Multiple sequence alignment - TraesCS5D01G538700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G538700 chr5D 100.000 3550 0 0 1 3550 550640047 550636498 0.000000e+00 6556.0
1 TraesCS5D01G538700 chr5D 80.788 406 76 2 2229 2633 550611489 550611085 2.060000e-82 316.0
2 TraesCS5D01G538700 chr5D 78.983 295 32 16 1153 1421 550580088 550579798 1.310000e-39 174.0
3 TraesCS5D01G538700 chr5D 89.474 76 8 0 1268 1343 550512086 550512011 2.920000e-16 97.1
4 TraesCS5D01G538700 chr5D 86.747 83 4 4 1268 1343 501116504 501116586 6.310000e-13 86.1
5 TraesCS5D01G538700 chr5B 90.073 826 67 2 1823 2634 703228080 703227256 0.000000e+00 1057.0
6 TraesCS5D01G538700 chr5B 92.182 550 39 3 2173 2720 703196561 703196014 0.000000e+00 774.0
7 TraesCS5D01G538700 chr5B 89.840 561 53 3 2741 3298 703196042 703195483 0.000000e+00 717.0
8 TraesCS5D01G538700 chr5B 81.565 754 122 13 1836 2584 703097486 703096745 1.090000e-169 606.0
9 TraesCS5D01G538700 chr5B 81.684 677 54 23 1002 1637 703231795 703231148 1.900000e-137 499.0
10 TraesCS5D01G538700 chr5B 77.233 918 165 28 1675 2563 703169314 703168412 6.840000e-137 497.0
11 TraesCS5D01G538700 chr5B 77.184 824 160 18 1761 2563 703141830 703141014 4.180000e-124 455.0
12 TraesCS5D01G538700 chr5B 81.527 406 71 4 2186 2590 703172921 703172519 7.350000e-87 331.0
13 TraesCS5D01G538700 chr5B 92.021 188 9 2 3363 3550 703195255 703195074 3.520000e-65 259.0
14 TraesCS5D01G538700 chr5B 78.462 390 79 3 1752 2139 703173405 703173019 2.120000e-62 250.0
15 TraesCS5D01G538700 chr5B 86.275 204 13 9 629 820 703207312 703207112 1.290000e-49 207.0
16 TraesCS5D01G538700 chr5B 83.981 206 16 7 629 820 703235059 703234857 7.830000e-42 182.0
17 TraesCS5D01G538700 chr5B 86.585 164 9 3 1 162 703235261 703235109 6.090000e-38 169.0
18 TraesCS5D01G538700 chr5B 83.929 168 11 9 1 165 703257868 703257714 2.860000e-31 147.0
19 TraesCS5D01G538700 chr5B 74.894 235 47 7 2496 2724 703227245 703227017 2.920000e-16 97.1
20 TraesCS5D01G538700 chr5B 87.179 78 10 0 1268 1345 702943982 702943905 4.880000e-14 89.8
21 TraesCS5D01G538700 chr4A 88.654 758 65 12 2806 3550 616986626 616987375 0.000000e+00 904.0
22 TraesCS5D01G538700 chr4A 85.294 408 17 16 636 1031 616985137 616985513 7.190000e-102 381.0
23 TraesCS5D01G538700 chr4A 85.559 367 30 13 1543 1894 616986066 616986424 2.600000e-96 363.0
24 TraesCS5D01G538700 chr4A 79.847 392 74 3 1750 2139 617001594 617001982 7.500000e-72 281.0
25 TraesCS5D01G538700 chr4A 91.579 190 10 4 2633 2817 616986421 616986609 1.260000e-64 257.0
26 TraesCS5D01G538700 chr4A 92.727 165 12 0 1 165 616984975 616985139 4.580000e-59 239.0
27 TraesCS5D01G538700 chr4A 80.586 273 28 14 1153 1407 617042410 617042675 1.680000e-43 187.0
28 TraesCS5D01G538700 chr4A 97.436 78 2 0 1029 1106 616985934 616986011 2.220000e-27 134.0
29 TraesCS5D01G538700 chr4A 89.474 76 8 0 1268 1343 617094653 617094728 2.920000e-16 97.1
30 TraesCS5D01G538700 chr4A 72.368 304 79 5 2800 3100 154922301 154922602 1.360000e-14 91.6
31 TraesCS5D01G538700 chr6B 96.296 54 2 0 574 627 280519803 280519750 4.880000e-14 89.8
32 TraesCS5D01G538700 chr6B 92.857 56 4 0 572 627 675231468 675231413 8.170000e-12 82.4
33 TraesCS5D01G538700 chr4B 96.226 53 2 0 575 627 495322446 495322498 1.760000e-13 87.9
34 TraesCS5D01G538700 chr6D 96.154 52 2 0 584 635 130077153 130077102 6.310000e-13 86.1
35 TraesCS5D01G538700 chr6A 91.803 61 4 1 568 628 150232051 150232110 2.270000e-12 84.2
36 TraesCS5D01G538700 chrUn 91.667 60 2 3 582 638 252684456 252684515 2.940000e-11 80.5
37 TraesCS5D01G538700 chr7D 90.164 61 4 2 574 633 140290163 140290222 1.060000e-10 78.7
38 TraesCS5D01G538700 chr4D 88.889 63 5 1 565 627 265262232 265262172 3.800000e-10 76.8
39 TraesCS5D01G538700 chr4D 85.714 70 9 1 2806 2874 319089233 319089164 4.920000e-09 73.1
40 TraesCS5D01G538700 chr3D 89.062 64 4 2 566 627 471939204 471939266 3.800000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G538700 chr5D 550636498 550640047 3549 True 6556.000000 6556 100.000000 1 3550 1 chr5D.!!$R4 3549
1 TraesCS5D01G538700 chr5B 703096745 703097486 741 True 606.000000 606 81.565000 1836 2584 1 chr5B.!!$R2 748
2 TraesCS5D01G538700 chr5B 703195074 703196561 1487 True 583.333333 774 91.347667 2173 3550 3 chr5B.!!$R7 1377
3 TraesCS5D01G538700 chr5B 703141014 703141830 816 True 455.000000 455 77.184000 1761 2563 1 chr5B.!!$R3 802
4 TraesCS5D01G538700 chr5B 703227017 703235261 8244 True 400.820000 1057 83.443400 1 2724 5 chr5B.!!$R8 2723
5 TraesCS5D01G538700 chr5B 703168412 703173405 4993 True 359.333333 497 79.074000 1675 2590 3 chr5B.!!$R6 915
6 TraesCS5D01G538700 chr4A 616984975 616987375 2400 False 379.666667 904 90.208167 1 3550 6 chr4A.!!$F5 3549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 648 0.033601 TGTTTTGGGTGTGTGCCTCT 60.034 50.0 0.0 0.0 0.0 3.69 F
1370 4742 0.106708 CCGTCCCTACCACATCCATG 59.893 60.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 4838 0.107643 TGGTGGTGCGATTGAAGTGA 59.892 50.0 0.00 0.0 0.0 3.41 R
3347 9844 0.112412 GGAGTTGGGACCATGGTTGT 59.888 55.0 20.85 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 190 3.329889 TGGGCGCTCTCCATGGTT 61.330 61.111 9.62 0.00 0.00 3.67
190 191 2.044946 GGGCGCTCTCCATGGTTT 60.045 61.111 12.58 0.00 0.00 3.27
191 192 1.223487 GGGCGCTCTCCATGGTTTA 59.777 57.895 12.58 0.00 0.00 2.01
192 193 0.815615 GGGCGCTCTCCATGGTTTAG 60.816 60.000 12.58 8.85 0.00 1.85
193 194 0.107654 GGCGCTCTCCATGGTTTAGT 60.108 55.000 12.58 0.00 0.00 2.24
194 195 1.679032 GGCGCTCTCCATGGTTTAGTT 60.679 52.381 12.58 0.00 0.00 2.24
195 196 2.084546 GCGCTCTCCATGGTTTAGTTT 58.915 47.619 12.58 0.00 0.00 2.66
196 197 2.159517 GCGCTCTCCATGGTTTAGTTTG 60.160 50.000 12.58 4.11 0.00 2.93
197 198 3.074412 CGCTCTCCATGGTTTAGTTTGT 58.926 45.455 12.58 0.00 0.00 2.83
198 199 4.250464 CGCTCTCCATGGTTTAGTTTGTA 58.750 43.478 12.58 0.00 0.00 2.41
199 200 4.693566 CGCTCTCCATGGTTTAGTTTGTAA 59.306 41.667 12.58 0.00 0.00 2.41
200 201 5.390567 CGCTCTCCATGGTTTAGTTTGTAAC 60.391 44.000 12.58 0.00 0.00 2.50
201 202 5.472137 GCTCTCCATGGTTTAGTTTGTAACA 59.528 40.000 12.58 0.00 0.00 2.41
202 203 6.151144 GCTCTCCATGGTTTAGTTTGTAACAT 59.849 38.462 12.58 0.00 0.00 2.71
204 205 6.432783 TCTCCATGGTTTAGTTTGTAACATGG 59.567 38.462 12.58 12.31 35.99 3.66
205 206 5.047660 TCCATGGTTTAGTTTGTAACATGGC 60.048 40.000 12.58 0.00 35.39 4.40
206 207 4.857509 TGGTTTAGTTTGTAACATGGCC 57.142 40.909 0.00 0.00 0.00 5.36
207 208 3.253677 TGGTTTAGTTTGTAACATGGCCG 59.746 43.478 0.00 0.00 0.00 6.13
208 209 3.253921 GGTTTAGTTTGTAACATGGCCGT 59.746 43.478 0.00 0.00 0.00 5.68
209 210 4.223659 GTTTAGTTTGTAACATGGCCGTG 58.776 43.478 23.83 23.83 0.00 4.94
213 214 0.036164 TTGTAACATGGCCGTGCTCT 59.964 50.000 25.30 12.09 0.00 4.09
215 216 1.745115 TAACATGGCCGTGCTCTGC 60.745 57.895 25.30 0.00 0.00 4.26
216 217 2.184020 TAACATGGCCGTGCTCTGCT 62.184 55.000 25.30 0.65 0.00 4.24
217 218 3.200593 CATGGCCGTGCTCTGCTC 61.201 66.667 13.11 0.00 0.00 4.26
218 219 3.397439 ATGGCCGTGCTCTGCTCT 61.397 61.111 0.00 0.00 0.00 4.09
219 220 3.677284 ATGGCCGTGCTCTGCTCTG 62.677 63.158 0.00 0.00 0.00 3.35
221 222 4.756458 GCCGTGCTCTGCTCTGCT 62.756 66.667 0.00 0.00 31.62 4.24
223 224 2.260743 CGTGCTCTGCTCTGCTGA 59.739 61.111 0.00 0.00 35.38 4.26
225 226 1.146957 CGTGCTCTGCTCTGCTGATC 61.147 60.000 0.00 0.00 36.06 2.92
226 227 0.108281 GTGCTCTGCTCTGCTGATCA 60.108 55.000 0.00 0.00 36.06 2.92
227 228 0.611714 TGCTCTGCTCTGCTGATCAA 59.388 50.000 0.00 0.00 36.06 2.57
228 229 1.292061 GCTCTGCTCTGCTGATCAAG 58.708 55.000 0.00 0.00 36.06 3.02
229 230 1.405797 GCTCTGCTCTGCTGATCAAGT 60.406 52.381 0.00 0.00 36.06 3.16
232 233 0.323957 TGCTCTGCTGATCAAGTGCT 59.676 50.000 17.71 0.00 0.00 4.40
233 234 1.271217 TGCTCTGCTGATCAAGTGCTT 60.271 47.619 17.71 0.00 0.00 3.91
235 236 2.424557 CTCTGCTGATCAAGTGCTTGT 58.575 47.619 11.17 0.35 41.16 3.16
236 237 2.148768 TCTGCTGATCAAGTGCTTGTG 58.851 47.619 11.17 3.32 41.16 3.33
242 243 2.223548 TGATCAAGTGCTTGTGTGCAAC 60.224 45.455 11.17 0.00 45.12 4.17
243 244 1.172175 TCAAGTGCTTGTGTGCAACA 58.828 45.000 11.17 0.00 45.12 3.33
254 255 2.687700 TGTGCAACATTGGTTTGCTT 57.312 40.000 11.77 0.00 45.67 3.91
255 256 3.808466 TGTGCAACATTGGTTTGCTTA 57.192 38.095 11.77 1.09 45.67 3.09
256 257 4.128925 TGTGCAACATTGGTTTGCTTAA 57.871 36.364 11.77 0.00 45.67 1.85
257 258 4.701765 TGTGCAACATTGGTTTGCTTAAT 58.298 34.783 11.77 0.00 45.67 1.40
259 260 4.749099 GTGCAACATTGGTTTGCTTAATCA 59.251 37.500 11.77 0.00 34.21 2.57
260 261 4.749099 TGCAACATTGGTTTGCTTAATCAC 59.251 37.500 11.77 0.00 34.21 3.06
262 263 5.409214 GCAACATTGGTTTGCTTAATCACAT 59.591 36.000 5.08 0.00 34.21 3.21
263 264 6.073112 GCAACATTGGTTTGCTTAATCACATT 60.073 34.615 5.08 0.00 34.21 2.71
266 267 8.086851 ACATTGGTTTGCTTAATCACATTTTC 57.913 30.769 0.00 0.00 0.00 2.29
269 270 6.222389 TGGTTTGCTTAATCACATTTTCTGG 58.778 36.000 0.00 0.00 0.00 3.86
271 272 5.465532 TTGCTTAATCACATTTTCTGGCA 57.534 34.783 0.00 0.00 0.00 4.92
272 273 5.465532 TGCTTAATCACATTTTCTGGCAA 57.534 34.783 0.00 0.00 0.00 4.52
273 274 5.851720 TGCTTAATCACATTTTCTGGCAAA 58.148 33.333 0.00 0.00 0.00 3.68
276 277 6.128742 GCTTAATCACATTTTCTGGCAAACTG 60.129 38.462 0.00 0.00 0.00 3.16
277 278 5.534207 AATCACATTTTCTGGCAAACTGA 57.466 34.783 0.00 0.00 0.00 3.41
278 279 4.998671 TCACATTTTCTGGCAAACTGAA 57.001 36.364 0.00 0.00 35.55 3.02
279 280 5.336150 TCACATTTTCTGGCAAACTGAAA 57.664 34.783 0.00 0.00 42.81 2.69
281 282 5.105392 TCACATTTTCTGGCAAACTGAAACT 60.105 36.000 0.00 0.00 43.75 2.66
282 283 5.005971 CACATTTTCTGGCAAACTGAAACTG 59.994 40.000 12.59 12.59 45.09 3.16
283 284 3.799281 TTTCTGGCAAACTGAAACTGG 57.201 42.857 0.00 0.00 40.64 4.00
285 286 0.746063 CTGGCAAACTGAAACTGGCA 59.254 50.000 0.00 0.00 42.65 4.92
288 289 2.961741 TGGCAAACTGAAACTGGCAATA 59.038 40.909 0.00 0.00 42.02 1.90
289 290 3.243704 TGGCAAACTGAAACTGGCAATAC 60.244 43.478 0.00 0.00 42.02 1.89
290 291 3.005791 GGCAAACTGAAACTGGCAATACT 59.994 43.478 0.00 0.00 35.79 2.12
294 295 6.373779 CAAACTGAAACTGGCAATACTGTAG 58.626 40.000 0.00 0.00 0.00 2.74
295 296 5.483685 ACTGAAACTGGCAATACTGTAGA 57.516 39.130 0.00 0.00 0.00 2.59
296 297 5.865085 ACTGAAACTGGCAATACTGTAGAA 58.135 37.500 0.00 0.00 0.00 2.10
297 298 6.296026 ACTGAAACTGGCAATACTGTAGAAA 58.704 36.000 0.00 0.00 0.00 2.52
298 299 6.428159 ACTGAAACTGGCAATACTGTAGAAAG 59.572 38.462 0.00 0.00 0.00 2.62
300 301 6.650807 TGAAACTGGCAATACTGTAGAAAGAG 59.349 38.462 0.00 0.00 0.00 2.85
301 302 6.360370 AACTGGCAATACTGTAGAAAGAGA 57.640 37.500 0.00 0.00 0.00 3.10
303 304 5.717178 ACTGGCAATACTGTAGAAAGAGAGA 59.283 40.000 0.00 0.00 0.00 3.10
305 306 5.952347 TGGCAATACTGTAGAAAGAGAGAGA 59.048 40.000 0.00 0.00 0.00 3.10
306 307 6.609212 TGGCAATACTGTAGAAAGAGAGAGAT 59.391 38.462 0.00 0.00 0.00 2.75
307 308 6.922957 GGCAATACTGTAGAAAGAGAGAGATG 59.077 42.308 0.00 0.00 0.00 2.90
309 310 7.201866 GCAATACTGTAGAAAGAGAGAGATGGA 60.202 40.741 0.00 0.00 0.00 3.41
310 311 8.352201 CAATACTGTAGAAAGAGAGAGATGGAG 58.648 40.741 0.00 0.00 0.00 3.86
312 313 6.672593 ACTGTAGAAAGAGAGAGATGGAGAT 58.327 40.000 0.00 0.00 0.00 2.75
313 314 7.811282 ACTGTAGAAAGAGAGAGATGGAGATA 58.189 38.462 0.00 0.00 0.00 1.98
314 315 7.719633 ACTGTAGAAAGAGAGAGATGGAGATAC 59.280 40.741 0.00 0.00 0.00 2.24
315 316 7.578203 TGTAGAAAGAGAGAGATGGAGATACA 58.422 38.462 0.00 0.00 0.00 2.29
316 317 7.719193 TGTAGAAAGAGAGAGATGGAGATACAG 59.281 40.741 0.00 0.00 0.00 2.74
317 318 6.672593 AGAAAGAGAGAGATGGAGATACAGT 58.327 40.000 0.00 0.00 0.00 3.55
318 319 7.811282 AGAAAGAGAGAGATGGAGATACAGTA 58.189 38.462 0.00 0.00 0.00 2.74
322 323 5.547465 AGAGAGATGGAGATACAGTAGTCG 58.453 45.833 0.00 0.00 0.00 4.18
323 324 5.071250 AGAGAGATGGAGATACAGTAGTCGT 59.929 44.000 0.00 0.00 0.00 4.34
324 325 5.302360 AGAGATGGAGATACAGTAGTCGTC 58.698 45.833 0.00 0.00 0.00 4.20
325 326 4.059511 AGATGGAGATACAGTAGTCGTCG 58.940 47.826 0.00 0.00 0.00 5.12
327 328 1.263752 GGAGATACAGTAGTCGTCGGC 59.736 57.143 0.00 0.00 0.00 5.54
329 330 0.656786 GATACAGTAGTCGTCGGCGC 60.657 60.000 3.52 0.00 38.14 6.53
331 332 1.974249 TACAGTAGTCGTCGGCGCTG 61.974 60.000 10.86 10.86 38.14 5.18
333 334 2.177531 GTAGTCGTCGGCGCTGAA 59.822 61.111 22.89 2.82 38.14 3.02
334 335 1.443194 GTAGTCGTCGGCGCTGAAA 60.443 57.895 22.89 9.69 38.14 2.69
335 336 1.154093 TAGTCGTCGGCGCTGAAAG 60.154 57.895 22.89 18.05 38.14 2.62
336 337 2.537792 TAGTCGTCGGCGCTGAAAGG 62.538 60.000 22.89 13.48 38.14 3.11
348 349 3.064900 GCTGAAAGGGAATCTGTCTGT 57.935 47.619 0.00 0.00 32.93 3.41
349 350 3.006247 GCTGAAAGGGAATCTGTCTGTC 58.994 50.000 0.00 0.00 32.93 3.51
350 351 3.257393 CTGAAAGGGAATCTGTCTGTCG 58.743 50.000 0.00 0.00 30.91 4.35
351 352 2.028112 TGAAAGGGAATCTGTCTGTCGG 60.028 50.000 0.00 0.00 30.91 4.79
352 353 1.645710 AAGGGAATCTGTCTGTCGGT 58.354 50.000 0.00 0.00 0.00 4.69
353 354 1.187087 AGGGAATCTGTCTGTCGGTC 58.813 55.000 0.00 0.00 0.00 4.79
354 355 1.187087 GGGAATCTGTCTGTCGGTCT 58.813 55.000 0.00 0.00 0.00 3.85
357 358 2.600731 GAATCTGTCTGTCGGTCTGTG 58.399 52.381 0.00 0.00 0.00 3.66
359 360 0.668535 TCTGTCTGTCGGTCTGTGTG 59.331 55.000 0.00 0.00 0.00 3.82
360 361 0.668535 CTGTCTGTCGGTCTGTGTGA 59.331 55.000 0.00 0.00 0.00 3.58
361 362 1.270826 CTGTCTGTCGGTCTGTGTGAT 59.729 52.381 0.00 0.00 0.00 3.06
362 363 1.000274 TGTCTGTCGGTCTGTGTGATG 60.000 52.381 0.00 0.00 0.00 3.07
363 364 0.603065 TCTGTCGGTCTGTGTGATGG 59.397 55.000 0.00 0.00 0.00 3.51
364 365 0.603065 CTGTCGGTCTGTGTGATGGA 59.397 55.000 0.00 0.00 0.00 3.41
366 367 1.066929 TGTCGGTCTGTGTGATGGATG 60.067 52.381 0.00 0.00 0.00 3.51
369 370 1.139654 CGGTCTGTGTGATGGATGGAT 59.860 52.381 0.00 0.00 0.00 3.41
370 371 2.569059 GGTCTGTGTGATGGATGGATG 58.431 52.381 0.00 0.00 0.00 3.51
371 372 2.569059 GTCTGTGTGATGGATGGATGG 58.431 52.381 0.00 0.00 0.00 3.51
373 374 3.050835 TCTGTGTGATGGATGGATGGAT 58.949 45.455 0.00 0.00 0.00 3.41
374 375 3.146847 CTGTGTGATGGATGGATGGATG 58.853 50.000 0.00 0.00 0.00 3.51
375 376 2.158579 TGTGTGATGGATGGATGGATGG 60.159 50.000 0.00 0.00 0.00 3.51
378 379 1.426215 TGATGGATGGATGGATGGTGG 59.574 52.381 0.00 0.00 0.00 4.61
379 380 1.426598 GATGGATGGATGGATGGTGGT 59.573 52.381 0.00 0.00 0.00 4.16
380 381 2.204720 TGGATGGATGGATGGTGGTA 57.795 50.000 0.00 0.00 0.00 3.25
381 382 2.057140 TGGATGGATGGATGGTGGTAG 58.943 52.381 0.00 0.00 0.00 3.18
382 383 1.271597 GGATGGATGGATGGTGGTAGC 60.272 57.143 0.00 0.00 0.00 3.58
383 384 1.701847 GATGGATGGATGGTGGTAGCT 59.298 52.381 0.00 0.00 0.00 3.32
385 386 0.536006 GGATGGATGGTGGTAGCTGC 60.536 60.000 0.00 0.00 0.00 5.25
387 388 0.107017 ATGGATGGTGGTAGCTGCAC 60.107 55.000 3.61 0.02 0.00 4.57
388 389 1.815421 GGATGGTGGTAGCTGCACG 60.815 63.158 3.61 0.00 0.00 5.34
389 390 1.218047 GATGGTGGTAGCTGCACGA 59.782 57.895 3.61 0.00 0.00 4.35
391 392 2.125512 GGTGGTAGCTGCACGAGG 60.126 66.667 3.61 0.00 0.00 4.63
392 393 2.125512 GTGGTAGCTGCACGAGGG 60.126 66.667 3.61 0.00 0.00 4.30
393 394 2.283604 TGGTAGCTGCACGAGGGA 60.284 61.111 3.61 0.00 0.00 4.20
394 395 1.911269 TGGTAGCTGCACGAGGGAA 60.911 57.895 3.61 0.00 0.00 3.97
397 398 1.080093 TAGCTGCACGAGGGAAACG 60.080 57.895 1.02 0.00 0.00 3.60
398 399 2.501223 TAGCTGCACGAGGGAAACGG 62.501 60.000 1.02 0.00 34.93 4.44
399 400 2.742372 CTGCACGAGGGAAACGGG 60.742 66.667 0.00 0.00 37.22 5.28
400 401 4.323477 TGCACGAGGGAAACGGGG 62.323 66.667 0.00 0.00 34.56 5.73
402 403 2.264794 CACGAGGGAAACGGGGAG 59.735 66.667 0.00 0.00 34.93 4.30
403 404 3.703127 ACGAGGGAAACGGGGAGC 61.703 66.667 0.00 0.00 34.93 4.70
408 409 2.203029 GGAAACGGGGAGCGATCC 60.203 66.667 12.38 12.38 0.00 3.36
420 421 2.427575 CGATCCGTCGCCATCTCG 60.428 66.667 0.00 0.00 41.49 4.04
421 422 2.731348 GATCCGTCGCCATCTCGC 60.731 66.667 0.00 0.00 0.00 5.03
430 431 3.197790 CCATCTCGCGGCTGTTGG 61.198 66.667 6.13 8.20 0.00 3.77
431 432 3.869272 CATCTCGCGGCTGTTGGC 61.869 66.667 6.13 0.00 40.90 4.52
432 433 4.087892 ATCTCGCGGCTGTTGGCT 62.088 61.111 6.13 0.00 41.46 4.75
433 434 4.742201 TCTCGCGGCTGTTGGCTC 62.742 66.667 6.13 0.00 41.46 4.70
440 441 1.009829 CGGCTGTTGGCTCATAACTC 58.990 55.000 0.00 0.00 41.46 3.01
441 442 1.406069 CGGCTGTTGGCTCATAACTCT 60.406 52.381 0.00 0.00 41.46 3.24
442 443 2.012673 GGCTGTTGGCTCATAACTCTG 58.987 52.381 0.00 0.00 41.46 3.35
443 444 1.399791 GCTGTTGGCTCATAACTCTGC 59.600 52.381 0.00 0.00 38.06 4.26
444 445 2.938756 GCTGTTGGCTCATAACTCTGCT 60.939 50.000 0.00 0.00 38.06 4.24
446 447 2.284190 GTTGGCTCATAACTCTGCTCC 58.716 52.381 0.00 0.00 0.00 4.70
447 448 1.871418 TGGCTCATAACTCTGCTCCT 58.129 50.000 0.00 0.00 0.00 3.69
449 450 1.759445 GGCTCATAACTCTGCTCCTCA 59.241 52.381 0.00 0.00 0.00 3.86
450 451 2.224018 GGCTCATAACTCTGCTCCTCAG 60.224 54.545 0.00 0.00 44.21 3.35
452 453 3.490761 GCTCATAACTCTGCTCCTCAGAC 60.491 52.174 0.00 0.00 46.34 3.51
453 454 3.698539 CTCATAACTCTGCTCCTCAGACA 59.301 47.826 0.00 0.00 46.34 3.41
454 455 3.445450 TCATAACTCTGCTCCTCAGACAC 59.555 47.826 0.00 0.00 46.34 3.67
455 456 0.972883 AACTCTGCTCCTCAGACACC 59.027 55.000 0.00 0.00 46.34 4.16
457 458 0.972134 CTCTGCTCCTCAGACACCAA 59.028 55.000 0.00 0.00 46.34 3.67
458 459 0.681733 TCTGCTCCTCAGACACCAAC 59.318 55.000 0.00 0.00 46.34 3.77
459 460 0.668706 CTGCTCCTCAGACACCAACG 60.669 60.000 0.00 0.00 45.72 4.10
460 461 1.374758 GCTCCTCAGACACCAACGG 60.375 63.158 0.00 0.00 0.00 4.44
461 462 1.816863 GCTCCTCAGACACCAACGGA 61.817 60.000 0.00 0.00 0.00 4.69
462 463 0.244994 CTCCTCAGACACCAACGGAG 59.755 60.000 0.00 0.00 32.93 4.63
463 464 0.178973 TCCTCAGACACCAACGGAGA 60.179 55.000 0.00 0.00 32.90 3.71
475 476 3.799753 CGGAGAACGGATGCCAAG 58.200 61.111 0.00 0.00 39.42 3.61
476 477 1.079127 CGGAGAACGGATGCCAAGT 60.079 57.895 0.00 0.00 39.42 3.16
477 478 0.673644 CGGAGAACGGATGCCAAGTT 60.674 55.000 0.00 0.00 39.42 2.66
479 480 1.468914 GGAGAACGGATGCCAAGTTTC 59.531 52.381 0.00 0.00 0.00 2.78
480 481 2.427506 GAGAACGGATGCCAAGTTTCT 58.572 47.619 0.00 0.00 0.00 2.52
481 482 2.814336 GAGAACGGATGCCAAGTTTCTT 59.186 45.455 0.00 0.00 0.00 2.52
482 483 2.814336 AGAACGGATGCCAAGTTTCTTC 59.186 45.455 0.00 0.00 0.00 2.87
483 484 2.270352 ACGGATGCCAAGTTTCTTCA 57.730 45.000 0.00 0.00 0.00 3.02
485 486 2.749621 ACGGATGCCAAGTTTCTTCATC 59.250 45.455 0.00 0.00 34.41 2.92
486 487 2.098117 CGGATGCCAAGTTTCTTCATCC 59.902 50.000 14.72 14.72 45.88 3.51
487 488 2.428530 GGATGCCAAGTTTCTTCATCCC 59.571 50.000 14.18 0.00 44.46 3.85
488 489 1.533625 TGCCAAGTTTCTTCATCCCG 58.466 50.000 0.00 0.00 0.00 5.14
491 492 1.740025 CCAAGTTTCTTCATCCCGAGC 59.260 52.381 0.00 0.00 0.00 5.03
492 493 1.394917 CAAGTTTCTTCATCCCGAGCG 59.605 52.381 0.00 0.00 0.00 5.03
496 497 2.016393 TTCTTCATCCCGAGCGCGAT 62.016 55.000 12.10 1.23 40.82 4.58
497 498 2.279451 TTCATCCCGAGCGCGATG 60.279 61.111 12.10 14.57 40.82 3.84
498 499 2.683820 CTTCATCCCGAGCGCGATGA 62.684 60.000 18.09 18.09 42.36 2.92
500 501 3.983494 ATCCCGAGCGCGATGAGG 61.983 66.667 12.10 9.77 40.82 3.86
505 506 4.838152 GAGCGCGATGAGGCCCAA 62.838 66.667 12.10 0.00 0.00 4.12
508 509 4.812476 CGCGATGAGGCCCAACGA 62.812 66.667 21.92 0.00 42.69 3.85
509 510 3.195698 GCGATGAGGCCCAACGAC 61.196 66.667 21.92 12.47 42.69 4.34
510 511 2.264480 CGATGAGGCCCAACGACA 59.736 61.111 15.52 1.36 42.69 4.35
511 512 1.153369 CGATGAGGCCCAACGACAT 60.153 57.895 15.52 5.67 42.69 3.06
512 513 1.431488 CGATGAGGCCCAACGACATG 61.431 60.000 15.52 0.00 42.69 3.21
514 515 0.677731 ATGAGGCCCAACGACATGTG 60.678 55.000 1.15 0.00 0.00 3.21
515 516 2.672996 AGGCCCAACGACATGTGC 60.673 61.111 1.15 0.00 0.00 4.57
516 517 4.101790 GGCCCAACGACATGTGCG 62.102 66.667 1.15 9.63 0.00 5.34
518 519 4.444024 CCCAACGACATGTGCGCG 62.444 66.667 1.15 0.00 0.00 6.86
534 535 2.954611 CGCGTGTGGTCTCTCTCA 59.045 61.111 0.00 0.00 0.00 3.27
540 541 2.790433 GTGTGGTCTCTCTCACTCTCT 58.210 52.381 0.00 0.00 35.15 3.10
543 544 3.073798 TGTGGTCTCTCTCACTCTCTCTT 59.926 47.826 0.00 0.00 35.15 2.85
545 546 3.073798 TGGTCTCTCTCACTCTCTCTTGT 59.926 47.826 0.00 0.00 0.00 3.16
553 554 2.227626 TCACTCTCTCTTGTTCTCTGCG 59.772 50.000 0.00 0.00 0.00 5.18
563 564 1.272490 TGTTCTCTGCGTAGGTTCCTG 59.728 52.381 0.00 0.00 0.00 3.86
564 565 1.544691 GTTCTCTGCGTAGGTTCCTGA 59.455 52.381 0.00 0.00 0.00 3.86
565 566 1.174783 TCTCTGCGTAGGTTCCTGAC 58.825 55.000 0.00 0.00 0.00 3.51
569 570 2.093106 CTGCGTAGGTTCCTGACTAGT 58.907 52.381 0.00 0.00 0.00 2.57
570 571 3.054875 TCTGCGTAGGTTCCTGACTAGTA 60.055 47.826 0.00 0.00 0.00 1.82
572 573 2.617774 GCGTAGGTTCCTGACTAGTAGG 59.382 54.545 0.00 3.75 36.63 3.18
573 574 3.683847 GCGTAGGTTCCTGACTAGTAGGA 60.684 52.174 13.83 13.83 42.43 2.94
574 575 4.716794 CGTAGGTTCCTGACTAGTAGGAT 58.283 47.826 16.86 8.86 43.52 3.24
575 576 4.515944 CGTAGGTTCCTGACTAGTAGGATG 59.484 50.000 16.86 3.47 43.52 3.51
577 578 2.365941 GGTTCCTGACTAGTAGGATGGC 59.634 54.545 16.86 12.00 43.52 4.40
578 579 3.031736 GTTCCTGACTAGTAGGATGGCA 58.968 50.000 16.86 0.00 43.52 4.92
579 580 2.950781 TCCTGACTAGTAGGATGGCAG 58.049 52.381 13.83 7.48 39.36 4.85
580 581 1.967066 CCTGACTAGTAGGATGGCAGG 59.033 57.143 9.42 9.42 37.52 4.85
581 582 1.342819 CTGACTAGTAGGATGGCAGGC 59.657 57.143 0.00 0.00 0.00 4.85
582 583 1.342975 TGACTAGTAGGATGGCAGGCA 60.343 52.381 0.00 0.00 0.00 4.75
583 584 1.069358 GACTAGTAGGATGGCAGGCAC 59.931 57.143 0.00 0.00 0.00 5.01
585 586 0.686441 TAGTAGGATGGCAGGCACGT 60.686 55.000 0.00 0.00 0.00 4.49
586 587 0.686441 AGTAGGATGGCAGGCACGTA 60.686 55.000 0.00 0.00 0.00 3.57
587 588 0.529992 GTAGGATGGCAGGCACGTAC 60.530 60.000 0.00 6.28 0.00 3.67
589 590 1.521681 GGATGGCAGGCACGTACTC 60.522 63.158 0.00 0.00 0.00 2.59
591 592 2.925162 GATGGCAGGCACGTACTCCC 62.925 65.000 0.00 0.00 0.00 4.30
592 593 3.391382 GGCAGGCACGTACTCCCT 61.391 66.667 0.00 0.00 0.00 4.20
593 594 2.184579 GCAGGCACGTACTCCCTC 59.815 66.667 0.00 0.00 0.00 4.30
595 596 2.754658 AGGCACGTACTCCCTCCG 60.755 66.667 0.00 0.00 0.00 4.63
596 597 3.066814 GGCACGTACTCCCTCCGT 61.067 66.667 0.00 0.00 34.71 4.69
597 598 2.643232 GGCACGTACTCCCTCCGTT 61.643 63.158 0.00 0.00 31.46 4.44
598 599 1.153881 GCACGTACTCCCTCCGTTC 60.154 63.158 0.00 0.00 31.46 3.95
599 600 1.509923 CACGTACTCCCTCCGTTCC 59.490 63.158 0.00 0.00 31.46 3.62
600 601 1.075482 ACGTACTCCCTCCGTTCCA 59.925 57.895 0.00 0.00 0.00 3.53
602 603 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
603 604 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
604 605 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
605 606 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
607 608 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
608 609 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
609 610 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
610 611 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
611 612 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
612 613 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
614 615 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
615 616 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
616 617 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
617 618 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
618 619 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
619 620 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
621 622 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
622 623 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
623 624 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
624 625 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
647 648 0.033601 TGTTTTGGGTGTGTGCCTCT 60.034 50.000 0.00 0.00 0.00 3.69
751 770 4.080356 TGCCACTGCTCCAAGTAATAAGAT 60.080 41.667 0.00 0.00 38.71 2.40
752 771 4.513318 GCCACTGCTCCAAGTAATAAGATC 59.487 45.833 0.00 0.00 33.53 2.75
797 816 3.002791 GCTACAAGTGTCAATGCTAGCA 58.997 45.455 21.85 21.85 31.94 3.49
820 843 0.250640 AGCTGCTTGACCTCACCAAG 60.251 55.000 0.00 0.00 42.77 3.61
865 3344 1.536072 GCGAGAGATCCATGTTGCGTA 60.536 52.381 0.00 0.00 0.00 4.42
868 3347 1.476891 AGAGATCCATGTTGCGTACGT 59.523 47.619 17.90 0.00 0.00 3.57
913 3392 1.664151 GCAACATGGAGCCGTAACTAC 59.336 52.381 0.00 0.00 0.00 2.73
927 3406 4.782252 GTAACTACGACTGCAACAACAA 57.218 40.909 0.00 0.00 0.00 2.83
948 3427 8.686334 CAACAATCCTTTTACTGCCAATATAGT 58.314 33.333 0.00 0.00 0.00 2.12
949 3428 9.914834 AACAATCCTTTTACTGCCAATATAGTA 57.085 29.630 0.00 0.00 0.00 1.82
950 3429 9.338622 ACAATCCTTTTACTGCCAATATAGTAC 57.661 33.333 0.00 0.00 0.00 2.73
1017 3920 0.537188 GGATGGACTCTGCCGAAGAA 59.463 55.000 0.00 0.00 33.37 2.52
1018 3921 1.472376 GGATGGACTCTGCCGAAGAAG 60.472 57.143 0.00 0.00 33.37 2.85
1019 3922 1.478510 GATGGACTCTGCCGAAGAAGA 59.521 52.381 0.00 0.00 33.37 2.87
1113 4447 3.185797 CACACTCACATGTCATCACAGTG 59.814 47.826 0.00 10.89 35.41 3.66
1115 4449 4.251268 CACTCACATGTCATCACAGTGAT 58.749 43.478 10.53 10.53 38.69 3.06
1117 4451 5.870978 CACTCACATGTCATCACAGTGATAA 59.129 40.000 15.98 0.00 38.69 1.75
1122 4456 5.877012 ACATGTCATCACAGTGATAACCTTC 59.123 40.000 15.98 4.32 34.28 3.46
1140 4474 3.243068 CCTTCATAATAACTTGCACCGGC 60.243 47.826 0.00 0.00 41.68 6.13
1176 4528 0.600255 CCAGCTATAAGAACCGGCCG 60.600 60.000 21.04 21.04 0.00 6.13
1180 4532 0.674534 CTATAAGAACCGGCCGCTCT 59.325 55.000 22.85 20.62 0.00 4.09
1194 4546 1.372683 GCTCTCTGCCCAACTGACA 59.627 57.895 0.00 0.00 35.15 3.58
1195 4547 0.952984 GCTCTCTGCCCAACTGACAC 60.953 60.000 0.00 0.00 35.15 3.67
1196 4548 0.394192 CTCTCTGCCCAACTGACACA 59.606 55.000 0.00 0.00 0.00 3.72
1197 4549 0.394192 TCTCTGCCCAACTGACACAG 59.606 55.000 0.00 0.00 37.52 3.66
1198 4550 0.394192 CTCTGCCCAACTGACACAGA 59.606 55.000 5.76 0.00 35.18 3.41
1204 4556 1.607509 CCCAACTGACACAGAGCAGAG 60.608 57.143 5.76 0.00 36.07 3.35
1207 4559 0.317799 ACTGACACAGAGCAGAGCAG 59.682 55.000 5.76 0.00 36.07 4.24
1231 4583 3.283684 CGCCACCGTTGCAGGAAA 61.284 61.111 0.00 0.00 34.73 3.13
1232 4584 2.625823 CGCCACCGTTGCAGGAAAT 61.626 57.895 0.00 0.00 34.73 2.17
1233 4585 1.080569 GCCACCGTTGCAGGAAATG 60.081 57.895 0.00 0.00 34.73 2.32
1234 4586 1.586028 CCACCGTTGCAGGAAATGG 59.414 57.895 0.00 0.00 41.30 3.16
1235 4587 0.893270 CCACCGTTGCAGGAAATGGA 60.893 55.000 5.23 0.00 38.32 3.41
1236 4588 1.176527 CACCGTTGCAGGAAATGGAT 58.823 50.000 5.23 0.00 38.32 3.41
1237 4589 1.545582 CACCGTTGCAGGAAATGGATT 59.454 47.619 5.23 0.00 38.32 3.01
1238 4590 1.545582 ACCGTTGCAGGAAATGGATTG 59.454 47.619 5.23 0.00 38.32 2.67
1239 4591 1.632422 CGTTGCAGGAAATGGATTGC 58.368 50.000 0.00 0.00 37.09 3.56
1240 4592 1.632422 GTTGCAGGAAATGGATTGCG 58.368 50.000 0.00 0.00 39.34 4.85
1241 4593 0.531657 TTGCAGGAAATGGATTGCGG 59.468 50.000 0.00 0.00 39.34 5.69
1242 4594 0.611618 TGCAGGAAATGGATTGCGGT 60.612 50.000 0.00 0.00 39.34 5.68
1243 4595 1.340502 TGCAGGAAATGGATTGCGGTA 60.341 47.619 0.00 0.00 39.34 4.02
1244 4596 1.065551 GCAGGAAATGGATTGCGGTAC 59.934 52.381 0.00 0.00 34.01 3.34
1245 4597 1.676006 CAGGAAATGGATTGCGGTACC 59.324 52.381 0.16 0.16 34.01 3.34
1248 4605 1.329599 GAAATGGATTGCGGTACCGAC 59.670 52.381 37.62 26.69 42.83 4.79
1251 4608 1.153784 GGATTGCGGTACCGACGAA 60.154 57.895 37.62 24.37 42.83 3.85
1343 4715 4.796495 CCCCGCAGCCAAGGTACC 62.796 72.222 2.73 2.73 0.00 3.34
1345 4717 4.388499 CCGCAGCCAAGGTACCGT 62.388 66.667 6.18 0.00 0.00 4.83
1346 4718 3.118454 CGCAGCCAAGGTACCGTG 61.118 66.667 19.78 19.78 0.00 4.94
1347 4719 2.345991 GCAGCCAAGGTACCGTGA 59.654 61.111 27.06 0.00 0.00 4.35
1351 4723 0.893447 AGCCAAGGTACCGTGACTAC 59.107 55.000 27.06 13.91 0.00 2.73
1353 4725 0.171903 CCAAGGTACCGTGACTACCG 59.828 60.000 27.06 7.21 39.03 4.02
1354 4726 0.883833 CAAGGTACCGTGACTACCGT 59.116 55.000 21.87 0.00 39.03 4.83
1355 4727 1.135575 CAAGGTACCGTGACTACCGTC 60.136 57.143 21.87 0.00 39.03 4.79
1356 4728 0.678048 AGGTACCGTGACTACCGTCC 60.678 60.000 6.18 0.00 39.03 4.79
1357 4729 1.657751 GGTACCGTGACTACCGTCCC 61.658 65.000 0.00 0.00 39.47 4.46
1358 4730 0.678048 GTACCGTGACTACCGTCCCT 60.678 60.000 0.00 0.00 39.47 4.20
1359 4731 0.908910 TACCGTGACTACCGTCCCTA 59.091 55.000 0.00 0.00 39.47 3.53
1360 4732 0.678048 ACCGTGACTACCGTCCCTAC 60.678 60.000 0.00 0.00 39.47 3.18
1361 4733 1.379642 CCGTGACTACCGTCCCTACC 61.380 65.000 0.00 0.00 39.47 3.18
1362 4734 0.677731 CGTGACTACCGTCCCTACCA 60.678 60.000 0.00 0.00 39.47 3.25
1367 4739 1.038280 CTACCGTCCCTACCACATCC 58.962 60.000 0.00 0.00 0.00 3.51
1368 4740 0.335705 TACCGTCCCTACCACATCCA 59.664 55.000 0.00 0.00 0.00 3.41
1369 4741 0.326238 ACCGTCCCTACCACATCCAT 60.326 55.000 0.00 0.00 0.00 3.41
1370 4742 0.106708 CCGTCCCTACCACATCCATG 59.893 60.000 0.00 0.00 0.00 3.66
1371 4743 0.532862 CGTCCCTACCACATCCATGC 60.533 60.000 0.00 0.00 0.00 4.06
1372 4744 0.546122 GTCCCTACCACATCCATGCA 59.454 55.000 0.00 0.00 0.00 3.96
1378 4750 0.921166 ACCACATCCATGCATCTCCA 59.079 50.000 0.00 0.00 0.00 3.86
1388 4760 2.945080 TGCATCTCCATGATTCCTCC 57.055 50.000 0.00 0.00 32.05 4.30
1441 4813 3.143168 CCCCTAATTCTCTCCCTAGTCCT 59.857 52.174 0.00 0.00 0.00 3.85
1442 4814 4.412843 CCCTAATTCTCTCCCTAGTCCTC 58.587 52.174 0.00 0.00 0.00 3.71
1443 4815 4.140900 CCCTAATTCTCTCCCTAGTCCTCA 60.141 50.000 0.00 0.00 0.00 3.86
1444 4816 5.459505 CCTAATTCTCTCCCTAGTCCTCAA 58.540 45.833 0.00 0.00 0.00 3.02
1445 4817 5.900123 CCTAATTCTCTCCCTAGTCCTCAAA 59.100 44.000 0.00 0.00 0.00 2.69
1446 4818 6.384305 CCTAATTCTCTCCCTAGTCCTCAAAA 59.616 42.308 0.00 0.00 0.00 2.44
1447 4819 5.948742 ATTCTCTCCCTAGTCCTCAAAAG 57.051 43.478 0.00 0.00 0.00 2.27
1458 4830 1.626321 TCCTCAAAAGACATACGCCCA 59.374 47.619 0.00 0.00 0.00 5.36
1459 4831 2.238646 TCCTCAAAAGACATACGCCCAT 59.761 45.455 0.00 0.00 0.00 4.00
1460 4832 2.355756 CCTCAAAAGACATACGCCCATG 59.644 50.000 0.00 0.00 0.00 3.66
1461 4833 3.270027 CTCAAAAGACATACGCCCATGA 58.730 45.455 0.00 0.00 0.00 3.07
1466 4838 3.777106 AGACATACGCCCATGAATGAT 57.223 42.857 0.00 0.00 0.00 2.45
1477 4849 4.556104 GCCCATGAATGATCACTTCAATCG 60.556 45.833 18.28 12.39 37.11 3.34
1488 4865 0.452987 CTTCAATCGCACCACCATGG 59.547 55.000 11.19 11.19 45.02 3.66
1492 4869 0.034186 AATCGCACCACCATGGATGT 60.034 50.000 21.47 12.04 40.96 3.06
1493 4870 0.836606 ATCGCACCACCATGGATGTA 59.163 50.000 21.47 6.87 40.96 2.29
1495 4872 0.946528 CGCACCACCATGGATGTATG 59.053 55.000 21.47 13.47 40.96 2.39
1500 4877 4.456911 GCACCACCATGGATGTATGATTAG 59.543 45.833 21.47 2.40 40.96 1.73
1516 4893 9.998106 TGTATGATTAGTTAATTTCCTCCTAGC 57.002 33.333 0.00 0.00 0.00 3.42
1527 4904 1.644337 TCCTCCTAGCTAGGTGAACCA 59.356 52.381 33.65 17.41 44.02 3.67
1571 4948 6.767524 AATTAATCTGCACGGGTCAATTAA 57.232 33.333 0.00 0.00 0.00 1.40
1598 4975 4.636206 GGTGTGCTACTGCTAGCTTAATTT 59.364 41.667 17.23 0.00 45.20 1.82
1599 4976 5.123979 GGTGTGCTACTGCTAGCTTAATTTT 59.876 40.000 17.23 0.00 45.20 1.82
1622 4999 4.892934 TGCAGAGAGTGGTTGGTTAATTTT 59.107 37.500 0.00 0.00 0.00 1.82
1674 7656 3.062466 CGAGGAGAGGACGCACCA 61.062 66.667 2.21 0.00 42.04 4.17
1675 7657 2.574399 GAGGAGAGGACGCACCAC 59.426 66.667 2.21 0.00 42.04 4.16
1700 7682 3.007635 CGGGTGGTTTATCAGTCCTTTC 58.992 50.000 0.00 0.00 0.00 2.62
1704 7686 5.070685 GGTGGTTTATCAGTCCTTTCTGTT 58.929 41.667 0.00 0.00 36.85 3.16
1715 7704 1.002087 CCTTTCTGTTAGTCCCGCACT 59.998 52.381 0.00 0.00 39.41 4.40
1723 7712 2.338577 TAGTCCCGCACTCTACCTAC 57.661 55.000 0.00 0.00 36.43 3.18
1742 7731 3.204306 ACATTGATGCATCTCCGTGAT 57.796 42.857 26.32 8.82 35.40 3.06
1778 7774 4.407621 TCCTTATAGAATCTGCCGTCCAAA 59.592 41.667 0.00 0.00 0.00 3.28
1786 7782 1.794151 CTGCCGTCCAAACATGTGCA 61.794 55.000 0.00 1.39 0.00 4.57
1827 8118 9.125026 GACCCAGTTGTTCATCTATTTTCATAT 57.875 33.333 0.00 0.00 0.00 1.78
1902 8193 2.267351 CCACAACATCGGCAAGGCA 61.267 57.895 0.00 0.00 0.00 4.75
1927 8218 1.781786 GATGCTCCTCCAGTACCTCA 58.218 55.000 0.00 0.00 0.00 3.86
1971 8262 2.556459 CGGCTCCATCTCGGACGAT 61.556 63.158 0.00 0.00 39.64 3.73
1981 8272 4.794439 CGGACGATGAGGTGCGCA 62.794 66.667 5.66 5.66 44.40 6.09
1998 8289 0.095417 GCAACGAGATCGCAAAGGAC 59.905 55.000 1.39 0.00 44.43 3.85
2031 8322 3.119096 GGCTTCGACCGCCTCAAC 61.119 66.667 15.76 0.00 44.17 3.18
2076 8367 2.442643 CGCCATTTCCCTGCCCAT 60.443 61.111 0.00 0.00 0.00 4.00
2078 8369 1.381599 GCCATTTCCCTGCCCATCA 60.382 57.895 0.00 0.00 0.00 3.07
2087 8378 0.754217 CCTGCCCATCATGACCTTGG 60.754 60.000 0.00 1.55 0.00 3.61
2151 8456 4.532916 TGCACTAGGTACCCATCAAGTTAA 59.467 41.667 8.74 0.00 0.00 2.01
2304 8612 1.021968 GGGGTATGCGAATTGTGACC 58.978 55.000 0.00 0.00 0.00 4.02
2381 8689 1.915228 CCGGGTGTTCCTGATCCAT 59.085 57.895 0.00 0.00 42.46 3.41
2402 8710 0.330941 TGCCCTACATGTTCATGGCA 59.669 50.000 19.93 19.93 45.96 4.92
2466 8774 2.088423 AGAAGTTTGTGTTTGTCGCCA 58.912 42.857 0.00 0.00 0.00 5.69
2536 8844 1.515954 CCGAGGAGTACGGTTGCAT 59.484 57.895 0.00 0.00 44.57 3.96
2557 8865 3.408634 TGTTGAAGCTTTAGGGCTACAC 58.591 45.455 0.00 0.00 42.24 2.90
2595 9051 4.891168 CCAAATCCATCTGATGATTGGACA 59.109 41.667 27.53 2.74 38.98 4.02
2738 9198 4.877823 TGACATGTAGAGCTATGCCAAAAG 59.122 41.667 0.00 0.00 0.00 2.27
2754 9214 3.359950 CAAAAGAGGCTCCCTGCTTTAT 58.640 45.455 11.71 0.00 42.39 1.40
2763 9223 5.608860 AGGCTCCCTGCTTTATAGATAAAGT 59.391 40.000 18.65 0.00 46.78 2.66
2764 9224 6.787957 AGGCTCCCTGCTTTATAGATAAAGTA 59.212 38.462 18.65 14.89 46.78 2.24
2766 9226 8.103935 GGCTCCCTGCTTTATAGATAAAGTAAT 58.896 37.037 18.65 0.00 46.78 1.89
2793 9254 6.093495 ACCATGATACAAACGAATCGAACAAT 59.907 34.615 10.55 0.00 0.00 2.71
2881 9370 4.744631 CCCATACAACTTCAAGCAAACAAC 59.255 41.667 0.00 0.00 0.00 3.32
2896 9385 5.086058 GCAAACAACAGATGTACAATACGG 58.914 41.667 0.00 0.00 42.99 4.02
2949 9438 3.083997 GAGCCACCACGGAGGGAT 61.084 66.667 1.51 0.00 43.89 3.85
2988 9477 1.637553 ACCATGAGATCCAAGGCTGTT 59.362 47.619 0.00 0.00 37.14 3.16
3010 9499 2.430694 TCATCAAGATGGGTAGGACACG 59.569 50.000 9.96 0.00 39.24 4.49
3021 9518 0.324368 TAGGACACGGGAGCACATCT 60.324 55.000 0.00 0.00 0.00 2.90
3054 9551 8.790718 CGATCCAAAGGATAATGATTTTCATCT 58.209 33.333 0.00 0.00 43.27 2.90
3056 9553 9.650714 ATCCAAAGGATAATGATTTTCATCTGA 57.349 29.630 0.00 0.00 41.16 3.27
3059 9556 7.502120 AAGGATAATGATTTTCATCTGACGG 57.498 36.000 0.00 0.00 35.76 4.79
3110 9607 4.268359 GAAGCCTTCAAGGAACTGATGAT 58.732 43.478 7.98 0.00 40.86 2.45
3117 9614 0.994247 AGGAACTGATGATGCCCACA 59.006 50.000 0.00 0.00 37.18 4.17
3124 9621 0.254178 GATGATGCCCACAGACACCT 59.746 55.000 0.00 0.00 0.00 4.00
3145 9642 2.436646 CTGTCGGCCTGGCGAAAT 60.437 61.111 17.61 0.00 0.00 2.17
3166 9663 5.755409 ATCCAAACAAGAATTTTACCCCC 57.245 39.130 0.00 0.00 0.00 5.40
3167 9664 4.557705 TCCAAACAAGAATTTTACCCCCA 58.442 39.130 0.00 0.00 0.00 4.96
3169 9666 4.346709 CCAAACAAGAATTTTACCCCCACT 59.653 41.667 0.00 0.00 0.00 4.00
3171 9668 6.042208 CCAAACAAGAATTTTACCCCCACTAA 59.958 38.462 0.00 0.00 0.00 2.24
3180 9677 2.291043 CCCCCACTAACCGCTCTGT 61.291 63.158 0.00 0.00 0.00 3.41
3183 9680 1.471119 CCCACTAACCGCTCTGTCTA 58.529 55.000 0.00 0.00 0.00 2.59
3238 9735 3.062763 CGCACCATCTCCATAGAACATC 58.937 50.000 0.00 0.00 34.73 3.06
3239 9736 3.493176 CGCACCATCTCCATAGAACATCA 60.493 47.826 0.00 0.00 34.73 3.07
3249 9746 8.891985 TCTCCATAGAACATCATATTCTAGCT 57.108 34.615 0.00 0.00 40.94 3.32
3309 9806 4.575973 GCCATGAGCTCCGCCCAT 62.576 66.667 12.15 0.00 38.99 4.00
3333 9830 1.330521 CACCACAACTTTCACCACTCG 59.669 52.381 0.00 0.00 0.00 4.18
3357 9854 1.533753 CTGCCCCAACAACCATGGT 60.534 57.895 13.00 13.00 36.14 3.55
3361 10021 1.154921 CCCAACAACCATGGTCCCA 59.845 57.895 20.07 0.00 36.14 4.37
3376 10036 1.076727 CCCAACTCCAAACCCCCTC 59.923 63.158 0.00 0.00 0.00 4.30
3538 10202 9.653287 AGAGAATTGTTAATCGAGTAATCACAA 57.347 29.630 8.74 9.52 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.642996 ATCGTCGCGCCCATCATCAA 62.643 55.000 0.00 0.00 0.00 2.57
170 171 4.559063 CCATGGAGAGCGCCCAGG 62.559 72.222 5.56 6.28 37.08 4.45
171 172 2.826777 AAACCATGGAGAGCGCCCAG 62.827 60.000 21.47 0.00 37.08 4.45
172 173 1.558167 TAAACCATGGAGAGCGCCCA 61.558 55.000 21.47 4.71 38.19 5.36
173 174 0.815615 CTAAACCATGGAGAGCGCCC 60.816 60.000 21.47 0.00 0.00 6.13
174 175 0.107654 ACTAAACCATGGAGAGCGCC 60.108 55.000 21.47 0.00 0.00 6.53
177 178 5.472137 TGTTACAAACTAAACCATGGAGAGC 59.528 40.000 21.47 0.00 0.00 4.09
178 179 7.362056 CCATGTTACAAACTAAACCATGGAGAG 60.362 40.741 21.47 14.23 36.93 3.20
179 180 6.432783 CCATGTTACAAACTAAACCATGGAGA 59.567 38.462 21.47 1.42 36.93 3.71
180 181 6.620678 CCATGTTACAAACTAAACCATGGAG 58.379 40.000 21.47 8.22 36.93 3.86
181 182 5.047660 GCCATGTTACAAACTAAACCATGGA 60.048 40.000 21.47 0.00 36.93 3.41
182 183 5.167845 GCCATGTTACAAACTAAACCATGG 58.832 41.667 11.19 11.19 37.35 3.66
183 184 5.167845 GGCCATGTTACAAACTAAACCATG 58.832 41.667 0.00 0.00 0.00 3.66
184 185 4.082463 CGGCCATGTTACAAACTAAACCAT 60.082 41.667 2.24 0.00 0.00 3.55
185 186 3.253677 CGGCCATGTTACAAACTAAACCA 59.746 43.478 2.24 0.00 0.00 3.67
186 187 3.253921 ACGGCCATGTTACAAACTAAACC 59.746 43.478 2.24 0.00 0.00 3.27
189 190 2.226912 GCACGGCCATGTTACAAACTAA 59.773 45.455 2.24 0.00 0.00 2.24
190 191 1.807742 GCACGGCCATGTTACAAACTA 59.192 47.619 2.24 0.00 0.00 2.24
191 192 0.596082 GCACGGCCATGTTACAAACT 59.404 50.000 2.24 0.00 0.00 2.66
192 193 0.596082 AGCACGGCCATGTTACAAAC 59.404 50.000 2.24 0.00 0.00 2.93
193 194 0.878416 GAGCACGGCCATGTTACAAA 59.122 50.000 2.24 0.00 0.00 2.83
194 195 0.036164 AGAGCACGGCCATGTTACAA 59.964 50.000 2.24 0.00 0.00 2.41
195 196 0.673333 CAGAGCACGGCCATGTTACA 60.673 55.000 2.24 0.00 0.00 2.41
196 197 1.982073 GCAGAGCACGGCCATGTTAC 61.982 60.000 2.24 0.00 0.00 2.50
197 198 1.745115 GCAGAGCACGGCCATGTTA 60.745 57.895 2.24 0.00 0.00 2.41
198 199 3.058160 GCAGAGCACGGCCATGTT 61.058 61.111 2.24 0.00 0.00 2.71
199 200 3.965539 GAGCAGAGCACGGCCATGT 62.966 63.158 2.24 0.00 37.92 3.21
200 201 3.200593 GAGCAGAGCACGGCCATG 61.201 66.667 2.24 0.00 37.92 3.66
201 202 3.397439 AGAGCAGAGCACGGCCAT 61.397 61.111 2.24 0.00 37.92 4.40
202 203 4.383861 CAGAGCAGAGCACGGCCA 62.384 66.667 2.24 0.00 37.92 5.36
204 205 4.756458 AGCAGAGCAGAGCACGGC 62.756 66.667 0.00 0.00 39.91 5.68
205 206 2.575125 ATCAGCAGAGCAGAGCACGG 62.575 60.000 0.00 0.00 0.00 4.94
206 207 1.146957 GATCAGCAGAGCAGAGCACG 61.147 60.000 0.00 0.00 31.10 5.34
207 208 0.108281 TGATCAGCAGAGCAGAGCAC 60.108 55.000 0.00 0.00 35.73 4.40
208 209 0.611714 TTGATCAGCAGAGCAGAGCA 59.388 50.000 0.00 0.00 41.81 4.26
209 210 1.292061 CTTGATCAGCAGAGCAGAGC 58.708 55.000 0.00 0.00 41.81 4.09
213 214 0.323957 AGCACTTGATCAGCAGAGCA 59.676 50.000 16.08 0.00 38.62 4.26
215 216 2.159824 CACAAGCACTTGATCAGCAGAG 59.840 50.000 16.95 0.00 42.93 3.35
216 217 2.148768 CACAAGCACTTGATCAGCAGA 58.851 47.619 16.95 0.00 42.93 4.26
217 218 1.878088 ACACAAGCACTTGATCAGCAG 59.122 47.619 16.95 0.77 42.93 4.24
218 219 1.605232 CACACAAGCACTTGATCAGCA 59.395 47.619 16.95 0.00 42.93 4.41
219 220 1.665161 GCACACAAGCACTTGATCAGC 60.665 52.381 16.95 10.66 42.93 4.26
220 221 1.605232 TGCACACAAGCACTTGATCAG 59.395 47.619 16.95 6.42 42.93 2.90
221 222 1.677942 TGCACACAAGCACTTGATCA 58.322 45.000 16.95 0.00 42.93 2.92
223 224 1.750206 TGTTGCACACAAGCACTTGAT 59.250 42.857 16.95 2.13 45.61 2.57
225 226 2.212869 ATGTTGCACACAAGCACTTG 57.787 45.000 8.82 8.82 45.61 3.16
226 227 2.542597 CAATGTTGCACACAAGCACTT 58.457 42.857 5.94 0.00 45.61 3.16
227 228 1.202440 CCAATGTTGCACACAAGCACT 60.202 47.619 5.94 0.00 45.61 4.40
228 229 1.210870 CCAATGTTGCACACAAGCAC 58.789 50.000 5.94 0.00 45.61 4.40
229 230 0.822811 ACCAATGTTGCACACAAGCA 59.177 45.000 5.94 0.00 43.99 3.91
232 233 2.005451 GCAAACCAATGTTGCACACAA 58.995 42.857 4.34 0.00 39.50 3.33
233 234 1.206610 AGCAAACCAATGTTGCACACA 59.793 42.857 11.34 4.56 40.71 3.72
235 236 2.687700 AAGCAAACCAATGTTGCACA 57.312 40.000 11.34 0.00 34.13 4.57
236 237 4.749099 TGATTAAGCAAACCAATGTTGCAC 59.251 37.500 11.34 0.00 34.13 4.57
242 243 8.225107 CAGAAAATGTGATTAAGCAAACCAATG 58.775 33.333 0.00 0.00 0.00 2.82
243 244 7.388500 CCAGAAAATGTGATTAAGCAAACCAAT 59.612 33.333 0.00 0.00 0.00 3.16
244 245 6.705381 CCAGAAAATGTGATTAAGCAAACCAA 59.295 34.615 0.00 0.00 0.00 3.67
245 246 6.222389 CCAGAAAATGTGATTAAGCAAACCA 58.778 36.000 0.00 0.00 0.00 3.67
246 247 5.120674 GCCAGAAAATGTGATTAAGCAAACC 59.879 40.000 0.00 0.00 0.00 3.27
247 248 5.695816 TGCCAGAAAATGTGATTAAGCAAAC 59.304 36.000 0.00 0.00 0.00 2.93
248 249 5.851720 TGCCAGAAAATGTGATTAAGCAAA 58.148 33.333 0.00 0.00 0.00 3.68
249 250 5.465532 TGCCAGAAAATGTGATTAAGCAA 57.534 34.783 0.00 0.00 0.00 3.91
250 251 5.465532 TTGCCAGAAAATGTGATTAAGCA 57.534 34.783 0.00 0.00 0.00 3.91
251 252 5.928264 AGTTTGCCAGAAAATGTGATTAAGC 59.072 36.000 0.00 0.00 0.00 3.09
253 254 7.048629 TCAGTTTGCCAGAAAATGTGATTAA 57.951 32.000 0.00 0.00 0.00 1.40
254 255 6.647334 TCAGTTTGCCAGAAAATGTGATTA 57.353 33.333 0.00 0.00 0.00 1.75
255 256 5.534207 TCAGTTTGCCAGAAAATGTGATT 57.466 34.783 0.00 0.00 0.00 2.57
256 257 5.534207 TTCAGTTTGCCAGAAAATGTGAT 57.466 34.783 0.00 0.00 0.00 3.06
257 258 4.998671 TTCAGTTTGCCAGAAAATGTGA 57.001 36.364 0.00 0.00 0.00 3.58
259 260 5.111293 CAGTTTCAGTTTGCCAGAAAATGT 58.889 37.500 0.00 0.00 40.44 2.71
260 261 4.508861 CCAGTTTCAGTTTGCCAGAAAATG 59.491 41.667 0.00 0.00 43.16 2.32
262 263 3.678529 GCCAGTTTCAGTTTGCCAGAAAA 60.679 43.478 0.00 0.00 33.54 2.29
263 264 2.159114 GCCAGTTTCAGTTTGCCAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
266 267 0.746063 TGCCAGTTTCAGTTTGCCAG 59.254 50.000 0.00 0.00 0.00 4.85
269 270 3.983344 CAGTATTGCCAGTTTCAGTTTGC 59.017 43.478 0.00 0.00 0.00 3.68
271 272 6.296026 TCTACAGTATTGCCAGTTTCAGTTT 58.704 36.000 0.00 0.00 0.00 2.66
272 273 5.865085 TCTACAGTATTGCCAGTTTCAGTT 58.135 37.500 0.00 0.00 0.00 3.16
273 274 5.483685 TCTACAGTATTGCCAGTTTCAGT 57.516 39.130 0.00 0.00 0.00 3.41
276 277 6.874134 TCTCTTTCTACAGTATTGCCAGTTTC 59.126 38.462 0.00 0.00 0.00 2.78
277 278 6.769512 TCTCTTTCTACAGTATTGCCAGTTT 58.230 36.000 0.00 0.00 0.00 2.66
278 279 6.211584 TCTCTCTTTCTACAGTATTGCCAGTT 59.788 38.462 0.00 0.00 0.00 3.16
279 280 5.717178 TCTCTCTTTCTACAGTATTGCCAGT 59.283 40.000 0.00 0.00 0.00 4.00
281 282 5.952347 TCTCTCTCTTTCTACAGTATTGCCA 59.048 40.000 0.00 0.00 0.00 4.92
282 283 6.458232 TCTCTCTCTTTCTACAGTATTGCC 57.542 41.667 0.00 0.00 0.00 4.52
283 284 6.922957 CCATCTCTCTCTTTCTACAGTATTGC 59.077 42.308 0.00 0.00 0.00 3.56
285 286 8.278639 TCTCCATCTCTCTCTTTCTACAGTATT 58.721 37.037 0.00 0.00 0.00 1.89
288 289 6.073447 TCTCCATCTCTCTCTTTCTACAGT 57.927 41.667 0.00 0.00 0.00 3.55
289 290 7.719193 TGTATCTCCATCTCTCTCTTTCTACAG 59.281 40.741 0.00 0.00 0.00 2.74
290 291 7.578203 TGTATCTCCATCTCTCTCTTTCTACA 58.422 38.462 0.00 0.00 0.00 2.74
294 295 6.959639 ACTGTATCTCCATCTCTCTCTTTC 57.040 41.667 0.00 0.00 0.00 2.62
295 296 7.582719 ACTACTGTATCTCCATCTCTCTCTTT 58.417 38.462 0.00 0.00 0.00 2.52
296 297 7.149202 ACTACTGTATCTCCATCTCTCTCTT 57.851 40.000 0.00 0.00 0.00 2.85
297 298 6.518369 CGACTACTGTATCTCCATCTCTCTCT 60.518 46.154 0.00 0.00 0.00 3.10
298 299 5.637810 CGACTACTGTATCTCCATCTCTCTC 59.362 48.000 0.00 0.00 0.00 3.20
300 301 5.302360 ACGACTACTGTATCTCCATCTCTC 58.698 45.833 0.00 0.00 0.00 3.20
301 302 5.298989 ACGACTACTGTATCTCCATCTCT 57.701 43.478 0.00 0.00 0.00 3.10
303 304 4.059511 CGACGACTACTGTATCTCCATCT 58.940 47.826 0.00 0.00 0.00 2.90
305 306 3.139850 CCGACGACTACTGTATCTCCAT 58.860 50.000 0.00 0.00 0.00 3.41
306 307 2.558378 CCGACGACTACTGTATCTCCA 58.442 52.381 0.00 0.00 0.00 3.86
307 308 1.263752 GCCGACGACTACTGTATCTCC 59.736 57.143 0.00 0.00 0.00 3.71
309 310 0.935898 CGCCGACGACTACTGTATCT 59.064 55.000 0.00 0.00 43.93 1.98
310 311 0.656786 GCGCCGACGACTACTGTATC 60.657 60.000 0.00 0.00 43.93 2.24
312 313 1.742880 AGCGCCGACGACTACTGTA 60.743 57.895 2.29 0.00 43.93 2.74
313 314 3.054503 AGCGCCGACGACTACTGT 61.055 61.111 2.29 0.00 43.93 3.55
314 315 2.523184 TTCAGCGCCGACGACTACTG 62.523 60.000 2.29 0.00 43.93 2.74
315 316 1.859427 TTTCAGCGCCGACGACTACT 61.859 55.000 2.29 0.00 43.93 2.57
316 317 1.403972 CTTTCAGCGCCGACGACTAC 61.404 60.000 2.29 0.00 43.93 2.73
317 318 1.154093 CTTTCAGCGCCGACGACTA 60.154 57.895 2.29 0.00 43.93 2.59
318 319 2.430921 CTTTCAGCGCCGACGACT 60.431 61.111 2.29 0.00 43.93 4.18
322 323 1.706287 GATTCCCTTTCAGCGCCGAC 61.706 60.000 2.29 0.00 0.00 4.79
323 324 1.449601 GATTCCCTTTCAGCGCCGA 60.450 57.895 2.29 0.00 0.00 5.54
324 325 1.450312 AGATTCCCTTTCAGCGCCG 60.450 57.895 2.29 0.00 0.00 6.46
325 326 0.678048 ACAGATTCCCTTTCAGCGCC 60.678 55.000 2.29 0.00 0.00 6.53
327 328 2.005451 CAGACAGATTCCCTTTCAGCG 58.995 52.381 0.00 0.00 0.00 5.18
329 330 3.257393 CGACAGACAGATTCCCTTTCAG 58.743 50.000 0.00 0.00 0.00 3.02
331 332 2.028020 ACCGACAGACAGATTCCCTTTC 60.028 50.000 0.00 0.00 0.00 2.62
333 334 1.550976 GACCGACAGACAGATTCCCTT 59.449 52.381 0.00 0.00 0.00 3.95
334 335 1.187087 GACCGACAGACAGATTCCCT 58.813 55.000 0.00 0.00 0.00 4.20
335 336 1.134965 CAGACCGACAGACAGATTCCC 60.135 57.143 0.00 0.00 0.00 3.97
336 337 1.546476 ACAGACCGACAGACAGATTCC 59.454 52.381 0.00 0.00 0.00 3.01
339 340 1.270826 CACACAGACCGACAGACAGAT 59.729 52.381 0.00 0.00 0.00 2.90
340 341 0.668535 CACACAGACCGACAGACAGA 59.331 55.000 0.00 0.00 0.00 3.41
341 342 0.668535 TCACACAGACCGACAGACAG 59.331 55.000 0.00 0.00 0.00 3.51
342 343 1.000274 CATCACACAGACCGACAGACA 60.000 52.381 0.00 0.00 0.00 3.41
343 344 1.670087 CCATCACACAGACCGACAGAC 60.670 57.143 0.00 0.00 0.00 3.51
344 345 0.603065 CCATCACACAGACCGACAGA 59.397 55.000 0.00 0.00 0.00 3.41
345 346 0.603065 TCCATCACACAGACCGACAG 59.397 55.000 0.00 0.00 0.00 3.51
346 347 1.066929 CATCCATCACACAGACCGACA 60.067 52.381 0.00 0.00 0.00 4.35
348 349 0.536724 CCATCCATCACACAGACCGA 59.463 55.000 0.00 0.00 0.00 4.69
349 350 0.536724 TCCATCCATCACACAGACCG 59.463 55.000 0.00 0.00 0.00 4.79
350 351 2.569059 CATCCATCCATCACACAGACC 58.431 52.381 0.00 0.00 0.00 3.85
351 352 2.171237 TCCATCCATCCATCACACAGAC 59.829 50.000 0.00 0.00 0.00 3.51
352 353 2.480390 TCCATCCATCCATCACACAGA 58.520 47.619 0.00 0.00 0.00 3.41
353 354 3.146847 CATCCATCCATCCATCACACAG 58.853 50.000 0.00 0.00 0.00 3.66
354 355 2.158579 CCATCCATCCATCCATCACACA 60.159 50.000 0.00 0.00 0.00 3.72
357 358 2.511659 CACCATCCATCCATCCATCAC 58.488 52.381 0.00 0.00 0.00 3.06
359 360 1.426598 ACCACCATCCATCCATCCATC 59.573 52.381 0.00 0.00 0.00 3.51
360 361 1.537800 ACCACCATCCATCCATCCAT 58.462 50.000 0.00 0.00 0.00 3.41
361 362 2.057140 CTACCACCATCCATCCATCCA 58.943 52.381 0.00 0.00 0.00 3.41
362 363 1.271597 GCTACCACCATCCATCCATCC 60.272 57.143 0.00 0.00 0.00 3.51
363 364 1.701847 AGCTACCACCATCCATCCATC 59.298 52.381 0.00 0.00 0.00 3.51
364 365 1.422781 CAGCTACCACCATCCATCCAT 59.577 52.381 0.00 0.00 0.00 3.41
366 367 0.536006 GCAGCTACCACCATCCATCC 60.536 60.000 0.00 0.00 0.00 3.51
369 370 1.299648 GTGCAGCTACCACCATCCA 59.700 57.895 5.59 0.00 0.00 3.41
370 371 1.815421 CGTGCAGCTACCACCATCC 60.815 63.158 10.16 0.00 0.00 3.51
371 372 0.807667 CTCGTGCAGCTACCACCATC 60.808 60.000 10.16 0.00 0.00 3.51
373 374 2.656646 CTCGTGCAGCTACCACCA 59.343 61.111 10.16 0.00 0.00 4.17
374 375 2.125512 CCTCGTGCAGCTACCACC 60.126 66.667 10.16 0.00 0.00 4.61
375 376 2.125512 CCCTCGTGCAGCTACCAC 60.126 66.667 6.62 6.62 0.00 4.16
378 379 1.352156 CGTTTCCCTCGTGCAGCTAC 61.352 60.000 0.00 0.00 0.00 3.58
379 380 1.080093 CGTTTCCCTCGTGCAGCTA 60.080 57.895 0.00 0.00 0.00 3.32
380 381 2.357517 CGTTTCCCTCGTGCAGCT 60.358 61.111 0.00 0.00 0.00 4.24
381 382 3.423154 CCGTTTCCCTCGTGCAGC 61.423 66.667 0.00 0.00 0.00 5.25
382 383 2.742372 CCCGTTTCCCTCGTGCAG 60.742 66.667 0.00 0.00 0.00 4.41
383 384 4.323477 CCCCGTTTCCCTCGTGCA 62.323 66.667 0.00 0.00 0.00 4.57
385 386 2.264794 CTCCCCGTTTCCCTCGTG 59.735 66.667 0.00 0.00 0.00 4.35
387 388 4.814294 CGCTCCCCGTTTCCCTCG 62.814 72.222 0.00 0.00 0.00 4.63
388 389 2.646117 GATCGCTCCCCGTTTCCCTC 62.646 65.000 0.00 0.00 38.35 4.30
389 390 2.687566 ATCGCTCCCCGTTTCCCT 60.688 61.111 0.00 0.00 38.35 4.20
391 392 2.203029 GGATCGCTCCCCGTTTCC 60.203 66.667 0.00 0.00 35.28 3.13
392 393 2.585247 CGGATCGCTCCCCGTTTC 60.585 66.667 0.00 0.00 40.78 2.78
413 414 3.197790 CCAACAGCCGCGAGATGG 61.198 66.667 8.23 7.91 0.00 3.51
414 415 3.869272 GCCAACAGCCGCGAGATG 61.869 66.667 8.23 9.74 34.35 2.90
415 416 4.087892 AGCCAACAGCCGCGAGAT 62.088 61.111 8.23 0.00 45.47 2.75
417 418 2.906182 TATGAGCCAACAGCCGCGAG 62.906 60.000 8.23 0.00 45.47 5.03
418 419 2.514510 TTATGAGCCAACAGCCGCGA 62.515 55.000 8.23 0.00 45.47 5.87
420 421 1.026718 AGTTATGAGCCAACAGCCGC 61.027 55.000 0.00 0.00 45.47 6.53
421 422 1.009829 GAGTTATGAGCCAACAGCCG 58.990 55.000 0.00 0.00 45.47 5.52
423 424 1.399791 GCAGAGTTATGAGCCAACAGC 59.600 52.381 0.00 0.00 44.25 4.40
424 425 2.935201 GAGCAGAGTTATGAGCCAACAG 59.065 50.000 0.00 0.00 0.00 3.16
426 427 2.093235 AGGAGCAGAGTTATGAGCCAAC 60.093 50.000 0.00 0.00 0.00 3.77
428 429 1.759445 GAGGAGCAGAGTTATGAGCCA 59.241 52.381 0.00 0.00 0.00 4.75
440 441 0.668706 CGTTGGTGTCTGAGGAGCAG 60.669 60.000 0.00 0.00 46.31 4.24
441 442 1.367471 CGTTGGTGTCTGAGGAGCA 59.633 57.895 0.00 0.00 0.00 4.26
442 443 1.374758 CCGTTGGTGTCTGAGGAGC 60.375 63.158 0.00 0.00 0.00 4.70
443 444 0.244994 CTCCGTTGGTGTCTGAGGAG 59.755 60.000 0.00 0.00 39.18 3.69
444 445 0.178973 TCTCCGTTGGTGTCTGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
446 447 1.784525 GTTCTCCGTTGGTGTCTGAG 58.215 55.000 0.00 0.00 0.00 3.35
447 448 0.031585 CGTTCTCCGTTGGTGTCTGA 59.968 55.000 0.00 0.00 0.00 3.27
449 450 1.111116 TCCGTTCTCCGTTGGTGTCT 61.111 55.000 0.00 0.00 33.66 3.41
450 451 0.037605 ATCCGTTCTCCGTTGGTGTC 60.038 55.000 0.00 0.00 33.66 3.67
451 452 0.320421 CATCCGTTCTCCGTTGGTGT 60.320 55.000 0.00 0.00 33.66 4.16
452 453 1.635663 GCATCCGTTCTCCGTTGGTG 61.636 60.000 0.00 0.00 33.66 4.17
453 454 1.375523 GCATCCGTTCTCCGTTGGT 60.376 57.895 0.00 0.00 33.66 3.67
454 455 2.106683 GGCATCCGTTCTCCGTTGG 61.107 63.158 0.00 0.00 33.66 3.77
455 456 0.953471 TTGGCATCCGTTCTCCGTTG 60.953 55.000 0.00 0.00 33.66 4.10
457 458 1.079127 CTTGGCATCCGTTCTCCGT 60.079 57.895 0.00 0.00 33.66 4.69
458 459 0.673644 AACTTGGCATCCGTTCTCCG 60.674 55.000 0.00 0.00 0.00 4.63
459 460 1.468914 GAAACTTGGCATCCGTTCTCC 59.531 52.381 0.00 0.00 0.00 3.71
460 461 2.427506 AGAAACTTGGCATCCGTTCTC 58.572 47.619 0.00 0.00 0.00 2.87
461 462 2.568623 AGAAACTTGGCATCCGTTCT 57.431 45.000 0.00 0.00 0.00 3.01
462 463 2.552315 TGAAGAAACTTGGCATCCGTTC 59.448 45.455 0.00 0.00 0.00 3.95
463 464 2.582052 TGAAGAAACTTGGCATCCGTT 58.418 42.857 0.00 0.00 0.00 4.44
469 470 1.073125 TCGGGATGAAGAAACTTGGCA 59.927 47.619 0.00 0.00 0.00 4.92
471 472 1.740025 GCTCGGGATGAAGAAACTTGG 59.260 52.381 0.00 0.00 0.00 3.61
472 473 1.394917 CGCTCGGGATGAAGAAACTTG 59.605 52.381 0.00 0.00 0.00 3.16
473 474 1.726853 CGCTCGGGATGAAGAAACTT 58.273 50.000 0.00 0.00 0.00 2.66
474 475 0.741221 GCGCTCGGGATGAAGAAACT 60.741 55.000 0.00 0.00 0.00 2.66
475 476 1.716172 GCGCTCGGGATGAAGAAAC 59.284 57.895 0.00 0.00 0.00 2.78
476 477 1.809619 CGCGCTCGGGATGAAGAAA 60.810 57.895 5.56 0.00 0.00 2.52
477 478 2.016393 ATCGCGCTCGGGATGAAGAA 62.016 55.000 18.70 0.00 44.40 2.52
479 480 2.028190 ATCGCGCTCGGGATGAAG 59.972 61.111 18.70 0.00 44.40 3.02
483 484 3.983494 CCTCATCGCGCTCGGGAT 61.983 66.667 14.70 14.70 46.52 3.85
488 489 4.838152 TTGGGCCTCATCGCGCTC 62.838 66.667 5.56 0.00 41.93 5.03
491 492 4.812476 TCGTTGGGCCTCATCGCG 62.812 66.667 4.53 0.00 38.18 5.87
492 493 3.195698 GTCGTTGGGCCTCATCGC 61.196 66.667 4.53 9.80 38.18 4.58
496 497 1.302431 CACATGTCGTTGGGCCTCA 60.302 57.895 4.53 0.00 0.00 3.86
497 498 2.690778 GCACATGTCGTTGGGCCTC 61.691 63.158 4.53 0.00 40.24 4.70
498 499 2.672996 GCACATGTCGTTGGGCCT 60.673 61.111 4.53 0.00 40.24 5.19
500 501 4.759096 GCGCACATGTCGTTGGGC 62.759 66.667 0.30 11.85 42.75 5.36
501 502 4.444024 CGCGCACATGTCGTTGGG 62.444 66.667 8.75 6.64 0.00 4.12
515 516 4.406173 AGAGAGACCACACGCGCG 62.406 66.667 30.96 30.96 0.00 6.86
516 517 2.505118 GAGAGAGACCACACGCGC 60.505 66.667 5.73 0.00 0.00 6.86
518 519 0.109504 GAGTGAGAGAGACCACACGC 60.110 60.000 0.00 0.00 38.15 5.34
520 521 2.747446 GAGAGAGTGAGAGAGACCACAC 59.253 54.545 0.00 0.00 35.84 3.82
521 522 2.642311 AGAGAGAGTGAGAGAGACCACA 59.358 50.000 0.00 0.00 35.84 4.17
522 523 3.350219 AGAGAGAGTGAGAGAGACCAC 57.650 52.381 0.00 0.00 0.00 4.16
523 524 3.073798 ACAAGAGAGAGTGAGAGAGACCA 59.926 47.826 0.00 0.00 0.00 4.02
525 526 5.003804 AGAACAAGAGAGAGTGAGAGAGAC 58.996 45.833 0.00 0.00 0.00 3.36
534 535 2.235016 ACGCAGAGAACAAGAGAGAGT 58.765 47.619 0.00 0.00 0.00 3.24
540 541 2.029290 GGAACCTACGCAGAGAACAAGA 60.029 50.000 0.00 0.00 0.00 3.02
543 544 1.272490 CAGGAACCTACGCAGAGAACA 59.728 52.381 0.00 0.00 0.00 3.18
545 546 1.544691 GTCAGGAACCTACGCAGAGAA 59.455 52.381 0.00 0.00 0.00 2.87
553 554 4.828387 CCATCCTACTAGTCAGGAACCTAC 59.172 50.000 18.89 0.00 45.21 3.18
563 564 1.069358 GTGCCTGCCATCCTACTAGTC 59.931 57.143 0.00 0.00 0.00 2.59
564 565 1.123928 GTGCCTGCCATCCTACTAGT 58.876 55.000 0.00 0.00 0.00 2.57
565 566 0.032678 CGTGCCTGCCATCCTACTAG 59.967 60.000 0.00 0.00 0.00 2.57
569 570 0.686441 AGTACGTGCCTGCCATCCTA 60.686 55.000 0.00 0.00 0.00 2.94
570 571 1.961180 GAGTACGTGCCTGCCATCCT 61.961 60.000 0.00 0.00 0.00 3.24
572 573 1.521681 GGAGTACGTGCCTGCCATC 60.522 63.158 0.00 0.00 0.00 3.51
573 574 2.584608 GGAGTACGTGCCTGCCAT 59.415 61.111 0.00 0.00 0.00 4.40
574 575 3.702048 GGGAGTACGTGCCTGCCA 61.702 66.667 18.52 0.00 39.97 4.92
579 580 2.554074 GAACGGAGGGAGTACGTGCC 62.554 65.000 0.00 0.00 41.12 5.01
580 581 1.153881 GAACGGAGGGAGTACGTGC 60.154 63.158 0.00 0.00 41.12 5.34
581 582 1.246056 TGGAACGGAGGGAGTACGTG 61.246 60.000 0.00 0.00 41.12 4.49
582 583 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
583 584 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
585 586 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
586 587 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
587 588 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
589 590 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
591 592 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
592 593 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
593 594 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
595 596 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
596 597 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
597 598 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
598 599 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
605 606 9.561069 AACAATTAGTACAAAGTTGAGTCATCT 57.439 29.630 9.48 0.00 0.00 2.90
608 609 9.781834 CAAAACAATTAGTACAAAGTTGAGTCA 57.218 29.630 9.48 0.00 0.00 3.41
609 610 9.233232 CCAAAACAATTAGTACAAAGTTGAGTC 57.767 33.333 9.48 0.00 0.00 3.36
610 611 8.194769 CCCAAAACAATTAGTACAAAGTTGAGT 58.805 33.333 9.48 0.00 0.00 3.41
611 612 8.194769 ACCCAAAACAATTAGTACAAAGTTGAG 58.805 33.333 9.48 3.28 0.00 3.02
612 613 7.976734 CACCCAAAACAATTAGTACAAAGTTGA 59.023 33.333 9.48 0.00 0.00 3.18
614 615 7.762159 CACACCCAAAACAATTAGTACAAAGTT 59.238 33.333 0.00 0.00 0.00 2.66
615 616 7.093684 ACACACCCAAAACAATTAGTACAAAGT 60.094 33.333 0.00 0.00 0.00 2.66
616 617 7.221838 CACACACCCAAAACAATTAGTACAAAG 59.778 37.037 0.00 0.00 0.00 2.77
617 618 7.036220 CACACACCCAAAACAATTAGTACAAA 58.964 34.615 0.00 0.00 0.00 2.83
618 619 6.565234 CACACACCCAAAACAATTAGTACAA 58.435 36.000 0.00 0.00 0.00 2.41
619 620 5.450688 GCACACACCCAAAACAATTAGTACA 60.451 40.000 0.00 0.00 0.00 2.90
621 622 4.038162 GGCACACACCCAAAACAATTAGTA 59.962 41.667 0.00 0.00 0.00 1.82
622 623 3.181470 GGCACACACCCAAAACAATTAGT 60.181 43.478 0.00 0.00 0.00 2.24
623 624 3.069443 AGGCACACACCCAAAACAATTAG 59.931 43.478 0.00 0.00 0.00 1.73
624 625 3.034635 AGGCACACACCCAAAACAATTA 58.965 40.909 0.00 0.00 0.00 1.40
625 626 1.836802 AGGCACACACCCAAAACAATT 59.163 42.857 0.00 0.00 0.00 2.32
627 628 0.820871 GAGGCACACACCCAAAACAA 59.179 50.000 0.00 0.00 0.00 2.83
647 648 1.346395 AGTGAACGGTAATGGCAGACA 59.654 47.619 0.00 0.00 0.00 3.41
797 816 1.002544 GGTGAGGTCAAGCAGCTAGTT 59.997 52.381 0.00 0.00 30.88 2.24
820 843 4.335037 AGCTGCGTTAGTAAGTACTACTCC 59.665 45.833 0.00 0.00 40.21 3.85
821 844 5.264712 CAGCTGCGTTAGTAAGTACTACTC 58.735 45.833 0.00 0.00 40.21 2.59
823 846 4.349501 CCAGCTGCGTTAGTAAGTACTAC 58.650 47.826 8.66 0.00 38.43 2.73
824 847 3.181493 GCCAGCTGCGTTAGTAAGTACTA 60.181 47.826 8.66 0.00 37.73 1.82
868 3347 5.583854 AGTCTCAAAGCTCTATTCGTACGTA 59.416 40.000 16.05 6.02 0.00 3.57
913 3392 3.354089 AAAGGATTGTTGTTGCAGTCG 57.646 42.857 0.00 0.00 0.00 4.18
948 3427 9.404848 TCTGCAAGCTACTAGTAAAAGATAGTA 57.595 33.333 3.76 0.00 34.21 1.82
949 3428 8.192110 GTCTGCAAGCTACTAGTAAAAGATAGT 58.808 37.037 3.76 0.00 36.28 2.12
950 3429 8.410141 AGTCTGCAAGCTACTAGTAAAAGATAG 58.590 37.037 3.76 0.17 0.00 2.08
952 3431 7.038659 CAGTCTGCAAGCTACTAGTAAAAGAT 58.961 38.462 3.76 0.00 0.00 2.40
954 3433 5.578727 CCAGTCTGCAAGCTACTAGTAAAAG 59.421 44.000 3.76 0.00 0.00 2.27
955 3434 5.479306 CCAGTCTGCAAGCTACTAGTAAAA 58.521 41.667 3.76 0.00 0.00 1.52
959 3438 1.827969 CCCAGTCTGCAAGCTACTAGT 59.172 52.381 0.00 0.00 0.00 2.57
960 3439 1.137872 CCCCAGTCTGCAAGCTACTAG 59.862 57.143 0.00 0.00 0.00 2.57
963 3442 0.391793 GACCCCAGTCTGCAAGCTAC 60.392 60.000 0.00 0.00 40.10 3.58
970 3449 0.397254 TAGCTAGGACCCCAGTCTGC 60.397 60.000 0.00 0.00 43.05 4.26
1017 3920 1.480954 GTGTCCGTCCCATGTGTATCT 59.519 52.381 0.00 0.00 0.00 1.98
1018 3921 1.206132 TGTGTCCGTCCCATGTGTATC 59.794 52.381 0.00 0.00 0.00 2.24
1019 3922 1.271856 TGTGTCCGTCCCATGTGTAT 58.728 50.000 0.00 0.00 0.00 2.29
1053 4379 4.704833 GCTGTCTGCCGGCAGGAA 62.705 66.667 46.58 34.94 45.37 3.36
1068 4394 4.057428 GTGAGGTGCTCCGTCGCT 62.057 66.667 0.00 0.00 39.05 4.93
1113 4447 7.352739 CGGTGCAAGTTATTATGAAGGTTATC 58.647 38.462 0.00 0.00 0.00 1.75
1115 4449 5.587043 CCGGTGCAAGTTATTATGAAGGTTA 59.413 40.000 0.00 0.00 0.00 2.85
1117 4451 3.945285 CCGGTGCAAGTTATTATGAAGGT 59.055 43.478 0.00 0.00 0.00 3.50
1140 4474 1.073199 GGAGAAGTGTGTGGGGGTG 59.927 63.158 0.00 0.00 0.00 4.61
1151 4494 3.385111 CCGGTTCTTATAGCTGGAGAAGT 59.615 47.826 0.00 0.00 36.99 3.01
1176 4528 0.952984 GTGTCAGTTGGGCAGAGAGC 60.953 60.000 0.00 0.00 44.65 4.09
1180 4532 0.394192 CTCTGTGTCAGTTGGGCAGA 59.606 55.000 0.00 0.00 35.29 4.26
1194 4546 0.740149 CTCGATCTGCTCTGCTCTGT 59.260 55.000 0.00 0.00 0.00 3.41
1195 4547 0.595567 GCTCGATCTGCTCTGCTCTG 60.596 60.000 0.00 0.00 0.00 3.35
1196 4548 1.735360 GCTCGATCTGCTCTGCTCT 59.265 57.895 0.00 0.00 0.00 4.09
1197 4549 1.658102 CGCTCGATCTGCTCTGCTC 60.658 63.158 6.12 0.00 0.00 4.26
1198 4550 2.412525 CGCTCGATCTGCTCTGCT 59.587 61.111 6.12 0.00 0.00 4.24
1207 4559 3.554692 CAACGGTGGCGCTCGATC 61.555 66.667 20.64 0.00 0.00 3.69
1228 4580 1.329599 GTCGGTACCGCAATCCATTTC 59.670 52.381 29.64 5.49 39.59 2.17
1230 4582 0.808453 CGTCGGTACCGCAATCCATT 60.808 55.000 29.64 0.00 39.59 3.16
1231 4583 1.227147 CGTCGGTACCGCAATCCAT 60.227 57.895 29.64 0.00 39.59 3.41
1232 4584 1.875420 TTCGTCGGTACCGCAATCCA 61.875 55.000 29.64 8.36 39.59 3.41
1233 4585 1.153784 TTCGTCGGTACCGCAATCC 60.154 57.895 29.64 12.63 39.59 3.01
1234 4586 0.733566 TGTTCGTCGGTACCGCAATC 60.734 55.000 29.64 17.16 39.59 2.67
1235 4587 1.010419 GTGTTCGTCGGTACCGCAAT 61.010 55.000 29.64 0.00 39.59 3.56
1236 4588 1.661197 GTGTTCGTCGGTACCGCAA 60.661 57.895 29.64 17.85 39.59 4.85
1237 4589 2.050168 GTGTTCGTCGGTACCGCA 60.050 61.111 29.64 17.87 39.59 5.69
1238 4590 2.806621 GGTGTTCGTCGGTACCGC 60.807 66.667 29.64 21.84 39.59 5.68
1239 4591 1.007502 TTGGTGTTCGTCGGTACCG 60.008 57.895 28.66 28.66 41.35 4.02
1240 4592 0.249405 TGTTGGTGTTCGTCGGTACC 60.249 55.000 0.16 0.16 0.00 3.34
1241 4593 0.854705 GTGTTGGTGTTCGTCGGTAC 59.145 55.000 0.00 0.00 0.00 3.34
1242 4594 0.594540 CGTGTTGGTGTTCGTCGGTA 60.595 55.000 0.00 0.00 0.00 4.02
1243 4595 1.879430 CGTGTTGGTGTTCGTCGGT 60.879 57.895 0.00 0.00 0.00 4.69
1244 4596 2.591311 CCGTGTTGGTGTTCGTCGG 61.591 63.158 0.00 0.00 0.00 4.79
1245 4597 2.925352 CCGTGTTGGTGTTCGTCG 59.075 61.111 0.00 0.00 0.00 5.12
1248 4605 2.258013 ATGGCCGTGTTGGTGTTCG 61.258 57.895 0.00 0.00 41.21 3.95
1251 4608 2.597217 CCATGGCCGTGTTGGTGT 60.597 61.111 23.39 0.00 41.21 4.16
1276 4648 2.058675 CCACCTTCTTCCACTCCGT 58.941 57.895 0.00 0.00 0.00 4.69
1332 4704 0.893447 GTAGTCACGGTACCTTGGCT 59.107 55.000 26.55 26.55 34.54 4.75
1346 4718 1.680207 GATGTGGTAGGGACGGTAGTC 59.320 57.143 0.00 0.00 46.34 2.59
1347 4719 1.687368 GGATGTGGTAGGGACGGTAGT 60.687 57.143 0.00 0.00 0.00 2.73
1351 4723 0.106708 CATGGATGTGGTAGGGACGG 59.893 60.000 0.00 0.00 0.00 4.79
1353 4725 0.546122 TGCATGGATGTGGTAGGGAC 59.454 55.000 0.00 0.00 0.00 4.46
1354 4726 1.421268 GATGCATGGATGTGGTAGGGA 59.579 52.381 2.46 0.00 0.00 4.20
1355 4727 1.422781 AGATGCATGGATGTGGTAGGG 59.577 52.381 2.46 0.00 0.00 3.53
1356 4728 2.551721 GGAGATGCATGGATGTGGTAGG 60.552 54.545 2.46 0.00 0.00 3.18
1357 4729 2.105306 TGGAGATGCATGGATGTGGTAG 59.895 50.000 2.46 0.00 0.00 3.18
1358 4730 2.126057 TGGAGATGCATGGATGTGGTA 58.874 47.619 2.46 0.00 0.00 3.25
1359 4731 0.921166 TGGAGATGCATGGATGTGGT 59.079 50.000 2.46 0.00 0.00 4.16
1360 4732 1.886542 CATGGAGATGCATGGATGTGG 59.113 52.381 2.46 0.00 0.00 4.17
1361 4733 2.858745 TCATGGAGATGCATGGATGTG 58.141 47.619 2.46 0.00 0.00 3.21
1362 4734 3.808834 ATCATGGAGATGCATGGATGT 57.191 42.857 2.46 0.00 35.06 3.06
1367 4739 3.082548 GGAGGAATCATGGAGATGCATG 58.917 50.000 2.46 7.91 36.96 4.06
1368 4740 2.987437 AGGAGGAATCATGGAGATGCAT 59.013 45.455 0.00 0.00 36.96 3.96
1369 4741 2.371179 GAGGAGGAATCATGGAGATGCA 59.629 50.000 0.00 0.00 36.96 3.96
1370 4742 2.371179 TGAGGAGGAATCATGGAGATGC 59.629 50.000 0.00 0.00 36.96 3.91
1371 4743 4.102838 AGTTGAGGAGGAATCATGGAGATG 59.897 45.833 0.00 0.00 36.96 2.90
1372 4744 4.305524 AGTTGAGGAGGAATCATGGAGAT 58.694 43.478 0.00 0.00 39.09 2.75
1378 4750 2.697751 CGAGGAGTTGAGGAGGAATCAT 59.302 50.000 0.00 0.00 0.00 2.45
1388 4760 0.730834 CACTCACGCGAGGAGTTGAG 60.731 60.000 26.96 22.48 42.77 3.02
1421 4793 5.068215 TGAGGACTAGGGAGAGAATTAGG 57.932 47.826 0.00 0.00 0.00 2.69
1441 4813 3.342377 TCATGGGCGTATGTCTTTTGA 57.658 42.857 0.00 0.00 0.00 2.69
1442 4814 4.096231 TCATTCATGGGCGTATGTCTTTTG 59.904 41.667 0.00 0.00 0.00 2.44
1443 4815 4.269183 TCATTCATGGGCGTATGTCTTTT 58.731 39.130 0.00 0.00 0.00 2.27
1444 4816 3.884895 TCATTCATGGGCGTATGTCTTT 58.115 40.909 0.00 0.00 0.00 2.52
1445 4817 3.558931 TCATTCATGGGCGTATGTCTT 57.441 42.857 0.00 0.00 0.00 3.01
1446 4818 3.071457 TGATCATTCATGGGCGTATGTCT 59.929 43.478 0.00 0.00 0.00 3.41
1447 4819 3.187227 GTGATCATTCATGGGCGTATGTC 59.813 47.826 0.00 0.00 33.56 3.06
1458 4830 4.036027 GGTGCGATTGAAGTGATCATTCAT 59.964 41.667 16.29 9.85 37.99 2.57
1459 4831 3.374988 GGTGCGATTGAAGTGATCATTCA 59.625 43.478 13.31 13.31 37.99 2.57
1460 4832 3.374988 TGGTGCGATTGAAGTGATCATTC 59.625 43.478 0.00 4.92 38.03 2.67
1461 4833 3.127548 GTGGTGCGATTGAAGTGATCATT 59.872 43.478 0.00 0.00 38.03 2.57
1466 4838 0.107643 TGGTGGTGCGATTGAAGTGA 59.892 50.000 0.00 0.00 0.00 3.41
1477 4849 2.346766 TCATACATCCATGGTGGTGC 57.653 50.000 12.58 0.00 39.03 5.01
1495 4872 8.872134 ACCTAGCTAGGAGGAAATTAACTAATC 58.128 37.037 40.40 0.00 46.63 1.75
1500 4877 6.481434 TCACCTAGCTAGGAGGAAATTAAC 57.519 41.667 40.40 0.00 46.63 2.01
1514 4891 2.703007 GGATCATCTGGTTCACCTAGCT 59.297 50.000 0.00 0.00 36.82 3.32
1515 4892 2.435805 TGGATCATCTGGTTCACCTAGC 59.564 50.000 0.00 0.00 36.82 3.42
1516 4893 4.970860 ATGGATCATCTGGTTCACCTAG 57.029 45.455 0.00 0.00 36.82 3.02
1517 4894 5.715921 TCTATGGATCATCTGGTTCACCTA 58.284 41.667 0.00 0.00 36.82 3.08
1571 4948 2.751166 CTAGCAGTAGCACACCAACT 57.249 50.000 0.00 0.00 45.49 3.16
1598 4975 3.569194 TTAACCAACCACTCTCTGCAA 57.431 42.857 0.00 0.00 0.00 4.08
1599 4976 3.788227 ATTAACCAACCACTCTCTGCA 57.212 42.857 0.00 0.00 0.00 4.41
1622 4999 1.081906 GCGTACGTGTCCGACAAGA 60.082 57.895 19.60 2.68 37.88 3.02
1673 7655 0.951525 TGATAAACCACCCGTGCGTG 60.952 55.000 0.00 0.00 0.00 5.34
1674 7656 0.672401 CTGATAAACCACCCGTGCGT 60.672 55.000 0.00 0.00 0.00 5.24
1675 7657 0.672401 ACTGATAAACCACCCGTGCG 60.672 55.000 0.00 0.00 0.00 5.34
1676 7658 1.084289 GACTGATAAACCACCCGTGC 58.916 55.000 0.00 0.00 0.00 5.34
1677 7659 1.278127 AGGACTGATAAACCACCCGTG 59.722 52.381 0.00 0.00 0.00 4.94
1688 7670 4.401519 CGGGACTAACAGAAAGGACTGATA 59.598 45.833 0.00 0.00 40.63 2.15
1700 7682 1.134560 GGTAGAGTGCGGGACTAACAG 59.865 57.143 0.88 0.00 33.83 3.16
1704 7686 1.561076 TGTAGGTAGAGTGCGGGACTA 59.439 52.381 0.88 0.00 33.83 2.59
1715 7704 4.021981 CGGAGATGCATCAATGTAGGTAGA 60.022 45.833 27.81 0.00 0.00 2.59
1723 7712 5.678132 TTTATCACGGAGATGCATCAATG 57.322 39.130 27.81 18.44 37.57 2.82
1786 7782 2.103094 CTGGGTCATCATCCACGTGTAT 59.897 50.000 15.65 0.00 0.00 2.29
1827 8118 2.334977 TCCTCCTCCTACAAACAAGCA 58.665 47.619 0.00 0.00 0.00 3.91
1971 8262 1.446099 GATCTCGTTGCGCACCTCA 60.446 57.895 11.12 0.00 0.00 3.86
1981 8272 1.673033 CCTGTCCTTTGCGATCTCGTT 60.673 52.381 1.14 0.00 42.22 3.85
2076 8367 0.684535 TGAACTCGCCAAGGTCATGA 59.315 50.000 0.00 0.00 46.99 3.07
2304 8612 4.807039 CGCCACGTAACCCCGGAG 62.807 72.222 0.73 0.00 0.00 4.63
2381 8689 1.954733 GCCATGAACATGTAGGGCACA 60.955 52.381 17.29 4.36 42.69 4.57
2402 8710 1.212935 GGGTACACCATCTTCCATGCT 59.787 52.381 0.00 0.00 39.85 3.79
2466 8774 3.054361 AGCGTGGATTTGAGGTCCTTATT 60.054 43.478 0.00 0.00 36.68 1.40
2532 8840 1.545582 GCCCTAAAGCTTCAACATGCA 59.454 47.619 0.00 0.00 0.00 3.96
2536 8844 3.408634 GTGTAGCCCTAAAGCTTCAACA 58.591 45.455 0.00 0.00 41.41 3.33
2557 8865 5.009631 TGGATTTGGACTACAGTGAATTGG 58.990 41.667 0.00 0.00 0.00 3.16
2595 9051 5.663106 AGTATGTCAGGTAGTGATCACCATT 59.337 40.000 22.21 6.78 37.56 3.16
2763 9223 6.981559 TCGATTCGTTTGTATCATGGTCATTA 59.018 34.615 5.89 0.00 0.00 1.90
2764 9224 5.815222 TCGATTCGTTTGTATCATGGTCATT 59.185 36.000 5.89 0.00 0.00 2.57
2766 9226 4.749976 TCGATTCGTTTGTATCATGGTCA 58.250 39.130 5.89 0.00 0.00 4.02
2793 9254 4.034626 GTGTGTGTGTGTTATGTTAGTGCA 59.965 41.667 0.00 0.00 0.00 4.57
2881 9370 6.215845 TCATGTGATCCGTATTGTACATCTG 58.784 40.000 0.00 0.00 0.00 2.90
2896 9385 2.349886 GCTCCGTCAACTTCATGTGATC 59.650 50.000 0.00 0.00 0.00 2.92
2949 9438 2.143122 GTTCATCGGTGTTCAGCTTCA 58.857 47.619 0.00 0.00 0.00 3.02
2988 9477 3.118775 CGTGTCCTACCCATCTTGATGAA 60.119 47.826 11.76 0.00 0.00 2.57
3010 9499 1.147153 GGGCAGTAGATGTGCTCCC 59.853 63.158 0.00 1.23 40.97 4.30
3021 9518 1.507140 ATCCTTTGGATCGGGCAGTA 58.493 50.000 0.00 0.00 38.09 2.74
3059 9556 1.000955 TGCTCTCTGTTCTTCGGGTTC 59.999 52.381 0.00 0.00 0.00 3.62
3110 9607 2.447572 TGGAGGTGTCTGTGGGCA 60.448 61.111 0.00 0.00 0.00 5.36
3117 9614 2.574955 GCCGACAGTGGAGGTGTCT 61.575 63.158 7.78 0.00 41.91 3.41
3145 9642 4.345547 GTGGGGGTAAAATTCTTGTTTGGA 59.654 41.667 0.00 0.00 0.00 3.53
3166 9663 3.378742 ACTCATAGACAGAGCGGTTAGTG 59.621 47.826 0.00 0.00 36.58 2.74
3167 9664 3.622630 ACTCATAGACAGAGCGGTTAGT 58.377 45.455 0.00 0.00 36.58 2.24
3169 9666 4.135306 CCTACTCATAGACAGAGCGGTTA 58.865 47.826 0.00 0.00 36.58 2.85
3171 9668 2.577700 CCTACTCATAGACAGAGCGGT 58.422 52.381 0.00 0.00 36.58 5.68
3180 9677 2.298610 CGACTGCACCCTACTCATAGA 58.701 52.381 0.00 0.00 0.00 1.98
3183 9680 0.614979 ACCGACTGCACCCTACTCAT 60.615 55.000 0.00 0.00 0.00 2.90
3238 9735 2.675317 GCGGCCTGGTAGCTAGAATATG 60.675 54.545 0.00 0.00 0.00 1.78
3239 9736 1.550976 GCGGCCTGGTAGCTAGAATAT 59.449 52.381 0.00 0.00 0.00 1.28
3302 9799 1.900981 TTGTGGTGTTCATGGGCGG 60.901 57.895 0.00 0.00 0.00 6.13
3309 9806 2.490115 GTGGTGAAAGTTGTGGTGTTCA 59.510 45.455 0.00 0.00 0.00 3.18
3336 9833 3.505790 ATGGTTGTTGGGGCAGCGA 62.506 57.895 0.00 0.00 0.00 4.93
3340 9837 1.532794 GACCATGGTTGTTGGGGCA 60.533 57.895 20.85 0.00 38.64 5.36
3347 9844 0.112412 GGAGTTGGGACCATGGTTGT 59.888 55.000 20.85 0.00 0.00 3.32
3357 9854 1.388217 AGGGGGTTTGGAGTTGGGA 60.388 57.895 0.00 0.00 0.00 4.37
3361 10021 2.434774 GCGAGGGGGTTTGGAGTT 59.565 61.111 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.