!!$F3 2854
5 TraesCS5D01G541000 chr4A 616228204 616230056 1852 True 2922.00 2922 95.20200 1311 3156 1 chr4A.!!$R3 1845
6 TraesCS5D01G541000 chr4A 616315011 616316710 1699 False 1929.00 1929 87.30400 564 2266 1 chr4A.!!$F4 1702
7 TraesCS5D01G541000 chr5B 699949528 699952131 2603 False 2047.00 3938 92.94650 422 2988 2 chr5B.!!$F3 2566
8 TraesCS5D01G541000 chr5B 700227323 700229903 2580 True 806.25 2032 89.59825 532 3265 4 chr5B.!!$R1 2733
9 TraesCS5D01G541000 chr5B 703529332 703530524 1192 False 355.00 355 72.71200 790 1967 1 chr5B.!!$F2 1177
10 TraesCS5D01G541000 chr1D 457779293 457780140 847 False 702.00 702 81.88200 609 1456 1 chr1D.!!$F1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 393 0.034896 AACAACCCCTAGTGTCAGCG 59.965 55.0 0.0 0.0 0.00 5.18 F
397 398 0.108615 CCCCTAGTGTCAGCGTTCTG 60.109 60.0 0.0 0.0 41.67 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2334 3.375699 AGGTGTAACATTCGAGGATCCT 58.624 45.455 16.13 16.13 39.98 3.24 R
2313 2507 6.456181 GCTGATTATCTTTCTTGTTGACGAGG 60.456 42.308 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.876701 GCTGCCGACCCATATGAA 57.123 55.556 3.65 0.00 0.00 2.57
18 19 3.094386 GCTGCCGACCCATATGAAA 57.906 52.632 3.65 0.00 0.00 2.69
19 20 1.388547 GCTGCCGACCCATATGAAAA 58.611 50.000 3.65 0.00 0.00 2.29
20 21 1.748493 GCTGCCGACCCATATGAAAAA 59.252 47.619 3.65 0.00 0.00 1.94
21 22 2.479560 GCTGCCGACCCATATGAAAAAC 60.480 50.000 3.65 0.00 0.00 2.43
22 23 2.752354 CTGCCGACCCATATGAAAAACA 59.248 45.455 3.65 0.00 0.00 2.83
23 24 2.752354 TGCCGACCCATATGAAAAACAG 59.248 45.455 3.65 0.00 0.00 3.16
24 25 2.099098 GCCGACCCATATGAAAAACAGG 59.901 50.000 3.65 0.00 0.00 4.00
25 26 2.687935 CCGACCCATATGAAAAACAGGG 59.312 50.000 3.65 0.00 37.47 4.45
26 27 2.099098 CGACCCATATGAAAAACAGGGC 59.901 50.000 3.65 0.00 35.63 5.19
27 28 2.099098 GACCCATATGAAAAACAGGGCG 59.901 50.000 3.65 0.00 35.63 6.13
28 29 1.408702 CCCATATGAAAAACAGGGCGG 59.591 52.381 3.65 0.00 0.00 6.13
29 30 2.374184 CCATATGAAAAACAGGGCGGA 58.626 47.619 3.65 0.00 0.00 5.54
30 31 2.099098 CCATATGAAAAACAGGGCGGAC 59.901 50.000 3.65 0.00 0.00 4.79
31 32 1.444836 TATGAAAAACAGGGCGGACG 58.555 50.000 0.00 0.00 0.00 4.79
32 33 1.862602 ATGAAAAACAGGGCGGACGC 61.863 55.000 8.39 8.39 41.06 5.19
88 89 2.413837 ACGAAATCTCCGTCTGTTTGG 58.586 47.619 0.00 0.00 34.97 3.28
89 90 1.732259 CGAAATCTCCGTCTGTTTGGG 59.268 52.381 0.00 0.00 0.00 4.12
90 91 2.779506 GAAATCTCCGTCTGTTTGGGT 58.220 47.619 0.00 0.00 0.00 4.51
91 92 2.474410 AATCTCCGTCTGTTTGGGTC 57.526 50.000 0.00 0.00 0.00 4.46
92 93 0.246635 ATCTCCGTCTGTTTGGGTCG 59.753 55.000 0.00 0.00 0.00 4.79
93 94 1.374252 CTCCGTCTGTTTGGGTCGG 60.374 63.158 0.00 0.00 42.12 4.79
94 95 3.047877 CCGTCTGTTTGGGTCGGC 61.048 66.667 0.00 0.00 35.01 5.54
95 96 3.047877 CGTCTGTTTGGGTCGGCC 61.048 66.667 0.00 0.00 0.00 6.13
105 106 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
106 107 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
109 110 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
110 111 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
111 112 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
112 113 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
113 114 1.439679 CCCGTTGGAGTTGCTCTAAC 58.560 55.000 13.14 13.14 44.66 2.34
122 123 2.317530 GTTGCTCTAACTAGGGGCTG 57.682 55.000 0.00 0.00 36.34 4.85
123 124 1.555533 GTTGCTCTAACTAGGGGCTGT 59.444 52.381 0.00 0.00 36.34 4.40
124 125 1.952621 TGCTCTAACTAGGGGCTGTT 58.047 50.000 0.00 0.00 0.00 3.16
125 126 2.266279 TGCTCTAACTAGGGGCTGTTT 58.734 47.619 0.00 0.00 0.00 2.83
126 127 2.027192 TGCTCTAACTAGGGGCTGTTTG 60.027 50.000 0.00 0.00 0.00 2.93
127 128 2.681097 GCTCTAACTAGGGGCTGTTTGG 60.681 54.545 0.00 0.00 0.00 3.28
128 129 2.572104 CTCTAACTAGGGGCTGTTTGGT 59.428 50.000 0.00 0.00 0.00 3.67
129 130 2.983898 TCTAACTAGGGGCTGTTTGGTT 59.016 45.455 0.00 0.00 0.00 3.67
130 131 2.287977 AACTAGGGGCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
131 132 1.446016 ACTAGGGGCTGTTTGGTTCT 58.554 50.000 0.00 0.00 0.00 3.01
132 133 2.627933 ACTAGGGGCTGTTTGGTTCTA 58.372 47.619 0.00 0.00 0.00 2.10
133 134 2.572104 ACTAGGGGCTGTTTGGTTCTAG 59.428 50.000 0.00 0.00 0.00 2.43
134 135 0.698818 AGGGGCTGTTTGGTTCTAGG 59.301 55.000 0.00 0.00 0.00 3.02
135 136 0.965866 GGGGCTGTTTGGTTCTAGGC 60.966 60.000 0.00 0.00 35.24 3.93
136 137 0.965866 GGGCTGTTTGGTTCTAGGCC 60.966 60.000 0.00 0.00 46.53 5.19
137 138 0.038310 GGCTGTTTGGTTCTAGGCCT 59.962 55.000 11.78 11.78 35.73 5.19
138 139 1.280998 GGCTGTTTGGTTCTAGGCCTA 59.719 52.381 13.09 13.09 35.73 3.93
139 140 2.633488 GCTGTTTGGTTCTAGGCCTAG 58.367 52.381 30.94 30.94 34.56 3.02
140 141 2.633488 CTGTTTGGTTCTAGGCCTAGC 58.367 52.381 31.76 19.82 33.32 3.42
141 142 1.982226 TGTTTGGTTCTAGGCCTAGCA 59.018 47.619 31.76 21.24 33.32 3.49
142 143 2.576191 TGTTTGGTTCTAGGCCTAGCAT 59.424 45.455 31.76 0.00 33.32 3.79
143 144 3.010138 TGTTTGGTTCTAGGCCTAGCATT 59.990 43.478 31.76 0.00 33.32 3.56
144 145 3.281727 TTGGTTCTAGGCCTAGCATTG 57.718 47.619 31.76 12.05 33.32 2.82
145 146 1.134098 TGGTTCTAGGCCTAGCATTGC 60.134 52.381 31.76 18.76 33.32 3.56
155 156 3.062042 GCCTAGCATTGCCATATTTTGC 58.938 45.455 4.70 0.00 0.00 3.68
156 157 3.656559 CCTAGCATTGCCATATTTTGCC 58.343 45.455 4.70 0.00 33.85 4.52
157 158 3.069872 CCTAGCATTGCCATATTTTGCCA 59.930 43.478 4.70 0.00 33.85 4.92
158 159 2.908916 AGCATTGCCATATTTTGCCAC 58.091 42.857 4.70 0.00 33.85 5.01
159 160 2.236644 AGCATTGCCATATTTTGCCACA 59.763 40.909 4.70 0.00 33.85 4.17
160 161 2.352342 GCATTGCCATATTTTGCCACAC 59.648 45.455 0.00 0.00 0.00 3.82
161 162 3.597255 CATTGCCATATTTTGCCACACA 58.403 40.909 0.00 0.00 0.00 3.72
162 163 3.977134 TTGCCATATTTTGCCACACAT 57.023 38.095 0.00 0.00 0.00 3.21
163 164 3.977134 TGCCATATTTTGCCACACATT 57.023 38.095 0.00 0.00 0.00 2.71
164 165 4.283363 TGCCATATTTTGCCACACATTT 57.717 36.364 0.00 0.00 0.00 2.32
165 166 4.649692 TGCCATATTTTGCCACACATTTT 58.350 34.783 0.00 0.00 0.00 1.82
166 167 5.068636 TGCCATATTTTGCCACACATTTTT 58.931 33.333 0.00 0.00 0.00 1.94
167 168 5.048921 TGCCATATTTTGCCACACATTTTTG 60.049 36.000 0.00 0.00 0.00 2.44
168 169 5.392286 CCATATTTTGCCACACATTTTTGC 58.608 37.500 0.00 0.00 0.00 3.68
169 170 3.986442 ATTTTGCCACACATTTTTGCC 57.014 38.095 0.00 0.00 0.00 4.52
170 171 2.408271 TTTGCCACACATTTTTGCCA 57.592 40.000 0.00 0.00 0.00 4.92
171 172 2.408271 TTGCCACACATTTTTGCCAA 57.592 40.000 0.00 0.00 0.00 4.52
172 173 1.950828 TGCCACACATTTTTGCCAAG 58.049 45.000 0.00 0.00 0.00 3.61
173 174 0.587768 GCCACACATTTTTGCCAAGC 59.412 50.000 0.00 0.00 0.00 4.01
174 175 1.811176 GCCACACATTTTTGCCAAGCT 60.811 47.619 0.00 0.00 0.00 3.74
175 176 2.563702 CCACACATTTTTGCCAAGCTT 58.436 42.857 0.00 0.00 0.00 3.74
176 177 2.288458 CCACACATTTTTGCCAAGCTTG 59.712 45.455 19.93 19.93 0.00 4.01
177 178 1.941975 ACACATTTTTGCCAAGCTTGC 59.058 42.857 21.43 16.17 0.00 4.01
178 179 1.264826 CACATTTTTGCCAAGCTTGCC 59.735 47.619 21.43 11.17 0.00 4.52
179 180 1.141455 ACATTTTTGCCAAGCTTGCCT 59.859 42.857 21.43 0.00 0.00 4.75
180 181 2.368221 ACATTTTTGCCAAGCTTGCCTA 59.632 40.909 21.43 3.89 0.00 3.93
181 182 3.181456 ACATTTTTGCCAAGCTTGCCTAA 60.181 39.130 21.43 10.63 0.00 2.69
182 183 2.818130 TTTTGCCAAGCTTGCCTAAG 57.182 45.000 21.43 8.08 36.97 2.18
183 184 1.993956 TTTGCCAAGCTTGCCTAAGA 58.006 45.000 21.43 1.40 35.92 2.10
184 185 2.220653 TTGCCAAGCTTGCCTAAGAT 57.779 45.000 21.43 0.00 35.92 2.40
185 186 2.220653 TGCCAAGCTTGCCTAAGATT 57.779 45.000 21.43 0.00 42.86 2.40
186 187 3.364460 TGCCAAGCTTGCCTAAGATTA 57.636 42.857 21.43 0.00 40.32 1.75
187 188 3.282021 TGCCAAGCTTGCCTAAGATTAG 58.718 45.455 21.43 4.37 40.32 1.73
188 189 3.282885 GCCAAGCTTGCCTAAGATTAGT 58.717 45.455 21.43 0.00 40.32 2.24
189 190 3.696548 GCCAAGCTTGCCTAAGATTAGTT 59.303 43.478 21.43 0.00 40.32 2.24
190 191 4.201960 GCCAAGCTTGCCTAAGATTAGTTC 60.202 45.833 21.43 0.00 40.32 3.01
191 192 4.943705 CCAAGCTTGCCTAAGATTAGTTCA 59.056 41.667 21.43 0.00 40.32 3.18
192 193 5.415701 CCAAGCTTGCCTAAGATTAGTTCAA 59.584 40.000 21.43 2.80 40.32 2.69
193 194 6.317857 CAAGCTTGCCTAAGATTAGTTCAAC 58.682 40.000 14.65 0.00 40.32 3.18
194 195 5.560724 AGCTTGCCTAAGATTAGTTCAACA 58.439 37.500 0.00 0.00 35.92 3.33
195 196 6.003950 AGCTTGCCTAAGATTAGTTCAACAA 58.996 36.000 0.00 0.00 35.92 2.83
196 197 6.490040 AGCTTGCCTAAGATTAGTTCAACAAA 59.510 34.615 0.00 0.00 35.92 2.83
197 198 7.014230 AGCTTGCCTAAGATTAGTTCAACAAAA 59.986 33.333 0.00 0.00 35.92 2.44
198 199 7.814587 GCTTGCCTAAGATTAGTTCAACAAAAT 59.185 33.333 0.00 0.00 35.92 1.82
199 200 9.132521 CTTGCCTAAGATTAGTTCAACAAAATG 57.867 33.333 0.00 0.00 35.92 2.32
200 201 8.402798 TGCCTAAGATTAGTTCAACAAAATGA 57.597 30.769 0.00 0.00 0.00 2.57
201 202 8.514594 TGCCTAAGATTAGTTCAACAAAATGAG 58.485 33.333 0.00 0.00 0.00 2.90
202 203 8.730680 GCCTAAGATTAGTTCAACAAAATGAGA 58.269 33.333 0.00 0.00 0.00 3.27
204 205 9.766277 CTAAGATTAGTTCAACAAAATGAGAGC 57.234 33.333 0.00 0.00 0.00 4.09
205 206 7.150783 AGATTAGTTCAACAAAATGAGAGCC 57.849 36.000 0.00 0.00 0.00 4.70
206 207 6.716628 AGATTAGTTCAACAAAATGAGAGCCA 59.283 34.615 0.00 0.00 0.00 4.75
207 208 4.574599 AGTTCAACAAAATGAGAGCCAC 57.425 40.909 0.00 0.00 0.00 5.01
208 209 3.953612 AGTTCAACAAAATGAGAGCCACA 59.046 39.130 0.00 0.00 0.00 4.17
209 210 4.402155 AGTTCAACAAAATGAGAGCCACAA 59.598 37.500 0.00 0.00 0.00 3.33
210 211 4.572985 TCAACAAAATGAGAGCCACAAG 57.427 40.909 0.00 0.00 0.00 3.16
211 212 3.953612 TCAACAAAATGAGAGCCACAAGT 59.046 39.130 0.00 0.00 0.00 3.16
212 213 4.402155 TCAACAAAATGAGAGCCACAAGTT 59.598 37.500 0.00 0.00 0.00 2.66
213 214 4.311816 ACAAAATGAGAGCCACAAGTTG 57.688 40.909 0.00 0.00 0.00 3.16
221 222 3.860681 CCACAAGTTGGCAAGCCT 58.139 55.556 12.96 0.00 39.07 4.58
222 223 3.034924 CCACAAGTTGGCAAGCCTA 57.965 52.632 12.96 1.22 39.07 3.93
223 224 1.327303 CCACAAGTTGGCAAGCCTAA 58.673 50.000 12.96 2.46 39.07 2.69
224 225 1.270550 CCACAAGTTGGCAAGCCTAAG 59.729 52.381 12.96 1.51 39.07 2.18
225 226 1.956477 CACAAGTTGGCAAGCCTAAGT 59.044 47.619 12.96 5.38 36.94 2.24
226 227 1.956477 ACAAGTTGGCAAGCCTAAGTG 59.044 47.619 12.96 8.58 36.94 3.16
227 228 2.229792 CAAGTTGGCAAGCCTAAGTGA 58.770 47.619 12.96 0.00 36.94 3.41
228 229 2.622942 CAAGTTGGCAAGCCTAAGTGAA 59.377 45.455 12.96 0.00 36.94 3.18
229 230 3.160679 AGTTGGCAAGCCTAAGTGAAT 57.839 42.857 12.96 0.00 36.94 2.57
230 231 3.084786 AGTTGGCAAGCCTAAGTGAATC 58.915 45.455 12.96 0.00 36.94 2.52
231 232 3.084786 GTTGGCAAGCCTAAGTGAATCT 58.915 45.455 12.96 0.00 36.94 2.40
232 233 3.439857 TGGCAAGCCTAAGTGAATCTT 57.560 42.857 12.96 0.00 39.89 2.40
233 234 3.084039 TGGCAAGCCTAAGTGAATCTTG 58.916 45.455 12.96 0.00 37.56 3.02
235 236 3.772060 CAAGCCTAAGTGAATCTTGCC 57.228 47.619 0.00 0.00 37.56 4.52
236 237 3.084039 CAAGCCTAAGTGAATCTTGCCA 58.916 45.455 0.00 0.00 37.56 4.92
237 238 2.716217 AGCCTAAGTGAATCTTGCCAC 58.284 47.619 0.00 0.00 37.56 5.01
238 239 2.040278 AGCCTAAGTGAATCTTGCCACA 59.960 45.455 0.00 0.00 37.56 4.17
239 240 3.019564 GCCTAAGTGAATCTTGCCACAT 58.980 45.455 0.00 0.00 37.56 3.21
240 241 3.445096 GCCTAAGTGAATCTTGCCACATT 59.555 43.478 0.00 0.00 37.56 2.71
241 242 4.082026 GCCTAAGTGAATCTTGCCACATTT 60.082 41.667 0.00 0.00 37.56 2.32
242 243 5.567423 GCCTAAGTGAATCTTGCCACATTTT 60.567 40.000 0.00 0.00 37.56 1.82
243 244 6.458210 CCTAAGTGAATCTTGCCACATTTTT 58.542 36.000 0.00 0.00 37.56 1.94
263 264 6.522625 TTTTTATGTGTATGACATGTGGGG 57.477 37.500 1.15 0.00 45.43 4.96
264 265 4.853468 TTATGTGTATGACATGTGGGGT 57.147 40.909 1.15 0.00 45.43 4.95
265 266 2.779755 TGTGTATGACATGTGGGGTC 57.220 50.000 1.15 0.00 35.83 4.46
266 267 1.280710 TGTGTATGACATGTGGGGTCC 59.719 52.381 1.15 0.00 34.36 4.46
267 268 1.280710 GTGTATGACATGTGGGGTCCA 59.719 52.381 1.15 0.00 34.36 4.02
268 269 1.988846 TGTATGACATGTGGGGTCCAA 59.011 47.619 1.15 0.00 34.18 3.53
269 270 2.026356 TGTATGACATGTGGGGTCCAAG 60.026 50.000 1.15 0.00 34.18 3.61
270 271 1.075601 ATGACATGTGGGGTCCAAGT 58.924 50.000 1.15 0.00 34.18 3.16
271 272 0.110295 TGACATGTGGGGTCCAAGTG 59.890 55.000 1.15 0.00 34.18 3.16
272 273 0.110486 GACATGTGGGGTCCAAGTGT 59.890 55.000 1.15 5.52 36.52 3.55
273 274 0.178992 ACATGTGGGGTCCAAGTGTG 60.179 55.000 0.00 0.00 33.90 3.82
275 276 2.597510 GTGGGGTCCAAGTGTGGC 60.598 66.667 0.00 0.00 45.54 5.01
276 277 2.776526 TGGGGTCCAAGTGTGGCT 60.777 61.111 0.00 0.00 45.54 4.75
277 278 2.391130 TGGGGTCCAAGTGTGGCTT 61.391 57.895 0.00 0.00 45.54 4.35
285 286 0.883833 CAAGTGTGGCTTGCCTAAGG 59.116 55.000 13.18 0.00 46.68 2.69
286 287 0.478507 AAGTGTGGCTTGCCTAAGGT 59.521 50.000 13.18 0.00 35.80 3.50
287 288 0.250901 AGTGTGGCTTGCCTAAGGTG 60.251 55.000 13.18 0.00 34.40 4.00
288 289 0.537371 GTGTGGCTTGCCTAAGGTGT 60.537 55.000 13.18 0.00 34.40 4.16
289 290 1.060729 TGTGGCTTGCCTAAGGTGTA 58.939 50.000 13.18 0.00 34.40 2.90
290 291 1.422024 TGTGGCTTGCCTAAGGTGTAA 59.578 47.619 13.18 0.00 34.40 2.41
291 292 1.810755 GTGGCTTGCCTAAGGTGTAAC 59.189 52.381 13.18 0.00 34.40 2.50
292 293 1.702957 TGGCTTGCCTAAGGTGTAACT 59.297 47.619 13.18 0.00 36.74 2.24
293 294 2.107552 TGGCTTGCCTAAGGTGTAACTT 59.892 45.455 13.18 0.00 36.74 2.66
294 295 2.488153 GGCTTGCCTAAGGTGTAACTTG 59.512 50.000 4.11 0.00 36.74 3.16
295 296 3.408634 GCTTGCCTAAGGTGTAACTTGA 58.591 45.455 0.00 0.00 36.74 3.02
296 297 3.818773 GCTTGCCTAAGGTGTAACTTGAA 59.181 43.478 0.00 0.00 36.74 2.69
297 298 4.320275 GCTTGCCTAAGGTGTAACTTGAAC 60.320 45.833 0.00 0.00 36.74 3.18
298 299 3.746940 TGCCTAAGGTGTAACTTGAACC 58.253 45.455 0.00 0.00 36.74 3.62
299 300 3.136809 TGCCTAAGGTGTAACTTGAACCA 59.863 43.478 0.00 0.00 36.37 3.67
300 301 4.139038 GCCTAAGGTGTAACTTGAACCAA 58.861 43.478 0.00 0.00 36.37 3.67
301 302 4.581409 GCCTAAGGTGTAACTTGAACCAAA 59.419 41.667 0.00 0.00 36.37 3.28
302 303 5.506815 GCCTAAGGTGTAACTTGAACCAAAC 60.507 44.000 0.00 0.00 36.37 2.93
303 304 5.591067 CCTAAGGTGTAACTTGAACCAAACA 59.409 40.000 0.00 0.00 36.37 2.83
304 305 4.976224 AGGTGTAACTTGAACCAAACAC 57.024 40.909 0.00 0.00 36.37 3.32
305 306 4.595986 AGGTGTAACTTGAACCAAACACT 58.404 39.130 10.84 0.00 34.78 3.55
306 307 4.638865 AGGTGTAACTTGAACCAAACACTC 59.361 41.667 10.84 4.55 34.78 3.51
307 308 4.396790 GGTGTAACTTGAACCAAACACTCA 59.603 41.667 10.84 0.00 34.78 3.41
308 309 5.329493 GTGTAACTTGAACCAAACACTCAC 58.671 41.667 0.00 0.00 32.90 3.51
309 310 4.396790 TGTAACTTGAACCAAACACTCACC 59.603 41.667 0.00 0.00 0.00 4.02
310 311 3.366052 ACTTGAACCAAACACTCACCT 57.634 42.857 0.00 0.00 0.00 4.00
311 312 4.497291 ACTTGAACCAAACACTCACCTA 57.503 40.909 0.00 0.00 0.00 3.08
312 313 4.850680 ACTTGAACCAAACACTCACCTAA 58.149 39.130 0.00 0.00 0.00 2.69
313 314 5.258051 ACTTGAACCAAACACTCACCTAAA 58.742 37.500 0.00 0.00 0.00 1.85
314 315 5.891551 ACTTGAACCAAACACTCACCTAAAT 59.108 36.000 0.00 0.00 0.00 1.40
315 316 6.379988 ACTTGAACCAAACACTCACCTAAATT 59.620 34.615 0.00 0.00 0.00 1.82
316 317 7.558444 ACTTGAACCAAACACTCACCTAAATTA 59.442 33.333 0.00 0.00 0.00 1.40
317 318 7.504924 TGAACCAAACACTCACCTAAATTAG 57.495 36.000 0.00 0.00 0.00 1.73
318 319 7.057894 TGAACCAAACACTCACCTAAATTAGT 58.942 34.615 0.00 0.00 0.00 2.24
319 320 7.227910 TGAACCAAACACTCACCTAAATTAGTC 59.772 37.037 0.00 0.00 0.00 2.59
320 321 6.597562 ACCAAACACTCACCTAAATTAGTCA 58.402 36.000 0.00 0.00 0.00 3.41
321 322 7.057894 ACCAAACACTCACCTAAATTAGTCAA 58.942 34.615 0.00 0.00 0.00 3.18
322 323 7.558444 ACCAAACACTCACCTAAATTAGTCAAA 59.442 33.333 0.00 0.00 0.00 2.69
323 324 7.860872 CCAAACACTCACCTAAATTAGTCAAAC 59.139 37.037 0.00 0.00 0.00 2.93
324 325 8.621286 CAAACACTCACCTAAATTAGTCAAACT 58.379 33.333 0.00 0.00 0.00 2.66
325 326 8.747538 AACACTCACCTAAATTAGTCAAACTT 57.252 30.769 0.00 0.00 0.00 2.66
326 327 8.154649 ACACTCACCTAAATTAGTCAAACTTG 57.845 34.615 0.00 0.00 0.00 3.16
327 328 7.078228 CACTCACCTAAATTAGTCAAACTTGC 58.922 38.462 0.00 0.00 0.00 4.01
328 329 6.998673 ACTCACCTAAATTAGTCAAACTTGCT 59.001 34.615 0.00 0.00 0.00 3.91
329 330 7.502561 ACTCACCTAAATTAGTCAAACTTGCTT 59.497 33.333 0.00 0.00 0.00 3.91
330 331 8.911918 TCACCTAAATTAGTCAAACTTGCTTA 57.088 30.769 0.00 0.00 0.00 3.09
331 332 8.780249 TCACCTAAATTAGTCAAACTTGCTTAC 58.220 33.333 0.00 0.00 0.00 2.34
332 333 8.021396 CACCTAAATTAGTCAAACTTGCTTACC 58.979 37.037 0.00 0.00 0.00 2.85
333 334 7.942894 ACCTAAATTAGTCAAACTTGCTTACCT 59.057 33.333 0.00 0.00 0.00 3.08
334 335 8.793592 CCTAAATTAGTCAAACTTGCTTACCTT 58.206 33.333 0.00 0.00 0.00 3.50
339 340 8.741603 TTAGTCAAACTTGCTTACCTTTAAGT 57.258 30.769 0.00 0.00 37.59 2.24
340 341 7.027778 AGTCAAACTTGCTTACCTTTAAGTG 57.972 36.000 0.00 0.00 37.59 3.16
341 342 6.602009 AGTCAAACTTGCTTACCTTTAAGTGT 59.398 34.615 0.00 0.00 37.59 3.55
342 343 6.691388 GTCAAACTTGCTTACCTTTAAGTGTG 59.309 38.462 0.00 0.00 38.91 3.82
343 344 5.767816 AACTTGCTTACCTTTAAGTGTGG 57.232 39.130 0.00 0.00 37.59 4.17
344 345 3.568430 ACTTGCTTACCTTTAAGTGTGGC 59.432 43.478 0.00 0.42 37.59 5.01
345 346 3.216187 TGCTTACCTTTAAGTGTGGCA 57.784 42.857 0.00 0.00 37.59 4.92
346 347 3.556999 TGCTTACCTTTAAGTGTGGCAA 58.443 40.909 0.00 0.00 37.59 4.52
347 348 3.316868 TGCTTACCTTTAAGTGTGGCAAC 59.683 43.478 0.00 0.00 37.59 4.17
348 349 3.305131 GCTTACCTTTAAGTGTGGCAACC 60.305 47.826 0.00 0.00 37.59 3.77
349 350 2.748209 ACCTTTAAGTGTGGCAACCT 57.252 45.000 0.00 0.00 0.00 3.50
350 351 3.026707 ACCTTTAAGTGTGGCAACCTT 57.973 42.857 0.00 0.00 0.00 3.50
351 352 3.371034 ACCTTTAAGTGTGGCAACCTTT 58.629 40.909 5.37 0.00 0.00 3.11
352 353 3.132111 ACCTTTAAGTGTGGCAACCTTTG 59.868 43.478 5.37 0.00 0.00 2.77
353 354 3.492482 CCTTTAAGTGTGGCAACCTTTGG 60.492 47.826 5.37 3.46 0.00 3.28
363 364 3.452755 GCAACCTTTGGCAAAGTTAGT 57.547 42.857 31.68 22.14 36.77 2.24
364 365 3.381045 GCAACCTTTGGCAAAGTTAGTC 58.619 45.455 31.68 16.47 36.77 2.59
365 366 3.628017 CAACCTTTGGCAAAGTTAGTCG 58.372 45.455 31.68 20.34 36.77 4.18
366 367 1.607148 ACCTTTGGCAAAGTTAGTCGC 59.393 47.619 31.68 0.00 36.77 5.19
367 368 1.606668 CCTTTGGCAAAGTTAGTCGCA 59.393 47.619 31.68 0.20 36.77 5.10
368 369 2.034053 CCTTTGGCAAAGTTAGTCGCAA 59.966 45.455 31.68 0.00 36.77 4.85
369 370 3.490078 CCTTTGGCAAAGTTAGTCGCAAA 60.490 43.478 31.68 0.00 36.77 3.68
370 371 2.766970 TGGCAAAGTTAGTCGCAAAC 57.233 45.000 0.00 0.00 0.00 2.93
371 372 1.335496 TGGCAAAGTTAGTCGCAAACC 59.665 47.619 0.00 0.00 0.00 3.27
372 373 1.335496 GGCAAAGTTAGTCGCAAACCA 59.665 47.619 0.00 0.00 0.00 3.67
373 374 2.223618 GGCAAAGTTAGTCGCAAACCAA 60.224 45.455 0.00 0.00 0.00 3.67
374 375 3.440228 GCAAAGTTAGTCGCAAACCAAA 58.560 40.909 0.00 0.00 0.00 3.28
375 376 3.242016 GCAAAGTTAGTCGCAAACCAAAC 59.758 43.478 0.00 0.00 0.00 2.93
376 377 4.416620 CAAAGTTAGTCGCAAACCAAACA 58.583 39.130 0.00 0.00 30.35 2.83
377 378 4.705337 AAGTTAGTCGCAAACCAAACAA 57.295 36.364 0.00 0.00 30.35 2.83
378 379 4.023739 AGTTAGTCGCAAACCAAACAAC 57.976 40.909 0.00 0.00 30.35 3.32
379 380 3.110358 GTTAGTCGCAAACCAAACAACC 58.890 45.455 0.00 0.00 0.00 3.77
380 381 0.458260 AGTCGCAAACCAAACAACCC 59.542 50.000 0.00 0.00 0.00 4.11
381 382 0.528901 GTCGCAAACCAAACAACCCC 60.529 55.000 0.00 0.00 0.00 4.95
382 383 0.684805 TCGCAAACCAAACAACCCCT 60.685 50.000 0.00 0.00 0.00 4.79
383 384 1.033574 CGCAAACCAAACAACCCCTA 58.966 50.000 0.00 0.00 0.00 3.53
384 385 1.000717 CGCAAACCAAACAACCCCTAG 60.001 52.381 0.00 0.00 0.00 3.02
385 386 2.036387 GCAAACCAAACAACCCCTAGT 58.964 47.619 0.00 0.00 0.00 2.57
386 387 2.223947 GCAAACCAAACAACCCCTAGTG 60.224 50.000 0.00 0.00 0.00 2.74
387 388 3.028130 CAAACCAAACAACCCCTAGTGT 58.972 45.455 0.00 0.00 0.00 3.55
388 389 2.651382 ACCAAACAACCCCTAGTGTC 57.349 50.000 0.00 0.00 0.00 3.67
389 390 1.847737 ACCAAACAACCCCTAGTGTCA 59.152 47.619 0.00 0.00 0.00 3.58
390 391 2.158667 ACCAAACAACCCCTAGTGTCAG 60.159 50.000 0.00 0.00 0.00 3.51
391 392 1.880027 CAAACAACCCCTAGTGTCAGC 59.120 52.381 0.00 0.00 0.00 4.26
392 393 0.034896 AACAACCCCTAGTGTCAGCG 59.965 55.000 0.00 0.00 0.00 5.18
393 394 1.119574 ACAACCCCTAGTGTCAGCGT 61.120 55.000 0.00 0.00 0.00 5.07
394 395 0.034896 CAACCCCTAGTGTCAGCGTT 59.965 55.000 0.00 0.00 0.00 4.84
395 396 0.320697 AACCCCTAGTGTCAGCGTTC 59.679 55.000 0.00 0.00 0.00 3.95
396 397 0.542232 ACCCCTAGTGTCAGCGTTCT 60.542 55.000 0.00 0.00 0.00 3.01
397 398 0.108615 CCCCTAGTGTCAGCGTTCTG 60.109 60.000 0.00 0.00 41.67 3.02
398 399 0.108615 CCCTAGTGTCAGCGTTCTGG 60.109 60.000 0.00 0.00 40.69 3.86
399 400 0.603569 CCTAGTGTCAGCGTTCTGGT 59.396 55.000 0.00 0.00 40.69 4.00
401 402 0.317160 TAGTGTCAGCGTTCTGGTGG 59.683 55.000 0.00 0.00 46.16 4.61
402 403 1.961277 GTGTCAGCGTTCTGGTGGG 60.961 63.158 0.00 0.00 46.16 4.61
403 404 2.426023 GTCAGCGTTCTGGTGGGT 59.574 61.111 0.00 0.00 46.16 4.51
404 405 1.961277 GTCAGCGTTCTGGTGGGTG 60.961 63.158 0.00 0.00 46.16 4.61
405 406 2.669569 CAGCGTTCTGGTGGGTGG 60.670 66.667 0.00 0.00 42.42 4.61
406 407 3.953775 AGCGTTCTGGTGGGTGGG 61.954 66.667 0.00 0.00 0.00 4.61
445 448 2.049433 CGTCTCGGCCAAGTCGTT 60.049 61.111 2.24 0.00 30.45 3.85
461 464 2.096417 GTCGTTACCGTACACGTACACT 60.096 50.000 8.02 0.00 37.66 3.55
536 569 6.505272 AGCCGTCAGATTAGTAGTTTGATAC 58.495 40.000 0.00 0.00 0.00 2.24
666 705 2.825532 TGTCTTGATTTTAGCCCAAGCC 59.174 45.455 0.00 0.00 41.25 4.35
675 714 1.854345 TAGCCCAAGCCCGCCTTTTA 61.854 55.000 0.00 0.00 41.25 1.52
1076 1139 2.169789 CGCGCTTCATCTCCACCAG 61.170 63.158 5.56 0.00 0.00 4.00
1099 1162 0.327924 ATTCGGTGCAGACATTCCCA 59.672 50.000 0.00 0.00 0.00 4.37
1158 1228 2.202690 CGCCATGGTCGCGTTCTA 60.203 61.111 14.67 0.00 44.55 2.10
1200 1273 0.673437 CGCACCTTGTTGTTTGGGAT 59.327 50.000 0.00 0.00 0.00 3.85
1465 1575 7.197017 CGATATGTGCTCTAGTCTACAACTTT 58.803 38.462 0.00 0.00 39.55 2.66
1592 1702 6.915544 TGACTTGAGCTCTAATTGCTTATG 57.084 37.500 16.19 0.00 41.30 1.90
2140 2334 7.386573 TGTGCTCGATCAAACTTCAAGTAATAA 59.613 33.333 0.00 0.00 0.00 1.40
2313 2507 0.702316 TCTTAAAGGAAGGGGCCACC 59.298 55.000 0.00 0.57 35.67 4.61
2459 2667 4.574599 AAGCTTGACAATTCCTTGTGTC 57.425 40.909 0.00 0.00 45.57 3.67
2553 2761 3.745975 GCTTTGTGGTTTAATTGCCTTCC 59.254 43.478 0.00 0.00 0.00 3.46
2644 2853 4.888239 TCTAGTCTCTAAATTGGTCTCCGG 59.112 45.833 0.00 0.00 0.00 5.14
3049 3269 1.823470 GCTTGGTCACACAGTGGCA 60.823 57.895 5.31 0.00 40.26 4.92
3156 3376 2.039879 GGAAAGTTGTTCCTAGGCCTCA 59.960 50.000 9.68 0.00 35.73 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.752354 TGTTTTTCATATGGGTCGGCAG 59.248 45.455 2.13 0.00 0.00 4.85
2 3 2.752354 CTGTTTTTCATATGGGTCGGCA 59.248 45.455 2.13 0.00 0.00 5.69
6 7 2.099098 CGCCCTGTTTTTCATATGGGTC 59.901 50.000 2.13 0.00 37.09 4.46
9 10 2.099098 GTCCGCCCTGTTTTTCATATGG 59.901 50.000 2.13 0.00 0.00 2.74
10 11 2.223249 CGTCCGCCCTGTTTTTCATATG 60.223 50.000 0.00 0.00 0.00 1.78
11 12 2.014128 CGTCCGCCCTGTTTTTCATAT 58.986 47.619 0.00 0.00 0.00 1.78
12 13 1.444836 CGTCCGCCCTGTTTTTCATA 58.555 50.000 0.00 0.00 0.00 2.15
13 14 1.862602 GCGTCCGCCCTGTTTTTCAT 61.863 55.000 0.00 0.00 34.56 2.57
14 15 2.548295 GCGTCCGCCCTGTTTTTCA 61.548 57.895 0.00 0.00 34.56 2.69
15 16 2.254350 GCGTCCGCCCTGTTTTTC 59.746 61.111 0.00 0.00 34.56 2.29
42 43 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
43 44 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
68 69 2.413837 CCAAACAGACGGAGATTTCGT 58.586 47.619 0.00 0.00 44.03 3.85
69 70 1.732259 CCCAAACAGACGGAGATTTCG 59.268 52.381 0.00 0.00 0.00 3.46
70 71 2.742589 GACCCAAACAGACGGAGATTTC 59.257 50.000 0.00 0.00 0.00 2.17
71 72 2.779506 GACCCAAACAGACGGAGATTT 58.220 47.619 0.00 0.00 0.00 2.17
72 73 1.337823 CGACCCAAACAGACGGAGATT 60.338 52.381 0.00 0.00 0.00 2.40
73 74 0.246635 CGACCCAAACAGACGGAGAT 59.753 55.000 0.00 0.00 0.00 2.75
74 75 1.663739 CGACCCAAACAGACGGAGA 59.336 57.895 0.00 0.00 0.00 3.71
75 76 1.374252 CCGACCCAAACAGACGGAG 60.374 63.158 0.00 0.00 45.31 4.63
76 77 2.738480 CCGACCCAAACAGACGGA 59.262 61.111 0.00 0.00 45.31 4.69
77 78 3.047877 GCCGACCCAAACAGACGG 61.048 66.667 0.00 0.00 45.26 4.79
78 79 3.047877 GGCCGACCCAAACAGACG 61.048 66.667 0.00 0.00 0.00 4.18
88 89 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
89 90 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
92 93 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
93 94 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
94 95 1.002087 AGTTAGAGCAACTCCAACGGG 59.998 52.381 1.24 0.00 44.48 5.28
95 96 2.457366 AGTTAGAGCAACTCCAACGG 57.543 50.000 1.24 0.00 44.48 4.44
96 97 3.512680 CCTAGTTAGAGCAACTCCAACG 58.487 50.000 1.24 0.00 44.48 4.10
97 98 3.369576 CCCCTAGTTAGAGCAACTCCAAC 60.370 52.174 0.00 0.00 44.48 3.77
98 99 2.838202 CCCCTAGTTAGAGCAACTCCAA 59.162 50.000 0.00 0.00 44.48 3.53
99 100 2.467880 CCCCTAGTTAGAGCAACTCCA 58.532 52.381 0.00 0.00 44.48 3.86
100 101 1.139256 GCCCCTAGTTAGAGCAACTCC 59.861 57.143 0.00 0.00 44.48 3.85
101 102 2.112190 AGCCCCTAGTTAGAGCAACTC 58.888 52.381 0.00 0.00 44.48 3.01
103 104 1.555533 ACAGCCCCTAGTTAGAGCAAC 59.444 52.381 0.00 0.00 37.41 4.17
104 105 1.952621 ACAGCCCCTAGTTAGAGCAA 58.047 50.000 0.00 0.00 0.00 3.91
105 106 1.952621 AACAGCCCCTAGTTAGAGCA 58.047 50.000 0.00 0.00 0.00 4.26
106 107 2.633488 CAAACAGCCCCTAGTTAGAGC 58.367 52.381 0.00 0.00 0.00 4.09
107 108 2.572104 ACCAAACAGCCCCTAGTTAGAG 59.428 50.000 0.00 0.00 0.00 2.43
108 109 2.627933 ACCAAACAGCCCCTAGTTAGA 58.372 47.619 0.00 0.00 0.00 2.10
109 110 3.009143 AGAACCAAACAGCCCCTAGTTAG 59.991 47.826 0.00 0.00 0.00 2.34
110 111 2.983898 AGAACCAAACAGCCCCTAGTTA 59.016 45.455 0.00 0.00 0.00 2.24
111 112 1.780919 AGAACCAAACAGCCCCTAGTT 59.219 47.619 0.00 0.00 0.00 2.24
112 113 1.446016 AGAACCAAACAGCCCCTAGT 58.554 50.000 0.00 0.00 0.00 2.57
113 114 2.092914 CCTAGAACCAAACAGCCCCTAG 60.093 54.545 0.00 0.00 0.00 3.02
114 115 1.913419 CCTAGAACCAAACAGCCCCTA 59.087 52.381 0.00 0.00 0.00 3.53
115 116 0.698818 CCTAGAACCAAACAGCCCCT 59.301 55.000 0.00 0.00 0.00 4.79
116 117 0.965866 GCCTAGAACCAAACAGCCCC 60.966 60.000 0.00 0.00 0.00 5.80
117 118 0.965866 GGCCTAGAACCAAACAGCCC 60.966 60.000 0.00 0.00 32.68 5.19
118 119 0.038310 AGGCCTAGAACCAAACAGCC 59.962 55.000 1.29 0.00 39.25 4.85
119 120 2.633488 CTAGGCCTAGAACCAAACAGC 58.367 52.381 32.79 0.00 35.21 4.40
120 121 2.027192 TGCTAGGCCTAGAACCAAACAG 60.027 50.000 38.74 15.24 35.21 3.16
121 122 1.982226 TGCTAGGCCTAGAACCAAACA 59.018 47.619 38.74 23.41 35.21 2.83
122 123 2.781681 TGCTAGGCCTAGAACCAAAC 57.218 50.000 38.74 21.26 35.21 2.93
123 124 3.620488 CAATGCTAGGCCTAGAACCAAA 58.380 45.455 38.74 18.21 35.21 3.28
124 125 2.683742 GCAATGCTAGGCCTAGAACCAA 60.684 50.000 38.74 19.81 35.21 3.67
125 126 1.134098 GCAATGCTAGGCCTAGAACCA 60.134 52.381 38.74 27.60 35.21 3.67
126 127 1.598882 GCAATGCTAGGCCTAGAACC 58.401 55.000 38.74 23.28 35.21 3.62
127 128 1.598882 GGCAATGCTAGGCCTAGAAC 58.401 55.000 38.74 23.96 46.74 3.01
134 135 3.062042 GCAAAATATGGCAATGCTAGGC 58.938 45.455 4.82 0.00 34.29 3.93
145 146 5.392286 GCAAAAATGTGTGGCAAAATATGG 58.608 37.500 0.00 0.00 0.00 2.74
146 147 5.048921 TGGCAAAAATGTGTGGCAAAATATG 60.049 36.000 0.00 0.00 46.13 1.78
147 148 5.068636 TGGCAAAAATGTGTGGCAAAATAT 58.931 33.333 0.00 0.00 46.13 1.28
148 149 4.454678 TGGCAAAAATGTGTGGCAAAATA 58.545 34.783 0.00 0.00 46.13 1.40
149 150 3.285484 TGGCAAAAATGTGTGGCAAAAT 58.715 36.364 0.00 0.00 46.13 1.82
150 151 2.715046 TGGCAAAAATGTGTGGCAAAA 58.285 38.095 0.00 0.00 46.13 2.44
151 152 2.408271 TGGCAAAAATGTGTGGCAAA 57.592 40.000 0.00 0.00 46.13 3.68
154 155 0.587768 GCTTGGCAAAAATGTGTGGC 59.412 50.000 0.00 0.00 40.55 5.01
155 156 2.243602 AGCTTGGCAAAAATGTGTGG 57.756 45.000 0.00 0.00 0.00 4.17
156 157 2.286536 GCAAGCTTGGCAAAAATGTGTG 60.287 45.455 27.10 0.00 0.00 3.82
157 158 1.941975 GCAAGCTTGGCAAAAATGTGT 59.058 42.857 27.10 0.00 0.00 3.72
158 159 2.673976 GCAAGCTTGGCAAAAATGTG 57.326 45.000 27.10 0.00 0.00 3.21
168 169 4.943705 TGAACTAATCTTAGGCAAGCTTGG 59.056 41.667 27.10 10.71 35.08 3.61
169 170 6.072508 TGTTGAACTAATCTTAGGCAAGCTTG 60.073 38.462 22.44 22.44 33.19 4.01
170 171 6.003950 TGTTGAACTAATCTTAGGCAAGCTT 58.996 36.000 0.00 0.00 33.19 3.74
171 172 5.560724 TGTTGAACTAATCTTAGGCAAGCT 58.439 37.500 0.00 0.00 33.19 3.74
172 173 5.880054 TGTTGAACTAATCTTAGGCAAGC 57.120 39.130 0.00 0.00 33.19 4.01
173 174 9.132521 CATTTTGTTGAACTAATCTTAGGCAAG 57.867 33.333 0.00 0.00 33.19 4.01
174 175 8.855110 TCATTTTGTTGAACTAATCTTAGGCAA 58.145 29.630 0.00 3.53 35.08 4.52
175 176 8.402798 TCATTTTGTTGAACTAATCTTAGGCA 57.597 30.769 0.00 0.00 35.08 4.75
176 177 8.730680 TCTCATTTTGTTGAACTAATCTTAGGC 58.269 33.333 0.00 0.00 35.08 3.93
178 179 9.766277 GCTCTCATTTTGTTGAACTAATCTTAG 57.234 33.333 0.00 0.00 36.82 2.18
179 180 8.730680 GGCTCTCATTTTGTTGAACTAATCTTA 58.269 33.333 0.00 0.00 0.00 2.10
180 181 7.231317 TGGCTCTCATTTTGTTGAACTAATCTT 59.769 33.333 0.00 0.00 0.00 2.40
181 182 6.716628 TGGCTCTCATTTTGTTGAACTAATCT 59.283 34.615 0.00 0.00 0.00 2.40
182 183 6.803807 GTGGCTCTCATTTTGTTGAACTAATC 59.196 38.462 0.00 0.00 0.00 1.75
183 184 6.265196 TGTGGCTCTCATTTTGTTGAACTAAT 59.735 34.615 0.00 0.00 0.00 1.73
184 185 5.592282 TGTGGCTCTCATTTTGTTGAACTAA 59.408 36.000 0.00 0.00 0.00 2.24
185 186 5.129634 TGTGGCTCTCATTTTGTTGAACTA 58.870 37.500 0.00 0.00 0.00 2.24
186 187 3.953612 TGTGGCTCTCATTTTGTTGAACT 59.046 39.130 0.00 0.00 0.00 3.01
187 188 4.305989 TGTGGCTCTCATTTTGTTGAAC 57.694 40.909 0.00 0.00 0.00 3.18
188 189 4.402155 ACTTGTGGCTCTCATTTTGTTGAA 59.598 37.500 0.00 0.00 0.00 2.69
189 190 3.953612 ACTTGTGGCTCTCATTTTGTTGA 59.046 39.130 0.00 0.00 0.00 3.18
190 191 4.311816 ACTTGTGGCTCTCATTTTGTTG 57.688 40.909 0.00 0.00 0.00 3.33
191 192 4.441913 CCAACTTGTGGCTCTCATTTTGTT 60.442 41.667 0.00 0.00 41.72 2.83
192 193 3.068590 CCAACTTGTGGCTCTCATTTTGT 59.931 43.478 0.00 0.00 41.72 2.83
193 194 3.645884 CCAACTTGTGGCTCTCATTTTG 58.354 45.455 0.00 0.00 41.72 2.44
205 206 1.956477 ACTTAGGCTTGCCAACTTGTG 59.044 47.619 14.54 0.00 0.00 3.33
206 207 1.956477 CACTTAGGCTTGCCAACTTGT 59.044 47.619 14.54 2.71 0.00 3.16
207 208 2.229792 TCACTTAGGCTTGCCAACTTG 58.770 47.619 14.54 5.82 0.00 3.16
208 209 2.656947 TCACTTAGGCTTGCCAACTT 57.343 45.000 14.54 0.00 0.00 2.66
209 210 2.656947 TTCACTTAGGCTTGCCAACT 57.343 45.000 14.54 0.00 0.00 3.16
210 211 3.084786 AGATTCACTTAGGCTTGCCAAC 58.915 45.455 14.54 0.00 0.00 3.77
211 212 3.439857 AGATTCACTTAGGCTTGCCAA 57.560 42.857 14.54 5.54 0.00 4.52
212 213 3.084039 CAAGATTCACTTAGGCTTGCCA 58.916 45.455 14.54 0.00 37.03 4.92
213 214 3.772060 CAAGATTCACTTAGGCTTGCC 57.228 47.619 2.97 2.97 37.03 4.52
215 216 3.084039 TGGCAAGATTCACTTAGGCTTG 58.916 45.455 0.00 0.00 39.06 4.01
216 217 3.084786 GTGGCAAGATTCACTTAGGCTT 58.915 45.455 0.00 0.00 37.03 4.35
217 218 2.040278 TGTGGCAAGATTCACTTAGGCT 59.960 45.455 0.00 0.00 37.03 4.58
218 219 2.436417 TGTGGCAAGATTCACTTAGGC 58.564 47.619 0.00 0.00 37.03 3.93
219 220 5.649782 AAATGTGGCAAGATTCACTTAGG 57.350 39.130 0.00 0.00 37.03 2.69
240 241 6.013379 ACCCCACATGTCATACACATAAAAA 58.987 36.000 0.00 0.00 44.60 1.94
241 242 5.575157 ACCCCACATGTCATACACATAAAA 58.425 37.500 0.00 0.00 44.60 1.52
242 243 5.186256 ACCCCACATGTCATACACATAAA 57.814 39.130 0.00 0.00 44.60 1.40
243 244 4.384757 GGACCCCACATGTCATACACATAA 60.385 45.833 0.00 0.00 44.60 1.90
244 245 3.135712 GGACCCCACATGTCATACACATA 59.864 47.826 0.00 0.00 44.60 2.29
246 247 1.280710 GGACCCCACATGTCATACACA 59.719 52.381 0.00 0.00 40.18 3.72
247 248 1.280710 TGGACCCCACATGTCATACAC 59.719 52.381 0.00 0.00 34.36 2.90
248 249 1.662686 TGGACCCCACATGTCATACA 58.337 50.000 0.00 0.00 34.36 2.29
249 250 2.026262 ACTTGGACCCCACATGTCATAC 60.026 50.000 0.00 0.00 34.36 2.39
250 251 2.026356 CACTTGGACCCCACATGTCATA 60.026 50.000 0.00 0.00 34.36 2.15
251 252 1.075601 ACTTGGACCCCACATGTCAT 58.924 50.000 0.00 0.00 34.36 3.06
252 253 0.110295 CACTTGGACCCCACATGTCA 59.890 55.000 0.00 0.00 34.36 3.58
253 254 0.110486 ACACTTGGACCCCACATGTC 59.890 55.000 0.00 0.00 29.08 3.06
254 255 0.178992 CACACTTGGACCCCACATGT 60.179 55.000 0.00 0.00 33.64 3.21
255 256 2.644887 CACACTTGGACCCCACATG 58.355 57.895 0.00 0.00 30.78 3.21
267 268 0.478507 ACCTTAGGCAAGCCACACTT 59.521 50.000 14.40 0.00 40.05 3.16
268 269 0.250901 CACCTTAGGCAAGCCACACT 60.251 55.000 14.40 0.00 38.92 3.55
269 270 0.537371 ACACCTTAGGCAAGCCACAC 60.537 55.000 14.40 0.00 38.92 3.82
270 271 1.060729 TACACCTTAGGCAAGCCACA 58.939 50.000 14.40 0.00 38.92 4.17
271 272 1.810755 GTTACACCTTAGGCAAGCCAC 59.189 52.381 14.40 0.00 38.92 5.01
272 273 1.702957 AGTTACACCTTAGGCAAGCCA 59.297 47.619 14.40 0.00 38.92 4.75
273 274 2.488153 CAAGTTACACCTTAGGCAAGCC 59.512 50.000 2.02 2.02 0.00 4.35
274 275 3.408634 TCAAGTTACACCTTAGGCAAGC 58.591 45.455 0.00 0.00 0.00 4.01
275 276 4.215613 GGTTCAAGTTACACCTTAGGCAAG 59.784 45.833 0.00 0.00 0.00 4.01
276 277 4.139038 GGTTCAAGTTACACCTTAGGCAA 58.861 43.478 0.00 0.00 0.00 4.52
277 278 3.136809 TGGTTCAAGTTACACCTTAGGCA 59.863 43.478 0.00 0.00 0.00 4.75
278 279 3.746940 TGGTTCAAGTTACACCTTAGGC 58.253 45.455 0.00 0.00 0.00 3.93
279 280 5.591067 TGTTTGGTTCAAGTTACACCTTAGG 59.409 40.000 0.00 0.00 0.00 2.69
280 281 6.317893 AGTGTTTGGTTCAAGTTACACCTTAG 59.682 38.462 0.00 0.00 34.86 2.18
281 282 6.181908 AGTGTTTGGTTCAAGTTACACCTTA 58.818 36.000 0.00 0.00 34.86 2.69
282 283 5.014202 AGTGTTTGGTTCAAGTTACACCTT 58.986 37.500 0.00 0.00 34.86 3.50
283 284 4.595986 AGTGTTTGGTTCAAGTTACACCT 58.404 39.130 0.00 0.00 34.86 4.00
284 285 4.396790 TGAGTGTTTGGTTCAAGTTACACC 59.603 41.667 0.00 0.00 34.86 4.16
285 286 5.329493 GTGAGTGTTTGGTTCAAGTTACAC 58.671 41.667 0.00 0.00 34.66 2.90
286 287 4.396790 GGTGAGTGTTTGGTTCAAGTTACA 59.603 41.667 0.00 0.00 0.00 2.41
287 288 4.638865 AGGTGAGTGTTTGGTTCAAGTTAC 59.361 41.667 0.00 0.00 0.00 2.50
288 289 4.850680 AGGTGAGTGTTTGGTTCAAGTTA 58.149 39.130 0.00 0.00 0.00 2.24
289 290 3.697166 AGGTGAGTGTTTGGTTCAAGTT 58.303 40.909 0.00 0.00 0.00 2.66
290 291 3.366052 AGGTGAGTGTTTGGTTCAAGT 57.634 42.857 0.00 0.00 0.00 3.16
291 292 5.828299 TTTAGGTGAGTGTTTGGTTCAAG 57.172 39.130 0.00 0.00 0.00 3.02
292 293 6.783708 AATTTAGGTGAGTGTTTGGTTCAA 57.216 33.333 0.00 0.00 0.00 2.69
293 294 7.057894 ACTAATTTAGGTGAGTGTTTGGTTCA 58.942 34.615 8.26 0.00 0.00 3.18
294 295 7.227910 TGACTAATTTAGGTGAGTGTTTGGTTC 59.772 37.037 8.26 0.00 0.00 3.62
295 296 7.057894 TGACTAATTTAGGTGAGTGTTTGGTT 58.942 34.615 8.26 0.00 0.00 3.67
296 297 6.597562 TGACTAATTTAGGTGAGTGTTTGGT 58.402 36.000 8.26 0.00 0.00 3.67
297 298 7.504924 TTGACTAATTTAGGTGAGTGTTTGG 57.495 36.000 8.26 0.00 0.00 3.28
298 299 8.621286 AGTTTGACTAATTTAGGTGAGTGTTTG 58.379 33.333 8.26 0.00 0.00 2.93
299 300 8.747538 AGTTTGACTAATTTAGGTGAGTGTTT 57.252 30.769 8.26 0.00 0.00 2.83
300 301 8.621286 CAAGTTTGACTAATTTAGGTGAGTGTT 58.379 33.333 8.26 0.00 0.00 3.32
301 302 7.255139 GCAAGTTTGACTAATTTAGGTGAGTGT 60.255 37.037 8.26 0.00 0.00 3.55
302 303 7.041098 AGCAAGTTTGACTAATTTAGGTGAGTG 60.041 37.037 8.26 0.00 0.00 3.51
303 304 6.998673 AGCAAGTTTGACTAATTTAGGTGAGT 59.001 34.615 8.26 0.00 0.00 3.41
304 305 7.440523 AGCAAGTTTGACTAATTTAGGTGAG 57.559 36.000 8.26 0.00 0.00 3.51
305 306 7.817418 AAGCAAGTTTGACTAATTTAGGTGA 57.183 32.000 8.26 0.00 0.00 4.02
306 307 8.021396 GGTAAGCAAGTTTGACTAATTTAGGTG 58.979 37.037 8.26 0.00 0.00 4.00
307 308 7.942894 AGGTAAGCAAGTTTGACTAATTTAGGT 59.057 33.333 8.26 0.00 0.00 3.08
308 309 8.336801 AGGTAAGCAAGTTTGACTAATTTAGG 57.663 34.615 8.26 0.00 0.00 2.69
313 314 9.350951 ACTTAAAGGTAAGCAAGTTTGACTAAT 57.649 29.630 0.00 0.00 40.48 1.73
314 315 8.617809 CACTTAAAGGTAAGCAAGTTTGACTAA 58.382 33.333 0.00 0.00 40.48 2.24
315 316 7.771826 ACACTTAAAGGTAAGCAAGTTTGACTA 59.228 33.333 0.00 0.00 40.48 2.59
316 317 6.602009 ACACTTAAAGGTAAGCAAGTTTGACT 59.398 34.615 0.00 0.00 40.48 3.41
317 318 6.691388 CACACTTAAAGGTAAGCAAGTTTGAC 59.309 38.462 0.00 0.00 40.48 3.18
318 319 6.183360 CCACACTTAAAGGTAAGCAAGTTTGA 60.183 38.462 0.00 0.00 40.48 2.69
319 320 5.977129 CCACACTTAAAGGTAAGCAAGTTTG 59.023 40.000 0.00 0.00 40.48 2.93
320 321 5.451381 GCCACACTTAAAGGTAAGCAAGTTT 60.451 40.000 0.00 0.00 40.48 2.66
321 322 4.037565 GCCACACTTAAAGGTAAGCAAGTT 59.962 41.667 0.00 0.00 40.48 2.66
322 323 3.568430 GCCACACTTAAAGGTAAGCAAGT 59.432 43.478 0.00 0.00 40.48 3.16
323 324 3.568007 TGCCACACTTAAAGGTAAGCAAG 59.432 43.478 0.00 0.00 40.48 4.01
324 325 3.556999 TGCCACACTTAAAGGTAAGCAA 58.443 40.909 0.00 0.00 40.48 3.91
325 326 3.216187 TGCCACACTTAAAGGTAAGCA 57.784 42.857 0.00 0.00 40.48 3.91
326 327 3.305131 GGTTGCCACACTTAAAGGTAAGC 60.305 47.826 0.00 0.00 40.48 3.09
327 328 4.142038 AGGTTGCCACACTTAAAGGTAAG 58.858 43.478 0.00 0.00 42.23 2.34
328 329 4.173290 AGGTTGCCACACTTAAAGGTAA 57.827 40.909 0.00 0.00 0.00 2.85
329 330 3.868619 AGGTTGCCACACTTAAAGGTA 57.131 42.857 0.00 0.00 0.00 3.08
330 331 2.748209 AGGTTGCCACACTTAAAGGT 57.252 45.000 0.00 0.00 0.00 3.50
331 332 3.492482 CCAAAGGTTGCCACACTTAAAGG 60.492 47.826 0.00 0.00 0.00 3.11
332 333 3.716601 CCAAAGGTTGCCACACTTAAAG 58.283 45.455 0.00 0.00 0.00 1.85
333 334 2.159028 GCCAAAGGTTGCCACACTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
334 335 1.410882 GCCAAAGGTTGCCACACTTAA 59.589 47.619 0.00 0.00 0.00 1.85
335 336 1.036707 GCCAAAGGTTGCCACACTTA 58.963 50.000 0.00 0.00 0.00 2.24
336 337 0.975040 TGCCAAAGGTTGCCACACTT 60.975 50.000 0.00 0.00 0.00 3.16
337 338 0.975040 TTGCCAAAGGTTGCCACACT 60.975 50.000 0.00 0.00 0.00 3.55
338 339 0.107945 TTTGCCAAAGGTTGCCACAC 60.108 50.000 0.00 0.00 0.00 3.82
339 340 0.177604 CTTTGCCAAAGGTTGCCACA 59.822 50.000 9.37 0.00 34.85 4.17
340 341 0.177836 ACTTTGCCAAAGGTTGCCAC 59.822 50.000 20.55 0.00 42.82 5.01
341 342 0.908198 AACTTTGCCAAAGGTTGCCA 59.092 45.000 20.55 0.00 42.82 4.92
342 343 2.102420 ACTAACTTTGCCAAAGGTTGCC 59.898 45.455 20.55 0.00 42.82 4.52
343 344 3.381045 GACTAACTTTGCCAAAGGTTGC 58.619 45.455 20.55 8.34 42.82 4.17
344 345 3.628017 CGACTAACTTTGCCAAAGGTTG 58.372 45.455 20.55 17.14 42.82 3.77
345 346 2.034179 GCGACTAACTTTGCCAAAGGTT 59.966 45.455 20.55 13.99 42.82 3.50
346 347 1.607148 GCGACTAACTTTGCCAAAGGT 59.393 47.619 20.55 17.05 42.82 3.50
347 348 1.606668 TGCGACTAACTTTGCCAAAGG 59.393 47.619 20.55 6.29 42.82 3.11
348 349 3.347958 TTGCGACTAACTTTGCCAAAG 57.652 42.857 15.47 15.47 44.10 2.77
349 350 3.440228 GTTTGCGACTAACTTTGCCAAA 58.560 40.909 0.00 0.00 0.00 3.28
350 351 2.223618 GGTTTGCGACTAACTTTGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
351 352 1.335496 GGTTTGCGACTAACTTTGCCA 59.665 47.619 0.00 0.00 0.00 4.92
352 353 1.335496 TGGTTTGCGACTAACTTTGCC 59.665 47.619 0.00 0.00 0.00 4.52
353 354 2.766970 TGGTTTGCGACTAACTTTGC 57.233 45.000 0.00 0.00 0.00 3.68
354 355 4.416620 TGTTTGGTTTGCGACTAACTTTG 58.583 39.130 0.00 0.00 0.00 2.77
355 356 4.705337 TGTTTGGTTTGCGACTAACTTT 57.295 36.364 0.00 0.00 0.00 2.66
356 357 4.417506 GTTGTTTGGTTTGCGACTAACTT 58.582 39.130 0.00 0.00 0.00 2.66
357 358 3.181494 GGTTGTTTGGTTTGCGACTAACT 60.181 43.478 0.00 0.00 0.00 2.24
358 359 3.110358 GGTTGTTTGGTTTGCGACTAAC 58.890 45.455 0.00 0.00 0.00 2.34
359 360 2.099427 GGGTTGTTTGGTTTGCGACTAA 59.901 45.455 0.00 0.00 0.00 2.24
360 361 1.677052 GGGTTGTTTGGTTTGCGACTA 59.323 47.619 0.00 0.00 0.00 2.59
361 362 0.458260 GGGTTGTTTGGTTTGCGACT 59.542 50.000 0.00 0.00 0.00 4.18
362 363 0.528901 GGGGTTGTTTGGTTTGCGAC 60.529 55.000 0.00 0.00 0.00 5.19
363 364 0.684805 AGGGGTTGTTTGGTTTGCGA 60.685 50.000 0.00 0.00 0.00 5.10
364 365 1.000717 CTAGGGGTTGTTTGGTTTGCG 60.001 52.381 0.00 0.00 0.00 4.85
365 366 2.036387 ACTAGGGGTTGTTTGGTTTGC 58.964 47.619 0.00 0.00 0.00 3.68
366 367 3.028130 ACACTAGGGGTTGTTTGGTTTG 58.972 45.455 0.00 0.00 0.00 2.93
367 368 3.293337 GACACTAGGGGTTGTTTGGTTT 58.707 45.455 0.00 0.00 0.00 3.27
368 369 2.242708 TGACACTAGGGGTTGTTTGGTT 59.757 45.455 0.00 0.00 0.00 3.67
369 370 1.847737 TGACACTAGGGGTTGTTTGGT 59.152 47.619 0.00 0.00 0.00 3.67
370 371 2.504367 CTGACACTAGGGGTTGTTTGG 58.496 52.381 0.00 0.00 0.00 3.28
371 372 1.880027 GCTGACACTAGGGGTTGTTTG 59.120 52.381 0.00 0.00 0.00 2.93
372 373 1.542547 CGCTGACACTAGGGGTTGTTT 60.543 52.381 0.00 0.00 0.00 2.83
373 374 0.034896 CGCTGACACTAGGGGTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
374 375 1.119574 ACGCTGACACTAGGGGTTGT 61.120 55.000 0.00 0.00 35.17 3.32
375 376 0.034896 AACGCTGACACTAGGGGTTG 59.965 55.000 0.00 0.00 35.41 3.77
376 377 0.320697 GAACGCTGACACTAGGGGTT 59.679 55.000 0.00 0.00 38.48 4.11
377 378 0.542232 AGAACGCTGACACTAGGGGT 60.542 55.000 0.00 0.00 35.17 4.95
378 379 0.108615 CAGAACGCTGACACTAGGGG 60.109 60.000 0.00 0.00 45.17 4.79
379 380 0.108615 CCAGAACGCTGACACTAGGG 60.109 60.000 0.00 0.00 45.17 3.53
380 381 0.603569 ACCAGAACGCTGACACTAGG 59.396 55.000 0.00 0.00 45.17 3.02
381 382 1.670087 CCACCAGAACGCTGACACTAG 60.670 57.143 0.00 0.00 45.17 2.57
382 383 0.317160 CCACCAGAACGCTGACACTA 59.683 55.000 0.00 0.00 45.17 2.74
383 384 1.069765 CCACCAGAACGCTGACACT 59.930 57.895 0.00 0.00 45.17 3.55
384 385 1.961277 CCCACCAGAACGCTGACAC 60.961 63.158 0.00 0.00 45.17 3.67
385 386 2.425592 CCCACCAGAACGCTGACA 59.574 61.111 0.00 0.00 45.17 3.58
386 387 1.961277 CACCCACCAGAACGCTGAC 60.961 63.158 0.00 0.00 45.17 3.51
387 388 2.425592 CACCCACCAGAACGCTGA 59.574 61.111 0.00 0.00 45.17 4.26
388 389 2.669569 CCACCCACCAGAACGCTG 60.670 66.667 0.00 0.00 41.93 5.18
389 390 3.953775 CCCACCCACCAGAACGCT 61.954 66.667 0.00 0.00 0.00 5.07
445 448 0.521291 GGCAGTGTACGTGTACGGTA 59.479 55.000 9.40 0.00 44.95 4.02
461 464 0.809636 CCGAATGTAGACGCATGGCA 60.810 55.000 0.00 0.00 0.00 4.92
556 593 4.678574 CGAACCCAGTGTATTACGGAATGA 60.679 45.833 2.16 0.00 0.00 2.57
572 610 1.299648 CCATCAAGAGGCGAACCCA 59.700 57.895 0.00 0.00 36.11 4.51
622 660 4.162690 GTCCCTGGCAGGCTACCG 62.163 72.222 28.51 14.08 32.73 4.02
644 683 3.448660 GGCTTGGGCTAAAATCAAGACAT 59.551 43.478 6.49 0.00 43.81 3.06
666 705 3.925379 AGCCAAAGAATTTAAAAGGCGG 58.075 40.909 0.00 0.00 45.10 6.13
675 714 3.194329 GCTCAAGGCTAGCCAAAGAATTT 59.806 43.478 34.70 16.01 36.96 1.82
763 812 1.560146 GAAGGAGGTTTGAGGGTAGGG 59.440 57.143 0.00 0.00 0.00 3.53
793 848 3.319198 GGTTGGTGGAGGCGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
943 998 2.435059 GGCGTGGCAGGAGAGAAC 60.435 66.667 12.03 0.00 0.00 3.01
1076 1139 2.159379 GGAATGTCTGCACCGAATTTCC 60.159 50.000 0.00 0.00 0.00 3.13
1099 1162 1.479368 TAGTTACCCCCGCGGTTGTT 61.479 55.000 26.12 5.73 45.36 2.83
1158 1228 0.818040 GCGCCCAATTATCCCGAAGT 60.818 55.000 0.00 0.00 0.00 3.01
1465 1575 4.141959 TGAGTCGATTAATGCATCAGGTGA 60.142 41.667 0.00 0.00 0.00 4.02
2140 2334 3.375699 AGGTGTAACATTCGAGGATCCT 58.624 45.455 16.13 16.13 39.98 3.24
2313 2507 6.456181 GCTGATTATCTTTCTTGTTGACGAGG 60.456 42.308 0.00 0.00 0.00 4.63
2477 2685 9.669353 GATTCATTACAACATAATTCATTCGCT 57.331 29.630 0.00 0.00 0.00 4.93
2644 2853 5.571784 TTCTCATCAATGCCACATCTTTC 57.428 39.130 0.00 0.00 0.00 2.62
2789 3005 4.676018 GCTCGTTAAACAAATAAAACCGCA 59.324 37.500 0.00 0.00 0.00 5.69
2807 3023 9.245962 GTTATACTATTCAGTAACATTGCTCGT 57.754 33.333 0.00 0.00 40.61 4.18
3049 3269 2.906691 CATAACCTGCTGCTAGCTCT 57.093 50.000 17.23 0.00 42.97 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.