Multiple sequence alignment - TraesCS5D01G539000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G539000 chr5D 100.000 2742 0 0 1 2742 550659636 550662377 0.000000e+00 5064.0
1 TraesCS5D01G539000 chr5D 87.579 475 32 10 1457 1913 551024827 551025292 2.420000e-145 525.0
2 TraesCS5D01G539000 chr5D 92.881 295 20 1 535 829 551024321 551024614 7.020000e-116 427.0
3 TraesCS5D01G539000 chr5D 82.546 487 49 30 708 1178 550965247 550965713 1.980000e-106 396.0
4 TraesCS5D01G539000 chr5D 87.379 309 23 10 1535 1831 550646697 550647001 9.400000e-90 340.0
5 TraesCS5D01G539000 chr5D 94.089 203 12 0 973 1175 551024624 551024826 2.650000e-80 309.0
6 TraesCS5D01G539000 chr5D 85.397 315 24 12 1535 1833 550965795 550966103 9.540000e-80 307.0
7 TraesCS5D01G539000 chr5D 90.476 210 16 3 973 1178 550964698 550964907 9.670000e-70 274.0
8 TraesCS5D01G539000 chr5D 90.972 144 13 0 666 809 550964516 550964659 7.750000e-46 195.0
9 TraesCS5D01G539000 chr5D 82.710 214 18 11 598 793 550646134 550646346 3.630000e-39 172.0
10 TraesCS5D01G539000 chr5D 100.000 36 0 0 2588 2623 267843574 267843539 1.760000e-07 67.6
11 TraesCS5D01G539000 chr7B 93.548 496 25 5 1 490 96400919 96400425 0.000000e+00 732.0
12 TraesCS5D01G539000 chr7B 92.369 498 28 9 1 490 720142933 720142438 0.000000e+00 701.0
13 TraesCS5D01G539000 chr7B 89.076 119 13 0 826 944 17664989 17665107 6.120000e-32 148.0
14 TraesCS5D01G539000 chr7A 93.293 492 27 6 1 490 720724559 720725046 0.000000e+00 721.0
15 TraesCS5D01G539000 chr7A 81.618 544 76 17 2057 2585 287210876 287210342 1.950000e-116 429.0
16 TraesCS5D01G539000 chr7A 89.046 283 28 3 1177 1457 533624314 533624033 5.620000e-92 348.0
17 TraesCS5D01G539000 chr7D 92.323 508 29 7 1 500 617769775 617769270 0.000000e+00 713.0
18 TraesCS5D01G539000 chr7D 92.008 513 29 9 1 504 501611010 501610501 0.000000e+00 710.0
19 TraesCS5D01G539000 chr3D 93.075 491 26 7 4 490 254459725 254459239 0.000000e+00 712.0
20 TraesCS5D01G539000 chr3D 90.323 279 25 2 1182 1459 460121078 460120801 5.580000e-97 364.0
21 TraesCS5D01G539000 chr3D 90.323 279 25 2 1182 1459 525540947 525541224 5.580000e-97 364.0
22 TraesCS5D01G539000 chr3D 89.720 107 10 1 2057 2162 538630459 538630565 4.760000e-28 135.0
23 TraesCS5D01G539000 chr3D 89.796 98 10 0 1948 2045 609900474 609900377 2.870000e-25 126.0
24 TraesCS5D01G539000 chr5B 92.292 506 29 7 1 502 47330517 47331016 0.000000e+00 710.0
25 TraesCS5D01G539000 chr5B 89.614 414 23 7 1537 1931 703306144 703306556 2.440000e-140 508.0
26 TraesCS5D01G539000 chr5B 92.881 295 19 2 535 829 703305548 703305840 7.020000e-116 427.0
27 TraesCS5D01G539000 chr5B 88.856 341 26 9 1484 1816 703271752 703272088 2.540000e-110 409.0
28 TraesCS5D01G539000 chr5B 91.582 297 21 3 535 829 703291311 703291605 9.140000e-110 407.0
29 TraesCS5D01G539000 chr5B 89.716 282 28 1 1181 1461 308836452 308836171 2.600000e-95 359.0
30 TraesCS5D01G539000 chr5B 88.487 304 21 10 1535 1831 703269012 703269308 3.360000e-94 355.0
31 TraesCS5D01G539000 chr5B 87.372 293 23 8 1535 1816 703291895 703292184 9.470000e-85 324.0
32 TraesCS5D01G539000 chr5B 95.074 203 10 0 973 1175 703305846 703306048 1.230000e-83 320.0
33 TraesCS5D01G539000 chr5B 92.271 207 15 1 973 1178 703291615 703291821 2.670000e-75 292.0
34 TraesCS5D01G539000 chr5B 89.806 206 18 1 973 1175 703271533 703271738 7.530000e-66 261.0
35 TraesCS5D01G539000 chr5B 89.831 118 12 0 827 944 413048759 413048876 4.730000e-33 152.0
36 TraesCS5D01G539000 chr2B 92.137 496 32 6 1 490 776895632 776895138 0.000000e+00 693.0
37 TraesCS5D01G539000 chr2B 91.984 499 30 8 1 494 707594573 707594080 0.000000e+00 691.0
38 TraesCS5D01G539000 chr2B 89.643 280 26 3 1182 1459 133123230 133122952 1.210000e-93 353.0
39 TraesCS5D01G539000 chr2B 89.831 118 12 0 826 943 274594728 274594845 4.730000e-33 152.0
40 TraesCS5D01G539000 chr2B 88.525 122 13 1 827 948 222094682 222094562 2.200000e-31 147.0
41 TraesCS5D01G539000 chr3B 80.146 549 81 20 2056 2585 475253745 475253206 4.280000e-103 385.0
42 TraesCS5D01G539000 chr3B 78.425 292 49 7 2305 2583 706734829 706734539 7.800000e-41 178.0
43 TraesCS5D01G539000 chr4B 80.337 534 77 19 2071 2585 478573311 478572787 1.990000e-101 379.0
44 TraesCS5D01G539000 chr4B 88.929 280 30 1 1182 1460 37402791 37402512 7.270000e-91 344.0
45 TraesCS5D01G539000 chr4B 90.698 43 4 0 2056 2098 482641496 482641454 1.060000e-04 58.4
46 TraesCS5D01G539000 chr6B 89.085 284 30 1 1177 1459 207461891 207462174 4.340000e-93 351.0
47 TraesCS5D01G539000 chr6B 89.007 282 30 1 1181 1461 588947958 588948239 5.620000e-92 348.0
48 TraesCS5D01G539000 chr1B 89.007 282 28 3 1181 1461 522523692 522523413 2.020000e-91 346.0
49 TraesCS5D01G539000 chr1B 78.311 521 84 16 2082 2584 5275950 5276459 2.650000e-80 309.0
50 TraesCS5D01G539000 chr1B 88.983 118 13 0 827 944 292419249 292419366 2.200000e-31 147.0
51 TraesCS5D01G539000 chr4A 87.667 300 27 8 1538 1831 616977492 616977197 9.400000e-90 340.0
52 TraesCS5D01G539000 chr4A 91.892 222 13 2 1538 1754 616961551 616961330 3.430000e-79 305.0
53 TraesCS5D01G539000 chr4A 79.616 417 71 13 2063 2473 36070921 36070513 1.240000e-73 287.0
54 TraesCS5D01G539000 chr4A 77.170 530 76 26 2071 2585 669402192 669402691 1.620000e-67 267.0
55 TraesCS5D01G539000 chr4A 92.090 177 6 3 535 704 616918702 616918527 2.730000e-60 243.0
56 TraesCS5D01G539000 chr4A 80.220 273 21 18 570 829 616962125 616961873 1.010000e-39 174.0
57 TraesCS5D01G539000 chr4A 90.678 118 11 0 826 943 660676626 660676743 1.020000e-34 158.0
58 TraesCS5D01G539000 chr4A 90.000 120 12 0 826 945 687422431 687422550 3.660000e-34 156.0
59 TraesCS5D01G539000 chr4A 79.012 243 21 17 582 809 616978045 616977818 3.680000e-29 139.0
60 TraesCS5D01G539000 chr1D 78.889 540 87 16 2062 2584 169699 169170 9.400000e-90 340.0
61 TraesCS5D01G539000 chr1D 94.737 38 2 0 2587 2624 259209479 259209516 2.950000e-05 60.2
62 TraesCS5D01G539000 chr5A 80.189 424 72 11 2053 2472 390376244 390375829 9.540000e-80 307.0
63 TraesCS5D01G539000 chr5A 86.139 101 14 0 1946 2046 480099061 480098961 2.890000e-20 110.0
64 TraesCS5D01G539000 chrUn 79.419 413 67 14 2057 2460 27877855 27878258 2.690000e-70 276.0
65 TraesCS5D01G539000 chrUn 81.915 282 47 3 2056 2337 42512639 42512362 4.560000e-58 235.0
66 TraesCS5D01G539000 chr2D 88.983 118 13 0 827 944 376048231 376048114 2.200000e-31 147.0
67 TraesCS5D01G539000 chr3A 86.139 101 14 0 1946 2046 593037324 593037224 2.890000e-20 110.0
68 TraesCS5D01G539000 chr3A 94.595 37 2 0 2057 2093 714534018 714533982 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G539000 chr5D 550659636 550662377 2741 False 5064.000000 5064 100.000000 1 2742 1 chr5D.!!$F1 2741
1 TraesCS5D01G539000 chr5D 551024321 551025292 971 False 420.333333 525 91.516333 535 1913 3 chr5D.!!$F4 1378
2 TraesCS5D01G539000 chr5D 550964516 550966103 1587 False 293.000000 396 87.347750 666 1833 4 chr5D.!!$F3 1167
3 TraesCS5D01G539000 chr5D 550646134 550647001 867 False 256.000000 340 85.044500 598 1831 2 chr5D.!!$F2 1233
4 TraesCS5D01G539000 chr7A 287210342 287210876 534 True 429.000000 429 81.618000 2057 2585 1 chr7A.!!$R1 528
5 TraesCS5D01G539000 chr7D 617769270 617769775 505 True 713.000000 713 92.323000 1 500 1 chr7D.!!$R2 499
6 TraesCS5D01G539000 chr7D 501610501 501611010 509 True 710.000000 710 92.008000 1 504 1 chr7D.!!$R1 503
7 TraesCS5D01G539000 chr5B 703305548 703306556 1008 False 418.333333 508 92.523000 535 1931 3 chr5B.!!$F5 1396
8 TraesCS5D01G539000 chr5B 703269012 703272088 3076 False 341.666667 409 89.049667 973 1831 3 chr5B.!!$F3 858
9 TraesCS5D01G539000 chr5B 703291311 703292184 873 False 341.000000 407 90.408333 535 1816 3 chr5B.!!$F4 1281
10 TraesCS5D01G539000 chr3B 475253206 475253745 539 True 385.000000 385 80.146000 2056 2585 1 chr3B.!!$R1 529
11 TraesCS5D01G539000 chr4B 478572787 478573311 524 True 379.000000 379 80.337000 2071 2585 1 chr4B.!!$R2 514
12 TraesCS5D01G539000 chr1B 5275950 5276459 509 False 309.000000 309 78.311000 2082 2584 1 chr1B.!!$F1 502
13 TraesCS5D01G539000 chr4A 616961330 616962125 795 True 239.500000 305 86.056000 570 1754 2 chr4A.!!$R3 1184
14 TraesCS5D01G539000 chr4A 616977197 616978045 848 True 239.500000 340 83.339500 582 1831 2 chr4A.!!$R4 1249
15 TraesCS5D01G539000 chr1D 169170 169699 529 True 340.000000 340 78.889000 2062 2584 1 chr1D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1575 0.098376 CCTCGTACTCCTTCCGTTCG 59.902 60.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 3672 0.031314 CACGATCGATGGAGTGGGAG 59.969 60.0 24.34 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
461 473 8.880878 AATTAAAAGCGTGTGGTATTTTTCTT 57.119 26.923 0.00 0.00 0.00 2.52
490 502 1.339342 ACGTACGGGCCTTTTTGCTAT 60.339 47.619 21.06 0.00 0.00 2.97
491 503 2.093553 ACGTACGGGCCTTTTTGCTATA 60.094 45.455 21.06 0.00 0.00 1.31
492 504 2.542595 CGTACGGGCCTTTTTGCTATAG 59.457 50.000 7.57 0.00 0.00 1.31
493 505 2.801077 ACGGGCCTTTTTGCTATAGT 57.199 45.000 0.84 0.00 0.00 2.12
494 506 3.081710 ACGGGCCTTTTTGCTATAGTT 57.918 42.857 0.84 0.00 0.00 2.24
495 507 4.224991 ACGGGCCTTTTTGCTATAGTTA 57.775 40.909 0.84 0.00 0.00 2.24
496 508 3.943381 ACGGGCCTTTTTGCTATAGTTAC 59.057 43.478 0.84 0.00 0.00 2.50
497 509 4.196971 CGGGCCTTTTTGCTATAGTTACT 58.803 43.478 0.84 0.00 0.00 2.24
498 510 5.104817 ACGGGCCTTTTTGCTATAGTTACTA 60.105 40.000 0.84 0.00 0.00 1.82
499 511 5.818857 CGGGCCTTTTTGCTATAGTTACTAA 59.181 40.000 0.84 0.00 0.00 2.24
500 512 6.485648 CGGGCCTTTTTGCTATAGTTACTAAT 59.514 38.462 0.84 0.00 0.00 1.73
501 513 7.519970 CGGGCCTTTTTGCTATAGTTACTAATG 60.520 40.741 0.84 0.00 0.00 1.90
502 514 7.501225 GGGCCTTTTTGCTATAGTTACTAATGA 59.499 37.037 0.84 0.00 0.00 2.57
503 515 8.899771 GGCCTTTTTGCTATAGTTACTAATGAA 58.100 33.333 0.00 0.00 0.00 2.57
515 527 7.141100 AGTTACTAATGAATTTTGGTCCACG 57.859 36.000 0.00 0.00 0.00 4.94
517 529 4.079253 ACTAATGAATTTTGGTCCACGCT 58.921 39.130 0.00 0.00 0.00 5.07
518 530 5.250200 ACTAATGAATTTTGGTCCACGCTA 58.750 37.500 0.00 0.00 0.00 4.26
519 531 5.708230 ACTAATGAATTTTGGTCCACGCTAA 59.292 36.000 0.00 0.00 0.00 3.09
521 533 4.497473 TGAATTTTGGTCCACGCTAAAG 57.503 40.909 0.00 0.00 0.00 1.85
522 534 3.242518 GAATTTTGGTCCACGCTAAAGC 58.757 45.455 0.00 0.00 37.78 3.51
523 535 1.975660 TTTTGGTCCACGCTAAAGCT 58.024 45.000 0.00 0.00 39.32 3.74
526 538 2.380084 TGGTCCACGCTAAAGCTAAG 57.620 50.000 0.00 0.00 39.32 2.18
527 539 1.066430 TGGTCCACGCTAAAGCTAAGG 60.066 52.381 0.00 0.00 39.32 2.69
528 540 1.007580 GTCCACGCTAAAGCTAAGGC 58.992 55.000 0.00 0.00 39.32 4.35
529 541 0.107848 TCCACGCTAAAGCTAAGGCC 60.108 55.000 0.00 0.00 39.73 5.19
530 542 0.107654 CCACGCTAAAGCTAAGGCCT 60.108 55.000 0.00 0.00 39.73 5.19
533 545 2.866762 CACGCTAAAGCTAAGGCCTAAG 59.133 50.000 5.16 0.00 39.73 2.18
574 586 1.042229 TCGGGTCCAAAGACGAAAGA 58.958 50.000 0.00 0.00 44.54 2.52
609 621 2.203294 GTTGTGGGTCGTTGGCCT 60.203 61.111 3.32 0.00 0.00 5.19
819 1554 5.568392 ACATTTCTTCTCTCAATCTGCCTT 58.432 37.500 0.00 0.00 0.00 4.35
830 1565 3.119101 TCAATCTGCCTTTCCTCGTACTC 60.119 47.826 0.00 0.00 0.00 2.59
831 1566 1.183549 TCTGCCTTTCCTCGTACTCC 58.816 55.000 0.00 0.00 0.00 3.85
834 1569 1.549170 TGCCTTTCCTCGTACTCCTTC 59.451 52.381 0.00 0.00 0.00 3.46
835 1570 1.134759 GCCTTTCCTCGTACTCCTTCC 60.135 57.143 0.00 0.00 0.00 3.46
836 1571 1.134560 CCTTTCCTCGTACTCCTTCCG 59.865 57.143 0.00 0.00 0.00 4.30
838 1573 1.915141 TTCCTCGTACTCCTTCCGTT 58.085 50.000 0.00 0.00 0.00 4.44
840 1575 0.098376 CCTCGTACTCCTTCCGTTCG 59.902 60.000 0.00 0.00 0.00 3.95
841 1576 1.081892 CTCGTACTCCTTCCGTTCGA 58.918 55.000 0.00 0.00 34.04 3.71
842 1577 1.466167 CTCGTACTCCTTCCGTTCGAA 59.534 52.381 0.00 0.00 34.61 3.71
843 1578 1.879380 TCGTACTCCTTCCGTTCGAAA 59.121 47.619 0.00 0.00 32.59 3.46
844 1579 2.293122 TCGTACTCCTTCCGTTCGAAAA 59.707 45.455 0.00 0.00 32.59 2.29
845 1580 3.057315 TCGTACTCCTTCCGTTCGAAAAT 60.057 43.478 0.00 0.00 32.59 1.82
846 1581 4.155826 TCGTACTCCTTCCGTTCGAAAATA 59.844 41.667 0.00 0.00 32.59 1.40
849 1584 4.891260 ACTCCTTCCGTTCGAAAATACTT 58.109 39.130 0.00 0.00 0.00 2.24
852 1587 6.755607 ACTCCTTCCGTTCGAAAATACTTATC 59.244 38.462 0.00 0.00 0.00 1.75
853 1588 6.632909 TCCTTCCGTTCGAAAATACTTATCA 58.367 36.000 0.00 0.00 0.00 2.15
856 1591 4.501559 TCCGTTCGAAAATACTTATCAGCG 59.498 41.667 0.00 0.00 0.00 5.18
857 1592 4.317839 CCGTTCGAAAATACTTATCAGCGG 60.318 45.833 0.00 0.00 0.00 5.52
858 1593 4.501559 CGTTCGAAAATACTTATCAGCGGA 59.498 41.667 0.00 0.00 0.00 5.54
859 1594 5.005012 CGTTCGAAAATACTTATCAGCGGAA 59.995 40.000 0.00 0.00 0.00 4.30
860 1595 6.292168 CGTTCGAAAATACTTATCAGCGGAAT 60.292 38.462 0.00 0.00 0.00 3.01
861 1596 6.525121 TCGAAAATACTTATCAGCGGAATG 57.475 37.500 0.00 0.00 0.00 2.67
863 1598 5.465390 CGAAAATACTTATCAGCGGAATGGA 59.535 40.000 0.00 0.00 0.00 3.41
864 1599 6.147821 CGAAAATACTTATCAGCGGAATGGAT 59.852 38.462 0.00 0.00 0.00 3.41
865 1600 6.808008 AAATACTTATCAGCGGAATGGATG 57.192 37.500 0.00 0.00 0.00 3.51
866 1601 3.845781 ACTTATCAGCGGAATGGATGT 57.154 42.857 0.00 0.00 0.00 3.06
867 1602 4.955811 ACTTATCAGCGGAATGGATGTA 57.044 40.909 0.00 0.00 0.00 2.29
869 1604 5.482908 ACTTATCAGCGGAATGGATGTATC 58.517 41.667 0.00 0.00 0.00 2.24
870 1605 5.247110 ACTTATCAGCGGAATGGATGTATCT 59.753 40.000 0.00 0.00 0.00 1.98
871 1606 6.437477 ACTTATCAGCGGAATGGATGTATCTA 59.563 38.462 0.00 0.00 0.00 1.98
872 1607 4.790765 TCAGCGGAATGGATGTATCTAG 57.209 45.455 0.00 0.00 0.00 2.43
874 1609 4.218635 TCAGCGGAATGGATGTATCTAGAC 59.781 45.833 0.00 0.00 0.00 2.59
875 1610 3.191581 AGCGGAATGGATGTATCTAGACG 59.808 47.826 0.00 0.00 0.00 4.18
876 1611 3.057456 GCGGAATGGATGTATCTAGACGT 60.057 47.826 0.00 0.00 0.00 4.34
877 1612 4.155462 GCGGAATGGATGTATCTAGACGTA 59.845 45.833 0.00 0.00 0.00 3.57
878 1613 5.163642 GCGGAATGGATGTATCTAGACGTAT 60.164 44.000 0.00 0.00 0.00 3.06
879 1614 6.625300 GCGGAATGGATGTATCTAGACGTATT 60.625 42.308 0.00 0.00 0.00 1.89
880 1615 7.313646 CGGAATGGATGTATCTAGACGTATTT 58.686 38.462 0.00 0.00 0.00 1.40
881 1616 7.813148 CGGAATGGATGTATCTAGACGTATTTT 59.187 37.037 0.00 0.00 0.00 1.82
912 1647 9.944663 TTAGATACATCCATTTTTACGCATTTC 57.055 29.630 0.00 0.00 0.00 2.17
913 1648 8.225603 AGATACATCCATTTTTACGCATTTCT 57.774 30.769 0.00 0.00 0.00 2.52
914 1649 8.686334 AGATACATCCATTTTTACGCATTTCTT 58.314 29.630 0.00 0.00 0.00 2.52
915 1650 8.856490 ATACATCCATTTTTACGCATTTCTTC 57.144 30.769 0.00 0.00 0.00 2.87
917 1652 5.614923 TCCATTTTTACGCATTTCTTCGA 57.385 34.783 0.00 0.00 0.00 3.71
918 1653 6.189677 TCCATTTTTACGCATTTCTTCGAT 57.810 33.333 0.00 0.00 0.00 3.59
920 1655 7.753659 TCCATTTTTACGCATTTCTTCGATAA 58.246 30.769 0.00 0.00 0.00 1.75
921 1656 8.237949 TCCATTTTTACGCATTTCTTCGATAAA 58.762 29.630 0.00 0.00 0.00 1.40
922 1657 9.019764 CCATTTTTACGCATTTCTTCGATAAAT 57.980 29.630 0.00 0.00 0.00 1.40
929 1664 8.475926 ACGCATTTCTTCGATAAATATTTTCG 57.524 30.769 18.54 18.54 0.00 3.46
931 1666 9.153952 CGCATTTCTTCGATAAATATTTTCGAA 57.846 29.630 27.23 27.23 46.24 3.71
934 1669 9.646336 ATTTCTTCGATAAATATTTTCGAACGG 57.354 29.630 26.36 21.54 44.32 4.44
935 1670 7.990541 TCTTCGATAAATATTTTCGAACGGA 57.009 32.000 26.36 22.61 44.32 4.69
936 1671 8.057812 TCTTCGATAAATATTTTCGAACGGAG 57.942 34.615 26.36 21.11 44.32 4.63
937 1672 6.758593 TCGATAAATATTTTCGAACGGAGG 57.241 37.500 22.01 3.87 38.80 4.30
938 1673 5.693104 TCGATAAATATTTTCGAACGGAGGG 59.307 40.000 22.01 3.41 38.80 4.30
940 1675 6.128902 CGATAAATATTTTCGAACGGAGGGAG 60.129 42.308 19.29 0.00 34.92 4.30
941 1676 4.482952 AATATTTTCGAACGGAGGGAGT 57.517 40.909 0.00 0.00 0.00 3.85
942 1677 5.603170 AATATTTTCGAACGGAGGGAGTA 57.397 39.130 0.00 0.00 0.00 2.59
943 1678 2.730550 TTTTCGAACGGAGGGAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
944 1679 0.890683 TTTCGAACGGAGGGAGTACC 59.109 55.000 0.00 0.00 40.67 3.34
955 1690 2.752075 GGGAGTACCTACTAGCCACT 57.248 55.000 0.00 0.00 36.50 4.00
956 1691 3.872459 GGGAGTACCTACTAGCCACTA 57.128 52.381 0.00 0.00 36.50 2.74
957 1692 3.485394 GGGAGTACCTACTAGCCACTAC 58.515 54.545 0.00 0.00 36.50 2.73
958 1693 3.137533 GGAGTACCTACTAGCCACTACG 58.862 54.545 0.00 0.00 36.50 3.51
959 1694 3.432890 GGAGTACCTACTAGCCACTACGT 60.433 52.174 0.00 0.00 36.50 3.57
960 1695 3.802866 AGTACCTACTAGCCACTACGTC 58.197 50.000 0.00 0.00 34.13 4.34
962 1697 1.208052 ACCTACTAGCCACTACGTCGA 59.792 52.381 0.00 0.00 0.00 4.20
963 1698 1.865970 CCTACTAGCCACTACGTCGAG 59.134 57.143 0.00 0.00 0.00 4.04
964 1699 2.548875 CTACTAGCCACTACGTCGAGT 58.451 52.381 0.00 0.00 0.00 4.18
965 1700 1.085091 ACTAGCCACTACGTCGAGTG 58.915 55.000 10.89 10.89 45.43 3.51
1131 2812 1.843851 TGGTCCTTCAACACCAACTCT 59.156 47.619 0.00 0.00 39.85 3.24
1176 2857 4.232310 GGCGACGTCCTAGGTAGT 57.768 61.111 10.58 10.09 0.00 2.73
1177 2858 3.386543 GGCGACGTCCTAGGTAGTA 57.613 57.895 10.58 0.00 0.00 1.82
1178 2859 1.224965 GGCGACGTCCTAGGTAGTAG 58.775 60.000 10.58 11.21 0.00 2.57
1179 2860 1.474143 GGCGACGTCCTAGGTAGTAGT 60.474 57.143 10.58 3.00 0.00 2.73
1180 2861 2.224066 GGCGACGTCCTAGGTAGTAGTA 60.224 54.545 10.58 0.00 0.00 1.82
1182 2863 4.061596 GCGACGTCCTAGGTAGTAGTATT 58.938 47.826 10.58 0.00 0.00 1.89
1183 2864 5.230942 GCGACGTCCTAGGTAGTAGTATTA 58.769 45.833 10.58 0.00 0.00 0.98
1184 2865 5.347364 GCGACGTCCTAGGTAGTAGTATTAG 59.653 48.000 10.58 0.00 0.00 1.73
1185 2866 5.866633 CGACGTCCTAGGTAGTAGTATTAGG 59.133 48.000 10.58 10.03 33.69 2.69
1186 2867 5.555966 ACGTCCTAGGTAGTAGTATTAGGC 58.444 45.833 9.08 7.35 32.69 3.93
1187 2868 5.309282 ACGTCCTAGGTAGTAGTATTAGGCT 59.691 44.000 9.08 0.00 32.69 4.58
1188 2869 5.642919 CGTCCTAGGTAGTAGTATTAGGCTG 59.357 48.000 9.08 5.09 32.69 4.85
1189 2870 5.945191 GTCCTAGGTAGTAGTATTAGGCTGG 59.055 48.000 9.08 0.00 32.69 4.85
1190 2871 5.614402 TCCTAGGTAGTAGTATTAGGCTGGT 59.386 44.000 9.08 0.00 32.69 4.00
1191 2872 6.103797 TCCTAGGTAGTAGTATTAGGCTGGTT 59.896 42.308 9.08 0.00 32.69 3.67
1192 2873 6.208994 CCTAGGTAGTAGTATTAGGCTGGTTG 59.791 46.154 0.00 0.00 0.00 3.77
1193 2874 5.526434 AGGTAGTAGTATTAGGCTGGTTGT 58.474 41.667 0.00 0.00 0.00 3.32
1194 2875 6.676558 AGGTAGTAGTATTAGGCTGGTTGTA 58.323 40.000 0.00 0.00 0.00 2.41
1195 2876 7.128077 AGGTAGTAGTATTAGGCTGGTTGTAA 58.872 38.462 0.00 0.00 0.00 2.41
1196 2877 7.788385 AGGTAGTAGTATTAGGCTGGTTGTAAT 59.212 37.037 0.00 0.00 0.00 1.89
1197 2878 7.871463 GGTAGTAGTATTAGGCTGGTTGTAATG 59.129 40.741 0.00 0.00 0.00 1.90
1198 2879 7.670605 AGTAGTATTAGGCTGGTTGTAATGA 57.329 36.000 0.00 0.00 0.00 2.57
1199 2880 8.086143 AGTAGTATTAGGCTGGTTGTAATGAA 57.914 34.615 0.00 0.00 0.00 2.57
1200 2881 8.204836 AGTAGTATTAGGCTGGTTGTAATGAAG 58.795 37.037 0.00 0.00 0.00 3.02
1201 2882 7.195374 AGTATTAGGCTGGTTGTAATGAAGA 57.805 36.000 0.00 0.00 0.00 2.87
1202 2883 7.275920 AGTATTAGGCTGGTTGTAATGAAGAG 58.724 38.462 0.00 0.00 0.00 2.85
1203 2884 5.499004 TTAGGCTGGTTGTAATGAAGAGT 57.501 39.130 0.00 0.00 0.00 3.24
1204 2885 6.614694 TTAGGCTGGTTGTAATGAAGAGTA 57.385 37.500 0.00 0.00 0.00 2.59
1205 2886 5.700402 AGGCTGGTTGTAATGAAGAGTAT 57.300 39.130 0.00 0.00 0.00 2.12
1206 2887 5.675538 AGGCTGGTTGTAATGAAGAGTATC 58.324 41.667 0.00 0.00 0.00 2.24
1207 2888 5.189736 AGGCTGGTTGTAATGAAGAGTATCA 59.810 40.000 0.00 0.00 37.82 2.15
1208 2889 6.058183 GGCTGGTTGTAATGAAGAGTATCAT 58.942 40.000 0.00 0.00 41.74 2.45
1209 2890 6.017605 GGCTGGTTGTAATGAAGAGTATCATG 60.018 42.308 0.00 0.00 39.90 3.07
1210 2891 6.540189 GCTGGTTGTAATGAAGAGTATCATGT 59.460 38.462 0.00 0.00 39.90 3.21
1211 2892 7.710907 GCTGGTTGTAATGAAGAGTATCATGTA 59.289 37.037 0.00 0.00 39.90 2.29
1212 2893 9.770097 CTGGTTGTAATGAAGAGTATCATGTAT 57.230 33.333 0.00 0.00 39.90 2.29
1311 2992 9.480053 AATACTTTATTTATTGCCATGCATGAC 57.520 29.630 28.31 17.77 38.76 3.06
1312 2993 6.876155 ACTTTATTTATTGCCATGCATGACA 58.124 32.000 28.31 20.53 38.76 3.58
1313 2994 6.757947 ACTTTATTTATTGCCATGCATGACAC 59.242 34.615 28.31 16.49 38.76 3.67
1314 2995 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
1315 2996 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
1316 2997 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
1317 2998 5.441709 TTATTGCCATGCATGACACATAG 57.558 39.130 28.31 10.23 38.76 2.23
1318 2999 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
1319 3000 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
1320 3001 3.469739 TGCCATGCATGACACATAGTAG 58.530 45.455 28.31 8.01 31.71 2.57
1321 3002 2.225019 GCCATGCATGACACATAGTAGC 59.775 50.000 28.31 14.15 0.00 3.58
1322 3003 3.469739 CCATGCATGACACATAGTAGCA 58.530 45.455 28.31 0.00 37.13 3.49
1323 3004 4.070009 CCATGCATGACACATAGTAGCAT 58.930 43.478 28.31 0.00 41.24 3.79
1324 3005 5.240121 CCATGCATGACACATAGTAGCATA 58.760 41.667 28.31 0.00 39.67 3.14
1325 3006 5.350640 CCATGCATGACACATAGTAGCATAG 59.649 44.000 28.31 0.74 39.67 2.23
1326 3007 4.309933 TGCATGACACATAGTAGCATAGC 58.690 43.478 0.00 0.00 30.65 2.97
1327 3008 4.202243 TGCATGACACATAGTAGCATAGCA 60.202 41.667 0.00 0.00 30.65 3.49
1328 3009 4.934001 GCATGACACATAGTAGCATAGCAT 59.066 41.667 0.00 0.00 0.00 3.79
1329 3010 5.410746 GCATGACACATAGTAGCATAGCATT 59.589 40.000 0.00 0.00 0.00 3.56
1330 3011 6.072838 GCATGACACATAGTAGCATAGCATTT 60.073 38.462 0.00 0.00 0.00 2.32
1331 3012 7.118245 GCATGACACATAGTAGCATAGCATTTA 59.882 37.037 0.00 0.00 0.00 1.40
1332 3013 9.159364 CATGACACATAGTAGCATAGCATTTAT 57.841 33.333 0.00 0.00 0.00 1.40
1333 3014 9.730705 ATGACACATAGTAGCATAGCATTTATT 57.269 29.630 0.00 0.00 0.00 1.40
1342 3023 9.534565 AGTAGCATAGCATTTATTATGATACGG 57.465 33.333 11.77 0.00 46.16 4.02
1343 3024 9.314321 GTAGCATAGCATTTATTATGATACGGT 57.686 33.333 4.73 0.00 38.55 4.83
1364 3045 8.053026 ACGGTATCATGATATACTACTCAACC 57.947 38.462 18.18 11.85 33.62 3.77
1365 3046 7.889073 ACGGTATCATGATATACTACTCAACCT 59.111 37.037 18.18 2.02 33.62 3.50
1366 3047 8.399425 CGGTATCATGATATACTACTCAACCTC 58.601 40.741 18.18 0.84 33.62 3.85
1367 3048 8.688151 GGTATCATGATATACTACTCAACCTCC 58.312 40.741 18.18 6.16 33.62 4.30
1368 3049 9.469097 GTATCATGATATACTACTCAACCTCCT 57.531 37.037 18.18 0.00 30.98 3.69
1369 3050 8.588290 ATCATGATATACTACTCAACCTCCTC 57.412 38.462 6.36 0.00 0.00 3.71
1370 3051 7.760607 TCATGATATACTACTCAACCTCCTCT 58.239 38.462 0.00 0.00 0.00 3.69
1371 3052 8.228206 TCATGATATACTACTCAACCTCCTCTT 58.772 37.037 0.00 0.00 0.00 2.85
1372 3053 8.865090 CATGATATACTACTCAACCTCCTCTTT 58.135 37.037 0.00 0.00 0.00 2.52
1373 3054 8.466617 TGATATACTACTCAACCTCCTCTTTC 57.533 38.462 0.00 0.00 0.00 2.62
1374 3055 8.282982 TGATATACTACTCAACCTCCTCTTTCT 58.717 37.037 0.00 0.00 0.00 2.52
1375 3056 9.138596 GATATACTACTCAACCTCCTCTTTCTT 57.861 37.037 0.00 0.00 0.00 2.52
1376 3057 5.731957 ACTACTCAACCTCCTCTTTCTTC 57.268 43.478 0.00 0.00 0.00 2.87
1377 3058 5.148502 ACTACTCAACCTCCTCTTTCTTCA 58.851 41.667 0.00 0.00 0.00 3.02
1378 3059 5.782845 ACTACTCAACCTCCTCTTTCTTCAT 59.217 40.000 0.00 0.00 0.00 2.57
1379 3060 5.574970 ACTCAACCTCCTCTTTCTTCATT 57.425 39.130 0.00 0.00 0.00 2.57
1380 3061 5.946486 ACTCAACCTCCTCTTTCTTCATTT 58.054 37.500 0.00 0.00 0.00 2.32
1381 3062 7.079451 ACTCAACCTCCTCTTTCTTCATTTA 57.921 36.000 0.00 0.00 0.00 1.40
1382 3063 7.518188 ACTCAACCTCCTCTTTCTTCATTTAA 58.482 34.615 0.00 0.00 0.00 1.52
1383 3064 8.166726 ACTCAACCTCCTCTTTCTTCATTTAAT 58.833 33.333 0.00 0.00 0.00 1.40
1384 3065 8.940397 TCAACCTCCTCTTTCTTCATTTAATT 57.060 30.769 0.00 0.00 0.00 1.40
1385 3066 9.014297 TCAACCTCCTCTTTCTTCATTTAATTC 57.986 33.333 0.00 0.00 0.00 2.17
1386 3067 9.018582 CAACCTCCTCTTTCTTCATTTAATTCT 57.981 33.333 0.00 0.00 0.00 2.40
1388 3069 9.898152 ACCTCCTCTTTCTTCATTTAATTCTAG 57.102 33.333 0.00 0.00 0.00 2.43
1400 3081 9.958180 TTCATTTAATTCTAGAACACCTCATCA 57.042 29.630 7.48 0.00 0.00 3.07
1401 3082 9.958180 TCATTTAATTCTAGAACACCTCATCAA 57.042 29.630 7.48 0.00 0.00 2.57
1407 3088 6.500684 TCTAGAACACCTCATCAAAATTGC 57.499 37.500 0.00 0.00 0.00 3.56
1408 3089 4.525912 AGAACACCTCATCAAAATTGCC 57.474 40.909 0.00 0.00 0.00 4.52
1409 3090 3.896888 AGAACACCTCATCAAAATTGCCA 59.103 39.130 0.00 0.00 0.00 4.92
1410 3091 3.947910 ACACCTCATCAAAATTGCCAG 57.052 42.857 0.00 0.00 0.00 4.85
1411 3092 3.233507 ACACCTCATCAAAATTGCCAGT 58.766 40.909 0.00 0.00 0.00 4.00
1412 3093 3.642848 ACACCTCATCAAAATTGCCAGTT 59.357 39.130 0.00 0.00 0.00 3.16
1413 3094 4.832266 ACACCTCATCAAAATTGCCAGTTA 59.168 37.500 0.00 0.00 0.00 2.24
1414 3095 5.304101 ACACCTCATCAAAATTGCCAGTTAA 59.696 36.000 0.00 0.00 0.00 2.01
1415 3096 6.014327 ACACCTCATCAAAATTGCCAGTTAAT 60.014 34.615 0.00 0.00 0.00 1.40
1416 3097 7.178274 ACACCTCATCAAAATTGCCAGTTAATA 59.822 33.333 0.00 0.00 0.00 0.98
1417 3098 8.199449 CACCTCATCAAAATTGCCAGTTAATAT 58.801 33.333 0.00 0.00 0.00 1.28
1418 3099 8.199449 ACCTCATCAAAATTGCCAGTTAATATG 58.801 33.333 0.00 0.00 0.00 1.78
1419 3100 7.170320 CCTCATCAAAATTGCCAGTTAATATGC 59.830 37.037 0.00 0.00 0.00 3.14
1420 3101 7.554211 TCATCAAAATTGCCAGTTAATATGCA 58.446 30.769 0.00 0.00 0.00 3.96
1421 3102 8.205512 TCATCAAAATTGCCAGTTAATATGCAT 58.794 29.630 3.79 3.79 33.08 3.96
1422 3103 9.478768 CATCAAAATTGCCAGTTAATATGCATA 57.521 29.630 9.27 9.27 33.08 3.14
1430 3111 8.492673 TGCCAGTTAATATGCATAATACTAGC 57.507 34.615 19.71 19.71 0.00 3.42
1431 3112 8.321353 TGCCAGTTAATATGCATAATACTAGCT 58.679 33.333 23.33 13.70 0.00 3.32
1432 3113 9.817809 GCCAGTTAATATGCATAATACTAGCTA 57.182 33.333 11.13 0.00 0.00 3.32
1441 3122 7.317842 TGCATAATACTAGCTACGATACTCC 57.682 40.000 0.00 0.00 0.00 3.85
1442 3123 6.318144 TGCATAATACTAGCTACGATACTCCC 59.682 42.308 0.00 0.00 0.00 4.30
1443 3124 6.318144 GCATAATACTAGCTACGATACTCCCA 59.682 42.308 0.00 0.00 0.00 4.37
1444 3125 7.013464 GCATAATACTAGCTACGATACTCCCAT 59.987 40.741 0.00 0.00 0.00 4.00
1445 3126 8.904834 CATAATACTAGCTACGATACTCCCATT 58.095 37.037 0.00 0.00 0.00 3.16
1447 3128 7.862512 ATACTAGCTACGATACTCCCATTAC 57.137 40.000 0.00 0.00 0.00 1.89
1448 3129 4.694509 ACTAGCTACGATACTCCCATTACG 59.305 45.833 0.00 0.00 0.00 3.18
1449 3130 3.748083 AGCTACGATACTCCCATTACGA 58.252 45.455 0.00 0.00 0.00 3.43
1450 3131 3.501445 AGCTACGATACTCCCATTACGAC 59.499 47.826 0.00 0.00 0.00 4.34
1451 3132 3.365767 GCTACGATACTCCCATTACGACC 60.366 52.174 0.00 0.00 0.00 4.79
1452 3133 2.658285 ACGATACTCCCATTACGACCA 58.342 47.619 0.00 0.00 0.00 4.02
1453 3134 2.621998 ACGATACTCCCATTACGACCAG 59.378 50.000 0.00 0.00 0.00 4.00
1454 3135 2.607282 CGATACTCCCATTACGACCAGC 60.607 54.545 0.00 0.00 0.00 4.85
1455 3136 1.117150 TACTCCCATTACGACCAGCC 58.883 55.000 0.00 0.00 0.00 4.85
1462 3143 2.093658 CCATTACGACCAGCCTTACACT 60.094 50.000 0.00 0.00 0.00 3.55
1474 3155 1.066143 CCTTACACTCGTCCCTGCAAT 60.066 52.381 0.00 0.00 0.00 3.56
1517 3216 4.751600 TCGATTTACTATCCTGCATGCAAG 59.248 41.667 22.88 18.04 0.00 4.01
1533 3232 5.731686 GCATGCAAGCTAATAGACCTTTGAC 60.732 44.000 14.21 0.00 0.00 3.18
1639 3379 1.203994 GGCGCTAAGGTCTACAAGTCA 59.796 52.381 7.64 0.00 0.00 3.41
1761 3525 2.181777 GTCCATCGTCGAGCAGCA 59.818 61.111 0.00 0.00 0.00 4.41
1876 3649 4.267928 GGTCAGTGTAGTCGTATTGATTGC 59.732 45.833 0.00 0.00 0.00 3.56
1882 3655 3.513680 AGTCGTATTGATTGCCGTACA 57.486 42.857 0.00 0.00 0.00 2.90
1916 3689 1.032794 TTCTCCCACTCCATCGATCG 58.967 55.000 9.36 9.36 0.00 3.69
1918 3691 0.031314 CTCCCACTCCATCGATCGTG 59.969 60.000 15.94 12.28 0.00 4.35
1925 3698 2.057316 CTCCATCGATCGTGATTGCTC 58.943 52.381 15.94 0.00 0.00 4.26
1931 3704 5.332883 CCATCGATCGTGATTGCTCTTTTAG 60.333 44.000 15.94 0.00 0.00 1.85
1932 3705 4.993905 TCGATCGTGATTGCTCTTTTAGA 58.006 39.130 15.94 0.00 0.00 2.10
1933 3706 4.798907 TCGATCGTGATTGCTCTTTTAGAC 59.201 41.667 15.94 0.00 0.00 2.59
1934 3707 4.026475 CGATCGTGATTGCTCTTTTAGACC 60.026 45.833 7.03 0.00 0.00 3.85
1935 3708 4.265904 TCGTGATTGCTCTTTTAGACCA 57.734 40.909 0.00 0.00 0.00 4.02
1936 3709 4.245660 TCGTGATTGCTCTTTTAGACCAG 58.754 43.478 0.00 0.00 0.00 4.00
1937 3710 3.181516 CGTGATTGCTCTTTTAGACCAGC 60.182 47.826 0.00 0.00 0.00 4.85
1938 3711 3.127721 GTGATTGCTCTTTTAGACCAGCC 59.872 47.826 0.00 0.00 0.00 4.85
1939 3712 2.949177 TTGCTCTTTTAGACCAGCCA 57.051 45.000 0.00 0.00 0.00 4.75
1940 3713 2.185004 TGCTCTTTTAGACCAGCCAC 57.815 50.000 0.00 0.00 0.00 5.01
1941 3714 1.419762 TGCTCTTTTAGACCAGCCACA 59.580 47.619 0.00 0.00 0.00 4.17
1942 3715 2.040278 TGCTCTTTTAGACCAGCCACAT 59.960 45.455 0.00 0.00 0.00 3.21
1943 3716 3.263170 TGCTCTTTTAGACCAGCCACATA 59.737 43.478 0.00 0.00 0.00 2.29
1944 3717 3.623510 GCTCTTTTAGACCAGCCACATAC 59.376 47.826 0.00 0.00 0.00 2.39
1945 3718 4.832248 CTCTTTTAGACCAGCCACATACA 58.168 43.478 0.00 0.00 0.00 2.29
1946 3719 4.575885 TCTTTTAGACCAGCCACATACAC 58.424 43.478 0.00 0.00 0.00 2.90
1947 3720 4.041075 TCTTTTAGACCAGCCACATACACA 59.959 41.667 0.00 0.00 0.00 3.72
1948 3721 4.568072 TTTAGACCAGCCACATACACAT 57.432 40.909 0.00 0.00 0.00 3.21
1949 3722 5.685520 TTTAGACCAGCCACATACACATA 57.314 39.130 0.00 0.00 0.00 2.29
1950 3723 3.543680 AGACCAGCCACATACACATAC 57.456 47.619 0.00 0.00 0.00 2.39
1951 3724 2.837591 AGACCAGCCACATACACATACA 59.162 45.455 0.00 0.00 0.00 2.29
1952 3725 2.936498 GACCAGCCACATACACATACAC 59.064 50.000 0.00 0.00 0.00 2.90
1953 3726 2.304470 ACCAGCCACATACACATACACA 59.696 45.455 0.00 0.00 0.00 3.72
1954 3727 3.054434 ACCAGCCACATACACATACACAT 60.054 43.478 0.00 0.00 0.00 3.21
1955 3728 4.163268 ACCAGCCACATACACATACACATA 59.837 41.667 0.00 0.00 0.00 2.29
1956 3729 5.163205 ACCAGCCACATACACATACACATAT 60.163 40.000 0.00 0.00 0.00 1.78
1957 3730 5.409520 CCAGCCACATACACATACACATATC 59.590 44.000 0.00 0.00 0.00 1.63
1958 3731 5.409520 CAGCCACATACACATACACATATCC 59.590 44.000 0.00 0.00 0.00 2.59
1959 3732 5.307976 AGCCACATACACATACACATATCCT 59.692 40.000 0.00 0.00 0.00 3.24
1960 3733 5.997746 GCCACATACACATACACATATCCTT 59.002 40.000 0.00 0.00 0.00 3.36
1961 3734 7.016170 AGCCACATACACATACACATATCCTTA 59.984 37.037 0.00 0.00 0.00 2.69
1962 3735 7.331934 GCCACATACACATACACATATCCTTAG 59.668 40.741 0.00 0.00 0.00 2.18
1963 3736 8.585018 CCACATACACATACACATATCCTTAGA 58.415 37.037 0.00 0.00 0.00 2.10
1964 3737 9.411801 CACATACACATACACATATCCTTAGAC 57.588 37.037 0.00 0.00 0.00 2.59
1965 3738 9.368416 ACATACACATACACATATCCTTAGACT 57.632 33.333 0.00 0.00 0.00 3.24
2015 3788 9.733556 AGTAATAAAAATGTGGTGTCATGTAGA 57.266 29.630 0.00 0.00 0.00 2.59
2016 3789 9.988350 GTAATAAAAATGTGGTGTCATGTAGAG 57.012 33.333 0.00 0.00 0.00 2.43
2017 3790 5.376854 AAAAATGTGGTGTCATGTAGAGC 57.623 39.130 0.00 0.00 0.00 4.09
2018 3791 3.988976 AATGTGGTGTCATGTAGAGCT 57.011 42.857 0.00 0.00 0.00 4.09
2019 3792 3.988976 ATGTGGTGTCATGTAGAGCTT 57.011 42.857 0.00 0.00 0.00 3.74
2020 3793 5.420725 AATGTGGTGTCATGTAGAGCTTA 57.579 39.130 0.00 0.00 0.00 3.09
2021 3794 4.882842 TGTGGTGTCATGTAGAGCTTAA 57.117 40.909 0.00 0.00 0.00 1.85
2022 3795 5.420725 TGTGGTGTCATGTAGAGCTTAAT 57.579 39.130 0.00 0.00 0.00 1.40
2023 3796 5.804639 TGTGGTGTCATGTAGAGCTTAATT 58.195 37.500 0.00 0.00 0.00 1.40
2024 3797 6.237901 TGTGGTGTCATGTAGAGCTTAATTT 58.762 36.000 0.00 0.00 0.00 1.82
2025 3798 7.390823 TGTGGTGTCATGTAGAGCTTAATTTA 58.609 34.615 0.00 0.00 0.00 1.40
2026 3799 8.046708 TGTGGTGTCATGTAGAGCTTAATTTAT 58.953 33.333 0.00 0.00 0.00 1.40
2027 3800 8.893727 GTGGTGTCATGTAGAGCTTAATTTATT 58.106 33.333 0.00 0.00 0.00 1.40
2093 3866 7.457868 GCTTTTGCCCCGTTTTATAAATAAAC 58.542 34.615 0.00 0.00 40.15 2.01
2099 3872 6.872547 GCCCCGTTTTATAAATAAACCAACAA 59.127 34.615 0.00 0.00 32.42 2.83
2101 3874 8.089597 CCCCGTTTTATAAATAAACCAACAACT 58.910 33.333 0.00 0.00 32.42 3.16
2102 3875 9.131416 CCCGTTTTATAAATAAACCAACAACTC 57.869 33.333 0.00 0.00 32.42 3.01
2167 3940 3.513912 TCTTACAAAGCCGATCCTGAGAA 59.486 43.478 0.00 0.00 0.00 2.87
2172 3945 1.799933 AGCCGATCCTGAGAAATCCT 58.200 50.000 0.00 0.00 0.00 3.24
2180 3953 2.306805 TCCTGAGAAATCCTGCACACAT 59.693 45.455 0.00 0.00 0.00 3.21
2185 3958 5.748402 TGAGAAATCCTGCACACATAGAAT 58.252 37.500 0.00 0.00 0.00 2.40
2199 3972 2.134201 TAGAATGCACGCGACTATGG 57.866 50.000 15.93 0.00 0.00 2.74
2209 3982 2.093869 ACGCGACTATGGTACCAACAAT 60.094 45.455 20.76 4.60 0.00 2.71
2220 3993 0.889186 ACCAACAATGAGCACCGGAC 60.889 55.000 9.46 0.00 0.00 4.79
2222 3995 1.671054 AACAATGAGCACCGGACGG 60.671 57.895 9.46 9.56 42.03 4.79
2246 4020 0.249398 AACACCCTCACGCTATGACC 59.751 55.000 0.00 0.00 32.37 4.02
2247 4021 0.614979 ACACCCTCACGCTATGACCT 60.615 55.000 0.00 0.00 32.37 3.85
2248 4022 1.341679 ACACCCTCACGCTATGACCTA 60.342 52.381 0.00 0.00 32.37 3.08
2249 4023 1.338337 CACCCTCACGCTATGACCTAG 59.662 57.143 0.00 0.00 32.37 3.02
2280 4054 4.681978 GCTCCACGACAACGCCCT 62.682 66.667 0.00 0.00 43.96 5.19
2281 4055 2.030562 CTCCACGACAACGCCCTT 59.969 61.111 0.00 0.00 43.96 3.95
2295 4069 3.100671 ACGCCCTTAAGAGAGAGAACAT 58.899 45.455 3.36 0.00 0.00 2.71
2300 4074 4.382040 CCCTTAAGAGAGAGAACATCGCAA 60.382 45.833 3.36 0.00 0.00 4.85
2333 4107 1.372997 CGAGTCCACACGGGTCAAG 60.373 63.158 0.00 0.00 38.11 3.02
2468 4242 3.476031 AACTCACCCGTGCCACCAG 62.476 63.158 0.00 0.00 0.00 4.00
2488 4273 2.126228 GGGACGCGACGATGTCAA 60.126 61.111 15.93 0.00 36.83 3.18
2490 4275 1.414897 GGACGCGACGATGTCAAAC 59.585 57.895 15.93 2.61 36.83 2.93
2497 4282 1.079503 GACGATGTCAAACCTCCAGC 58.920 55.000 0.00 0.00 32.09 4.85
2547 4334 4.509737 GCACGTCCGAGCTACCCC 62.510 72.222 1.84 0.00 0.00 4.95
2548 4335 3.066190 CACGTCCGAGCTACCCCA 61.066 66.667 0.00 0.00 0.00 4.96
2562 4349 2.589157 CCCCACGCAACACCTCCTA 61.589 63.158 0.00 0.00 0.00 2.94
2575 4362 1.640670 ACCTCCTATTGCCCACACAAT 59.359 47.619 0.00 0.00 42.73 2.71
2596 4383 4.694760 TCCAGGAGGATTATGTGTGATG 57.305 45.455 0.00 0.00 39.61 3.07
2597 4384 4.040047 TCCAGGAGGATTATGTGTGATGT 58.960 43.478 0.00 0.00 39.61 3.06
2598 4385 4.474651 TCCAGGAGGATTATGTGTGATGTT 59.525 41.667 0.00 0.00 39.61 2.71
2599 4386 5.665360 TCCAGGAGGATTATGTGTGATGTTA 59.335 40.000 0.00 0.00 39.61 2.41
2600 4387 6.157820 TCCAGGAGGATTATGTGTGATGTTAA 59.842 38.462 0.00 0.00 39.61 2.01
2601 4388 7.000472 CCAGGAGGATTATGTGTGATGTTAAT 59.000 38.462 0.00 0.00 36.89 1.40
2602 4389 7.173907 CCAGGAGGATTATGTGTGATGTTAATC 59.826 40.741 0.00 0.00 36.89 1.75
2603 4390 7.716560 CAGGAGGATTATGTGTGATGTTAATCA 59.283 37.037 0.00 0.00 40.61 2.57
2604 4391 8.443176 AGGAGGATTATGTGTGATGTTAATCAT 58.557 33.333 0.00 0.00 44.54 2.45
2605 4392 9.725019 GGAGGATTATGTGTGATGTTAATCATA 57.275 33.333 0.00 0.00 44.54 2.15
2627 4414 9.221933 TCATAGTATGAGTAACTAGCTAAGAGC 57.778 37.037 8.84 0.00 36.44 4.09
2628 4415 9.004717 CATAGTATGAGTAACTAGCTAAGAGCA 57.995 37.037 3.91 0.00 45.56 4.26
2629 4416 9.747898 ATAGTATGAGTAACTAGCTAAGAGCAT 57.252 33.333 0.64 0.00 45.56 3.79
2630 4417 8.106247 AGTATGAGTAACTAGCTAAGAGCATC 57.894 38.462 0.64 0.00 45.56 3.91
2645 4432 2.604914 GAGCATCTCCAACATACACACG 59.395 50.000 0.00 0.00 0.00 4.49
2646 4433 1.665679 GCATCTCCAACATACACACGG 59.334 52.381 0.00 0.00 0.00 4.94
2647 4434 2.935238 GCATCTCCAACATACACACGGT 60.935 50.000 0.00 0.00 0.00 4.83
2648 4435 2.736144 TCTCCAACATACACACGGTC 57.264 50.000 0.00 0.00 0.00 4.79
2649 4436 1.068125 TCTCCAACATACACACGGTCG 60.068 52.381 0.00 0.00 0.00 4.79
2650 4437 0.668096 TCCAACATACACACGGTCGC 60.668 55.000 0.00 0.00 0.00 5.19
2651 4438 1.414514 CAACATACACACGGTCGCG 59.585 57.895 0.00 0.00 0.00 5.87
2652 4439 2.377310 AACATACACACGGTCGCGC 61.377 57.895 0.00 0.00 0.00 6.86
2653 4440 2.506217 CATACACACGGTCGCGCT 60.506 61.111 5.56 0.00 0.00 5.92
2654 4441 1.226463 CATACACACGGTCGCGCTA 60.226 57.895 5.56 0.00 0.00 4.26
2655 4442 0.799152 CATACACACGGTCGCGCTAA 60.799 55.000 5.56 0.00 0.00 3.09
2656 4443 0.101759 ATACACACGGTCGCGCTAAT 59.898 50.000 5.56 0.00 0.00 1.73
2657 4444 0.109179 TACACACGGTCGCGCTAATT 60.109 50.000 5.56 0.00 0.00 1.40
2658 4445 0.947180 ACACACGGTCGCGCTAATTT 60.947 50.000 5.56 0.00 0.00 1.82
2659 4446 0.165079 CACACGGTCGCGCTAATTTT 59.835 50.000 5.56 0.00 0.00 1.82
2660 4447 0.869730 ACACGGTCGCGCTAATTTTT 59.130 45.000 5.56 0.00 0.00 1.94
2682 4469 7.475771 TTTTTAGAATGCTGAAATTGCGTTT 57.524 28.000 0.00 0.00 39.43 3.60
2683 4470 7.475771 TTTTAGAATGCTGAAATTGCGTTTT 57.524 28.000 0.00 0.00 39.43 2.43
2684 4471 6.689178 TTAGAATGCTGAAATTGCGTTTTC 57.311 33.333 4.65 4.65 39.43 2.29
2696 4483 4.676586 GTTTTCGCGCACGGGGTG 62.677 66.667 8.75 0.00 40.63 4.61
2715 4502 4.330960 GGTGGGGTGGGGGCATTT 62.331 66.667 0.00 0.00 0.00 2.32
2716 4503 2.203922 GTGGGGTGGGGGCATTTT 60.204 61.111 0.00 0.00 0.00 1.82
2717 4504 2.203907 TGGGGTGGGGGCATTTTG 60.204 61.111 0.00 0.00 0.00 2.44
2718 4505 3.716195 GGGGTGGGGGCATTTTGC 61.716 66.667 0.00 0.00 44.08 3.68
2719 4506 2.607442 GGGTGGGGGCATTTTGCT 60.607 61.111 0.00 0.00 44.28 3.91
2720 4507 2.223443 GGGTGGGGGCATTTTGCTT 61.223 57.895 0.00 0.00 44.28 3.91
2721 4508 1.760527 GGTGGGGGCATTTTGCTTT 59.239 52.632 0.00 0.00 44.28 3.51
2722 4509 0.606130 GGTGGGGGCATTTTGCTTTG 60.606 55.000 0.00 0.00 44.28 2.77
2723 4510 0.606130 GTGGGGGCATTTTGCTTTGG 60.606 55.000 0.00 0.00 44.28 3.28
2724 4511 1.675310 GGGGGCATTTTGCTTTGGC 60.675 57.895 0.00 0.00 44.28 4.52
2734 4521 3.578456 GCTTTGGCAGAAGCGCTA 58.422 55.556 12.05 0.00 42.17 4.26
2735 4522 2.101700 GCTTTGGCAGAAGCGCTAT 58.898 52.632 12.05 0.00 42.17 2.97
2736 4523 1.299541 GCTTTGGCAGAAGCGCTATA 58.700 50.000 12.05 0.00 42.17 1.31
2737 4524 1.876156 GCTTTGGCAGAAGCGCTATAT 59.124 47.619 12.05 0.00 42.17 0.86
2738 4525 2.291741 GCTTTGGCAGAAGCGCTATATT 59.708 45.455 12.05 0.00 42.17 1.28
2739 4526 3.243201 GCTTTGGCAGAAGCGCTATATTT 60.243 43.478 12.05 0.00 42.17 1.40
2740 4527 3.969117 TTGGCAGAAGCGCTATATTTG 57.031 42.857 12.05 1.27 43.41 2.32
2741 4528 2.221169 TGGCAGAAGCGCTATATTTGG 58.779 47.619 12.05 0.00 43.41 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.251016 TCTCATCTTCATCGGATCCCT 57.749 47.619 6.06 0.00 0.00 4.20
75 76 4.533919 ACATCTCATCTTCATCGGATCC 57.466 45.455 0.00 0.00 0.00 3.36
124 125 7.523293 TTTTTCATGCATGTCCTCTCTTTTA 57.477 32.000 25.43 0.00 0.00 1.52
433 443 9.998381 GAAAAATACCACACGCTTTTAATTTAC 57.002 29.630 0.00 0.00 0.00 2.01
490 502 7.148373 GCGTGGACCAAAATTCATTAGTAACTA 60.148 37.037 0.00 0.00 0.00 2.24
491 503 6.349033 GCGTGGACCAAAATTCATTAGTAACT 60.349 38.462 0.00 0.00 0.00 2.24
492 504 5.798434 GCGTGGACCAAAATTCATTAGTAAC 59.202 40.000 0.00 0.00 0.00 2.50
493 505 5.708230 AGCGTGGACCAAAATTCATTAGTAA 59.292 36.000 0.00 0.00 0.00 2.24
494 506 5.250200 AGCGTGGACCAAAATTCATTAGTA 58.750 37.500 0.00 0.00 0.00 1.82
495 507 4.079253 AGCGTGGACCAAAATTCATTAGT 58.921 39.130 0.00 0.00 0.00 2.24
496 508 4.701956 AGCGTGGACCAAAATTCATTAG 57.298 40.909 0.00 0.00 0.00 1.73
497 509 6.576662 TTTAGCGTGGACCAAAATTCATTA 57.423 33.333 0.00 0.00 0.00 1.90
498 510 5.461032 TTTAGCGTGGACCAAAATTCATT 57.539 34.783 0.00 0.00 0.00 2.57
499 511 4.618227 GCTTTAGCGTGGACCAAAATTCAT 60.618 41.667 0.00 0.00 0.00 2.57
500 512 3.305064 GCTTTAGCGTGGACCAAAATTCA 60.305 43.478 0.00 0.00 0.00 2.57
501 513 3.242518 GCTTTAGCGTGGACCAAAATTC 58.757 45.455 0.00 0.00 0.00 2.17
502 514 3.297830 GCTTTAGCGTGGACCAAAATT 57.702 42.857 0.00 0.00 0.00 1.82
515 527 3.875125 ACACTTAGGCCTTAGCTTTAGC 58.125 45.455 18.66 0.00 39.73 3.09
517 529 6.383147 AGTCATACACTTAGGCCTTAGCTTTA 59.617 38.462 18.66 7.73 32.54 1.85
518 530 5.189934 AGTCATACACTTAGGCCTTAGCTTT 59.810 40.000 18.66 5.72 32.54 3.51
519 531 4.717280 AGTCATACACTTAGGCCTTAGCTT 59.283 41.667 18.66 8.20 32.54 3.74
521 533 4.674281 AGTCATACACTTAGGCCTTAGC 57.326 45.455 18.66 0.59 31.33 3.09
522 534 5.978814 ACAAGTCATACACTTAGGCCTTAG 58.021 41.667 12.58 15.37 44.14 2.18
523 535 5.393787 CGACAAGTCATACACTTAGGCCTTA 60.394 44.000 12.58 0.00 44.14 2.69
526 538 3.187700 CGACAAGTCATACACTTAGGCC 58.812 50.000 0.00 0.00 44.14 5.19
527 539 2.603560 GCGACAAGTCATACACTTAGGC 59.396 50.000 0.72 0.00 44.14 3.93
528 540 3.845178 TGCGACAAGTCATACACTTAGG 58.155 45.455 0.72 0.00 44.14 2.69
529 541 4.486090 ACTGCGACAAGTCATACACTTAG 58.514 43.478 0.72 0.00 44.14 2.18
530 542 4.482386 GACTGCGACAAGTCATACACTTA 58.518 43.478 8.07 0.00 44.14 2.24
533 545 1.649171 CGACTGCGACAAGTCATACAC 59.351 52.381 12.10 0.00 45.77 2.90
609 621 5.301045 CGTAGAATAGAGTGGAATGGTGGTA 59.699 44.000 0.00 0.00 0.00 3.25
613 625 3.069729 GGCGTAGAATAGAGTGGAATGGT 59.930 47.826 0.00 0.00 0.00 3.55
714 754 4.767255 GTGGAGGCGTGAGGGCAG 62.767 72.222 0.66 0.00 45.36 4.85
819 1554 1.815003 GAACGGAAGGAGTACGAGGAA 59.185 52.381 0.00 0.00 0.00 3.36
830 1565 6.509677 GCTGATAAGTATTTTCGAACGGAAGG 60.510 42.308 0.00 0.00 35.70 3.46
831 1566 6.411652 GCTGATAAGTATTTTCGAACGGAAG 58.588 40.000 0.00 0.00 35.70 3.46
834 1569 4.317839 CCGCTGATAAGTATTTTCGAACGG 60.318 45.833 0.00 0.00 34.35 4.44
835 1570 4.501559 TCCGCTGATAAGTATTTTCGAACG 59.498 41.667 0.00 0.00 0.00 3.95
836 1571 5.961395 TCCGCTGATAAGTATTTTCGAAC 57.039 39.130 0.00 0.00 0.00 3.95
838 1573 5.465390 CCATTCCGCTGATAAGTATTTTCGA 59.535 40.000 0.00 0.00 0.00 3.71
840 1575 6.861065 TCCATTCCGCTGATAAGTATTTTC 57.139 37.500 0.00 0.00 0.00 2.29
841 1576 6.772716 ACATCCATTCCGCTGATAAGTATTTT 59.227 34.615 0.00 0.00 0.00 1.82
842 1577 6.299141 ACATCCATTCCGCTGATAAGTATTT 58.701 36.000 0.00 0.00 0.00 1.40
843 1578 5.869579 ACATCCATTCCGCTGATAAGTATT 58.130 37.500 0.00 0.00 0.00 1.89
844 1579 5.489792 ACATCCATTCCGCTGATAAGTAT 57.510 39.130 0.00 0.00 0.00 2.12
845 1580 4.955811 ACATCCATTCCGCTGATAAGTA 57.044 40.909 0.00 0.00 0.00 2.24
846 1581 3.845781 ACATCCATTCCGCTGATAAGT 57.154 42.857 0.00 0.00 0.00 2.24
849 1584 6.095580 GTCTAGATACATCCATTCCGCTGATA 59.904 42.308 0.00 0.00 0.00 2.15
852 1587 4.489810 GTCTAGATACATCCATTCCGCTG 58.510 47.826 0.00 0.00 0.00 5.18
853 1588 3.191581 CGTCTAGATACATCCATTCCGCT 59.808 47.826 0.00 0.00 0.00 5.52
887 1622 9.337396 AGAAATGCGTAAAAATGGATGTATCTA 57.663 29.630 0.00 0.00 0.00 1.98
888 1623 8.225603 AGAAATGCGTAAAAATGGATGTATCT 57.774 30.769 0.00 0.00 0.00 1.98
889 1624 8.856490 AAGAAATGCGTAAAAATGGATGTATC 57.144 30.769 0.00 0.00 0.00 2.24
890 1625 7.643764 CGAAGAAATGCGTAAAAATGGATGTAT 59.356 33.333 0.00 0.00 0.00 2.29
891 1626 6.964370 CGAAGAAATGCGTAAAAATGGATGTA 59.036 34.615 0.00 0.00 0.00 2.29
892 1627 5.799936 CGAAGAAATGCGTAAAAATGGATGT 59.200 36.000 0.00 0.00 0.00 3.06
893 1628 6.027131 TCGAAGAAATGCGTAAAAATGGATG 58.973 36.000 0.00 0.00 0.00 3.51
894 1629 6.189677 TCGAAGAAATGCGTAAAAATGGAT 57.810 33.333 0.00 0.00 0.00 3.41
896 1631 7.962934 TTATCGAAGAAATGCGTAAAAATGG 57.037 32.000 0.00 0.00 43.58 3.16
903 1638 9.575702 CGAAAATATTTATCGAAGAAATGCGTA 57.424 29.630 19.29 0.76 43.58 4.42
904 1639 8.332464 TCGAAAATATTTATCGAAGAAATGCGT 58.668 29.630 22.01 3.30 43.58 5.24
905 1640 8.693948 TCGAAAATATTTATCGAAGAAATGCG 57.306 30.769 22.01 11.57 43.58 4.73
914 1649 5.693104 CCCTCCGTTCGAAAATATTTATCGA 59.307 40.000 21.14 21.14 43.18 3.59
915 1650 5.693104 TCCCTCCGTTCGAAAATATTTATCG 59.307 40.000 18.54 18.54 37.90 2.92
917 1652 6.589135 ACTCCCTCCGTTCGAAAATATTTAT 58.411 36.000 0.00 0.00 0.00 1.40
918 1653 5.981174 ACTCCCTCCGTTCGAAAATATTTA 58.019 37.500 0.00 0.00 0.00 1.40
920 1655 4.482952 ACTCCCTCCGTTCGAAAATATT 57.517 40.909 0.00 0.00 0.00 1.28
921 1656 4.202192 GGTACTCCCTCCGTTCGAAAATAT 60.202 45.833 0.00 0.00 0.00 1.28
922 1657 3.131046 GGTACTCCCTCCGTTCGAAAATA 59.869 47.826 0.00 0.00 0.00 1.40
923 1658 2.093816 GGTACTCCCTCCGTTCGAAAAT 60.094 50.000 0.00 0.00 0.00 1.82
924 1659 1.273327 GGTACTCCCTCCGTTCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
925 1660 0.890683 GGTACTCCCTCCGTTCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
926 1661 0.038744 AGGTACTCCCTCCGTTCGAA 59.961 55.000 0.00 0.00 40.71 3.71
927 1662 0.911769 TAGGTACTCCCTCCGTTCGA 59.088 55.000 0.00 0.00 44.81 3.71
928 1663 1.020437 GTAGGTACTCCCTCCGTTCG 58.980 60.000 0.00 0.00 44.81 3.95
929 1664 2.433662 AGTAGGTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 44.81 3.95
931 1666 1.142667 GCTAGTAGGTACTCCCTCCGT 59.857 57.143 0.00 0.00 44.81 4.69
932 1667 1.545204 GGCTAGTAGGTACTCCCTCCG 60.545 61.905 0.00 0.00 44.81 4.63
934 1669 2.175284 AGTGGCTAGTAGGTACTCCCTC 59.825 54.545 0.00 0.00 44.81 4.30
936 1671 2.752075 AGTGGCTAGTAGGTACTCCC 57.248 55.000 0.00 0.00 41.75 4.30
937 1672 3.137533 CGTAGTGGCTAGTAGGTACTCC 58.862 54.545 0.00 0.00 41.75 3.85
938 1673 3.802866 ACGTAGTGGCTAGTAGGTACTC 58.197 50.000 8.34 0.00 42.51 2.59
954 1689 2.067013 TCAGACACTCACTCGACGTAG 58.933 52.381 0.00 0.00 0.00 3.51
955 1690 2.159327 TCAGACACTCACTCGACGTA 57.841 50.000 0.00 0.00 0.00 3.57
956 1691 1.465387 GATCAGACACTCACTCGACGT 59.535 52.381 0.00 0.00 0.00 4.34
957 1692 1.527995 CGATCAGACACTCACTCGACG 60.528 57.143 0.00 0.00 0.00 5.12
958 1693 1.202087 CCGATCAGACACTCACTCGAC 60.202 57.143 0.00 0.00 0.00 4.20
959 1694 1.087501 CCGATCAGACACTCACTCGA 58.912 55.000 0.00 0.00 0.00 4.04
960 1695 0.805614 ACCGATCAGACACTCACTCG 59.194 55.000 0.00 0.00 0.00 4.18
962 1697 1.746220 GCTACCGATCAGACACTCACT 59.254 52.381 0.00 0.00 0.00 3.41
963 1698 1.746220 AGCTACCGATCAGACACTCAC 59.254 52.381 0.00 0.00 0.00 3.51
964 1699 1.745653 CAGCTACCGATCAGACACTCA 59.254 52.381 0.00 0.00 0.00 3.41
965 1700 1.535015 GCAGCTACCGATCAGACACTC 60.535 57.143 0.00 0.00 0.00 3.51
966 1701 0.457851 GCAGCTACCGATCAGACACT 59.542 55.000 0.00 0.00 0.00 3.55
969 1704 2.544069 GGTTAGCAGCTACCGATCAGAC 60.544 54.545 0.00 0.00 0.00 3.51
970 1705 1.681793 GGTTAGCAGCTACCGATCAGA 59.318 52.381 0.00 0.00 0.00 3.27
971 1706 1.683917 AGGTTAGCAGCTACCGATCAG 59.316 52.381 0.00 0.00 0.00 2.90
1041 2707 2.433318 AGAAGAAGCACGCCGAGC 60.433 61.111 0.00 0.00 0.00 5.03
1083 2764 2.174969 GTCGCCCACGTTGAACACA 61.175 57.895 0.00 0.00 41.18 3.72
1107 2788 1.150536 GGTGTTGAAGGACCAGCCA 59.849 57.895 0.00 0.00 40.02 4.75
1175 2856 8.202137 TCTTCATTACAACCAGCCTAATACTAC 58.798 37.037 0.00 0.00 0.00 2.73
1176 2857 8.313944 TCTTCATTACAACCAGCCTAATACTA 57.686 34.615 0.00 0.00 0.00 1.82
1177 2858 7.092846 ACTCTTCATTACAACCAGCCTAATACT 60.093 37.037 0.00 0.00 0.00 2.12
1178 2859 7.048512 ACTCTTCATTACAACCAGCCTAATAC 58.951 38.462 0.00 0.00 0.00 1.89
1179 2860 7.195374 ACTCTTCATTACAACCAGCCTAATA 57.805 36.000 0.00 0.00 0.00 0.98
1180 2861 6.067217 ACTCTTCATTACAACCAGCCTAAT 57.933 37.500 0.00 0.00 0.00 1.73
1182 2863 6.382859 TGATACTCTTCATTACAACCAGCCTA 59.617 38.462 0.00 0.00 0.00 3.93
1183 2864 5.189736 TGATACTCTTCATTACAACCAGCCT 59.810 40.000 0.00 0.00 0.00 4.58
1184 2865 5.428253 TGATACTCTTCATTACAACCAGCC 58.572 41.667 0.00 0.00 0.00 4.85
1185 2866 6.540189 ACATGATACTCTTCATTACAACCAGC 59.460 38.462 0.00 0.00 34.09 4.85
1186 2867 9.770097 ATACATGATACTCTTCATTACAACCAG 57.230 33.333 0.00 0.00 34.09 4.00
1285 2966 9.480053 GTCATGCATGGCAATAAATAAAGTATT 57.520 29.630 26.04 0.00 43.62 1.89
1286 2967 8.640651 TGTCATGCATGGCAATAAATAAAGTAT 58.359 29.630 30.82 0.00 43.62 2.12
1287 2968 7.920151 GTGTCATGCATGGCAATAAATAAAGTA 59.080 33.333 34.01 5.25 44.94 2.24
1288 2969 6.757947 GTGTCATGCATGGCAATAAATAAAGT 59.242 34.615 34.01 0.00 44.94 2.66
1289 2970 6.757478 TGTGTCATGCATGGCAATAAATAAAG 59.243 34.615 34.01 0.00 44.94 1.85
1290 2971 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
1291 2972 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
1292 2973 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
1293 2974 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
1294 2975 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
1295 2976 4.888823 ACTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
1296 2977 4.463070 ACTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 27.05 44.94 1.90
1297 2978 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
1298 2979 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
1299 2980 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
1300 2981 2.225019 GCTACTATGTGTCATGCATGGC 59.775 50.000 24.40 24.40 0.00 4.40
1301 2982 3.469739 TGCTACTATGTGTCATGCATGG 58.530 45.455 25.97 10.76 0.00 3.66
1302 2983 5.163884 GCTATGCTACTATGTGTCATGCATG 60.164 44.000 21.07 21.07 39.07 4.06
1303 2984 4.934001 GCTATGCTACTATGTGTCATGCAT 59.066 41.667 0.00 0.00 40.50 3.96
1304 2985 4.202243 TGCTATGCTACTATGTGTCATGCA 60.202 41.667 0.00 0.00 35.34 3.96
1305 2986 4.309933 TGCTATGCTACTATGTGTCATGC 58.690 43.478 0.00 0.00 0.00 4.06
1306 2987 7.430992 AAATGCTATGCTACTATGTGTCATG 57.569 36.000 0.00 0.00 0.00 3.07
1307 2988 9.730705 AATAAATGCTATGCTACTATGTGTCAT 57.269 29.630 0.00 0.00 0.00 3.06
1316 2997 9.534565 CCGTATCATAATAAATGCTATGCTACT 57.465 33.333 0.00 0.00 30.34 2.57
1317 2998 9.314321 ACCGTATCATAATAAATGCTATGCTAC 57.686 33.333 0.00 0.00 0.00 3.58
1338 3019 9.170734 GGTTGAGTAGTATATCATGATACCGTA 57.829 37.037 17.60 4.15 33.47 4.02
1339 3020 7.889073 AGGTTGAGTAGTATATCATGATACCGT 59.111 37.037 17.60 5.13 33.47 4.83
1340 3021 8.282455 AGGTTGAGTAGTATATCATGATACCG 57.718 38.462 17.60 0.00 33.47 4.02
1341 3022 8.688151 GGAGGTTGAGTAGTATATCATGATACC 58.312 40.741 17.60 12.36 33.47 2.73
1342 3023 9.469097 AGGAGGTTGAGTAGTATATCATGATAC 57.531 37.037 17.60 8.94 33.23 2.24
1343 3024 9.688091 GAGGAGGTTGAGTAGTATATCATGATA 57.312 37.037 17.56 17.56 0.00 2.15
1344 3025 8.397957 AGAGGAGGTTGAGTAGTATATCATGAT 58.602 37.037 13.81 13.81 0.00 2.45
1345 3026 7.760607 AGAGGAGGTTGAGTAGTATATCATGA 58.239 38.462 0.00 0.00 0.00 3.07
1346 3027 8.415950 AAGAGGAGGTTGAGTAGTATATCATG 57.584 38.462 0.00 0.00 0.00 3.07
1347 3028 9.084533 GAAAGAGGAGGTTGAGTAGTATATCAT 57.915 37.037 0.00 0.00 0.00 2.45
1348 3029 8.282982 AGAAAGAGGAGGTTGAGTAGTATATCA 58.717 37.037 0.00 0.00 0.00 2.15
1349 3030 8.700439 AGAAAGAGGAGGTTGAGTAGTATATC 57.300 38.462 0.00 0.00 0.00 1.63
1350 3031 9.138596 GAAGAAAGAGGAGGTTGAGTAGTATAT 57.861 37.037 0.00 0.00 0.00 0.86
1351 3032 8.114102 TGAAGAAAGAGGAGGTTGAGTAGTATA 58.886 37.037 0.00 0.00 0.00 1.47
1352 3033 6.954684 TGAAGAAAGAGGAGGTTGAGTAGTAT 59.045 38.462 0.00 0.00 0.00 2.12
1353 3034 6.312529 TGAAGAAAGAGGAGGTTGAGTAGTA 58.687 40.000 0.00 0.00 0.00 1.82
1354 3035 5.148502 TGAAGAAAGAGGAGGTTGAGTAGT 58.851 41.667 0.00 0.00 0.00 2.73
1355 3036 5.730296 TGAAGAAAGAGGAGGTTGAGTAG 57.270 43.478 0.00 0.00 0.00 2.57
1356 3037 6.688073 AATGAAGAAAGAGGAGGTTGAGTA 57.312 37.500 0.00 0.00 0.00 2.59
1357 3038 5.574970 AATGAAGAAAGAGGAGGTTGAGT 57.425 39.130 0.00 0.00 0.00 3.41
1358 3039 7.986085 TTAAATGAAGAAAGAGGAGGTTGAG 57.014 36.000 0.00 0.00 0.00 3.02
1359 3040 8.940397 AATTAAATGAAGAAAGAGGAGGTTGA 57.060 30.769 0.00 0.00 0.00 3.18
1360 3041 9.018582 AGAATTAAATGAAGAAAGAGGAGGTTG 57.981 33.333 0.00 0.00 0.00 3.77
1362 3043 9.898152 CTAGAATTAAATGAAGAAAGAGGAGGT 57.102 33.333 0.00 0.00 0.00 3.85
1374 3055 9.958180 TGATGAGGTGTTCTAGAATTAAATGAA 57.042 29.630 8.75 0.00 0.00 2.57
1375 3056 9.958180 TTGATGAGGTGTTCTAGAATTAAATGA 57.042 29.630 8.75 0.00 0.00 2.57
1381 3062 8.031277 GCAATTTTGATGAGGTGTTCTAGAATT 58.969 33.333 8.75 0.00 0.00 2.17
1382 3063 7.363268 GGCAATTTTGATGAGGTGTTCTAGAAT 60.363 37.037 8.75 0.00 0.00 2.40
1383 3064 6.071952 GGCAATTTTGATGAGGTGTTCTAGAA 60.072 38.462 0.00 0.00 0.00 2.10
1384 3065 5.415701 GGCAATTTTGATGAGGTGTTCTAGA 59.584 40.000 0.00 0.00 0.00 2.43
1385 3066 5.183713 TGGCAATTTTGATGAGGTGTTCTAG 59.816 40.000 0.00 0.00 0.00 2.43
1386 3067 5.076182 TGGCAATTTTGATGAGGTGTTCTA 58.924 37.500 0.00 0.00 0.00 2.10
1387 3068 3.896888 TGGCAATTTTGATGAGGTGTTCT 59.103 39.130 0.00 0.00 0.00 3.01
1388 3069 4.240096 CTGGCAATTTTGATGAGGTGTTC 58.760 43.478 0.00 0.00 0.00 3.18
1389 3070 3.642848 ACTGGCAATTTTGATGAGGTGTT 59.357 39.130 0.00 0.00 0.00 3.32
1390 3071 3.233507 ACTGGCAATTTTGATGAGGTGT 58.766 40.909 0.00 0.00 0.00 4.16
1391 3072 3.947910 ACTGGCAATTTTGATGAGGTG 57.052 42.857 0.00 0.00 0.00 4.00
1392 3073 6.610075 ATTAACTGGCAATTTTGATGAGGT 57.390 33.333 0.00 0.00 0.00 3.85
1393 3074 7.170320 GCATATTAACTGGCAATTTTGATGAGG 59.830 37.037 0.00 0.00 0.00 3.86
1394 3075 7.707464 TGCATATTAACTGGCAATTTTGATGAG 59.293 33.333 0.00 0.00 32.54 2.90
1395 3076 7.554211 TGCATATTAACTGGCAATTTTGATGA 58.446 30.769 0.00 0.00 32.54 2.92
1396 3077 7.773864 TGCATATTAACTGGCAATTTTGATG 57.226 32.000 0.00 0.00 32.54 3.07
1404 3085 8.946085 GCTAGTATTATGCATATTAACTGGCAA 58.054 33.333 27.95 9.34 40.02 4.52
1405 3086 8.321353 AGCTAGTATTATGCATATTAACTGGCA 58.679 33.333 30.90 11.17 41.00 4.92
1406 3087 8.723942 AGCTAGTATTATGCATATTAACTGGC 57.276 34.615 26.83 26.83 0.00 4.85
1415 3096 9.053840 GGAGTATCGTAGCTAGTATTATGCATA 57.946 37.037 1.16 1.16 34.37 3.14
1416 3097 7.013464 GGGAGTATCGTAGCTAGTATTATGCAT 59.987 40.741 3.79 3.79 34.37 3.96
1417 3098 6.318144 GGGAGTATCGTAGCTAGTATTATGCA 59.682 42.308 0.00 0.00 34.37 3.96
1418 3099 6.318144 TGGGAGTATCGTAGCTAGTATTATGC 59.682 42.308 0.00 0.00 34.37 3.14
1419 3100 7.860918 TGGGAGTATCGTAGCTAGTATTATG 57.139 40.000 0.00 0.00 34.37 1.90
1421 3102 9.388506 GTAATGGGAGTATCGTAGCTAGTATTA 57.611 37.037 0.00 0.00 34.37 0.98
1422 3103 7.065563 CGTAATGGGAGTATCGTAGCTAGTATT 59.934 40.741 0.00 0.00 34.37 1.89
1423 3104 6.538021 CGTAATGGGAGTATCGTAGCTAGTAT 59.462 42.308 0.00 0.00 34.37 2.12
1424 3105 5.871524 CGTAATGGGAGTATCGTAGCTAGTA 59.128 44.000 0.00 0.00 34.37 1.82
1425 3106 4.694509 CGTAATGGGAGTATCGTAGCTAGT 59.305 45.833 0.00 0.00 34.37 2.57
1426 3107 4.934001 TCGTAATGGGAGTATCGTAGCTAG 59.066 45.833 0.00 0.00 34.37 3.42
1427 3108 4.692625 GTCGTAATGGGAGTATCGTAGCTA 59.307 45.833 0.00 0.00 34.37 3.32
1428 3109 3.501445 GTCGTAATGGGAGTATCGTAGCT 59.499 47.826 0.00 0.00 34.37 3.32
1429 3110 3.365767 GGTCGTAATGGGAGTATCGTAGC 60.366 52.174 0.00 0.00 34.37 3.58
1430 3111 3.817084 TGGTCGTAATGGGAGTATCGTAG 59.183 47.826 0.00 0.00 34.37 3.51
1431 3112 3.817084 CTGGTCGTAATGGGAGTATCGTA 59.183 47.826 0.00 0.00 34.37 3.43
1432 3113 2.621998 CTGGTCGTAATGGGAGTATCGT 59.378 50.000 0.00 0.00 34.37 3.73
1433 3114 2.607282 GCTGGTCGTAATGGGAGTATCG 60.607 54.545 0.00 0.00 34.37 2.92
1434 3115 2.288886 GGCTGGTCGTAATGGGAGTATC 60.289 54.545 0.00 0.00 0.00 2.24
1435 3116 1.692519 GGCTGGTCGTAATGGGAGTAT 59.307 52.381 0.00 0.00 0.00 2.12
1436 3117 1.117150 GGCTGGTCGTAATGGGAGTA 58.883 55.000 0.00 0.00 0.00 2.59
1437 3118 0.617820 AGGCTGGTCGTAATGGGAGT 60.618 55.000 0.00 0.00 0.00 3.85
1438 3119 0.541863 AAGGCTGGTCGTAATGGGAG 59.458 55.000 0.00 0.00 0.00 4.30
1439 3120 1.483415 GTAAGGCTGGTCGTAATGGGA 59.517 52.381 0.00 0.00 0.00 4.37
1440 3121 1.208535 TGTAAGGCTGGTCGTAATGGG 59.791 52.381 0.00 0.00 0.00 4.00
1441 3122 2.093658 AGTGTAAGGCTGGTCGTAATGG 60.094 50.000 0.00 0.00 0.00 3.16
1442 3123 3.187700 GAGTGTAAGGCTGGTCGTAATG 58.812 50.000 0.00 0.00 0.00 1.90
1443 3124 2.159282 CGAGTGTAAGGCTGGTCGTAAT 60.159 50.000 0.00 0.00 0.00 1.89
1444 3125 1.200716 CGAGTGTAAGGCTGGTCGTAA 59.799 52.381 0.00 0.00 0.00 3.18
1445 3126 0.806868 CGAGTGTAAGGCTGGTCGTA 59.193 55.000 0.00 0.00 0.00 3.43
1446 3127 1.177256 ACGAGTGTAAGGCTGGTCGT 61.177 55.000 0.00 0.00 35.90 4.34
1447 3128 0.456312 GACGAGTGTAAGGCTGGTCG 60.456 60.000 0.00 0.00 33.41 4.79
1448 3129 0.108756 GGACGAGTGTAAGGCTGGTC 60.109 60.000 0.00 0.00 39.78 4.02
1449 3130 1.542187 GGGACGAGTGTAAGGCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
1450 3131 1.218316 GGGACGAGTGTAAGGCTGG 59.782 63.158 0.00 0.00 0.00 4.85
1451 3132 0.108615 CAGGGACGAGTGTAAGGCTG 60.109 60.000 0.00 0.00 0.00 4.85
1452 3133 1.889530 GCAGGGACGAGTGTAAGGCT 61.890 60.000 0.00 0.00 0.00 4.58
1453 3134 1.448013 GCAGGGACGAGTGTAAGGC 60.448 63.158 0.00 0.00 0.00 4.35
1454 3135 0.320374 TTGCAGGGACGAGTGTAAGG 59.680 55.000 0.00 0.00 0.00 2.69
1455 3136 2.386661 ATTGCAGGGACGAGTGTAAG 57.613 50.000 0.00 0.00 0.00 2.34
1494 3193 4.335400 TGCATGCAGGATAGTAAATCGA 57.665 40.909 18.46 0.00 0.00 3.59
1495 3194 4.612259 GCTTGCATGCAGGATAGTAAATCG 60.612 45.833 31.67 0.29 0.00 3.34
1496 3195 4.518211 AGCTTGCATGCAGGATAGTAAATC 59.482 41.667 31.67 11.50 34.99 2.17
1500 3199 4.687901 TTAGCTTGCATGCAGGATAGTA 57.312 40.909 31.67 14.08 34.99 1.82
1501 3200 3.565764 TTAGCTTGCATGCAGGATAGT 57.434 42.857 31.67 15.13 34.99 2.12
1517 3216 2.281762 CACGCGTCAAAGGTCTATTAGC 59.718 50.000 9.86 0.00 0.00 3.09
1533 3232 0.111266 GTACTTGAACACTGCACGCG 60.111 55.000 3.53 3.53 0.00 6.01
1624 3364 1.203994 GCGCCTGACTTGTAGACCTTA 59.796 52.381 0.00 0.00 0.00 2.69
1761 3525 2.847901 CTCGTCGTGTCACGTAAAGAT 58.152 47.619 23.82 0.00 43.14 2.40
1882 3655 5.307196 AGTGGGAGAACAAATAGTACACACT 59.693 40.000 0.00 0.00 37.61 3.55
1897 3670 1.032794 CGATCGATGGAGTGGGAGAA 58.967 55.000 10.26 0.00 0.00 2.87
1899 3672 0.031314 CACGATCGATGGAGTGGGAG 59.969 60.000 24.34 0.00 0.00 4.30
1925 3698 4.323417 TGTGTATGTGGCTGGTCTAAAAG 58.677 43.478 0.00 0.00 0.00 2.27
1931 3704 2.936498 GTGTATGTGTATGTGGCTGGTC 59.064 50.000 0.00 0.00 0.00 4.02
1932 3705 2.304470 TGTGTATGTGTATGTGGCTGGT 59.696 45.455 0.00 0.00 0.00 4.00
1933 3706 2.984562 TGTGTATGTGTATGTGGCTGG 58.015 47.619 0.00 0.00 0.00 4.85
1934 3707 5.409520 GGATATGTGTATGTGTATGTGGCTG 59.590 44.000 0.00 0.00 0.00 4.85
1935 3708 5.307976 AGGATATGTGTATGTGTATGTGGCT 59.692 40.000 0.00 0.00 0.00 4.75
1936 3709 5.551233 AGGATATGTGTATGTGTATGTGGC 58.449 41.667 0.00 0.00 0.00 5.01
1937 3710 8.585018 TCTAAGGATATGTGTATGTGTATGTGG 58.415 37.037 0.00 0.00 0.00 4.17
1938 3711 9.411801 GTCTAAGGATATGTGTATGTGTATGTG 57.588 37.037 0.00 0.00 0.00 3.21
1939 3712 9.368416 AGTCTAAGGATATGTGTATGTGTATGT 57.632 33.333 0.00 0.00 0.00 2.29
1989 3762 9.733556 TCTACATGACACCACATTTTTATTACT 57.266 29.630 0.00 0.00 0.00 2.24
1990 3763 9.988350 CTCTACATGACACCACATTTTTATTAC 57.012 33.333 0.00 0.00 0.00 1.89
1991 3764 8.673711 GCTCTACATGACACCACATTTTTATTA 58.326 33.333 0.00 0.00 0.00 0.98
1992 3765 7.394359 AGCTCTACATGACACCACATTTTTATT 59.606 33.333 0.00 0.00 0.00 1.40
1993 3766 6.886459 AGCTCTACATGACACCACATTTTTAT 59.114 34.615 0.00 0.00 0.00 1.40
1994 3767 6.237901 AGCTCTACATGACACCACATTTTTA 58.762 36.000 0.00 0.00 0.00 1.52
1995 3768 5.072741 AGCTCTACATGACACCACATTTTT 58.927 37.500 0.00 0.00 0.00 1.94
1996 3769 4.655963 AGCTCTACATGACACCACATTTT 58.344 39.130 0.00 0.00 0.00 1.82
1997 3770 4.292186 AGCTCTACATGACACCACATTT 57.708 40.909 0.00 0.00 0.00 2.32
1998 3771 3.988976 AGCTCTACATGACACCACATT 57.011 42.857 0.00 0.00 0.00 2.71
1999 3772 3.988976 AAGCTCTACATGACACCACAT 57.011 42.857 0.00 0.00 0.00 3.21
2000 3773 4.882842 TTAAGCTCTACATGACACCACA 57.117 40.909 0.00 0.00 0.00 4.17
2001 3774 6.743575 AAATTAAGCTCTACATGACACCAC 57.256 37.500 0.00 0.00 0.00 4.16
2049 3822 8.893727 GCAAAAGCCTATTTCAAGAGATACTAA 58.106 33.333 0.00 0.00 0.00 2.24
2050 3823 7.499232 GGCAAAAGCCTATTTCAAGAGATACTA 59.501 37.037 0.00 0.00 0.00 1.82
2051 3824 6.319911 GGCAAAAGCCTATTTCAAGAGATACT 59.680 38.462 0.00 0.00 0.00 2.12
2052 3825 6.460261 GGGCAAAAGCCTATTTCAAGAGATAC 60.460 42.308 6.45 0.00 0.00 2.24
2053 3826 5.594317 GGGCAAAAGCCTATTTCAAGAGATA 59.406 40.000 6.45 0.00 0.00 1.98
2054 3827 4.403752 GGGCAAAAGCCTATTTCAAGAGAT 59.596 41.667 6.45 0.00 0.00 2.75
2060 3833 1.181786 CGGGGCAAAAGCCTATTTCA 58.818 50.000 6.45 0.00 0.00 2.69
2093 3866 4.783242 CCGTGTATTTCTTGAGTTGTTGG 58.217 43.478 0.00 0.00 0.00 3.77
2099 3872 2.851263 TGGCCGTGTATTTCTTGAGT 57.149 45.000 0.00 0.00 0.00 3.41
2101 3874 2.224549 CGTTTGGCCGTGTATTTCTTGA 59.775 45.455 0.00 0.00 0.00 3.02
2102 3875 2.224549 TCGTTTGGCCGTGTATTTCTTG 59.775 45.455 0.00 0.00 0.00 3.02
2108 3881 2.676632 TGTATCGTTTGGCCGTGTAT 57.323 45.000 0.00 0.00 0.00 2.29
2167 3940 3.623703 TGCATTCTATGTGTGCAGGATT 58.376 40.909 0.00 0.00 43.30 3.01
2172 3945 0.447406 GCGTGCATTCTATGTGTGCA 59.553 50.000 0.00 0.00 45.69 4.57
2180 3953 1.407618 ACCATAGTCGCGTGCATTCTA 59.592 47.619 5.77 1.56 0.00 2.10
2185 3958 1.140161 GGTACCATAGTCGCGTGCA 59.860 57.895 7.15 0.00 0.00 4.57
2199 3972 0.802494 CCGGTGCTCATTGTTGGTAC 59.198 55.000 0.00 0.00 0.00 3.34
2209 3982 1.180456 TTTAGTCCGTCCGGTGCTCA 61.180 55.000 0.00 0.00 36.47 4.26
2220 3993 1.012486 GCGTGAGGGTGTTTAGTCCG 61.012 60.000 0.00 0.00 0.00 4.79
2222 3995 3.119245 TCATAGCGTGAGGGTGTTTAGTC 60.119 47.826 0.00 0.00 31.80 2.59
2246 4020 5.448496 CGTGGAGCTTAGATATGCTAGCTAG 60.448 48.000 16.84 16.84 39.91 3.42
2247 4021 4.396478 CGTGGAGCTTAGATATGCTAGCTA 59.604 45.833 17.23 6.33 39.91 3.32
2248 4022 3.192422 CGTGGAGCTTAGATATGCTAGCT 59.808 47.826 17.23 4.07 39.91 3.32
2249 4023 3.191581 TCGTGGAGCTTAGATATGCTAGC 59.808 47.826 8.10 8.10 39.91 3.42
2256 4030 2.479049 GCGTTGTCGTGGAGCTTAGATA 60.479 50.000 0.00 0.00 39.49 1.98
2258 4032 0.388134 GCGTTGTCGTGGAGCTTAGA 60.388 55.000 0.00 0.00 39.49 2.10
2280 4054 4.627467 GCTTTGCGATGTTCTCTCTCTTAA 59.373 41.667 0.00 0.00 0.00 1.85
2281 4055 4.177026 GCTTTGCGATGTTCTCTCTCTTA 58.823 43.478 0.00 0.00 0.00 2.10
2468 4242 3.753070 GACATCGTCGCGTCCCTCC 62.753 68.421 5.77 0.00 0.00 4.30
2473 4247 1.007336 AGGTTTGACATCGTCGCGTC 61.007 55.000 5.77 0.00 34.95 5.19
2488 4273 1.306141 TGATCCGGAGCTGGAGGTT 60.306 57.895 22.18 0.00 42.45 3.50
2490 4275 2.506061 CCTGATCCGGAGCTGGAGG 61.506 68.421 34.78 22.84 42.45 4.30
2497 4282 3.917760 GGGCGTCCTGATCCGGAG 61.918 72.222 11.34 0.00 32.70 4.63
2520 4307 2.482333 CGGACGTGCCCTCTCTAGG 61.482 68.421 0.00 0.00 43.25 3.02
2521 4308 1.440938 CTCGGACGTGCCCTCTCTAG 61.441 65.000 0.00 0.00 0.00 2.43
2522 4309 1.451567 CTCGGACGTGCCCTCTCTA 60.452 63.158 0.00 0.00 0.00 2.43
2547 4334 0.447801 GCAATAGGAGGTGTTGCGTG 59.552 55.000 0.00 0.00 42.58 5.34
2548 4335 2.854522 GCAATAGGAGGTGTTGCGT 58.145 52.632 0.00 0.00 42.58 5.24
2562 4349 0.409092 TCCTGGATTGTGTGGGCAAT 59.591 50.000 0.00 0.00 41.28 3.56
2601 4388 9.221933 GCTCTTAGCTAGTTACTCATACTATGA 57.778 37.037 0.00 0.00 38.45 2.15
2602 4389 9.004717 TGCTCTTAGCTAGTTACTCATACTATG 57.995 37.037 0.03 0.00 42.97 2.23
2603 4390 9.747898 ATGCTCTTAGCTAGTTACTCATACTAT 57.252 33.333 0.03 0.00 42.97 2.12
2604 4391 9.221933 GATGCTCTTAGCTAGTTACTCATACTA 57.778 37.037 0.03 0.00 42.97 1.82
2605 4392 7.942341 AGATGCTCTTAGCTAGTTACTCATACT 59.058 37.037 0.03 0.00 42.97 2.12
2606 4393 8.106247 AGATGCTCTTAGCTAGTTACTCATAC 57.894 38.462 0.03 0.00 42.97 2.39
2607 4394 7.392113 GGAGATGCTCTTAGCTAGTTACTCATA 59.608 40.741 0.03 0.00 42.97 2.15
2608 4395 6.208599 GGAGATGCTCTTAGCTAGTTACTCAT 59.791 42.308 0.03 0.00 42.97 2.90
2609 4396 5.533154 GGAGATGCTCTTAGCTAGTTACTCA 59.467 44.000 0.03 0.00 42.97 3.41
2610 4397 5.533154 TGGAGATGCTCTTAGCTAGTTACTC 59.467 44.000 0.03 0.00 42.97 2.59
2611 4398 5.450453 TGGAGATGCTCTTAGCTAGTTACT 58.550 41.667 0.03 0.00 42.97 2.24
2612 4399 5.776173 TGGAGATGCTCTTAGCTAGTTAC 57.224 43.478 0.03 0.00 42.97 2.50
2613 4400 5.656859 TGTTGGAGATGCTCTTAGCTAGTTA 59.343 40.000 0.03 0.00 42.97 2.24
2614 4401 4.467795 TGTTGGAGATGCTCTTAGCTAGTT 59.532 41.667 0.03 0.00 42.97 2.24
2615 4402 4.026744 TGTTGGAGATGCTCTTAGCTAGT 58.973 43.478 0.03 0.00 42.97 2.57
2616 4403 4.662468 TGTTGGAGATGCTCTTAGCTAG 57.338 45.455 0.03 0.00 42.97 3.42
2617 4404 5.598417 TGTATGTTGGAGATGCTCTTAGCTA 59.402 40.000 0.03 0.00 42.97 3.32
2618 4405 4.406972 TGTATGTTGGAGATGCTCTTAGCT 59.593 41.667 0.00 0.00 42.97 3.32
2619 4406 4.509600 GTGTATGTTGGAGATGCTCTTAGC 59.490 45.833 0.00 0.00 42.82 3.09
2620 4407 5.521735 GTGTGTATGTTGGAGATGCTCTTAG 59.478 44.000 0.00 0.00 0.00 2.18
2621 4408 5.419542 GTGTGTATGTTGGAGATGCTCTTA 58.580 41.667 0.00 0.00 0.00 2.10
2622 4409 4.256920 GTGTGTATGTTGGAGATGCTCTT 58.743 43.478 0.00 0.00 0.00 2.85
2623 4410 3.677148 CGTGTGTATGTTGGAGATGCTCT 60.677 47.826 0.00 0.00 0.00 4.09
2624 4411 2.604914 CGTGTGTATGTTGGAGATGCTC 59.395 50.000 0.00 0.00 0.00 4.26
2625 4412 2.621338 CGTGTGTATGTTGGAGATGCT 58.379 47.619 0.00 0.00 0.00 3.79
2626 4413 1.665679 CCGTGTGTATGTTGGAGATGC 59.334 52.381 0.00 0.00 0.00 3.91
2627 4414 2.930040 GACCGTGTGTATGTTGGAGATG 59.070 50.000 0.00 0.00 0.00 2.90
2628 4415 2.416836 CGACCGTGTGTATGTTGGAGAT 60.417 50.000 0.00 0.00 0.00 2.75
2629 4416 1.068125 CGACCGTGTGTATGTTGGAGA 60.068 52.381 0.00 0.00 0.00 3.71
2630 4417 1.346365 CGACCGTGTGTATGTTGGAG 58.654 55.000 0.00 0.00 0.00 3.86
2631 4418 0.668096 GCGACCGTGTGTATGTTGGA 60.668 55.000 0.00 0.00 0.00 3.53
2632 4419 1.785321 GCGACCGTGTGTATGTTGG 59.215 57.895 0.00 0.00 0.00 3.77
2633 4420 1.414514 CGCGACCGTGTGTATGTTG 59.585 57.895 0.00 0.00 0.00 3.33
2634 4421 2.377310 GCGCGACCGTGTGTATGTT 61.377 57.895 12.10 0.00 36.67 2.71
2635 4422 1.925415 TAGCGCGACCGTGTGTATGT 61.925 55.000 12.10 0.00 36.67 2.29
2636 4423 0.799152 TTAGCGCGACCGTGTGTATG 60.799 55.000 12.10 0.00 36.67 2.39
2637 4424 0.101759 ATTAGCGCGACCGTGTGTAT 59.898 50.000 12.10 0.00 36.67 2.29
2638 4425 0.109179 AATTAGCGCGACCGTGTGTA 60.109 50.000 12.10 0.00 36.67 2.90
2639 4426 0.947180 AAATTAGCGCGACCGTGTGT 60.947 50.000 12.10 0.00 36.67 3.72
2640 4427 0.165079 AAAATTAGCGCGACCGTGTG 59.835 50.000 12.10 0.00 36.67 3.82
2641 4428 0.869730 AAAAATTAGCGCGACCGTGT 59.130 45.000 12.10 0.00 36.67 4.49
2642 4429 3.668641 AAAAATTAGCGCGACCGTG 57.331 47.368 12.10 0.00 36.67 4.94
2658 4445 7.475771 AAACGCAATTTCAGCATTCTAAAAA 57.524 28.000 0.00 0.00 0.00 1.94
2659 4446 7.475771 AAAACGCAATTTCAGCATTCTAAAA 57.524 28.000 0.00 0.00 0.00 1.52
2660 4447 6.129221 CGAAAACGCAATTTCAGCATTCTAAA 60.129 34.615 10.69 0.00 38.87 1.85
2661 4448 5.341993 CGAAAACGCAATTTCAGCATTCTAA 59.658 36.000 10.69 0.00 38.87 2.10
2662 4449 4.851014 CGAAAACGCAATTTCAGCATTCTA 59.149 37.500 10.69 0.00 38.87 2.10
2663 4450 3.670055 CGAAAACGCAATTTCAGCATTCT 59.330 39.130 10.69 0.00 38.87 2.40
2664 4451 3.718898 GCGAAAACGCAATTTCAGCATTC 60.719 43.478 9.66 0.00 38.87 2.67
2665 4452 2.155539 GCGAAAACGCAATTTCAGCATT 59.844 40.909 9.66 0.00 38.87 3.56
2666 4453 1.720852 GCGAAAACGCAATTTCAGCAT 59.279 42.857 9.66 0.00 38.87 3.79
2667 4454 1.127701 GCGAAAACGCAATTTCAGCA 58.872 45.000 9.66 0.00 38.87 4.41
2668 4455 0.089516 CGCGAAAACGCAATTTCAGC 59.910 50.000 0.00 12.07 38.87 4.26
2679 4466 4.676586 CACCCCGTGCGCGAAAAC 62.677 66.667 23.45 3.20 41.33 2.43
2698 4485 3.863114 AAAATGCCCCCACCCCACC 62.863 63.158 0.00 0.00 0.00 4.61
2699 4486 2.203922 AAAATGCCCCCACCCCAC 60.204 61.111 0.00 0.00 0.00 4.61
2700 4487 2.203907 CAAAATGCCCCCACCCCA 60.204 61.111 0.00 0.00 0.00 4.96
2701 4488 3.716195 GCAAAATGCCCCCACCCC 61.716 66.667 0.00 0.00 37.42 4.95
2702 4489 1.778017 AAAGCAAAATGCCCCCACCC 61.778 55.000 0.00 0.00 46.52 4.61
2703 4490 0.606130 CAAAGCAAAATGCCCCCACC 60.606 55.000 0.00 0.00 46.52 4.61
2704 4491 0.606130 CCAAAGCAAAATGCCCCCAC 60.606 55.000 0.00 0.00 46.52 4.61
2705 4492 1.759881 CCAAAGCAAAATGCCCCCA 59.240 52.632 0.00 0.00 46.52 4.96
2706 4493 1.675310 GCCAAAGCAAAATGCCCCC 60.675 57.895 0.00 0.00 46.52 5.40
2707 4494 3.985877 GCCAAAGCAAAATGCCCC 58.014 55.556 0.00 0.00 46.52 5.80
2717 4504 1.299541 TATAGCGCTTCTGCCAAAGC 58.700 50.000 18.68 9.50 46.54 3.51
2718 4505 4.285292 CAAATATAGCGCTTCTGCCAAAG 58.715 43.478 18.68 0.00 35.36 2.77
2719 4506 3.066621 CCAAATATAGCGCTTCTGCCAAA 59.933 43.478 18.68 0.00 35.36 3.28
2720 4507 2.618241 CCAAATATAGCGCTTCTGCCAA 59.382 45.455 18.68 0.00 35.36 4.52
2721 4508 2.221169 CCAAATATAGCGCTTCTGCCA 58.779 47.619 18.68 0.00 35.36 4.92
2722 4509 2.977405 CCAAATATAGCGCTTCTGCC 57.023 50.000 18.68 0.00 35.36 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.