Multiple sequence alignment - TraesCS5D01G538500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G538500 chr5D 100.000 3599 0 0 1 3599 550581007 550577409 0.000000e+00 6647.0
1 TraesCS5D01G538500 chr5D 84.250 400 60 3 2238 2635 550611530 550611132 1.570000e-103 387.0
2 TraesCS5D01G538500 chr5D 78.983 295 32 16 920 1210 550638895 550638627 1.330000e-39 174.0
3 TraesCS5D01G538500 chr5D 78.378 222 34 9 914 1129 550612536 550612323 8.110000e-27 132.0
4 TraesCS5D01G538500 chr5D 87.059 85 4 4 1052 1129 501116501 501116585 4.950000e-14 89.8
5 TraesCS5D01G538500 chr4A 91.608 989 40 14 1268 2239 617042702 617043664 0.000000e+00 1327.0
6 TraesCS5D01G538500 chr4A 87.216 837 42 30 368 1193 617041890 617042672 0.000000e+00 893.0
7 TraesCS5D01G538500 chr4A 86.194 804 53 16 2269 3020 617047092 617047889 0.000000e+00 817.0
8 TraesCS5D01G538500 chr4A 85.000 400 57 3 2238 2635 617002076 617002474 1.560000e-108 403.0
9 TraesCS5D01G538500 chr4A 92.558 215 8 4 53 267 617041376 617041582 5.840000e-78 302.0
10 TraesCS5D01G538500 chr4A 95.172 145 6 1 3154 3297 617048015 617048159 1.010000e-55 228.0
11 TraesCS5D01G538500 chr4A 92.254 142 10 1 3458 3598 617048169 617048310 2.190000e-47 200.0
12 TraesCS5D01G538500 chr4A 88.421 95 8 1 1035 1129 617001191 617001282 1.060000e-20 111.0
13 TraesCS5D01G538500 chr4A 89.157 83 9 0 3028 3110 617047936 617048018 1.770000e-18 104.0
14 TraesCS5D01G538500 chr4A 92.982 57 3 1 3120 3176 669084518 669084573 8.280000e-12 82.4
15 TraesCS5D01G538500 chr4A 100.000 28 0 0 22 49 93890511 93890484 6.000000e-03 52.8
16 TraesCS5D01G538500 chr4A 100.000 28 0 0 22 49 617280337 617280310 6.000000e-03 52.8
17 TraesCS5D01G538500 chr5B 88.330 1054 105 9 1733 2780 703097646 703096605 0.000000e+00 1249.0
18 TraesCS5D01G538500 chr5B 86.327 490 31 18 695 1179 703098536 703098078 5.360000e-138 501.0
19 TraesCS5D01G538500 chr5B 84.750 400 58 3 2238 2635 703172921 703172523 7.240000e-107 398.0
20 TraesCS5D01G538500 chr5B 87.931 232 12 3 118 336 703098953 703098725 3.560000e-65 259.0
21 TraesCS5D01G538500 chr5B 80.831 313 40 13 907 1210 703231652 703231351 1.010000e-55 228.0
22 TraesCS5D01G538500 chr5B 90.062 161 13 3 3154 3311 355610020 355610180 4.710000e-49 206.0
23 TraesCS5D01G538500 chr5B 87.654 162 16 3 3154 3311 447002255 447002094 6.140000e-43 185.0
24 TraesCS5D01G538500 chr5B 87.273 165 10 4 1271 1427 703098031 703097870 1.030000e-40 178.0
25 TraesCS5D01G538500 chr5B 86.207 145 9 2 334 478 703098672 703098539 2.900000e-31 147.0
26 TraesCS5D01G538500 chr5B 95.181 83 4 0 3028 3110 317297422 317297340 8.110000e-27 132.0
27 TraesCS5D01G538500 chr5B 90.805 87 8 0 3024 3110 330750216 330750302 2.270000e-22 117.0
28 TraesCS5D01G538500 chr5B 82.883 111 16 1 1021 1131 703169667 703169560 2.960000e-16 97.1
29 TraesCS5D01G538500 chr5B 91.071 56 5 0 2782 2837 703096538 703096483 3.850000e-10 76.8
30 TraesCS5D01G538500 chr5B 90.698 43 4 0 1385 1427 703169374 703169332 1.400000e-04 58.4
31 TraesCS5D01G538500 chr5B 90.476 42 4 0 2173 2214 703196796 703196755 5.020000e-04 56.5
32 TraesCS5D01G538500 chr5A 88.050 159 17 2 3154 3311 121408515 121408358 1.710000e-43 187.0
33 TraesCS5D01G538500 chr5A 93.258 89 6 0 3022 3110 680608791 680608703 8.110000e-27 132.0
34 TraesCS5D01G538500 chr5A 89.474 57 6 0 3120 3176 513846638 513846582 4.980000e-09 73.1
35 TraesCS5D01G538500 chr6B 87.654 162 16 3 3154 3311 57233536 57233697 6.140000e-43 185.0
36 TraesCS5D01G538500 chr6B 100.000 50 0 0 3109 3158 471182849 471182898 3.830000e-15 93.5
37 TraesCS5D01G538500 chr6D 87.342 158 18 2 3156 3311 49450584 49450741 2.850000e-41 180.0
38 TraesCS5D01G538500 chr4D 86.957 161 17 4 3154 3312 431198354 431198512 1.030000e-40 178.0
39 TraesCS5D01G538500 chr4D 86.420 81 11 0 3024 3104 390281615 390281695 4.950000e-14 89.8
40 TraesCS5D01G538500 chr4D 94.595 37 2 0 22 58 45710292 45710256 1.400000e-04 58.4
41 TraesCS5D01G538500 chr3D 86.709 158 19 2 3156 3311 21715137 21715294 1.330000e-39 174.0
42 TraesCS5D01G538500 chr3D 91.304 92 7 1 3028 3119 23235453 23235543 1.360000e-24 124.0
43 TraesCS5D01G538500 chr3D 88.750 80 9 0 3028 3107 352370881 352370802 8.220000e-17 99.0
44 TraesCS5D01G538500 chr7B 86.164 159 21 1 3154 3311 718362402 718362560 1.720000e-38 171.0
45 TraesCS5D01G538500 chr7B 90.476 84 8 0 3027 3110 718362322 718362405 1.060000e-20 111.0
46 TraesCS5D01G538500 chr1B 82.738 168 26 2 3145 3311 20864203 20864368 2.900000e-31 147.0
47 TraesCS5D01G538500 chr1B 92.771 83 6 0 3028 3110 323935890 323935972 1.760000e-23 121.0
48 TraesCS5D01G538500 chr2B 91.566 83 7 0 3028 3110 750016755 750016837 8.170000e-22 115.0
49 TraesCS5D01G538500 chr2B 86.957 69 5 3 3120 3185 314785737 314785670 1.390000e-09 75.0
50 TraesCS5D01G538500 chr1D 95.161 62 3 0 3028 3089 337794274 337794213 8.220000e-17 99.0
51 TraesCS5D01G538500 chr1D 90.000 60 4 2 3120 3177 258350776 258350717 3.850000e-10 76.8
52 TraesCS5D01G538500 chr1D 86.301 73 5 5 3120 3189 265677419 265677349 1.390000e-09 75.0
53 TraesCS5D01G538500 chr2D 92.857 56 3 1 3120 3174 610294494 610294549 2.980000e-11 80.5
54 TraesCS5D01G538500 chr7D 88.060 67 4 3 3092 3157 58831637 58831700 3.850000e-10 76.8
55 TraesCS5D01G538500 chr7A 100.000 28 0 0 22 49 518506535 518506562 6.000000e-03 52.8
56 TraesCS5D01G538500 chr7A 96.875 32 0 1 22 52 720924264 720924295 6.000000e-03 52.8
57 TraesCS5D01G538500 chr1A 100.000 28 0 0 22 49 238082883 238082910 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G538500 chr5D 550577409 550581007 3598 True 6647.0 6647 100.000000 1 3599 1 chr5D.!!$R1 3598
1 TraesCS5D01G538500 chr5D 550611132 550612536 1404 True 259.5 387 81.314000 914 2635 2 chr5D.!!$R3 1721
2 TraesCS5D01G538500 chr4A 617041376 617048310 6934 False 553.0 1327 90.594143 53 3598 7 chr4A.!!$F3 3545
3 TraesCS5D01G538500 chr4A 617001191 617002474 1283 False 257.0 403 86.710500 1035 2635 2 chr4A.!!$F2 1600
4 TraesCS5D01G538500 chr5B 703096483 703098953 2470 True 401.8 1249 87.856500 118 2837 6 chr5B.!!$R5 2719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.031585 CGAGGGAAACGATGGCGATA 59.968 55.0 0.00 0.0 41.64 2.92 F
601 845 0.037697 TATTGCAGACGGACGTGCTT 60.038 50.0 5.27 0.0 40.54 3.91 F
1230 1490 0.035739 TGGTCCAACGCCCTAAACTC 59.964 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1217 1477 0.037605 CCTGTCGAGTTTAGGGCGTT 60.038 55.0 0.00 0.0 0.00 4.84 R
2573 6428 0.096976 CTTGAGTTTGCCGCCGTATG 59.903 55.0 0.00 0.0 0.00 2.39 R
3134 7131 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.595691 CTCCACAGCCTAATAGCGG 57.404 57.895 0.00 0.00 38.01 5.52
19 20 1.040646 CTCCACAGCCTAATAGCGGA 58.959 55.000 0.00 0.00 38.01 5.54
20 21 0.750850 TCCACAGCCTAATAGCGGAC 59.249 55.000 0.00 0.00 38.01 4.79
21 22 0.753262 CCACAGCCTAATAGCGGACT 59.247 55.000 0.00 0.00 38.01 3.85
22 23 1.139058 CCACAGCCTAATAGCGGACTT 59.861 52.381 0.00 0.00 38.01 3.01
23 24 2.420129 CCACAGCCTAATAGCGGACTTT 60.420 50.000 0.00 0.00 38.01 2.66
24 25 2.609459 CACAGCCTAATAGCGGACTTTG 59.391 50.000 0.00 0.00 38.01 2.77
25 26 2.500098 ACAGCCTAATAGCGGACTTTGA 59.500 45.455 0.00 0.00 38.01 2.69
26 27 3.126831 CAGCCTAATAGCGGACTTTGAG 58.873 50.000 0.00 0.00 38.01 3.02
27 28 2.766828 AGCCTAATAGCGGACTTTGAGT 59.233 45.455 0.00 0.00 38.01 3.41
28 29 3.197983 AGCCTAATAGCGGACTTTGAGTT 59.802 43.478 0.00 0.00 38.01 3.01
29 30 3.939592 GCCTAATAGCGGACTTTGAGTTT 59.060 43.478 0.00 0.00 0.00 2.66
30 31 4.201822 GCCTAATAGCGGACTTTGAGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
31 32 3.831715 AATAGCGGACTTTGAGTTTGC 57.168 42.857 0.00 0.00 0.00 3.68
32 33 2.543777 TAGCGGACTTTGAGTTTGCT 57.456 45.000 11.11 11.11 40.47 3.91
33 34 2.543777 AGCGGACTTTGAGTTTGCTA 57.456 45.000 6.31 0.00 37.26 3.49
34 35 2.846193 AGCGGACTTTGAGTTTGCTAA 58.154 42.857 6.31 0.00 37.26 3.09
35 36 2.548480 AGCGGACTTTGAGTTTGCTAAC 59.452 45.455 2.56 2.56 37.26 2.34
36 37 2.350484 GCGGACTTTGAGTTTGCTAACC 60.350 50.000 7.43 0.58 34.71 2.85
37 38 2.875933 CGGACTTTGAGTTTGCTAACCA 59.124 45.455 7.43 3.14 34.71 3.67
38 39 3.303791 CGGACTTTGAGTTTGCTAACCAC 60.304 47.826 7.43 3.54 34.71 4.16
39 40 3.630312 GGACTTTGAGTTTGCTAACCACA 59.370 43.478 7.43 6.00 34.71 4.17
40 41 4.278419 GGACTTTGAGTTTGCTAACCACAT 59.722 41.667 7.43 0.00 34.71 3.21
41 42 5.186996 ACTTTGAGTTTGCTAACCACATG 57.813 39.130 7.43 0.00 34.71 3.21
42 43 4.644685 ACTTTGAGTTTGCTAACCACATGT 59.355 37.500 7.43 0.00 34.71 3.21
43 44 4.829064 TTGAGTTTGCTAACCACATGTC 57.171 40.909 7.43 0.00 34.71 3.06
44 45 3.146066 TGAGTTTGCTAACCACATGTCC 58.854 45.455 7.43 0.00 34.71 4.02
45 46 2.488153 GAGTTTGCTAACCACATGTCCC 59.512 50.000 7.43 0.00 34.71 4.46
46 47 2.158534 AGTTTGCTAACCACATGTCCCA 60.159 45.455 7.43 0.00 34.71 4.37
47 48 2.825532 GTTTGCTAACCACATGTCCCAT 59.174 45.455 0.00 0.00 0.00 4.00
48 49 2.127271 TGCTAACCACATGTCCCATG 57.873 50.000 0.00 2.77 0.00 3.66
49 50 0.740737 GCTAACCACATGTCCCATGC 59.259 55.000 0.00 0.00 0.00 4.06
50 51 1.016627 CTAACCACATGTCCCATGCG 58.983 55.000 0.00 0.00 0.00 4.73
51 52 0.326595 TAACCACATGTCCCATGCGT 59.673 50.000 0.00 0.00 0.00 5.24
216 217 1.548973 AAACGAACGAGCTGCACGAG 61.549 55.000 25.27 16.88 34.70 4.18
232 233 0.031585 CGAGGGAAACGATGGCGATA 59.968 55.000 0.00 0.00 41.64 2.92
322 335 2.093783 CCTCAACCATTAACGTTCTCGC 59.906 50.000 2.82 0.00 41.18 5.03
328 341 1.061131 CATTAACGTTCTCGCCAGCAG 59.939 52.381 2.82 0.00 41.18 4.24
329 342 1.289109 TTAACGTTCTCGCCAGCAGC 61.289 55.000 2.82 0.00 41.18 5.25
330 343 2.428960 TAACGTTCTCGCCAGCAGCA 62.429 55.000 2.82 0.00 44.04 4.41
331 344 3.485431 CGTTCTCGCCAGCAGCAG 61.485 66.667 0.00 0.00 44.04 4.24
332 345 2.358003 GTTCTCGCCAGCAGCAGT 60.358 61.111 0.00 0.00 44.04 4.40
436 675 1.943293 CGGTTTTGGGTGTACGTGG 59.057 57.895 0.00 0.00 0.00 4.94
437 676 1.655885 GGTTTTGGGTGTACGTGGC 59.344 57.895 0.00 0.00 0.00 5.01
481 720 4.495422 ACCGTTCACTGTTGATAGCTAAG 58.505 43.478 0.00 0.00 0.00 2.18
499 738 1.928868 AGCAATTCCCAAGTTCCAGG 58.071 50.000 0.00 0.00 0.00 4.45
560 799 3.242969 TGCGAGAGATGGATGTTACGTAC 60.243 47.826 0.00 0.00 0.00 3.67
561 800 3.003482 GCGAGAGATGGATGTTACGTACT 59.997 47.826 0.00 0.00 0.00 2.73
562 801 4.774586 CGAGAGATGGATGTTACGTACTC 58.225 47.826 0.00 0.00 0.00 2.59
598 842 2.554806 TAGTATTGCAGACGGACGTG 57.445 50.000 0.53 0.00 0.00 4.49
599 843 0.736325 AGTATTGCAGACGGACGTGC 60.736 55.000 0.53 0.00 40.29 5.34
600 844 0.736325 GTATTGCAGACGGACGTGCT 60.736 55.000 5.27 0.00 40.54 4.40
601 845 0.037697 TATTGCAGACGGACGTGCTT 60.038 50.000 5.27 0.00 40.54 3.91
602 846 1.568612 ATTGCAGACGGACGTGCTTG 61.569 55.000 5.27 2.17 40.54 4.01
603 847 2.661866 GCAGACGGACGTGCTTGT 60.662 61.111 5.27 0.00 36.71 3.16
604 848 2.943345 GCAGACGGACGTGCTTGTG 61.943 63.158 6.34 6.34 36.71 3.33
605 849 1.299850 CAGACGGACGTGCTTGTGA 60.300 57.895 4.75 0.00 0.00 3.58
606 850 1.007271 AGACGGACGTGCTTGTGAG 60.007 57.895 5.27 0.00 0.00 3.51
607 851 1.299926 GACGGACGTGCTTGTGAGT 60.300 57.895 5.27 0.00 0.00 3.41
608 852 0.874607 GACGGACGTGCTTGTGAGTT 60.875 55.000 5.27 0.00 0.00 3.01
609 853 0.874607 ACGGACGTGCTTGTGAGTTC 60.875 55.000 5.27 0.00 0.00 3.01
610 854 0.597637 CGGACGTGCTTGTGAGTTCT 60.598 55.000 5.27 0.00 0.00 3.01
611 855 0.861837 GGACGTGCTTGTGAGTTCTG 59.138 55.000 0.00 0.00 0.00 3.02
612 856 1.538204 GGACGTGCTTGTGAGTTCTGA 60.538 52.381 0.00 0.00 0.00 3.27
613 857 2.201732 GACGTGCTTGTGAGTTCTGAA 58.798 47.619 0.00 0.00 0.00 3.02
614 858 2.205074 ACGTGCTTGTGAGTTCTGAAG 58.795 47.619 0.00 0.00 0.00 3.02
615 859 1.070309 CGTGCTTGTGAGTTCTGAAGC 60.070 52.381 0.00 0.00 41.03 3.86
616 860 2.216898 GTGCTTGTGAGTTCTGAAGCT 58.783 47.619 0.00 0.00 41.19 3.74
617 861 2.032204 GTGCTTGTGAGTTCTGAAGCTG 60.032 50.000 0.00 0.00 41.19 4.24
618 862 2.158914 TGCTTGTGAGTTCTGAAGCTGA 60.159 45.455 0.00 0.00 41.19 4.26
619 863 2.874701 GCTTGTGAGTTCTGAAGCTGAA 59.125 45.455 0.00 0.00 38.23 3.02
620 864 3.313526 GCTTGTGAGTTCTGAAGCTGAAA 59.686 43.478 0.00 0.00 38.23 2.69
621 865 4.787882 GCTTGTGAGTTCTGAAGCTGAAAC 60.788 45.833 0.00 0.00 38.23 2.78
648 892 7.181125 ACCAATCTTGTTCTTAGATGGAGTAGT 59.819 37.037 3.16 0.00 32.82 2.73
652 896 6.948886 TCTTGTTCTTAGATGGAGTAGTCAGT 59.051 38.462 0.00 0.00 0.00 3.41
672 916 6.802834 GTCAGTTAGTAGTGCAGAAAGTACTC 59.197 42.308 0.00 0.00 42.56 2.59
673 917 6.715718 TCAGTTAGTAGTGCAGAAAGTACTCT 59.284 38.462 0.00 0.00 42.56 3.24
712 956 4.464947 GGAGGAGATTTGGGTCCTAATTG 58.535 47.826 0.00 0.00 43.65 2.32
756 1000 0.605319 AACGTGTGGCTATGTGGGTG 60.605 55.000 0.00 0.00 0.00 4.61
757 1001 1.003839 CGTGTGGCTATGTGGGTGT 60.004 57.895 0.00 0.00 0.00 4.16
758 1002 1.298157 CGTGTGGCTATGTGGGTGTG 61.298 60.000 0.00 0.00 0.00 3.82
759 1003 1.303236 TGTGGCTATGTGGGTGTGC 60.303 57.895 0.00 0.00 0.00 4.57
760 1004 1.303236 GTGGCTATGTGGGTGTGCA 60.303 57.895 0.00 0.00 0.00 4.57
761 1005 1.303236 TGGCTATGTGGGTGTGCAC 60.303 57.895 10.75 10.75 0.00 4.57
762 1006 1.002134 GGCTATGTGGGTGTGCACT 60.002 57.895 19.41 0.00 0.00 4.40
796 1040 1.001393 TCCATTTCCGTTCCTGCCC 60.001 57.895 0.00 0.00 0.00 5.36
837 1081 2.256764 CTCACTCACGCTCACGCT 59.743 61.111 0.00 0.00 45.53 5.07
838 1082 1.799519 CTCACTCACGCTCACGCTC 60.800 63.158 0.00 0.00 45.53 5.03
839 1083 2.050077 CACTCACGCTCACGCTCA 60.050 61.111 0.00 0.00 45.53 4.26
840 1084 2.049985 ACTCACGCTCACGCTCAC 60.050 61.111 0.00 0.00 45.53 3.51
841 1085 2.256764 CTCACGCTCACGCTCACT 59.743 61.111 0.00 0.00 45.53 3.41
842 1086 1.799519 CTCACGCTCACGCTCACTC 60.800 63.158 0.00 0.00 45.53 3.51
862 1106 4.217550 ACTCTCGAGCCTATGATTTAGAGC 59.782 45.833 7.81 0.00 34.02 4.09
909 1153 2.360350 GCAGCAGCAACCCAGCTA 60.360 61.111 0.00 0.00 44.54 3.32
964 1213 1.375523 CCTCTACCGGCCAACACAC 60.376 63.158 0.00 0.00 0.00 3.82
991 1245 1.224075 CAGATCGAGCGCATCCATTT 58.776 50.000 11.47 0.00 0.00 2.32
996 1250 1.434622 CGAGCGCATCCATTTCAGCT 61.435 55.000 11.47 0.00 37.69 4.24
1006 1266 3.559069 TCCATTTCAGCTGGAATGGATC 58.441 45.455 45.59 0.00 39.83 3.36
1007 1267 3.053470 TCCATTTCAGCTGGAATGGATCA 60.053 43.478 45.59 32.79 39.83 2.92
1008 1268 3.895656 CCATTTCAGCTGGAATGGATCAT 59.104 43.478 45.26 14.32 36.82 2.45
1009 1269 4.022242 CCATTTCAGCTGGAATGGATCATC 60.022 45.833 45.26 0.00 36.82 2.92
1011 1271 0.873054 CAGCTGGAATGGATCATCGC 59.127 55.000 5.57 0.00 0.00 4.58
1012 1272 0.602106 AGCTGGAATGGATCATCGCG 60.602 55.000 0.00 0.00 0.00 5.87
1013 1273 0.882042 GCTGGAATGGATCATCGCGT 60.882 55.000 5.77 0.00 0.00 6.01
1014 1274 1.586422 CTGGAATGGATCATCGCGTT 58.414 50.000 5.77 0.00 0.00 4.84
1015 1275 2.754472 CTGGAATGGATCATCGCGTTA 58.246 47.619 5.77 0.00 0.00 3.18
1016 1276 2.476619 CTGGAATGGATCATCGCGTTAC 59.523 50.000 5.77 0.00 0.00 2.50
1017 1277 1.798813 GGAATGGATCATCGCGTTACC 59.201 52.381 5.77 4.86 0.00 2.85
1018 1278 1.455786 GAATGGATCATCGCGTTACCG 59.544 52.381 5.77 0.00 37.07 4.02
1019 1279 0.671796 ATGGATCATCGCGTTACCGA 59.328 50.000 5.77 0.00 41.98 4.69
1028 1288 0.869880 CGCGTTACCGATGATGAGCA 60.870 55.000 0.00 0.00 35.63 4.26
1029 1289 1.502231 GCGTTACCGATGATGAGCAT 58.498 50.000 0.00 0.00 40.77 3.79
1129 1389 3.015145 ACCCCGCTGCCAAGGTAT 61.015 61.111 1.43 0.00 0.00 2.73
1164 1424 3.430098 GCATATCCATCCATCGTCTCCTC 60.430 52.174 0.00 0.00 0.00 3.71
1165 1425 1.638529 ATCCATCCATCGTCTCCTCC 58.361 55.000 0.00 0.00 0.00 4.30
1166 1426 0.558220 TCCATCCATCGTCTCCTCCT 59.442 55.000 0.00 0.00 0.00 3.69
1187 1447 1.883926 TGATTCCTCGTCAACTCGTCA 59.116 47.619 0.00 0.00 0.00 4.35
1188 1448 2.095212 TGATTCCTCGTCAACTCGTCAG 60.095 50.000 0.00 0.00 0.00 3.51
1189 1449 0.039437 TTCCTCGTCAACTCGTCAGC 60.039 55.000 0.00 0.00 0.00 4.26
1197 1457 1.901948 AACTCGTCAGCGTGGGAGA 60.902 57.895 5.16 0.00 39.49 3.71
1201 1461 0.738975 TCGTCAGCGTGGGAGAATAG 59.261 55.000 0.00 0.00 39.49 1.73
1204 1464 2.605823 CGTCAGCGTGGGAGAATAGATC 60.606 54.545 0.00 0.00 0.00 2.75
1205 1465 2.362397 GTCAGCGTGGGAGAATAGATCA 59.638 50.000 0.00 0.00 0.00 2.92
1206 1466 2.362397 TCAGCGTGGGAGAATAGATCAC 59.638 50.000 0.00 0.00 0.00 3.06
1207 1467 2.363680 CAGCGTGGGAGAATAGATCACT 59.636 50.000 0.00 0.00 0.00 3.41
1208 1468 2.625790 AGCGTGGGAGAATAGATCACTC 59.374 50.000 0.00 0.00 0.00 3.51
1209 1469 2.288518 GCGTGGGAGAATAGATCACTCC 60.289 54.545 15.21 15.21 46.44 3.85
1210 1470 3.226777 CGTGGGAGAATAGATCACTCCT 58.773 50.000 19.69 3.69 46.39 3.69
1211 1471 3.639094 CGTGGGAGAATAGATCACTCCTT 59.361 47.826 19.69 0.00 46.39 3.36
1212 1472 4.500545 CGTGGGAGAATAGATCACTCCTTG 60.501 50.000 19.69 11.13 46.39 3.61
1213 1473 3.969976 TGGGAGAATAGATCACTCCTTGG 59.030 47.826 19.69 0.00 46.39 3.61
1214 1474 3.970640 GGGAGAATAGATCACTCCTTGGT 59.029 47.826 19.69 0.00 46.39 3.67
1215 1475 4.039852 GGGAGAATAGATCACTCCTTGGTC 59.960 50.000 19.69 6.84 46.39 4.02
1216 1476 4.039852 GGAGAATAGATCACTCCTTGGTCC 59.960 50.000 15.85 0.00 44.54 4.46
1217 1477 4.624913 AGAATAGATCACTCCTTGGTCCA 58.375 43.478 0.00 0.00 35.70 4.02
1218 1478 5.032846 AGAATAGATCACTCCTTGGTCCAA 58.967 41.667 3.76 3.76 35.70 3.53
1219 1479 4.762289 ATAGATCACTCCTTGGTCCAAC 57.238 45.455 0.00 0.00 35.70 3.77
1220 1480 1.276421 AGATCACTCCTTGGTCCAACG 59.724 52.381 0.00 0.00 35.70 4.10
1221 1481 0.321653 ATCACTCCTTGGTCCAACGC 60.322 55.000 0.00 0.00 0.00 4.84
1222 1482 1.966451 CACTCCTTGGTCCAACGCC 60.966 63.158 0.00 0.00 0.00 5.68
1223 1483 2.359975 CTCCTTGGTCCAACGCCC 60.360 66.667 0.00 0.00 0.00 6.13
1224 1484 2.852075 TCCTTGGTCCAACGCCCT 60.852 61.111 0.00 0.00 0.00 5.19
1225 1485 1.536907 TCCTTGGTCCAACGCCCTA 60.537 57.895 0.00 0.00 0.00 3.53
1226 1486 1.128809 TCCTTGGTCCAACGCCCTAA 61.129 55.000 0.00 0.00 0.00 2.69
1227 1487 0.250989 CCTTGGTCCAACGCCCTAAA 60.251 55.000 0.00 0.00 0.00 1.85
1228 1488 0.879090 CTTGGTCCAACGCCCTAAAC 59.121 55.000 0.00 0.00 0.00 2.01
1229 1489 0.475044 TTGGTCCAACGCCCTAAACT 59.525 50.000 0.00 0.00 0.00 2.66
1230 1490 0.035739 TGGTCCAACGCCCTAAACTC 59.964 55.000 0.00 0.00 0.00 3.01
1231 1491 1.017701 GGTCCAACGCCCTAAACTCG 61.018 60.000 0.00 0.00 0.00 4.18
1232 1492 0.037975 GTCCAACGCCCTAAACTCGA 60.038 55.000 0.00 0.00 0.00 4.04
1233 1493 0.037975 TCCAACGCCCTAAACTCGAC 60.038 55.000 0.00 0.00 0.00 4.20
1234 1494 0.320073 CCAACGCCCTAAACTCGACA 60.320 55.000 0.00 0.00 0.00 4.35
1235 1495 1.068474 CAACGCCCTAAACTCGACAG 58.932 55.000 0.00 0.00 0.00 3.51
1236 1496 0.037605 AACGCCCTAAACTCGACAGG 60.038 55.000 0.00 0.00 0.00 4.00
1237 1497 0.896940 ACGCCCTAAACTCGACAGGA 60.897 55.000 0.00 0.00 0.00 3.86
1238 1498 0.460311 CGCCCTAAACTCGACAGGAT 59.540 55.000 0.00 0.00 0.00 3.24
1239 1499 1.134788 CGCCCTAAACTCGACAGGATT 60.135 52.381 0.00 0.00 0.00 3.01
1240 1500 2.677037 CGCCCTAAACTCGACAGGATTT 60.677 50.000 0.00 0.00 0.00 2.17
1241 1501 2.678336 GCCCTAAACTCGACAGGATTTG 59.322 50.000 0.00 0.00 0.00 2.32
1242 1502 2.678336 CCCTAAACTCGACAGGATTTGC 59.322 50.000 0.00 0.00 0.00 3.68
1243 1503 2.348666 CCTAAACTCGACAGGATTTGCG 59.651 50.000 0.00 0.00 0.00 4.85
1244 1504 0.517316 AAACTCGACAGGATTTGCGC 59.483 50.000 0.00 0.00 0.00 6.09
1245 1505 0.320771 AACTCGACAGGATTTGCGCT 60.321 50.000 9.73 0.00 0.00 5.92
1246 1506 0.530744 ACTCGACAGGATTTGCGCTA 59.469 50.000 9.73 0.00 0.00 4.26
1247 1507 0.924090 CTCGACAGGATTTGCGCTAC 59.076 55.000 9.73 0.00 0.00 3.58
1248 1508 0.530744 TCGACAGGATTTGCGCTACT 59.469 50.000 9.73 0.00 0.00 2.57
1249 1509 0.647410 CGACAGGATTTGCGCTACTG 59.353 55.000 9.73 7.48 35.40 2.74
1250 1510 1.726853 GACAGGATTTGCGCTACTGT 58.273 50.000 12.45 12.45 44.34 3.55
1269 1529 9.877178 GCTACTGTATACAAGCCATAATCTAAT 57.123 33.333 15.78 0.00 0.00 1.73
1289 1561 8.902540 TCTAATACCCAATATGACACAATGAC 57.097 34.615 0.00 0.00 0.00 3.06
1294 1566 3.938334 CCAATATGACACAATGACACGGA 59.062 43.478 0.00 0.00 0.00 4.69
1307 1579 6.071560 ACAATGACACGGATAGAGTAGAAACA 60.072 38.462 0.00 0.00 0.00 2.83
1308 1580 5.562506 TGACACGGATAGAGTAGAAACAG 57.437 43.478 0.00 0.00 0.00 3.16
1309 1581 5.008331 TGACACGGATAGAGTAGAAACAGT 58.992 41.667 0.00 0.00 0.00 3.55
1328 1600 6.673154 ACAGTACTGTTTTCCAAAGTACAC 57.327 37.500 22.95 0.00 45.66 2.90
1460 1772 1.309950 TTGCGAGGAGAGGAGATACG 58.690 55.000 0.00 0.00 0.00 3.06
1515 1907 3.314693 TCCTTATAGAATTGGCCGTCCT 58.685 45.455 0.00 0.00 0.00 3.85
1542 1936 3.874543 TGCATCGTACATATCGGCTTTTT 59.125 39.130 0.00 0.00 0.00 1.94
1543 1937 5.051153 TGCATCGTACATATCGGCTTTTTA 58.949 37.500 0.00 0.00 0.00 1.52
1544 1938 5.050634 TGCATCGTACATATCGGCTTTTTAC 60.051 40.000 0.00 0.00 0.00 2.01
1546 1940 6.292703 GCATCGTACATATCGGCTTTTTACTT 60.293 38.462 0.00 0.00 0.00 2.24
1547 1941 6.578020 TCGTACATATCGGCTTTTTACTTG 57.422 37.500 0.00 0.00 0.00 3.16
1548 1942 5.521010 TCGTACATATCGGCTTTTTACTTGG 59.479 40.000 0.00 0.00 0.00 3.61
1549 1943 5.277154 CGTACATATCGGCTTTTTACTTGGG 60.277 44.000 0.00 0.00 0.00 4.12
1550 1944 4.850680 ACATATCGGCTTTTTACTTGGGA 58.149 39.130 0.00 0.00 0.00 4.37
1563 1957 6.461110 TTTACTTGGGAGGTCTATTCTACG 57.539 41.667 0.00 0.00 0.00 3.51
1570 1964 2.807392 GAGGTCTATTCTACGAGGTCGG 59.193 54.545 4.13 0.00 44.95 4.79
1576 1970 3.784511 ATTCTACGAGGTCGGAGGATA 57.215 47.619 11.67 0.00 46.30 2.59
1582 1976 2.080693 CGAGGTCGGAGGATAGAGATG 58.919 57.143 0.00 0.00 35.37 2.90
1676 2070 3.122480 TCTTAAGATTGGGCCTCCATCA 58.878 45.455 4.53 0.00 43.63 3.07
1677 2071 3.723681 TCTTAAGATTGGGCCTCCATCAT 59.276 43.478 4.53 0.00 43.63 2.45
1678 2072 2.671896 AAGATTGGGCCTCCATCATC 57.328 50.000 4.53 0.00 43.63 2.92
1694 2088 4.334759 CCATCATCTTAGGTTGTTGCTCTG 59.665 45.833 0.00 0.00 0.00 3.35
1697 2091 5.376625 TCATCTTAGGTTGTTGCTCTGTTT 58.623 37.500 0.00 0.00 0.00 2.83
1783 2178 1.636988 GCCTGACATTTGCTCAATGC 58.363 50.000 8.60 3.95 45.74 3.56
1854 2250 5.523916 AGAAAACATGTATCGTATGTCTGGC 59.476 40.000 0.00 0.00 37.77 4.85
1855 2251 4.400529 AACATGTATCGTATGTCTGGCA 57.599 40.909 0.00 0.00 37.77 4.92
1857 2253 4.119862 ACATGTATCGTATGTCTGGCAAC 58.880 43.478 0.00 0.00 33.72 4.17
1858 2254 2.804647 TGTATCGTATGTCTGGCAACG 58.195 47.619 2.39 2.39 42.51 4.10
1872 2268 0.665835 GCAACGACAACAATCCACCA 59.334 50.000 0.00 0.00 0.00 4.17
2137 2534 3.702048 CGCCACTTTCCCTCCCGA 61.702 66.667 0.00 0.00 0.00 5.14
2206 2631 4.357918 AATCTGCACCAGGTATATCCAC 57.642 45.455 0.00 0.00 39.02 4.02
2215 2640 6.540189 GCACCAGGTATATCCACATATTGATC 59.460 42.308 0.00 0.00 39.02 2.92
2217 2642 7.984050 CACCAGGTATATCCACATATTGATCTC 59.016 40.741 0.00 0.00 39.02 2.75
2220 2645 8.134261 CAGGTATATCCACATATTGATCTCTCG 58.866 40.741 0.00 0.00 39.02 4.04
2231 2656 7.551262 ACATATTGATCTCTCGTACTAGCTAGG 59.449 40.741 24.35 7.39 0.00 3.02
2250 2867 3.187700 AGGTACGTTTGATTGATCGAGC 58.812 45.455 0.00 0.00 0.00 5.03
2258 2875 5.898606 CGTTTGATTGATCGAGCTGTTAATC 59.101 40.000 0.90 3.38 0.00 1.75
2267 6122 3.689161 TCGAGCTGTTAATCATGGGTTTG 59.311 43.478 0.00 0.00 0.00 2.93
2308 6163 0.178961 GGTGGGGCAGGAGAAGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
2337 6192 1.089978 TAGACTTGAGAGGGTGGGGA 58.910 55.000 0.00 0.00 0.00 4.81
2373 6228 2.187685 CGAGGCTATGTGGCAGCA 59.812 61.111 0.00 0.00 44.55 4.41
2424 6279 1.826487 GTTGGGGCGTGTGTTCCTT 60.826 57.895 0.00 0.00 0.00 3.36
2475 6330 2.354328 TGGAAGATGGTGTACCCCTTT 58.646 47.619 0.00 0.00 31.18 3.11
2511 6366 7.433680 AGACAAAGAAGAAGTTTGTGTTTGTT 58.566 30.769 13.00 4.97 45.87 2.83
2519 6374 6.862209 AGAAGTTTGTGTTTGTTGCTGATAA 58.138 32.000 0.00 0.00 0.00 1.75
2535 6390 0.389391 ATAAGGACCTCGATGCCACG 59.611 55.000 0.00 0.00 0.00 4.94
2538 6393 2.782222 GGACCTCGATGCCACGCTA 61.782 63.158 0.00 0.00 0.00 4.26
2539 6394 1.141019 GACCTCGATGCCACGCTAA 59.859 57.895 0.00 0.00 0.00 3.09
2573 6428 1.904990 GAGTCCCAACTCCCTGAGGC 61.905 65.000 0.00 0.00 45.26 4.70
2586 6441 2.822255 GAGGCATACGGCGGCAAA 60.822 61.111 13.24 0.00 46.16 3.68
2601 6456 2.158957 CGGCAAACTCAAGCTATAGGGA 60.159 50.000 1.04 0.00 0.00 4.20
2610 6465 8.958060 AACTCAAGCTATAGGGATACAATAGA 57.042 34.615 1.04 0.00 36.62 1.98
2650 6505 8.066668 GTCCATCTGACTATCGAACAATTAAG 57.933 38.462 0.00 0.00 41.03 1.85
2655 6510 9.915629 ATCTGACTATCGAACAATTAAGATACC 57.084 33.333 0.00 0.00 0.00 2.73
2681 6536 1.455773 GGGTGCCCTGAAATAGCCC 60.456 63.158 0.00 0.00 0.00 5.19
2696 6551 3.541713 CCCTCGGTGGAGCCTAGC 61.542 72.222 0.00 0.00 39.06 3.42
2697 6552 2.443016 CCTCGGTGGAGCCTAGCT 60.443 66.667 0.00 0.00 43.88 3.32
2698 6553 1.152735 CCTCGGTGGAGCCTAGCTA 60.153 63.158 0.00 0.00 39.88 3.32
2699 6554 1.175983 CCTCGGTGGAGCCTAGCTAG 61.176 65.000 14.20 14.20 39.88 3.42
2703 6558 0.972883 GGTGGAGCCTAGCTAGATGG 59.027 60.000 22.70 7.76 39.88 3.51
2729 6584 1.795162 GCGACAATCCTTTCAATGGCG 60.795 52.381 0.00 0.00 46.71 5.69
2733 6588 1.134946 CAATCCTTTCAATGGCGGGAC 59.865 52.381 0.00 0.00 0.00 4.46
2746 6601 2.202756 GGGACATCGACTCACCGC 60.203 66.667 0.00 0.00 0.00 5.68
2786 6706 4.581824 CCATATGAGGCTATGCAGTGTTTT 59.418 41.667 3.65 0.00 0.00 2.43
2870 6808 8.827177 TTGTGTGGTGAGTCTAATTAAGTTAG 57.173 34.615 0.00 0.00 40.99 2.34
2891 6829 9.273016 AGTTAGCAATATTGTACATACACATCC 57.727 33.333 16.61 0.00 35.64 3.51
2893 6831 7.496529 AGCAATATTGTACATACACATCCAC 57.503 36.000 16.61 0.00 35.64 4.02
2894 6832 7.053498 AGCAATATTGTACATACACATCCACA 58.947 34.615 16.61 0.00 35.64 4.17
2895 6833 7.720957 AGCAATATTGTACATACACATCCACAT 59.279 33.333 16.61 0.00 35.64 3.21
2896 6834 7.804600 GCAATATTGTACATACACATCCACATG 59.195 37.037 16.61 0.00 35.64 3.21
2938 6895 9.965902 AATCTAAGGCCTACAGATTTAATATGG 57.034 33.333 26.19 3.55 35.93 2.74
2946 6903 6.934645 CCTACAGATTTAATATGGAAGCCGAA 59.065 38.462 4.57 0.00 0.00 4.30
2999 6956 1.308998 CCGCACACCTGAACTTTTCT 58.691 50.000 0.00 0.00 0.00 2.52
3003 6961 3.695816 GCACACCTGAACTTTTCTTCAC 58.304 45.455 0.00 0.00 0.00 3.18
3020 6978 4.335315 TCTTCACGCTCAAAAGATGTTGTT 59.665 37.500 0.00 0.00 0.00 2.83
3021 6979 5.525745 TCTTCACGCTCAAAAGATGTTGTTA 59.474 36.000 0.00 0.00 0.00 2.41
3023 6981 4.572795 TCACGCTCAAAAGATGTTGTTACA 59.427 37.500 0.00 0.00 38.95 2.41
3026 6984 6.519761 CACGCTCAAAAGATGTTGTTACATAC 59.480 38.462 0.00 0.00 44.90 2.39
3036 7033 8.235359 AGATGTTGTTACATACTACTACCTCC 57.765 38.462 0.00 0.00 44.90 4.30
3039 7036 6.094048 TGTTGTTACATACTACTACCTCCGTC 59.906 42.308 0.00 0.00 34.20 4.79
3044 7041 2.124151 TACTACCTCCGTCCGGGC 60.124 66.667 0.00 0.00 34.94 6.13
3051 7048 1.227556 CTCCGTCCGGGCTTATTGG 60.228 63.158 3.66 0.00 34.94 3.16
3059 7056 4.277552 GGCTTATTGGGCCCCTTC 57.722 61.111 22.27 1.89 43.49 3.46
3071 7068 3.588742 CCCCTTCGTATTTTGGGCT 57.411 52.632 0.00 0.00 38.37 5.19
3072 7069 2.721425 CCCCTTCGTATTTTGGGCTA 57.279 50.000 0.00 0.00 38.37 3.93
3081 7078 4.933400 TCGTATTTTGGGCTAGACTTTGAC 59.067 41.667 0.00 0.00 0.00 3.18
3114 7111 8.750515 AGACTACTAAACTATGAAGTACTCCC 57.249 38.462 0.00 0.00 33.75 4.30
3115 7112 8.559175 AGACTACTAAACTATGAAGTACTCCCT 58.441 37.037 0.00 0.00 33.75 4.20
3116 7113 8.750515 ACTACTAAACTATGAAGTACTCCCTC 57.249 38.462 0.00 0.00 33.75 4.30
3117 7114 7.779326 ACTACTAAACTATGAAGTACTCCCTCC 59.221 40.741 0.00 0.00 33.75 4.30
3118 7115 5.593502 ACTAAACTATGAAGTACTCCCTCCG 59.406 44.000 0.00 0.00 33.75 4.63
3119 7116 3.666345 ACTATGAAGTACTCCCTCCGT 57.334 47.619 0.00 0.00 32.84 4.69
3120 7117 3.553904 ACTATGAAGTACTCCCTCCGTC 58.446 50.000 0.00 0.00 32.84 4.79
3121 7118 1.777941 ATGAAGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3122 7119 0.406750 TGAAGTACTCCCTCCGTCCA 59.593 55.000 0.00 0.00 0.00 4.02
3123 7120 1.006758 TGAAGTACTCCCTCCGTCCAT 59.993 52.381 0.00 0.00 0.00 3.41
3124 7121 2.108970 GAAGTACTCCCTCCGTCCATT 58.891 52.381 0.00 0.00 0.00 3.16
3125 7122 2.249309 AGTACTCCCTCCGTCCATTT 57.751 50.000 0.00 0.00 0.00 2.32
3126 7123 2.108970 AGTACTCCCTCCGTCCATTTC 58.891 52.381 0.00 0.00 0.00 2.17
3127 7124 2.108970 GTACTCCCTCCGTCCATTTCT 58.891 52.381 0.00 0.00 0.00 2.52
3128 7125 1.196012 ACTCCCTCCGTCCATTTCTC 58.804 55.000 0.00 0.00 0.00 2.87
3129 7126 0.466124 CTCCCTCCGTCCATTTCTCC 59.534 60.000 0.00 0.00 0.00 3.71
3130 7127 1.144057 CCCTCCGTCCATTTCTCCG 59.856 63.158 0.00 0.00 0.00 4.63
3131 7128 1.327690 CCCTCCGTCCATTTCTCCGA 61.328 60.000 0.00 0.00 0.00 4.55
3132 7129 0.179108 CCTCCGTCCATTTCTCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
3133 7130 0.530744 CTCCGTCCATTTCTCCGACA 59.469 55.000 0.00 0.00 0.00 4.35
3134 7131 0.970640 TCCGTCCATTTCTCCGACAA 59.029 50.000 0.00 0.00 0.00 3.18
3135 7132 1.067142 TCCGTCCATTTCTCCGACAAG 60.067 52.381 0.00 0.00 0.00 3.16
3136 7133 1.337823 CCGTCCATTTCTCCGACAAGT 60.338 52.381 0.00 0.00 0.00 3.16
3137 7134 2.094390 CCGTCCATTTCTCCGACAAGTA 60.094 50.000 0.00 0.00 0.00 2.24
3138 7135 3.430374 CCGTCCATTTCTCCGACAAGTAT 60.430 47.826 0.00 0.00 0.00 2.12
3139 7136 4.181578 CGTCCATTTCTCCGACAAGTATT 58.818 43.478 0.00 0.00 0.00 1.89
3140 7137 4.630069 CGTCCATTTCTCCGACAAGTATTT 59.370 41.667 0.00 0.00 0.00 1.40
3141 7138 5.220416 CGTCCATTTCTCCGACAAGTATTTC 60.220 44.000 0.00 0.00 0.00 2.17
3142 7139 5.064834 GTCCATTTCTCCGACAAGTATTTCC 59.935 44.000 0.00 0.00 0.00 3.13
3143 7140 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3144 7141 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3145 7142 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3146 7143 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3147 7144 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3148 7145 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3149 7146 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3150 7147 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3151 7148 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3152 7149 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3300 7298 0.179009 GGGGCCTAATAAACCCGGAC 60.179 60.000 0.73 0.00 45.27 4.79
3302 7300 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
3303 7301 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
3306 7304 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
3307 7305 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
3308 7306 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
3309 7307 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
3310 7308 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
3311 7309 0.259938 AACCCGGACGGAGGTAGTAT 59.740 55.000 13.13 0.00 34.45 2.12
3312 7310 0.259938 ACCCGGACGGAGGTAGTATT 59.740 55.000 13.13 0.00 37.50 1.89
3313 7311 1.342374 ACCCGGACGGAGGTAGTATTT 60.342 52.381 13.13 0.00 37.50 1.40
3314 7312 1.068127 CCCGGACGGAGGTAGTATTTG 59.932 57.143 13.13 0.00 37.50 2.32
3315 7313 1.753073 CCGGACGGAGGTAGTATTTGT 59.247 52.381 4.40 0.00 37.50 2.83
3316 7314 2.951642 CCGGACGGAGGTAGTATTTGTA 59.048 50.000 4.40 0.00 37.50 2.41
3317 7315 3.004106 CCGGACGGAGGTAGTATTTGTAG 59.996 52.174 4.40 0.00 37.50 2.74
3318 7316 3.879295 CGGACGGAGGTAGTATTTGTAGA 59.121 47.826 0.00 0.00 0.00 2.59
3319 7317 4.024218 CGGACGGAGGTAGTATTTGTAGAG 60.024 50.000 0.00 0.00 0.00 2.43
3320 7318 5.128919 GGACGGAGGTAGTATTTGTAGAGA 58.871 45.833 0.00 0.00 0.00 3.10
3321 7319 5.239087 GGACGGAGGTAGTATTTGTAGAGAG 59.761 48.000 0.00 0.00 0.00 3.20
3322 7320 5.753716 ACGGAGGTAGTATTTGTAGAGAGT 58.246 41.667 0.00 0.00 0.00 3.24
3323 7321 6.893583 ACGGAGGTAGTATTTGTAGAGAGTA 58.106 40.000 0.00 0.00 0.00 2.59
3324 7322 6.765512 ACGGAGGTAGTATTTGTAGAGAGTAC 59.234 42.308 0.00 0.00 0.00 2.73
3325 7323 6.765036 CGGAGGTAGTATTTGTAGAGAGTACA 59.235 42.308 0.00 0.00 0.00 2.90
3326 7324 7.444792 CGGAGGTAGTATTTGTAGAGAGTACAT 59.555 40.741 0.00 0.00 0.00 2.29
3327 7325 8.785946 GGAGGTAGTATTTGTAGAGAGTACATC 58.214 40.741 0.00 0.00 31.11 3.06
3328 7326 9.339850 GAGGTAGTATTTGTAGAGAGTACATCA 57.660 37.037 0.00 0.00 31.84 3.07
3329 7327 9.696572 AGGTAGTATTTGTAGAGAGTACATCAA 57.303 33.333 0.00 0.00 0.00 2.57
3377 7375 9.918630 AGTAAGATGAAAATGAATTTTGTGAGG 57.081 29.630 5.76 0.00 39.86 3.86
3378 7376 9.696917 GTAAGATGAAAATGAATTTTGTGAGGT 57.303 29.630 5.76 0.00 39.86 3.85
3379 7377 8.597662 AAGATGAAAATGAATTTTGTGAGGTG 57.402 30.769 5.76 0.00 39.86 4.00
3380 7378 7.156673 AGATGAAAATGAATTTTGTGAGGTGG 58.843 34.615 5.76 0.00 39.86 4.61
3381 7379 6.477053 TGAAAATGAATTTTGTGAGGTGGA 57.523 33.333 5.76 0.00 39.86 4.02
3382 7380 6.882656 TGAAAATGAATTTTGTGAGGTGGAA 58.117 32.000 5.76 0.00 39.86 3.53
3383 7381 7.334090 TGAAAATGAATTTTGTGAGGTGGAAA 58.666 30.769 5.76 0.00 39.86 3.13
3384 7382 7.992033 TGAAAATGAATTTTGTGAGGTGGAAAT 59.008 29.630 5.76 0.00 39.86 2.17
3385 7383 9.487790 GAAAATGAATTTTGTGAGGTGGAAATA 57.512 29.630 5.76 0.00 39.86 1.40
3387 7385 9.439500 AAATGAATTTTGTGAGGTGGAAATATG 57.561 29.630 0.00 0.00 0.00 1.78
3388 7386 7.537596 TGAATTTTGTGAGGTGGAAATATGT 57.462 32.000 0.00 0.00 0.00 2.29
3389 7387 7.601856 TGAATTTTGTGAGGTGGAAATATGTC 58.398 34.615 0.00 0.00 0.00 3.06
3390 7388 7.232330 TGAATTTTGTGAGGTGGAAATATGTCA 59.768 33.333 0.00 0.00 0.00 3.58
3391 7389 5.957842 TTTGTGAGGTGGAAATATGTCAC 57.042 39.130 0.00 0.00 35.84 3.67
3392 7390 4.632327 TGTGAGGTGGAAATATGTCACA 57.368 40.909 0.00 0.00 41.42 3.58
3393 7391 4.578871 TGTGAGGTGGAAATATGTCACAG 58.421 43.478 0.00 0.00 39.40 3.66
3394 7392 4.285775 TGTGAGGTGGAAATATGTCACAGA 59.714 41.667 0.00 0.00 39.40 3.41
3395 7393 4.872691 GTGAGGTGGAAATATGTCACAGAG 59.127 45.833 0.00 0.00 35.45 3.35
3396 7394 4.080919 TGAGGTGGAAATATGTCACAGAGG 60.081 45.833 0.00 0.00 33.45 3.69
3397 7395 4.104086 AGGTGGAAATATGTCACAGAGGA 58.896 43.478 0.00 0.00 33.45 3.71
3398 7396 4.080863 AGGTGGAAATATGTCACAGAGGAC 60.081 45.833 0.00 0.00 38.29 3.85
3409 7407 6.801539 TGTCACAGAGGACACAAATTAATC 57.198 37.500 0.00 0.00 42.56 1.75
3410 7408 6.295249 TGTCACAGAGGACACAAATTAATCA 58.705 36.000 0.00 0.00 42.56 2.57
3411 7409 6.942005 TGTCACAGAGGACACAAATTAATCAT 59.058 34.615 0.00 0.00 42.56 2.45
3412 7410 7.448161 TGTCACAGAGGACACAAATTAATCATT 59.552 33.333 0.00 0.00 42.56 2.57
3413 7411 8.299570 GTCACAGAGGACACAAATTAATCATTT 58.700 33.333 0.00 0.00 37.73 2.32
3414 7412 8.859090 TCACAGAGGACACAAATTAATCATTTT 58.141 29.630 0.00 0.00 32.24 1.82
3415 7413 9.480053 CACAGAGGACACAAATTAATCATTTTT 57.520 29.630 0.00 0.00 32.24 1.94
3430 7428 3.125520 TTTTTCCTGGGGCAGTCAC 57.874 52.632 0.00 0.00 0.00 3.67
3431 7429 0.260230 TTTTTCCTGGGGCAGTCACA 59.740 50.000 0.00 0.00 0.00 3.58
3432 7430 0.178992 TTTTCCTGGGGCAGTCACAG 60.179 55.000 0.00 0.00 0.00 3.66
3433 7431 1.352622 TTTCCTGGGGCAGTCACAGT 61.353 55.000 2.92 0.00 0.00 3.55
3434 7432 1.768684 TTCCTGGGGCAGTCACAGTC 61.769 60.000 2.92 0.00 0.00 3.51
3435 7433 2.219875 CCTGGGGCAGTCACAGTCT 61.220 63.158 2.92 0.00 0.00 3.24
3436 7434 1.294780 CTGGGGCAGTCACAGTCTC 59.705 63.158 0.00 0.00 0.00 3.36
3437 7435 1.459348 TGGGGCAGTCACAGTCTCA 60.459 57.895 0.00 0.00 0.00 3.27
3438 7436 1.004440 GGGGCAGTCACAGTCTCAC 60.004 63.158 0.00 0.00 0.00 3.51
3439 7437 1.748403 GGGCAGTCACAGTCTCACA 59.252 57.895 0.00 0.00 0.00 3.58
3440 7438 0.320247 GGGCAGTCACAGTCTCACAG 60.320 60.000 0.00 0.00 0.00 3.66
3441 7439 0.676184 GGCAGTCACAGTCTCACAGA 59.324 55.000 0.00 0.00 0.00 3.41
3442 7440 1.274728 GGCAGTCACAGTCTCACAGAT 59.725 52.381 0.00 0.00 0.00 2.90
3443 7441 2.289320 GGCAGTCACAGTCTCACAGATT 60.289 50.000 0.00 0.00 0.00 2.40
3444 7442 3.056536 GGCAGTCACAGTCTCACAGATTA 60.057 47.826 0.00 0.00 0.00 1.75
3445 7443 4.560128 GCAGTCACAGTCTCACAGATTAA 58.440 43.478 0.00 0.00 0.00 1.40
3446 7444 4.387256 GCAGTCACAGTCTCACAGATTAAC 59.613 45.833 0.00 0.00 0.00 2.01
3447 7445 4.926238 CAGTCACAGTCTCACAGATTAACC 59.074 45.833 0.00 0.00 0.00 2.85
3448 7446 4.588951 AGTCACAGTCTCACAGATTAACCA 59.411 41.667 0.00 0.00 0.00 3.67
3449 7447 4.686554 GTCACAGTCTCACAGATTAACCAC 59.313 45.833 0.00 0.00 0.00 4.16
3450 7448 3.675225 CACAGTCTCACAGATTAACCACG 59.325 47.826 0.00 0.00 0.00 4.94
3451 7449 3.321111 ACAGTCTCACAGATTAACCACGT 59.679 43.478 0.00 0.00 0.00 4.49
3452 7450 3.675225 CAGTCTCACAGATTAACCACGTG 59.325 47.826 9.08 9.08 0.00 4.49
3453 7451 3.321111 AGTCTCACAGATTAACCACGTGT 59.679 43.478 15.65 0.00 0.00 4.49
3454 7452 3.673809 GTCTCACAGATTAACCACGTGTC 59.326 47.826 15.65 4.82 0.00 3.67
3455 7453 3.572682 TCTCACAGATTAACCACGTGTCT 59.427 43.478 15.65 7.32 0.00 3.41
3456 7454 4.038763 TCTCACAGATTAACCACGTGTCTT 59.961 41.667 15.65 7.83 0.00 3.01
3460 7458 1.997606 GATTAACCACGTGTCTTCCCG 59.002 52.381 15.65 0.00 0.00 5.14
3464 7462 0.531311 ACCACGTGTCTTCCCGAAAC 60.531 55.000 15.65 0.00 0.00 2.78
3468 7466 1.000171 ACGTGTCTTCCCGAAACTACC 60.000 52.381 0.00 0.00 0.00 3.18
3470 7468 1.345415 GTGTCTTCCCGAAACTACCCA 59.655 52.381 0.00 0.00 0.00 4.51
3552 7551 1.327690 TTCCATCCTCGTCTTCCCCG 61.328 60.000 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.040646 TCCGCTATTAGGCTGTGGAG 58.959 55.000 0.00 0.00 35.72 3.86
1 2 0.750850 GTCCGCTATTAGGCTGTGGA 59.249 55.000 0.00 0.00 37.95 4.02
2 3 0.753262 AGTCCGCTATTAGGCTGTGG 59.247 55.000 0.00 0.00 0.00 4.17
3 4 2.604046 AAGTCCGCTATTAGGCTGTG 57.396 50.000 0.00 0.00 0.00 3.66
4 5 2.500098 TCAAAGTCCGCTATTAGGCTGT 59.500 45.455 0.00 0.00 0.00 4.40
5 6 3.126831 CTCAAAGTCCGCTATTAGGCTG 58.873 50.000 0.00 0.00 0.00 4.85
6 7 2.766828 ACTCAAAGTCCGCTATTAGGCT 59.233 45.455 0.00 0.00 0.00 4.58
7 8 3.180891 ACTCAAAGTCCGCTATTAGGC 57.819 47.619 0.00 0.00 0.00 3.93
8 9 4.201822 GCAAACTCAAAGTCCGCTATTAGG 60.202 45.833 0.00 0.00 0.00 2.69
9 10 4.631813 AGCAAACTCAAAGTCCGCTATTAG 59.368 41.667 2.41 0.00 34.92 1.73
10 11 4.575885 AGCAAACTCAAAGTCCGCTATTA 58.424 39.130 2.41 0.00 34.92 0.98
11 12 3.412386 AGCAAACTCAAAGTCCGCTATT 58.588 40.909 2.41 0.00 34.92 1.73
12 13 3.059352 AGCAAACTCAAAGTCCGCTAT 57.941 42.857 2.41 0.00 34.92 2.97
13 14 2.543777 AGCAAACTCAAAGTCCGCTA 57.456 45.000 2.41 0.00 34.92 4.26
14 15 2.543777 TAGCAAACTCAAAGTCCGCT 57.456 45.000 7.92 7.92 38.59 5.52
15 16 2.350484 GGTTAGCAAACTCAAAGTCCGC 60.350 50.000 0.00 0.00 35.81 5.54
16 17 2.875933 TGGTTAGCAAACTCAAAGTCCG 59.124 45.455 0.00 0.00 35.81 4.79
17 18 3.630312 TGTGGTTAGCAAACTCAAAGTCC 59.370 43.478 0.00 0.00 35.81 3.85
18 19 4.893424 TGTGGTTAGCAAACTCAAAGTC 57.107 40.909 0.00 0.00 35.81 3.01
19 20 4.644685 ACATGTGGTTAGCAAACTCAAAGT 59.355 37.500 0.00 0.00 35.81 2.66
20 21 5.186996 ACATGTGGTTAGCAAACTCAAAG 57.813 39.130 0.00 0.00 35.81 2.77
21 22 4.037446 GGACATGTGGTTAGCAAACTCAAA 59.963 41.667 1.15 0.00 35.81 2.69
22 23 3.568007 GGACATGTGGTTAGCAAACTCAA 59.432 43.478 1.15 0.00 35.81 3.02
23 24 3.146066 GGACATGTGGTTAGCAAACTCA 58.854 45.455 1.15 0.00 35.81 3.41
24 25 2.488153 GGGACATGTGGTTAGCAAACTC 59.512 50.000 1.15 0.00 35.81 3.01
25 26 2.158534 TGGGACATGTGGTTAGCAAACT 60.159 45.455 1.15 0.00 35.81 2.66
26 27 2.235016 TGGGACATGTGGTTAGCAAAC 58.765 47.619 1.15 0.00 34.66 2.93
27 28 2.666272 TGGGACATGTGGTTAGCAAA 57.334 45.000 1.15 0.00 0.00 3.68
41 42 0.676782 AGGCTGTTAACGCATGGGAC 60.677 55.000 17.76 4.95 0.00 4.46
42 43 0.906066 TAGGCTGTTAACGCATGGGA 59.094 50.000 17.76 0.00 0.00 4.37
43 44 1.745232 TTAGGCTGTTAACGCATGGG 58.255 50.000 19.13 8.44 0.00 4.00
44 45 3.694734 CAATTAGGCTGTTAACGCATGG 58.305 45.455 19.13 4.06 0.00 3.66
45 46 3.108144 GCAATTAGGCTGTTAACGCATG 58.892 45.455 19.13 12.26 0.00 4.06
46 47 2.752354 TGCAATTAGGCTGTTAACGCAT 59.248 40.909 19.13 15.95 34.04 4.73
47 48 2.155279 TGCAATTAGGCTGTTAACGCA 58.845 42.857 19.13 9.12 34.04 5.24
48 49 2.911819 TGCAATTAGGCTGTTAACGC 57.088 45.000 12.16 12.16 34.04 4.84
49 50 4.083003 TCCTTTGCAATTAGGCTGTTAACG 60.083 41.667 11.71 0.00 34.04 3.18
50 51 5.385509 TCCTTTGCAATTAGGCTGTTAAC 57.614 39.130 11.71 0.00 34.04 2.01
51 52 4.462483 CCTCCTTTGCAATTAGGCTGTTAA 59.538 41.667 11.71 0.00 34.04 2.01
98 99 5.504853 CTTAATTCCTCTGCCTCCTTTTCT 58.495 41.667 0.00 0.00 0.00 2.52
99 100 4.097135 GCTTAATTCCTCTGCCTCCTTTTC 59.903 45.833 0.00 0.00 0.00 2.29
100 101 4.019858 GCTTAATTCCTCTGCCTCCTTTT 58.980 43.478 0.00 0.00 0.00 2.27
101 102 3.625853 GCTTAATTCCTCTGCCTCCTTT 58.374 45.455 0.00 0.00 0.00 3.11
102 103 2.420687 CGCTTAATTCCTCTGCCTCCTT 60.421 50.000 0.00 0.00 0.00 3.36
195 196 1.548973 CGTGCAGCTCGTTCGTTTCT 61.549 55.000 8.73 0.00 0.00 2.52
216 217 1.068474 CGATATCGCCATCGTTTCCC 58.932 55.000 12.95 0.00 42.22 3.97
322 335 0.804364 TGCGATTAAACTGCTGCTGG 59.196 50.000 11.29 1.84 0.00 4.85
328 341 5.566016 TCACGTTTATTTGCGATTAAACTGC 59.434 36.000 21.00 4.59 36.57 4.40
329 342 6.248420 CCTCACGTTTATTTGCGATTAAACTG 59.752 38.462 21.00 18.10 36.57 3.16
330 343 6.148150 TCCTCACGTTTATTTGCGATTAAACT 59.852 34.615 21.00 11.02 36.57 2.66
331 344 6.247791 GTCCTCACGTTTATTTGCGATTAAAC 59.752 38.462 16.53 16.53 35.78 2.01
332 345 6.308675 GTCCTCACGTTTATTTGCGATTAAA 58.691 36.000 0.00 0.00 0.00 1.52
412 645 2.626255 TACACCCAAAACCGCTGGCA 62.626 55.000 0.00 0.00 32.10 4.92
413 646 1.899534 TACACCCAAAACCGCTGGC 60.900 57.895 0.00 0.00 32.10 4.85
436 675 2.977914 TGAGTTAATGGCAGACAGAGC 58.022 47.619 0.00 0.00 0.00 4.09
437 676 5.525378 GGTAATGAGTTAATGGCAGACAGAG 59.475 44.000 0.00 0.00 0.00 3.35
450 689 5.845103 TCAACAGTGAACGGTAATGAGTTA 58.155 37.500 0.00 0.00 0.00 2.24
481 720 0.897621 CCCTGGAACTTGGGAATTGC 59.102 55.000 0.00 0.00 43.35 3.56
499 738 3.677424 CGGACATCCACTTCTCTTCTTCC 60.677 52.174 0.00 0.00 35.14 3.46
567 811 6.637254 CGTCTGCAATACTAACATCGTATTCT 59.363 38.462 0.00 0.00 35.88 2.40
583 827 1.301716 AAGCACGTCCGTCTGCAAT 60.302 52.632 5.31 0.00 0.00 3.56
585 829 2.661537 CAAGCACGTCCGTCTGCA 60.662 61.111 5.31 0.00 0.00 4.41
598 842 2.487934 TCAGCTTCAGAACTCACAAGC 58.512 47.619 5.06 5.06 41.38 4.01
599 843 4.333649 TGTTTCAGCTTCAGAACTCACAAG 59.666 41.667 0.00 0.00 0.00 3.16
600 844 4.094887 GTGTTTCAGCTTCAGAACTCACAA 59.905 41.667 11.45 0.00 33.86 3.33
601 845 3.623060 GTGTTTCAGCTTCAGAACTCACA 59.377 43.478 11.45 1.75 33.86 3.58
602 846 3.002759 GGTGTTTCAGCTTCAGAACTCAC 59.997 47.826 9.38 9.38 33.39 3.51
603 847 3.206150 GGTGTTTCAGCTTCAGAACTCA 58.794 45.455 0.00 0.00 0.00 3.41
604 848 3.206150 TGGTGTTTCAGCTTCAGAACTC 58.794 45.455 0.00 0.00 32.61 3.01
605 849 3.281727 TGGTGTTTCAGCTTCAGAACT 57.718 42.857 0.00 0.00 32.61 3.01
606 850 4.276926 AGATTGGTGTTTCAGCTTCAGAAC 59.723 41.667 0.00 0.00 32.61 3.01
607 851 4.464008 AGATTGGTGTTTCAGCTTCAGAA 58.536 39.130 0.00 0.00 32.61 3.02
608 852 4.090761 AGATTGGTGTTTCAGCTTCAGA 57.909 40.909 0.00 0.00 32.61 3.27
609 853 4.037208 ACAAGATTGGTGTTTCAGCTTCAG 59.963 41.667 0.00 0.00 32.61 3.02
610 854 3.953612 ACAAGATTGGTGTTTCAGCTTCA 59.046 39.130 0.00 0.00 32.61 3.02
611 855 4.574599 ACAAGATTGGTGTTTCAGCTTC 57.425 40.909 0.00 0.00 32.61 3.86
612 856 4.646492 AGAACAAGATTGGTGTTTCAGCTT 59.354 37.500 0.00 0.00 39.29 3.74
613 857 4.210331 AGAACAAGATTGGTGTTTCAGCT 58.790 39.130 0.00 0.00 39.29 4.24
614 858 4.574599 AGAACAAGATTGGTGTTTCAGC 57.425 40.909 0.00 0.00 39.29 4.26
615 859 7.496529 TCTAAGAACAAGATTGGTGTTTCAG 57.503 36.000 0.00 0.00 39.29 3.02
616 860 7.040478 CCATCTAAGAACAAGATTGGTGTTTCA 60.040 37.037 0.00 0.00 39.29 2.69
617 861 7.174946 TCCATCTAAGAACAAGATTGGTGTTTC 59.825 37.037 0.00 0.00 39.29 2.78
618 862 7.004086 TCCATCTAAGAACAAGATTGGTGTTT 58.996 34.615 0.00 0.00 39.29 2.83
619 863 6.542821 TCCATCTAAGAACAAGATTGGTGTT 58.457 36.000 0.00 0.00 41.84 3.32
620 864 6.126863 TCCATCTAAGAACAAGATTGGTGT 57.873 37.500 0.00 0.00 31.22 4.16
621 865 6.176183 ACTCCATCTAAGAACAAGATTGGTG 58.824 40.000 0.00 0.00 31.22 4.17
648 892 6.715718 AGAGTACTTTCTGCACTACTAACTGA 59.284 38.462 0.00 0.00 0.00 3.41
652 896 7.520451 TTGAGAGTACTTTCTGCACTACTAA 57.480 36.000 14.01 0.00 0.00 2.24
690 934 4.166144 TCAATTAGGACCCAAATCTCCTCC 59.834 45.833 0.00 0.00 38.01 4.30
758 1002 2.024319 GAGACGGACTGCACAGTGC 61.024 63.158 19.37 19.37 44.90 4.40
759 1003 1.730902 CGAGACGGACTGCACAGTG 60.731 63.158 8.27 0.00 42.66 3.66
760 1004 2.131294 GACGAGACGGACTGCACAGT 62.131 60.000 2.22 2.22 45.84 3.55
761 1005 1.442857 GACGAGACGGACTGCACAG 60.443 63.158 0.00 0.00 0.00 3.66
762 1006 2.643272 GACGAGACGGACTGCACA 59.357 61.111 0.00 0.00 0.00 4.57
770 1014 0.389426 AACGGAAATGGACGAGACGG 60.389 55.000 0.00 0.00 0.00 4.79
796 1040 2.048503 GTTCCGTCCCTGTCCGTG 60.049 66.667 0.00 0.00 0.00 4.94
837 1081 5.377478 TCTAAATCATAGGCTCGAGAGTGA 58.623 41.667 18.75 13.55 0.00 3.41
838 1082 5.697473 TCTAAATCATAGGCTCGAGAGTG 57.303 43.478 18.75 8.44 0.00 3.51
839 1083 4.217550 GCTCTAAATCATAGGCTCGAGAGT 59.782 45.833 18.75 4.19 33.32 3.24
840 1084 4.458989 AGCTCTAAATCATAGGCTCGAGAG 59.541 45.833 18.75 0.00 33.79 3.20
841 1085 4.402829 AGCTCTAAATCATAGGCTCGAGA 58.597 43.478 18.75 0.00 0.00 4.04
842 1086 4.217334 TGAGCTCTAAATCATAGGCTCGAG 59.783 45.833 16.19 8.45 46.03 4.04
862 1106 3.103738 GCGAATTAAAGCTGCATGTGAG 58.896 45.455 1.02 0.00 0.00 3.51
909 1153 2.757077 CGGAGAAGGCTTGGGGTT 59.243 61.111 3.46 0.00 0.00 4.11
964 1213 1.945169 CGCTCGATCTGCTCTGCTG 60.945 63.158 6.12 0.00 0.00 4.41
991 1245 1.541889 GCGATGATCCATTCCAGCTGA 60.542 52.381 17.39 0.00 0.00 4.26
996 1250 2.479837 GTAACGCGATGATCCATTCCA 58.520 47.619 15.93 0.00 0.00 3.53
1019 1279 1.019673 GCCGTGTTGATGCTCATCAT 58.980 50.000 12.72 0.00 46.12 2.45
1028 1288 3.133464 CGCCATGGCCGTGTTGAT 61.133 61.111 30.79 0.00 37.98 2.57
1029 1289 4.321966 TCGCCATGGCCGTGTTGA 62.322 61.111 30.79 17.82 37.98 3.18
1129 1389 2.158279 TGGATATGCGGTAGGGTTAGGA 60.158 50.000 0.00 0.00 0.00 2.94
1164 1424 2.263077 CGAGTTGACGAGGAATCAAGG 58.737 52.381 0.00 0.00 36.76 3.61
1165 1425 2.917971 GACGAGTTGACGAGGAATCAAG 59.082 50.000 0.00 0.00 36.76 3.02
1166 1426 2.295070 TGACGAGTTGACGAGGAATCAA 59.705 45.455 0.00 0.00 37.03 2.57
1187 1447 2.625790 GAGTGATCTATTCTCCCACGCT 59.374 50.000 0.00 0.00 33.37 5.07
1188 1448 2.288518 GGAGTGATCTATTCTCCCACGC 60.289 54.545 12.43 0.00 41.09 5.34
1189 1449 3.226777 AGGAGTGATCTATTCTCCCACG 58.773 50.000 16.84 0.00 46.15 4.94
1197 1457 4.383118 CGTTGGACCAAGGAGTGATCTATT 60.383 45.833 20.03 0.00 31.88 1.73
1201 1461 1.726853 CGTTGGACCAAGGAGTGATC 58.273 55.000 20.03 0.00 31.88 2.92
1204 1464 1.966451 GGCGTTGGACCAAGGAGTG 60.966 63.158 27.08 8.22 31.88 3.51
1205 1465 2.430367 GGCGTTGGACCAAGGAGT 59.570 61.111 27.08 0.00 31.88 3.85
1206 1466 2.359975 GGGCGTTGGACCAAGGAG 60.360 66.667 27.08 13.98 42.95 3.69
1212 1472 1.017701 CGAGTTTAGGGCGTTGGACC 61.018 60.000 0.00 0.00 44.27 4.46
1213 1473 0.037975 TCGAGTTTAGGGCGTTGGAC 60.038 55.000 0.00 0.00 0.00 4.02
1214 1474 0.037975 GTCGAGTTTAGGGCGTTGGA 60.038 55.000 0.00 0.00 0.00 3.53
1215 1475 0.320073 TGTCGAGTTTAGGGCGTTGG 60.320 55.000 0.00 0.00 0.00 3.77
1216 1476 1.068474 CTGTCGAGTTTAGGGCGTTG 58.932 55.000 0.00 0.00 0.00 4.10
1217 1477 0.037605 CCTGTCGAGTTTAGGGCGTT 60.038 55.000 0.00 0.00 0.00 4.84
1218 1478 0.896940 TCCTGTCGAGTTTAGGGCGT 60.897 55.000 0.00 0.00 32.39 5.68
1219 1479 0.460311 ATCCTGTCGAGTTTAGGGCG 59.540 55.000 0.00 0.00 32.39 6.13
1220 1480 2.678336 CAAATCCTGTCGAGTTTAGGGC 59.322 50.000 0.00 0.00 32.39 5.19
1221 1481 2.678336 GCAAATCCTGTCGAGTTTAGGG 59.322 50.000 0.00 0.00 32.39 3.53
1222 1482 2.348666 CGCAAATCCTGTCGAGTTTAGG 59.651 50.000 0.00 0.00 0.00 2.69
1223 1483 2.222819 GCGCAAATCCTGTCGAGTTTAG 60.223 50.000 0.30 0.00 0.00 1.85
1224 1484 1.730064 GCGCAAATCCTGTCGAGTTTA 59.270 47.619 0.30 0.00 0.00 2.01
1225 1485 0.517316 GCGCAAATCCTGTCGAGTTT 59.483 50.000 0.30 0.00 0.00 2.66
1226 1486 0.320771 AGCGCAAATCCTGTCGAGTT 60.321 50.000 11.47 0.00 0.00 3.01
1227 1487 0.530744 TAGCGCAAATCCTGTCGAGT 59.469 50.000 11.47 0.00 0.00 4.18
1228 1488 0.924090 GTAGCGCAAATCCTGTCGAG 59.076 55.000 11.47 0.00 0.00 4.04
1229 1489 0.530744 AGTAGCGCAAATCCTGTCGA 59.469 50.000 11.47 0.00 0.00 4.20
1230 1490 0.647410 CAGTAGCGCAAATCCTGTCG 59.353 55.000 11.47 0.00 0.00 4.35
1231 1491 1.726853 ACAGTAGCGCAAATCCTGTC 58.273 50.000 11.47 0.00 30.94 3.51
1232 1492 3.543680 ATACAGTAGCGCAAATCCTGT 57.456 42.857 11.47 15.37 39.53 4.00
1233 1493 4.368315 TGTATACAGTAGCGCAAATCCTG 58.632 43.478 11.47 10.08 0.00 3.86
1234 1494 4.665833 TGTATACAGTAGCGCAAATCCT 57.334 40.909 11.47 0.00 0.00 3.24
1235 1495 4.318831 GCTTGTATACAGTAGCGCAAATCC 60.319 45.833 11.47 0.00 0.00 3.01
1236 1496 4.318831 GGCTTGTATACAGTAGCGCAAATC 60.319 45.833 18.73 5.03 32.10 2.17
1237 1497 3.560068 GGCTTGTATACAGTAGCGCAAAT 59.440 43.478 18.73 0.00 32.10 2.32
1238 1498 2.933906 GGCTTGTATACAGTAGCGCAAA 59.066 45.455 18.73 0.00 32.10 3.68
1239 1499 2.093921 TGGCTTGTATACAGTAGCGCAA 60.094 45.455 18.73 8.17 32.10 4.85
1240 1500 1.478916 TGGCTTGTATACAGTAGCGCA 59.521 47.619 18.73 15.50 32.10 6.09
1241 1501 2.218953 TGGCTTGTATACAGTAGCGC 57.781 50.000 18.73 13.72 32.10 5.92
1242 1502 6.390721 AGATTATGGCTTGTATACAGTAGCG 58.609 40.000 18.73 4.40 32.10 4.26
1243 1503 9.877178 ATTAGATTATGGCTTGTATACAGTAGC 57.123 33.333 17.66 17.66 0.00 3.58
1247 1507 9.601217 GGGTATTAGATTATGGCTTGTATACAG 57.399 37.037 5.56 2.17 0.00 2.74
1248 1508 9.106977 TGGGTATTAGATTATGGCTTGTATACA 57.893 33.333 0.08 0.08 0.00 2.29
1249 1509 9.953565 TTGGGTATTAGATTATGGCTTGTATAC 57.046 33.333 0.00 0.00 0.00 1.47
1269 1529 4.873259 CGTGTCATTGTGTCATATTGGGTA 59.127 41.667 0.00 0.00 0.00 3.69
1289 1561 6.093771 ACAGTACTGTTTCTACTCTATCCGTG 59.906 42.308 22.95 0.00 41.83 4.94
1307 1579 5.587443 GGTGTGTACTTTGGAAAACAGTACT 59.413 40.000 9.47 0.00 42.31 2.73
1308 1580 5.220912 GGGTGTGTACTTTGGAAAACAGTAC 60.221 44.000 0.00 0.00 42.20 2.73
1309 1581 4.883006 GGGTGTGTACTTTGGAAAACAGTA 59.117 41.667 0.00 0.00 0.00 2.74
1316 1588 1.847737 ACAGGGGTGTGTACTTTGGAA 59.152 47.619 0.00 0.00 0.00 3.53
1328 1600 1.674057 GAGGACAGTGACAGGGGTG 59.326 63.158 0.00 0.00 0.00 4.61
1460 1772 2.996631 AGATTGGAGTGCTGATTGGAC 58.003 47.619 0.00 0.00 37.27 4.02
1515 1907 3.674955 GCCGATATGTACGATGCATGGTA 60.675 47.826 16.59 16.59 0.00 3.25
1542 1936 5.374921 CTCGTAGAATAGACCTCCCAAGTA 58.625 45.833 0.00 0.00 34.09 2.24
1543 1937 4.208746 CTCGTAGAATAGACCTCCCAAGT 58.791 47.826 0.00 0.00 34.09 3.16
1544 1938 3.570550 CCTCGTAGAATAGACCTCCCAAG 59.429 52.174 0.00 0.00 34.09 3.61
1546 1940 2.512896 ACCTCGTAGAATAGACCTCCCA 59.487 50.000 0.00 0.00 34.09 4.37
1547 1941 3.148412 GACCTCGTAGAATAGACCTCCC 58.852 54.545 0.00 0.00 34.09 4.30
1548 1942 2.807392 CGACCTCGTAGAATAGACCTCC 59.193 54.545 0.00 0.00 34.09 4.30
1549 1943 2.807392 CCGACCTCGTAGAATAGACCTC 59.193 54.545 0.00 0.00 37.74 3.85
1550 1944 2.437281 TCCGACCTCGTAGAATAGACCT 59.563 50.000 0.00 0.00 37.74 3.85
1563 1957 3.149005 ACATCTCTATCCTCCGACCTC 57.851 52.381 0.00 0.00 0.00 3.85
1647 2041 5.308825 AGGCCCAATCTTAAGATTACATCG 58.691 41.667 26.34 15.45 42.41 3.84
1676 2070 6.715347 AAAAACAGAGCAACAACCTAAGAT 57.285 33.333 0.00 0.00 0.00 2.40
1677 2071 6.826741 AGTAAAAACAGAGCAACAACCTAAGA 59.173 34.615 0.00 0.00 0.00 2.10
1678 2072 7.027778 AGTAAAAACAGAGCAACAACCTAAG 57.972 36.000 0.00 0.00 0.00 2.18
1854 2250 1.946768 ACTGGTGGATTGTTGTCGTTG 59.053 47.619 0.00 0.00 0.00 4.10
1855 2251 2.341846 ACTGGTGGATTGTTGTCGTT 57.658 45.000 0.00 0.00 0.00 3.85
1857 2253 2.217750 TCAACTGGTGGATTGTTGTCG 58.782 47.619 0.00 0.00 41.05 4.35
1858 2254 4.074970 AGATCAACTGGTGGATTGTTGTC 58.925 43.478 0.00 0.00 41.05 3.18
2011 2408 3.112205 GCCGGAGATGGAGCCATGT 62.112 63.158 5.05 2.24 36.70 3.21
2206 2631 7.551262 ACCTAGCTAGTACGAGAGATCAATATG 59.449 40.741 19.31 0.28 0.00 1.78
2220 2645 6.789262 TCAATCAAACGTACCTAGCTAGTAC 58.211 40.000 19.31 17.89 37.35 2.73
2231 2656 3.612860 ACAGCTCGATCAATCAAACGTAC 59.387 43.478 0.00 0.00 0.00 3.67
2242 2699 3.134623 ACCCATGATTAACAGCTCGATCA 59.865 43.478 0.00 0.00 33.50 2.92
2250 2867 5.243730 ACCAAGACAAACCCATGATTAACAG 59.756 40.000 0.00 0.00 0.00 3.16
2258 2875 1.604604 ACGACCAAGACAAACCCATG 58.395 50.000 0.00 0.00 0.00 3.66
2267 6122 2.934553 GGCAACCTATAACGACCAAGAC 59.065 50.000 0.00 0.00 0.00 3.01
2308 6163 0.738975 CTCAAGTCTATCACCGCCGA 59.261 55.000 0.00 0.00 0.00 5.54
2337 6192 1.599071 CGGATGTCGCAGTTTGCATAT 59.401 47.619 1.69 0.00 45.36 1.78
2373 6228 0.910338 AGCTCTGCATGATGTCCAGT 59.090 50.000 0.00 0.00 0.00 4.00
2424 6279 1.491668 ACATGTAGGGCACGTGGATA 58.508 50.000 18.88 0.00 46.73 2.59
2475 6330 7.378966 ACTTCTTCTTTGTCTTGTCATCGATA 58.621 34.615 0.00 0.00 0.00 2.92
2511 6366 1.069204 GCATCGAGGTCCTTATCAGCA 59.931 52.381 0.00 0.00 0.00 4.41
2519 6374 4.148825 GCGTGGCATCGAGGTCCT 62.149 66.667 12.46 0.00 0.00 3.85
2535 6390 1.429148 CGTCAATGGCGTCCCTTAGC 61.429 60.000 0.00 0.00 0.00 3.09
2538 6393 1.079127 CTCGTCAATGGCGTCCCTT 60.079 57.895 7.25 0.00 0.00 3.95
2539 6394 2.227089 GACTCGTCAATGGCGTCCCT 62.227 60.000 7.25 0.00 0.00 4.20
2573 6428 0.096976 CTTGAGTTTGCCGCCGTATG 59.903 55.000 0.00 0.00 0.00 2.39
2586 6441 9.196139 GATCTATTGTATCCCTATAGCTTGAGT 57.804 37.037 0.00 0.00 31.38 3.41
2601 6456 8.284945 ACTTGCACAACATTGATCTATTGTAT 57.715 30.769 0.00 0.00 33.59 2.29
2610 6465 4.082408 CAGATGGACTTGCACAACATTGAT 60.082 41.667 0.00 0.00 0.00 2.57
2681 6536 0.179015 TCTAGCTAGGCTCCACCGAG 60.179 60.000 20.58 0.00 46.52 4.63
2696 6551 3.553922 GGATTGTCGCTTCTCCCATCTAG 60.554 52.174 0.00 0.00 0.00 2.43
2697 6552 2.365617 GGATTGTCGCTTCTCCCATCTA 59.634 50.000 0.00 0.00 0.00 1.98
2698 6553 1.139853 GGATTGTCGCTTCTCCCATCT 59.860 52.381 0.00 0.00 0.00 2.90
2699 6554 1.139853 AGGATTGTCGCTTCTCCCATC 59.860 52.381 0.00 0.00 0.00 3.51
2703 6558 2.699954 TGAAAGGATTGTCGCTTCTCC 58.300 47.619 0.00 0.00 0.00 3.71
2729 6584 2.202756 GCGGTGAGTCGATGTCCC 60.203 66.667 0.00 0.00 0.00 4.46
2733 6588 0.733150 TAGACTGCGGTGAGTCGATG 59.267 55.000 0.80 0.00 46.04 3.84
2746 6601 7.548427 CCTCATATGGCATTTATGTCTAGACTG 59.452 40.741 23.01 13.58 32.56 3.51
2780 6635 5.886960 AGGATTCACTCATAGCAAAACAC 57.113 39.130 0.00 0.00 0.00 3.32
2870 6808 7.258022 TGTGGATGTGTATGTACAATATTGC 57.742 36.000 15.48 0.83 38.04 3.56
2876 6814 6.989759 GGATACATGTGGATGTGTATGTACAA 59.010 38.462 9.11 0.00 43.03 2.41
2891 6829 3.862877 TCAGAATGGGGGATACATGTG 57.137 47.619 9.11 0.00 36.16 3.21
2893 6831 5.638133 AGATTTCAGAATGGGGGATACATG 58.362 41.667 0.00 0.00 36.16 3.21
2894 6832 5.937492 AGATTTCAGAATGGGGGATACAT 57.063 39.130 0.00 0.00 36.16 2.29
2895 6833 6.183361 CCTTAGATTTCAGAATGGGGGATACA 60.183 42.308 0.00 0.00 36.16 2.29
2896 6834 6.241645 CCTTAGATTTCAGAATGGGGGATAC 58.758 44.000 0.00 0.00 36.16 2.24
2898 6836 4.448347 GCCTTAGATTTCAGAATGGGGGAT 60.448 45.833 0.00 0.00 36.16 3.85
2963 6920 0.457035 CGGTTGCCTTCCATCCATTG 59.543 55.000 0.00 0.00 33.66 2.82
2965 6922 1.754234 GCGGTTGCCTTCCATCCAT 60.754 57.895 0.00 0.00 33.66 3.41
2970 6927 2.904866 GTGTGCGGTTGCCTTCCA 60.905 61.111 0.00 0.00 41.78 3.53
2972 6929 2.594592 AGGTGTGCGGTTGCCTTC 60.595 61.111 0.00 0.00 41.78 3.46
2999 6956 4.630894 AACAACATCTTTTGAGCGTGAA 57.369 36.364 0.00 0.00 0.00 3.18
3003 6961 6.831769 AGTATGTAACAACATCTTTTGAGCG 58.168 36.000 0.00 0.00 0.00 5.03
3020 6978 3.244215 CCGGACGGAGGTAGTAGTATGTA 60.244 52.174 4.40 0.00 37.50 2.29
3021 6979 2.486191 CCGGACGGAGGTAGTAGTATGT 60.486 54.545 4.40 0.00 37.50 2.29
3023 6981 1.072965 CCCGGACGGAGGTAGTAGTAT 59.927 57.143 13.13 0.00 37.50 2.12
3026 6984 2.192187 GCCCGGACGGAGGTAGTAG 61.192 68.421 13.13 0.00 37.50 2.57
3036 7033 2.900337 GCCCAATAAGCCCGGACG 60.900 66.667 0.73 0.00 0.00 4.79
3044 7041 2.951229 ATACGAAGGGGCCCAATAAG 57.049 50.000 27.72 13.03 0.00 1.73
3051 7048 2.500352 CCCAAAATACGAAGGGGCC 58.500 57.895 0.00 0.00 37.66 5.80
3055 7052 4.138487 AGTCTAGCCCAAAATACGAAGG 57.862 45.455 0.00 0.00 0.00 3.46
3059 7056 4.094442 GGTCAAAGTCTAGCCCAAAATACG 59.906 45.833 0.00 0.00 0.00 3.06
3106 7103 2.108970 GAAATGGACGGAGGGAGTACT 58.891 52.381 0.00 0.00 0.00 2.73
3107 7104 2.101082 GAGAAATGGACGGAGGGAGTAC 59.899 54.545 0.00 0.00 0.00 2.73
3108 7105 2.385803 GAGAAATGGACGGAGGGAGTA 58.614 52.381 0.00 0.00 0.00 2.59
3109 7106 1.196012 GAGAAATGGACGGAGGGAGT 58.804 55.000 0.00 0.00 0.00 3.85
3110 7107 0.466124 GGAGAAATGGACGGAGGGAG 59.534 60.000 0.00 0.00 0.00 4.30
3111 7108 1.327690 CGGAGAAATGGACGGAGGGA 61.328 60.000 0.00 0.00 0.00 4.20
3112 7109 1.144057 CGGAGAAATGGACGGAGGG 59.856 63.158 0.00 0.00 0.00 4.30
3113 7110 0.179108 GTCGGAGAAATGGACGGAGG 60.179 60.000 0.00 0.00 39.69 4.30
3114 7111 0.530744 TGTCGGAGAAATGGACGGAG 59.469 55.000 0.00 0.00 39.69 4.63
3115 7112 0.970640 TTGTCGGAGAAATGGACGGA 59.029 50.000 0.00 0.00 39.69 4.69
3116 7113 1.337823 ACTTGTCGGAGAAATGGACGG 60.338 52.381 0.00 0.00 39.69 4.79
3117 7114 2.080286 ACTTGTCGGAGAAATGGACG 57.920 50.000 0.00 0.00 39.69 4.79
3118 7115 5.064834 GGAAATACTTGTCGGAGAAATGGAC 59.935 44.000 0.00 0.00 39.69 4.02
3119 7116 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
3120 7117 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3121 7118 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3122 7119 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3123 7120 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3124 7121 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3125 7122 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3126 7123 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3127 7124 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3128 7125 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3129 7126 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3130 7127 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3131 7128 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3132 7129 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3133 7130 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3134 7131 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3135 7132 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3136 7133 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3137 7134 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3138 7135 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3139 7136 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3140 7137 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
3141 7138 1.174783 CATATACTCCCTCCGTCCGG 58.825 60.000 0.00 0.00 0.00 5.14
3142 7139 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
3143 7140 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
3144 7141 3.825014 TGTTAGCATATACTCCCTCCGTC 59.175 47.826 0.00 0.00 0.00 4.79
3145 7142 3.840991 TGTTAGCATATACTCCCTCCGT 58.159 45.455 0.00 0.00 0.00 4.69
3146 7143 4.866508 TTGTTAGCATATACTCCCTCCG 57.133 45.455 0.00 0.00 0.00 4.63
3147 7144 9.740710 ATAATTTTGTTAGCATATACTCCCTCC 57.259 33.333 0.00 0.00 0.00 4.30
3263 7261 5.136220 AGGCCCCTCTTATTTTAGGCTAAAT 59.864 40.000 19.65 12.32 40.32 1.40
3271 7269 7.299896 GGGTTTATTAGGCCCCTCTTATTTTA 58.700 38.462 0.00 0.00 36.46 1.52
3297 7295 5.128919 TCTCTACAAATACTACCTCCGTCC 58.871 45.833 0.00 0.00 0.00 4.79
3300 7298 6.765036 TGTACTCTCTACAAATACTACCTCCG 59.235 42.308 0.00 0.00 0.00 4.63
3302 7300 9.339850 TGATGTACTCTCTACAAATACTACCTC 57.660 37.037 0.00 0.00 0.00 3.85
3303 7301 9.696572 TTGATGTACTCTCTACAAATACTACCT 57.303 33.333 0.00 0.00 0.00 3.08
3351 7349 9.918630 CCTCACAAAATTCATTTTCATCTTACT 57.081 29.630 0.00 0.00 37.86 2.24
3352 7350 9.696917 ACCTCACAAAATTCATTTTCATCTTAC 57.303 29.630 0.00 0.00 37.86 2.34
3353 7351 9.695526 CACCTCACAAAATTCATTTTCATCTTA 57.304 29.630 0.00 0.00 37.86 2.10
3354 7352 7.658575 CCACCTCACAAAATTCATTTTCATCTT 59.341 33.333 0.00 0.00 37.86 2.40
3355 7353 7.015487 TCCACCTCACAAAATTCATTTTCATCT 59.985 33.333 0.00 0.00 37.86 2.90
3356 7354 7.153985 TCCACCTCACAAAATTCATTTTCATC 58.846 34.615 0.00 0.00 37.86 2.92
3357 7355 7.065120 TCCACCTCACAAAATTCATTTTCAT 57.935 32.000 0.00 0.00 37.86 2.57
3358 7356 6.477053 TCCACCTCACAAAATTCATTTTCA 57.523 33.333 0.00 0.00 37.86 2.69
3359 7357 7.784633 TTTCCACCTCACAAAATTCATTTTC 57.215 32.000 0.00 0.00 37.86 2.29
3361 7359 9.439500 CATATTTCCACCTCACAAAATTCATTT 57.561 29.630 0.00 0.00 0.00 2.32
3362 7360 8.596293 ACATATTTCCACCTCACAAAATTCATT 58.404 29.630 0.00 0.00 0.00 2.57
3363 7361 8.137745 ACATATTTCCACCTCACAAAATTCAT 57.862 30.769 0.00 0.00 0.00 2.57
3364 7362 7.232330 TGACATATTTCCACCTCACAAAATTCA 59.768 33.333 0.00 0.00 0.00 2.57
3365 7363 7.542130 GTGACATATTTCCACCTCACAAAATTC 59.458 37.037 0.00 0.00 0.00 2.17
3366 7364 7.015098 TGTGACATATTTCCACCTCACAAAATT 59.985 33.333 0.00 0.00 36.08 1.82
3367 7365 6.493115 TGTGACATATTTCCACCTCACAAAAT 59.507 34.615 0.00 0.00 36.08 1.82
3368 7366 5.830457 TGTGACATATTTCCACCTCACAAAA 59.170 36.000 0.00 0.00 36.08 2.44
3369 7367 5.380900 TGTGACATATTTCCACCTCACAAA 58.619 37.500 0.00 0.00 36.08 2.83
3370 7368 4.979335 TGTGACATATTTCCACCTCACAA 58.021 39.130 0.00 0.00 36.08 3.33
3371 7369 4.285775 TCTGTGACATATTTCCACCTCACA 59.714 41.667 0.00 0.00 36.53 3.58
3372 7370 4.832248 TCTGTGACATATTTCCACCTCAC 58.168 43.478 0.00 0.00 0.00 3.51
3373 7371 4.080919 CCTCTGTGACATATTTCCACCTCA 60.081 45.833 0.00 0.00 0.00 3.86
3374 7372 4.162320 TCCTCTGTGACATATTTCCACCTC 59.838 45.833 0.00 0.00 0.00 3.85
3375 7373 4.080863 GTCCTCTGTGACATATTTCCACCT 60.081 45.833 0.00 0.00 35.29 4.00
3376 7374 4.192317 GTCCTCTGTGACATATTTCCACC 58.808 47.826 0.00 0.00 35.29 4.61
3377 7375 4.631813 GTGTCCTCTGTGACATATTTCCAC 59.368 45.833 6.18 0.00 46.20 4.02
3378 7376 4.285775 TGTGTCCTCTGTGACATATTTCCA 59.714 41.667 6.18 0.00 46.20 3.53
3379 7377 4.832248 TGTGTCCTCTGTGACATATTTCC 58.168 43.478 6.18 0.00 46.20 3.13
3380 7378 6.801539 TTTGTGTCCTCTGTGACATATTTC 57.198 37.500 6.18 0.00 46.20 2.17
3381 7379 7.765695 AATTTGTGTCCTCTGTGACATATTT 57.234 32.000 6.18 0.71 46.20 1.40
3382 7380 8.862325 TTAATTTGTGTCCTCTGTGACATATT 57.138 30.769 6.18 0.00 46.20 1.28
3383 7381 9.113838 GATTAATTTGTGTCCTCTGTGACATAT 57.886 33.333 6.18 0.00 46.20 1.78
3384 7382 8.100164 TGATTAATTTGTGTCCTCTGTGACATA 58.900 33.333 6.18 2.02 46.20 2.29
3385 7383 6.942005 TGATTAATTTGTGTCCTCTGTGACAT 59.058 34.615 6.18 0.00 46.20 3.06
3386 7384 6.295249 TGATTAATTTGTGTCCTCTGTGACA 58.705 36.000 0.00 0.00 42.75 3.58
3387 7385 6.801539 TGATTAATTTGTGTCCTCTGTGAC 57.198 37.500 0.00 0.00 35.77 3.67
3388 7386 8.408043 AAATGATTAATTTGTGTCCTCTGTGA 57.592 30.769 0.00 0.00 37.09 3.58
3389 7387 9.480053 AAAAATGATTAATTTGTGTCCTCTGTG 57.520 29.630 0.00 0.00 38.52 3.66
3412 7410 0.260230 TGTGACTGCCCCAGGAAAAA 59.740 50.000 0.00 0.00 35.51 1.94
3413 7411 0.178992 CTGTGACTGCCCCAGGAAAA 60.179 55.000 0.00 0.00 35.51 2.29
3414 7412 1.352622 ACTGTGACTGCCCCAGGAAA 61.353 55.000 0.00 0.00 35.51 3.13
3415 7413 1.768684 GACTGTGACTGCCCCAGGAA 61.769 60.000 0.00 0.00 35.51 3.36
3416 7414 2.122413 ACTGTGACTGCCCCAGGA 60.122 61.111 0.00 0.00 35.51 3.86
3417 7415 2.177594 GAGACTGTGACTGCCCCAGG 62.178 65.000 0.00 0.00 35.51 4.45
3418 7416 1.294780 GAGACTGTGACTGCCCCAG 59.705 63.158 0.00 0.00 37.52 4.45
3419 7417 1.459348 TGAGACTGTGACTGCCCCA 60.459 57.895 0.00 0.00 0.00 4.96
3420 7418 1.004440 GTGAGACTGTGACTGCCCC 60.004 63.158 0.00 0.00 0.00 5.80
3421 7419 0.320247 CTGTGAGACTGTGACTGCCC 60.320 60.000 0.00 0.00 0.00 5.36
3422 7420 0.676184 TCTGTGAGACTGTGACTGCC 59.324 55.000 0.00 0.00 0.00 4.85
3423 7421 2.739885 ATCTGTGAGACTGTGACTGC 57.260 50.000 0.00 0.00 0.00 4.40
3424 7422 4.926238 GGTTAATCTGTGAGACTGTGACTG 59.074 45.833 0.00 0.00 0.00 3.51
3425 7423 4.588951 TGGTTAATCTGTGAGACTGTGACT 59.411 41.667 0.00 0.00 0.00 3.41
3426 7424 4.686554 GTGGTTAATCTGTGAGACTGTGAC 59.313 45.833 0.00 0.00 0.00 3.67
3427 7425 4.558697 CGTGGTTAATCTGTGAGACTGTGA 60.559 45.833 0.00 0.00 0.00 3.58
3428 7426 3.675225 CGTGGTTAATCTGTGAGACTGTG 59.325 47.826 0.00 0.00 0.00 3.66
3429 7427 3.321111 ACGTGGTTAATCTGTGAGACTGT 59.679 43.478 0.00 0.00 0.00 3.55
3430 7428 3.675225 CACGTGGTTAATCTGTGAGACTG 59.325 47.826 7.95 0.00 32.39 3.51
3431 7429 3.321111 ACACGTGGTTAATCTGTGAGACT 59.679 43.478 21.57 0.00 34.72 3.24
3432 7430 3.650139 ACACGTGGTTAATCTGTGAGAC 58.350 45.455 21.57 0.00 34.72 3.36
3433 7431 3.572682 AGACACGTGGTTAATCTGTGAGA 59.427 43.478 21.57 0.00 34.72 3.27
3434 7432 3.914312 AGACACGTGGTTAATCTGTGAG 58.086 45.455 21.57 0.00 34.72 3.51
3435 7433 4.304110 GAAGACACGTGGTTAATCTGTGA 58.696 43.478 21.57 0.00 34.72 3.58
3436 7434 3.432252 GGAAGACACGTGGTTAATCTGTG 59.568 47.826 21.57 9.30 36.64 3.66
3437 7435 3.556423 GGGAAGACACGTGGTTAATCTGT 60.556 47.826 21.57 4.34 0.00 3.41
3438 7436 3.000727 GGGAAGACACGTGGTTAATCTG 58.999 50.000 21.57 0.00 0.00 2.90
3439 7437 2.353406 CGGGAAGACACGTGGTTAATCT 60.353 50.000 21.57 10.20 38.21 2.40
3440 7438 1.997606 CGGGAAGACACGTGGTTAATC 59.002 52.381 21.57 7.79 38.21 1.75
3441 7439 1.619827 TCGGGAAGACACGTGGTTAAT 59.380 47.619 21.57 0.00 44.00 1.40
3442 7440 1.039068 TCGGGAAGACACGTGGTTAA 58.961 50.000 21.57 0.00 44.00 2.01
3443 7441 1.039068 TTCGGGAAGACACGTGGTTA 58.961 50.000 21.57 0.00 44.00 2.85
3444 7442 0.178533 TTTCGGGAAGACACGTGGTT 59.821 50.000 21.57 12.87 44.00 3.67
3445 7443 0.531311 GTTTCGGGAAGACACGTGGT 60.531 55.000 21.57 5.35 44.00 4.16
3446 7444 0.249741 AGTTTCGGGAAGACACGTGG 60.250 55.000 21.57 1.66 44.00 4.94
3447 7445 2.056577 GTAGTTTCGGGAAGACACGTG 58.943 52.381 15.48 15.48 44.00 4.49
3448 7446 1.000171 GGTAGTTTCGGGAAGACACGT 60.000 52.381 0.00 0.00 44.00 4.49
3449 7447 1.670967 GGGTAGTTTCGGGAAGACACG 60.671 57.143 0.00 0.00 45.08 4.49
3450 7448 1.345415 TGGGTAGTTTCGGGAAGACAC 59.655 52.381 0.00 0.00 0.00 3.67
3451 7449 1.345415 GTGGGTAGTTTCGGGAAGACA 59.655 52.381 0.00 0.00 0.00 3.41
3452 7450 1.670967 CGTGGGTAGTTTCGGGAAGAC 60.671 57.143 0.00 0.00 0.00 3.01
3453 7451 0.604578 CGTGGGTAGTTTCGGGAAGA 59.395 55.000 0.00 0.00 0.00 2.87
3454 7452 0.390735 CCGTGGGTAGTTTCGGGAAG 60.391 60.000 0.00 0.00 39.41 3.46
3455 7453 0.831288 TCCGTGGGTAGTTTCGGGAA 60.831 55.000 0.00 0.00 42.71 3.97
3456 7454 0.831288 TTCCGTGGGTAGTTTCGGGA 60.831 55.000 0.00 0.00 42.71 5.14
3470 7468 1.890489 GTAATTTTGGGCCACTTCCGT 59.110 47.619 5.23 0.00 0.00 4.69
3477 7475 0.600557 CTGCGTGTAATTTTGGGCCA 59.399 50.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.