Multiple sequence alignment - TraesCS5D01G537900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G537900 chr5D 100.000 3145 0 0 1 3145 550375505 550372361 0.000000e+00 5808.0
1 TraesCS5D01G537900 chr5D 85.402 1466 170 20 992 2447 550301065 550299634 0.000000e+00 1482.0
2 TraesCS5D01G537900 chr5D 84.687 1391 146 34 862 2217 550402717 550401359 0.000000e+00 1327.0
3 TraesCS5D01G537900 chr5D 81.884 138 15 7 248 378 550301966 550301832 1.190000e-19 108.0
4 TraesCS5D01G537900 chr5D 81.897 116 15 3 862 973 550301229 550301116 3.340000e-15 93.5
5 TraesCS5D01G537900 chr5B 91.107 2384 112 26 204 2527 702553480 702551137 0.000000e+00 3136.0
6 TraesCS5D01G537900 chr5B 85.482 1412 171 20 992 2392 702479408 702478020 0.000000e+00 1441.0
7 TraesCS5D01G537900 chr5B 81.942 1689 201 50 862 2501 702558067 702556434 0.000000e+00 1334.0
8 TraesCS5D01G537900 chr5B 92.945 326 17 5 2602 2923 702550961 702550638 1.320000e-128 470.0
9 TraesCS5D01G537900 chr5B 76.923 546 66 28 2611 3145 702556002 702555506 4.030000e-64 255.0
10 TraesCS5D01G537900 chr5B 82.482 137 13 5 248 378 702480257 702480126 3.320000e-20 110.0
11 TraesCS5D01G537900 chr5B 84.158 101 12 2 862 962 702479568 702479472 9.290000e-16 95.3
12 TraesCS5D01G537900 chr4A 88.514 2403 153 51 213 2527 617288155 617290522 0.000000e+00 2795.0
13 TraesCS5D01G537900 chr4A 88.468 2402 153 52 213 2525 617348224 617350590 0.000000e+00 2787.0
14 TraesCS5D01G537900 chr4A 86.760 1284 144 16 977 2243 617281504 617282778 0.000000e+00 1406.0
15 TraesCS5D01G537900 chr4A 84.902 1424 164 27 865 2249 617360181 617361592 0.000000e+00 1391.0
16 TraesCS5D01G537900 chr4A 91.259 286 13 5 2674 2956 617353177 617353453 2.290000e-101 379.0
17 TraesCS5D01G537900 chr4A 90.446 157 6 2 2530 2678 617350719 617350874 6.880000e-47 198.0
18 TraesCS5D01G537900 chr4A 80.841 214 18 12 2543 2747 617283180 617283379 2.530000e-31 147.0
19 TraesCS5D01G537900 chr4A 86.777 121 11 4 843 962 617281345 617281461 2.550000e-26 130.0
20 TraesCS5D01G537900 chr4A 100.000 31 0 0 699 729 617359676 617359706 1.220000e-04 58.4
21 TraesCS5D01G537900 chr1A 89.831 59 6 0 658 716 249773921 249773979 3.360000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G537900 chr5D 550372361 550375505 3144 True 5808.000000 5808 100.000000 1 3145 1 chr5D.!!$R1 3144
1 TraesCS5D01G537900 chr5D 550401359 550402717 1358 True 1327.000000 1327 84.687000 862 2217 1 chr5D.!!$R2 1355
2 TraesCS5D01G537900 chr5D 550299634 550301966 2332 True 561.166667 1482 83.061000 248 2447 3 chr5D.!!$R3 2199
3 TraesCS5D01G537900 chr5B 702550638 702558067 7429 True 1298.750000 3136 85.729250 204 3145 4 chr5B.!!$R2 2941
4 TraesCS5D01G537900 chr5B 702478020 702480257 2237 True 548.766667 1441 84.040667 248 2392 3 chr5B.!!$R1 2144
5 TraesCS5D01G537900 chr4A 617288155 617290522 2367 False 2795.000000 2795 88.514000 213 2527 1 chr4A.!!$F1 2314
6 TraesCS5D01G537900 chr4A 617348224 617353453 5229 False 1121.333333 2787 90.057667 213 2956 3 chr4A.!!$F3 2743
7 TraesCS5D01G537900 chr4A 617359676 617361592 1916 False 724.700000 1391 92.451000 699 2249 2 chr4A.!!$F4 1550
8 TraesCS5D01G537900 chr4A 617281345 617283379 2034 False 561.000000 1406 84.792667 843 2747 3 chr4A.!!$F2 1904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.108520 GGTAACGGATGCGTTGGAGA 60.109 55.0 31.69 11.77 33.8 3.71 F
1755 6697 0.318441 CTGGAAGTGTCGCTGAAGGA 59.682 55.0 0.00 0.00 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 6829 0.038744 CTCCACCATTGCCAGTTCCT 59.961 55.0 0.0 0.0 0.0 3.36 R
3033 10493 0.034896 TCAGTTTCTTGACGCCCTCC 59.965 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.559958 GTACAAAATGTAATGAATGTCTTCTGG 57.440 33.333 0.00 0.00 34.21 3.86
28 29 8.641541 ACAAAATGTAATGAATGTCTTCTGGTT 58.358 29.630 0.00 0.00 32.29 3.67
29 30 9.480053 CAAAATGTAATGAATGTCTTCTGGTTT 57.520 29.630 0.00 0.00 32.29 3.27
34 35 8.729756 TGTAATGAATGTCTTCTGGTTTATGTG 58.270 33.333 0.00 0.00 32.29 3.21
35 36 8.946085 GTAATGAATGTCTTCTGGTTTATGTGA 58.054 33.333 0.00 0.00 32.29 3.58
37 38 7.815840 TGAATGTCTTCTGGTTTATGTGAAA 57.184 32.000 0.00 0.00 32.29 2.69
38 39 8.408043 TGAATGTCTTCTGGTTTATGTGAAAT 57.592 30.769 0.00 0.00 32.29 2.17
39 40 8.514594 TGAATGTCTTCTGGTTTATGTGAAATC 58.485 33.333 0.00 0.00 32.29 2.17
40 41 6.817765 TGTCTTCTGGTTTATGTGAAATCC 57.182 37.500 0.00 0.00 0.00 3.01
42 43 4.394920 TCTTCTGGTTTATGTGAAATCCGC 59.605 41.667 0.00 0.00 0.00 5.54
44 45 3.016736 CTGGTTTATGTGAAATCCGCCT 58.983 45.455 0.00 0.00 0.00 5.52
45 46 3.426615 TGGTTTATGTGAAATCCGCCTT 58.573 40.909 0.00 0.00 0.00 4.35
46 47 3.192422 TGGTTTATGTGAAATCCGCCTTG 59.808 43.478 0.00 0.00 0.00 3.61
47 48 3.192633 GGTTTATGTGAAATCCGCCTTGT 59.807 43.478 0.00 0.00 0.00 3.16
48 49 4.321675 GGTTTATGTGAAATCCGCCTTGTT 60.322 41.667 0.00 0.00 0.00 2.83
50 51 2.791383 TGTGAAATCCGCCTTGTTTG 57.209 45.000 0.00 0.00 0.00 2.93
52 53 1.035923 TGAAATCCGCCTTGTTTGCA 58.964 45.000 0.00 0.00 0.00 4.08
53 54 1.617850 TGAAATCCGCCTTGTTTGCAT 59.382 42.857 0.00 0.00 0.00 3.96
54 55 2.822561 TGAAATCCGCCTTGTTTGCATA 59.177 40.909 0.00 0.00 0.00 3.14
55 56 3.256879 TGAAATCCGCCTTGTTTGCATAA 59.743 39.130 0.00 0.00 0.00 1.90
56 57 3.951775 AATCCGCCTTGTTTGCATAAA 57.048 38.095 0.00 0.00 0.00 1.40
57 58 4.470334 AATCCGCCTTGTTTGCATAAAT 57.530 36.364 0.00 0.00 0.00 1.40
58 59 3.951775 TCCGCCTTGTTTGCATAAATT 57.048 38.095 0.00 0.00 0.00 1.82
59 60 4.264460 TCCGCCTTGTTTGCATAAATTT 57.736 36.364 0.00 0.00 0.00 1.82
62 63 4.690280 CCGCCTTGTTTGCATAAATTTCTT 59.310 37.500 0.00 0.00 0.00 2.52
63 64 5.163963 CCGCCTTGTTTGCATAAATTTCTTC 60.164 40.000 0.00 0.00 0.00 2.87
64 65 5.163963 CGCCTTGTTTGCATAAATTTCTTCC 60.164 40.000 0.00 0.00 0.00 3.46
65 66 5.163963 GCCTTGTTTGCATAAATTTCTTCCG 60.164 40.000 0.00 0.00 0.00 4.30
66 67 5.348451 CCTTGTTTGCATAAATTTCTTCCGG 59.652 40.000 0.00 0.00 0.00 5.14
67 68 5.461032 TGTTTGCATAAATTTCTTCCGGT 57.539 34.783 0.00 0.00 0.00 5.28
68 69 5.848406 TGTTTGCATAAATTTCTTCCGGTT 58.152 33.333 0.00 0.00 0.00 4.44
71 72 8.091449 TGTTTGCATAAATTTCTTCCGGTTTAT 58.909 29.630 0.00 0.11 0.00 1.40
72 73 9.575783 GTTTGCATAAATTTCTTCCGGTTTATA 57.424 29.630 0.00 0.00 0.00 0.98
74 75 9.959749 TTGCATAAATTTCTTCCGGTTTATATC 57.040 29.630 0.00 0.40 0.00 1.63
76 77 9.959749 GCATAAATTTCTTCCGGTTTATATCAA 57.040 29.630 0.00 0.00 0.00 2.57
83 84 7.801716 TCTTCCGGTTTATATCAAAATCCAG 57.198 36.000 0.00 0.00 0.00 3.86
86 87 4.274950 CCGGTTTATATCAAAATCCAGCGT 59.725 41.667 0.00 0.00 0.00 5.07
87 88 5.204833 CGGTTTATATCAAAATCCAGCGTG 58.795 41.667 0.00 0.00 0.00 5.34
89 90 6.560711 GGTTTATATCAAAATCCAGCGTGTT 58.439 36.000 0.00 0.00 0.00 3.32
90 91 7.033185 GGTTTATATCAAAATCCAGCGTGTTT 58.967 34.615 0.00 0.00 0.00 2.83
91 92 7.009174 GGTTTATATCAAAATCCAGCGTGTTTG 59.991 37.037 0.00 0.00 33.26 2.93
92 93 5.643379 ATATCAAAATCCAGCGTGTTTGT 57.357 34.783 0.00 0.00 33.62 2.83
93 94 6.751514 ATATCAAAATCCAGCGTGTTTGTA 57.248 33.333 0.00 0.00 33.62 2.41
94 95 4.217754 TCAAAATCCAGCGTGTTTGTAC 57.782 40.909 0.00 0.00 33.62 2.90
95 96 2.961522 AAATCCAGCGTGTTTGTACG 57.038 45.000 0.00 0.00 46.28 3.67
96 97 2.157834 AATCCAGCGTGTTTGTACGA 57.842 45.000 2.14 0.00 46.46 3.43
97 98 2.157834 ATCCAGCGTGTTTGTACGAA 57.842 45.000 2.14 0.00 46.46 3.85
98 99 2.157834 TCCAGCGTGTTTGTACGAAT 57.842 45.000 0.00 0.00 46.46 3.34
99 100 2.485903 TCCAGCGTGTTTGTACGAATT 58.514 42.857 0.00 0.00 46.46 2.17
100 101 2.477375 TCCAGCGTGTTTGTACGAATTC 59.523 45.455 0.00 0.00 46.46 2.17
101 102 2.412325 CCAGCGTGTTTGTACGAATTCC 60.412 50.000 0.00 0.00 46.46 3.01
102 103 1.458064 AGCGTGTTTGTACGAATTCCG 59.542 47.619 0.00 3.51 46.46 4.30
115 116 4.579270 CGAATTCCGTCTAGTTGGTTTC 57.421 45.455 0.00 6.97 0.00 2.78
116 117 3.991773 CGAATTCCGTCTAGTTGGTTTCA 59.008 43.478 0.00 0.00 0.00 2.69
117 118 4.449743 CGAATTCCGTCTAGTTGGTTTCAA 59.550 41.667 0.00 0.00 0.00 2.69
118 119 5.121768 CGAATTCCGTCTAGTTGGTTTCAAT 59.878 40.000 0.00 3.84 35.10 2.57
119 120 6.348213 CGAATTCCGTCTAGTTGGTTTCAATT 60.348 38.462 0.00 9.23 35.10 2.32
122 123 7.989416 TTCCGTCTAGTTGGTTTCAATTATT 57.011 32.000 3.50 0.00 35.10 1.40
124 125 6.938030 TCCGTCTAGTTGGTTTCAATTATTGT 59.062 34.615 4.77 0.00 35.10 2.71
125 126 7.118680 TCCGTCTAGTTGGTTTCAATTATTGTC 59.881 37.037 4.77 0.00 35.10 3.18
126 127 6.953743 CGTCTAGTTGGTTTCAATTATTGTCG 59.046 38.462 4.77 0.00 35.10 4.35
127 128 7.148705 CGTCTAGTTGGTTTCAATTATTGTCGA 60.149 37.037 4.77 0.00 35.10 4.20
128 129 8.500773 GTCTAGTTGGTTTCAATTATTGTCGAA 58.499 33.333 4.77 0.00 35.10 3.71
129 130 9.058174 TCTAGTTGGTTTCAATTATTGTCGAAA 57.942 29.630 4.77 0.00 35.10 3.46
130 131 9.840427 CTAGTTGGTTTCAATTATTGTCGAAAT 57.160 29.630 4.77 3.64 35.10 2.17
131 132 8.519492 AGTTGGTTTCAATTATTGTCGAAATG 57.481 30.769 4.77 0.00 35.10 2.32
136 137 8.531530 GGTTTCAATTATTGTCGAAATGTATGC 58.468 33.333 4.77 0.00 30.68 3.14
137 138 9.071221 GTTTCAATTATTGTCGAAATGTATGCA 57.929 29.630 4.77 0.00 30.68 3.96
139 140 8.207521 TCAATTATTGTCGAAATGTATGCAGA 57.792 30.769 4.77 0.00 0.00 4.26
140 141 8.839343 TCAATTATTGTCGAAATGTATGCAGAT 58.161 29.630 4.77 0.00 0.00 2.90
147 148 8.839947 TGTCGAAATGTATGCAGATAATTTTG 57.160 30.769 10.99 10.99 0.00 2.44
148 149 7.914871 TGTCGAAATGTATGCAGATAATTTTGG 59.085 33.333 14.71 8.05 0.00 3.28
149 150 8.128582 GTCGAAATGTATGCAGATAATTTTGGA 58.871 33.333 14.71 9.52 0.00 3.53
150 151 8.849168 TCGAAATGTATGCAGATAATTTTGGAT 58.151 29.630 14.71 0.00 0.00 3.41
160 161 9.412460 TGCAGATAATTTTGGATAACAATCTCT 57.588 29.630 0.00 0.00 39.21 3.10
169 170 9.436957 TTTTGGATAACAATCTCTTAGTCTCAC 57.563 33.333 0.00 0.00 39.21 3.51
171 172 8.311395 TGGATAACAATCTCTTAGTCTCACAT 57.689 34.615 0.00 0.00 0.00 3.21
172 173 8.417106 TGGATAACAATCTCTTAGTCTCACATC 58.583 37.037 0.00 0.00 0.00 3.06
174 175 5.255710 ACAATCTCTTAGTCTCACATCCG 57.744 43.478 0.00 0.00 0.00 4.18
175 176 4.707448 ACAATCTCTTAGTCTCACATCCGT 59.293 41.667 0.00 0.00 0.00 4.69
176 177 4.909696 ATCTCTTAGTCTCACATCCGTG 57.090 45.455 0.00 0.00 45.08 4.94
178 179 3.690139 TCTCTTAGTCTCACATCCGTGTC 59.310 47.826 0.00 0.00 44.02 3.67
179 180 2.753452 TCTTAGTCTCACATCCGTGTCC 59.247 50.000 0.00 0.00 44.02 4.02
180 181 1.092348 TAGTCTCACATCCGTGTCCG 58.908 55.000 0.00 0.00 44.02 4.79
182 183 2.880879 CTCACATCCGTGTCCGCG 60.881 66.667 0.00 0.00 44.02 6.46
190 191 3.740397 CGTGTCCGCGGACTGGTA 61.740 66.667 46.72 31.15 44.80 3.25
191 192 2.652530 GTGTCCGCGGACTGGTAA 59.347 61.111 46.72 30.80 44.80 2.85
192 193 1.735559 GTGTCCGCGGACTGGTAAC 60.736 63.158 46.72 35.58 44.80 2.50
193 194 2.505557 GTCCGCGGACTGGTAACG 60.506 66.667 43.32 8.23 41.57 3.18
203 204 4.287580 TGGTAACGGATGCGTTGG 57.712 55.556 31.69 0.00 42.51 3.77
204 205 1.672320 TGGTAACGGATGCGTTGGA 59.328 52.632 31.69 12.90 42.51 3.53
205 206 0.390603 TGGTAACGGATGCGTTGGAG 60.391 55.000 31.69 0.00 42.51 3.86
206 207 0.108520 GGTAACGGATGCGTTGGAGA 60.109 55.000 31.69 11.77 33.80 3.71
207 208 1.472728 GGTAACGGATGCGTTGGAGAT 60.473 52.381 31.69 9.86 33.80 2.75
208 209 1.593006 GTAACGGATGCGTTGGAGATG 59.407 52.381 31.69 0.00 33.80 2.90
209 210 1.369091 AACGGATGCGTTGGAGATGC 61.369 55.000 24.69 0.00 40.83 3.91
211 212 2.189499 GGATGCGTTGGAGATGCCC 61.189 63.158 0.00 0.00 39.64 5.36
217 4602 1.679032 GCGTTGGAGATGCCCTTAGTT 60.679 52.381 0.00 0.00 34.03 2.24
277 4663 5.999205 TGGAGACCATGTGCATTAATTTT 57.001 34.783 0.00 0.00 0.00 1.82
285 4671 5.289193 CCATGTGCATTAATTTTGGAAGTCG 59.711 40.000 0.00 0.00 0.00 4.18
288 4674 5.184864 TGTGCATTAATTTTGGAAGTCGGAT 59.815 36.000 0.00 0.00 0.00 4.18
298 4684 2.159476 TGGAAGTCGGATCTACGAAACG 60.159 50.000 0.00 0.00 45.38 3.60
299 4685 1.844962 GAAGTCGGATCTACGAAACGC 59.155 52.381 0.00 0.00 45.38 4.84
304 4690 1.547596 GATCTACGAAACGCGCGAC 59.452 57.895 39.36 24.21 46.04 5.19
433 4827 0.882042 CGATCCGGAGCTTTCCATGG 60.882 60.000 19.08 4.97 0.00 3.66
434 4828 1.152881 ATCCGGAGCTTTCCATGGC 60.153 57.895 11.34 0.00 0.00 4.40
435 4829 1.639635 ATCCGGAGCTTTCCATGGCT 61.640 55.000 11.34 0.00 41.88 4.75
436 4830 0.980754 TCCGGAGCTTTCCATGGCTA 60.981 55.000 6.96 0.00 39.05 3.93
455 4862 1.372748 GCCAGCTCGATCGATCCTG 60.373 63.158 26.53 26.53 0.00 3.86
634 5056 2.612567 GGTGTTTCGGCGATGCACA 61.613 57.895 30.68 22.47 0.00 4.57
928 5816 4.523173 TCAAAGGTACTACTGTCACTCTGG 59.477 45.833 0.00 0.00 38.49 3.86
962 5850 5.817816 ACTTCTCATCGAATAACCCATTCAC 59.182 40.000 0.00 0.00 42.86 3.18
968 5858 4.269183 TCGAATAACCCATTCACTGCATT 58.731 39.130 0.00 0.00 42.86 3.56
973 5863 2.726821 ACCCATTCACTGCATTACCAG 58.273 47.619 0.00 0.00 38.78 4.00
982 5872 2.038952 ACTGCATTACCAGAAGCACTCA 59.961 45.455 0.00 0.00 36.67 3.41
983 5873 3.276857 CTGCATTACCAGAAGCACTCAT 58.723 45.455 0.00 0.00 34.77 2.90
984 5874 3.011818 TGCATTACCAGAAGCACTCATG 58.988 45.455 0.00 0.00 31.05 3.07
1195 6137 4.791069 GAGGTGGCGGGGGAGGTA 62.791 72.222 0.00 0.00 0.00 3.08
1317 6259 2.781406 GGGTCTGGAGGAGGAGGT 59.219 66.667 0.00 0.00 0.00 3.85
1604 6546 2.168521 GCTACTCAGATGCTGGTGGTAA 59.831 50.000 0.00 0.00 31.51 2.85
1648 6590 1.700739 ACAACGGAAATGGAGGTGGTA 59.299 47.619 0.00 0.00 0.00 3.25
1755 6697 0.318441 CTGGAAGTGTCGCTGAAGGA 59.682 55.000 0.00 0.00 0.00 3.36
1762 6704 2.035442 GTCGCTGAAGGACCAAGCC 61.035 63.158 7.92 0.00 0.00 4.35
1792 6734 3.644606 CTGGTGCTGGGTCTGGCT 61.645 66.667 0.00 0.00 0.00 4.75
1887 6829 2.364970 CACTGGTGAAAGCCAAAATGGA 59.635 45.455 0.00 0.00 40.96 3.41
1914 6856 1.679977 CAATGGTGGAGGCAGTGGG 60.680 63.158 0.00 0.00 0.00 4.61
2047 6989 0.957395 GACATGGGGTGTGCACTGAG 60.957 60.000 19.41 3.65 42.36 3.35
2132 7078 2.124109 TGTTCAGGCGGGTTTGCA 60.124 55.556 0.00 0.00 36.28 4.08
2133 7079 1.526575 CTGTTCAGGCGGGTTTGCAT 61.527 55.000 0.00 0.00 36.28 3.96
2142 7088 1.742831 GCGGGTTTGCATCAATAGACA 59.257 47.619 0.00 0.00 34.15 3.41
2231 7188 2.228059 TCCGCCGTTTTGTTTCCAATA 58.772 42.857 0.00 0.00 0.00 1.90
2309 7268 3.223423 ACGAGAGTATGCAAGTCTGTG 57.777 47.619 9.93 6.20 46.88 3.66
2333 7292 5.877564 GGTTTTCTAGAGCTATGCAAACTCT 59.122 40.000 17.40 17.40 43.12 3.24
2355 7314 8.686334 ACTCTGACTTTGCTTTCTATTTGAAAA 58.314 29.630 0.00 0.00 43.25 2.29
2473 7440 7.977293 CACCATATTTATACCATTGGATGCATG 59.023 37.037 10.37 0.00 0.00 4.06
2568 7710 1.123928 AGAATTAGAGGACTGGGCGG 58.876 55.000 0.00 0.00 0.00 6.13
2590 7732 4.636206 GGACAAGCTATTGGTTCTTACCTG 59.364 45.833 0.00 0.00 45.27 4.00
2591 7733 5.488341 GACAAGCTATTGGTTCTTACCTGA 58.512 41.667 0.00 0.00 45.27 3.86
2592 7734 5.246307 ACAAGCTATTGGTTCTTACCTGAC 58.754 41.667 0.00 0.00 45.27 3.51
2735 10194 9.168451 TGATAGAGTTAGTTTAGAGACAGACAG 57.832 37.037 0.00 0.00 0.00 3.51
2750 10209 5.652014 AGACAGACAGAAAACCATGTGAAAA 59.348 36.000 0.00 0.00 0.00 2.29
2751 10210 5.894807 ACAGACAGAAAACCATGTGAAAAG 58.105 37.500 0.00 0.00 0.00 2.27
2752 10211 4.741676 CAGACAGAAAACCATGTGAAAAGC 59.258 41.667 0.00 0.00 0.00 3.51
2814 10273 7.495606 CACTCAAGTGGCATTGAACAGTATATA 59.504 37.037 11.59 0.00 42.10 0.86
2939 10399 6.767902 AGACTGCTTACAAGAAGAAATCAACA 59.232 34.615 3.88 0.00 35.12 3.33
2941 10401 7.196331 ACTGCTTACAAGAAGAAATCAACAAC 58.804 34.615 3.88 0.00 35.12 3.32
2944 10404 7.487829 TGCTTACAAGAAGAAATCAACAACAAC 59.512 33.333 0.00 0.00 0.00 3.32
2948 10408 8.600449 ACAAGAAGAAATCAACAACAACAAAA 57.400 26.923 0.00 0.00 0.00 2.44
2969 10429 4.810191 AAAGAACTAGATCGCTTCCTGT 57.190 40.909 0.00 0.00 0.00 4.00
2970 10430 3.791973 AGAACTAGATCGCTTCCTGTG 57.208 47.619 0.00 0.00 0.00 3.66
2971 10431 3.093057 AGAACTAGATCGCTTCCTGTGT 58.907 45.455 0.00 0.00 0.00 3.72
2972 10432 3.511934 AGAACTAGATCGCTTCCTGTGTT 59.488 43.478 0.00 0.00 0.00 3.32
2973 10433 4.705507 AGAACTAGATCGCTTCCTGTGTTA 59.294 41.667 0.00 0.00 0.00 2.41
2974 10434 4.373348 ACTAGATCGCTTCCTGTGTTAC 57.627 45.455 0.00 0.00 0.00 2.50
2975 10435 3.762288 ACTAGATCGCTTCCTGTGTTACA 59.238 43.478 0.00 0.00 0.00 2.41
2976 10436 3.895232 AGATCGCTTCCTGTGTTACAT 57.105 42.857 0.00 0.00 0.00 2.29
2977 10437 4.207891 AGATCGCTTCCTGTGTTACATT 57.792 40.909 0.00 0.00 0.00 2.71
2978 10438 5.339008 AGATCGCTTCCTGTGTTACATTA 57.661 39.130 0.00 0.00 0.00 1.90
2979 10439 5.352284 AGATCGCTTCCTGTGTTACATTAG 58.648 41.667 0.00 0.00 0.00 1.73
2980 10440 4.794278 TCGCTTCCTGTGTTACATTAGA 57.206 40.909 0.00 0.00 0.00 2.10
2981 10441 5.339008 TCGCTTCCTGTGTTACATTAGAT 57.661 39.130 0.00 0.00 0.00 1.98
2982 10442 5.730550 TCGCTTCCTGTGTTACATTAGATT 58.269 37.500 0.00 0.00 0.00 2.40
2983 10443 6.869695 TCGCTTCCTGTGTTACATTAGATTA 58.130 36.000 0.00 0.00 0.00 1.75
2984 10444 6.755141 TCGCTTCCTGTGTTACATTAGATTAC 59.245 38.462 0.00 0.00 0.00 1.89
2985 10445 6.018994 CGCTTCCTGTGTTACATTAGATTACC 60.019 42.308 0.00 0.00 0.00 2.85
2986 10446 6.821665 GCTTCCTGTGTTACATTAGATTACCA 59.178 38.462 0.00 0.00 0.00 3.25
2987 10447 7.499232 GCTTCCTGTGTTACATTAGATTACCAT 59.501 37.037 0.00 0.00 0.00 3.55
2988 10448 8.958119 TTCCTGTGTTACATTAGATTACCATC 57.042 34.615 0.00 0.00 0.00 3.51
2989 10449 8.319057 TCCTGTGTTACATTAGATTACCATCT 57.681 34.615 0.00 0.00 42.83 2.90
2990 10450 8.421784 TCCTGTGTTACATTAGATTACCATCTC 58.578 37.037 0.00 0.00 40.53 2.75
2991 10451 7.657761 CCTGTGTTACATTAGATTACCATCTCC 59.342 40.741 0.00 0.00 40.53 3.71
2992 10452 8.084985 TGTGTTACATTAGATTACCATCTCCA 57.915 34.615 0.00 0.00 40.53 3.86
2993 10453 8.204160 TGTGTTACATTAGATTACCATCTCCAG 58.796 37.037 0.00 0.00 40.53 3.86
2994 10454 7.657761 GTGTTACATTAGATTACCATCTCCAGG 59.342 40.741 0.00 0.00 40.53 4.45
2995 10455 7.347222 TGTTACATTAGATTACCATCTCCAGGT 59.653 37.037 0.00 0.00 40.53 4.00
2996 10456 8.867097 GTTACATTAGATTACCATCTCCAGGTA 58.133 37.037 0.00 0.00 40.53 3.08
2997 10457 7.304497 ACATTAGATTACCATCTCCAGGTAC 57.696 40.000 0.00 0.00 41.13 3.34
2998 10458 6.844388 ACATTAGATTACCATCTCCAGGTACA 59.156 38.462 0.00 0.00 41.13 2.90
2999 10459 7.514127 ACATTAGATTACCATCTCCAGGTACAT 59.486 37.037 0.00 0.00 41.13 2.29
3000 10460 7.540474 TTAGATTACCATCTCCAGGTACATC 57.460 40.000 0.00 0.00 41.13 3.06
3001 10461 4.841246 AGATTACCATCTCCAGGTACATCC 59.159 45.833 0.00 0.00 41.13 3.51
3002 10462 1.414158 ACCATCTCCAGGTACATCCG 58.586 55.000 0.00 0.00 41.99 4.18
3003 10463 1.343075 ACCATCTCCAGGTACATCCGT 60.343 52.381 0.00 0.00 41.99 4.69
3004 10464 1.341531 CCATCTCCAGGTACATCCGTC 59.658 57.143 0.00 0.00 41.99 4.79
3005 10465 1.341531 CATCTCCAGGTACATCCGTCC 59.658 57.143 0.00 0.00 41.99 4.79
3006 10466 0.333652 TCTCCAGGTACATCCGTCCA 59.666 55.000 0.00 0.00 41.99 4.02
3007 10467 1.063190 TCTCCAGGTACATCCGTCCAT 60.063 52.381 0.00 0.00 41.99 3.41
3008 10468 1.069204 CTCCAGGTACATCCGTCCATG 59.931 57.143 0.00 0.00 41.99 3.66
3009 10469 0.532862 CCAGGTACATCCGTCCATGC 60.533 60.000 0.00 0.00 41.99 4.06
3010 10470 0.532862 CAGGTACATCCGTCCATGCC 60.533 60.000 0.00 0.00 41.99 4.40
3011 10471 0.691078 AGGTACATCCGTCCATGCCT 60.691 55.000 0.00 0.00 41.99 4.75
3012 10472 1.045407 GGTACATCCGTCCATGCCTA 58.955 55.000 0.00 0.00 0.00 3.93
3013 10473 1.623811 GGTACATCCGTCCATGCCTAT 59.376 52.381 0.00 0.00 0.00 2.57
3014 10474 2.038557 GGTACATCCGTCCATGCCTATT 59.961 50.000 0.00 0.00 0.00 1.73
3015 10475 3.496160 GGTACATCCGTCCATGCCTATTT 60.496 47.826 0.00 0.00 0.00 1.40
3016 10476 3.297134 ACATCCGTCCATGCCTATTTT 57.703 42.857 0.00 0.00 0.00 1.82
3017 10477 3.214328 ACATCCGTCCATGCCTATTTTC 58.786 45.455 0.00 0.00 0.00 2.29
3018 10478 3.213506 CATCCGTCCATGCCTATTTTCA 58.786 45.455 0.00 0.00 0.00 2.69
3019 10479 3.576078 TCCGTCCATGCCTATTTTCAT 57.424 42.857 0.00 0.00 0.00 2.57
3020 10480 3.213506 TCCGTCCATGCCTATTTTCATG 58.786 45.455 0.00 0.00 39.67 3.07
3021 10481 2.951642 CCGTCCATGCCTATTTTCATGT 59.048 45.455 0.00 0.00 38.63 3.21
3022 10482 3.003689 CCGTCCATGCCTATTTTCATGTC 59.996 47.826 0.00 0.00 38.63 3.06
3023 10483 3.003689 CGTCCATGCCTATTTTCATGTCC 59.996 47.826 0.00 0.00 38.63 4.02
3024 10484 3.953612 GTCCATGCCTATTTTCATGTCCA 59.046 43.478 0.00 0.00 38.63 4.02
3025 10485 4.037208 GTCCATGCCTATTTTCATGTCCAG 59.963 45.833 0.00 0.00 38.63 3.86
3026 10486 3.956199 CCATGCCTATTTTCATGTCCAGT 59.044 43.478 0.00 0.00 38.63 4.00
3027 10487 5.104151 TCCATGCCTATTTTCATGTCCAGTA 60.104 40.000 0.00 0.00 38.63 2.74
3028 10488 5.240183 CCATGCCTATTTTCATGTCCAGTAG 59.760 44.000 0.00 0.00 38.63 2.57
3029 10489 5.692115 TGCCTATTTTCATGTCCAGTAGA 57.308 39.130 0.00 0.00 0.00 2.59
3030 10490 5.428253 TGCCTATTTTCATGTCCAGTAGAC 58.572 41.667 0.00 0.00 46.51 2.59
3038 10498 2.903404 GTCCAGTAGACAGGGAGGG 58.097 63.158 0.00 0.00 45.55 4.30
3039 10499 1.001760 TCCAGTAGACAGGGAGGGC 59.998 63.158 0.00 0.00 0.00 5.19
3040 10500 2.427245 CCAGTAGACAGGGAGGGCG 61.427 68.421 0.00 0.00 0.00 6.13
3041 10501 1.682684 CAGTAGACAGGGAGGGCGT 60.683 63.158 0.00 0.00 0.00 5.68
3042 10502 1.380112 AGTAGACAGGGAGGGCGTC 60.380 63.158 0.00 0.00 0.00 5.19
3043 10503 1.681327 GTAGACAGGGAGGGCGTCA 60.681 63.158 9.66 0.00 31.92 4.35
3044 10504 1.077805 TAGACAGGGAGGGCGTCAA 59.922 57.895 9.66 0.00 31.92 3.18
3045 10505 0.970937 TAGACAGGGAGGGCGTCAAG 60.971 60.000 9.66 0.73 31.92 3.02
3046 10506 2.203788 ACAGGGAGGGCGTCAAGA 60.204 61.111 9.66 0.00 0.00 3.02
3047 10507 1.827399 GACAGGGAGGGCGTCAAGAA 61.827 60.000 9.66 0.00 0.00 2.52
3048 10508 1.374947 CAGGGAGGGCGTCAAGAAA 59.625 57.895 9.66 0.00 0.00 2.52
3049 10509 0.955919 CAGGGAGGGCGTCAAGAAAC 60.956 60.000 9.66 0.00 0.00 2.78
3050 10510 1.128188 AGGGAGGGCGTCAAGAAACT 61.128 55.000 9.66 0.00 0.00 2.66
3051 10511 0.955919 GGGAGGGCGTCAAGAAACTG 60.956 60.000 9.66 0.00 0.00 3.16
3052 10512 0.034896 GGAGGGCGTCAAGAAACTGA 59.965 55.000 9.66 0.00 0.00 3.41
3053 10513 1.542547 GGAGGGCGTCAAGAAACTGAA 60.543 52.381 9.66 0.00 0.00 3.02
3054 10514 1.531578 GAGGGCGTCAAGAAACTGAAC 59.468 52.381 1.64 0.00 0.00 3.18
3055 10515 1.141053 AGGGCGTCAAGAAACTGAACT 59.859 47.619 0.00 0.00 0.00 3.01
3056 10516 1.264288 GGGCGTCAAGAAACTGAACTG 59.736 52.381 0.00 0.00 0.00 3.16
3057 10517 1.334149 GGCGTCAAGAAACTGAACTGC 60.334 52.381 0.00 0.00 0.00 4.40
3058 10518 1.657538 GCGTCAAGAAACTGAACTGCG 60.658 52.381 0.00 0.00 0.00 5.18
3059 10519 1.858458 CGTCAAGAAACTGAACTGCGA 59.142 47.619 0.00 0.00 0.00 5.10
3060 10520 2.347661 CGTCAAGAAACTGAACTGCGAC 60.348 50.000 0.00 0.00 0.00 5.19
3061 10521 2.607635 GTCAAGAAACTGAACTGCGACA 59.392 45.455 0.00 0.00 0.00 4.35
3062 10522 3.248602 GTCAAGAAACTGAACTGCGACAT 59.751 43.478 0.00 0.00 0.00 3.06
3063 10523 3.494626 TCAAGAAACTGAACTGCGACATC 59.505 43.478 0.00 0.00 0.00 3.06
3064 10524 3.393089 AGAAACTGAACTGCGACATCT 57.607 42.857 0.00 0.00 0.00 2.90
3065 10525 3.733337 AGAAACTGAACTGCGACATCTT 58.267 40.909 0.00 0.00 0.00 2.40
3066 10526 3.743396 AGAAACTGAACTGCGACATCTTC 59.257 43.478 0.00 0.00 0.00 2.87
3067 10527 2.820059 ACTGAACTGCGACATCTTCA 57.180 45.000 0.00 0.00 0.00 3.02
3068 10528 3.111853 ACTGAACTGCGACATCTTCAA 57.888 42.857 0.00 0.00 0.00 2.69
3069 10529 3.466836 ACTGAACTGCGACATCTTCAAA 58.533 40.909 0.00 0.00 0.00 2.69
3070 10530 3.876914 ACTGAACTGCGACATCTTCAAAA 59.123 39.130 0.00 0.00 0.00 2.44
3071 10531 4.516698 ACTGAACTGCGACATCTTCAAAAT 59.483 37.500 0.00 0.00 0.00 1.82
3072 10532 5.009010 ACTGAACTGCGACATCTTCAAAATT 59.991 36.000 0.00 0.00 0.00 1.82
3073 10533 5.214417 TGAACTGCGACATCTTCAAAATTG 58.786 37.500 0.00 0.00 0.00 2.32
3074 10534 5.008514 TGAACTGCGACATCTTCAAAATTGA 59.991 36.000 0.00 0.00 34.92 2.57
3075 10535 5.633830 ACTGCGACATCTTCAAAATTGAT 57.366 34.783 0.00 0.00 37.00 2.57
3076 10536 6.741992 ACTGCGACATCTTCAAAATTGATA 57.258 33.333 0.00 0.00 37.00 2.15
3077 10537 7.325660 ACTGCGACATCTTCAAAATTGATAT 57.674 32.000 0.00 0.00 37.00 1.63
3078 10538 8.437360 ACTGCGACATCTTCAAAATTGATATA 57.563 30.769 0.00 0.00 37.00 0.86
3079 10539 9.060347 ACTGCGACATCTTCAAAATTGATATAT 57.940 29.630 0.00 0.00 37.00 0.86
3101 10561 6.875948 ATATTTACGCTGGATAAATGCACA 57.124 33.333 0.00 0.00 34.73 4.57
3102 10562 4.614555 TTTACGCTGGATAAATGCACAG 57.385 40.909 0.00 0.00 0.00 3.66
3103 10563 2.401583 ACGCTGGATAAATGCACAGA 57.598 45.000 4.08 0.00 32.86 3.41
3104 10564 2.710377 ACGCTGGATAAATGCACAGAA 58.290 42.857 4.08 0.00 32.86 3.02
3105 10565 3.081061 ACGCTGGATAAATGCACAGAAA 58.919 40.909 4.08 0.00 32.86 2.52
3106 10566 3.696051 ACGCTGGATAAATGCACAGAAAT 59.304 39.130 4.08 0.00 32.86 2.17
3107 10567 4.039703 CGCTGGATAAATGCACAGAAATG 58.960 43.478 4.08 0.00 32.86 2.32
3108 10568 3.800506 GCTGGATAAATGCACAGAAATGC 59.199 43.478 4.08 0.00 46.32 3.56
3109 10569 4.365723 CTGGATAAATGCACAGAAATGCC 58.634 43.478 0.00 0.00 45.50 4.40
3110 10570 3.181488 TGGATAAATGCACAGAAATGCCG 60.181 43.478 0.00 0.00 45.50 5.69
3111 10571 2.276472 TAAATGCACAGAAATGCCGC 57.724 45.000 0.00 0.00 45.50 6.53
3112 10572 0.390209 AAATGCACAGAAATGCCGCC 60.390 50.000 0.00 0.00 45.50 6.13
3113 10573 1.252904 AATGCACAGAAATGCCGCCT 61.253 50.000 0.00 0.00 45.50 5.52
3114 10574 1.660560 ATGCACAGAAATGCCGCCTC 61.661 55.000 0.00 0.00 45.50 4.70
3115 10575 3.056313 GCACAGAAATGCCGCCTCC 62.056 63.158 0.00 0.00 39.86 4.30
3116 10576 1.377725 CACAGAAATGCCGCCTCCT 60.378 57.895 0.00 0.00 0.00 3.69
3117 10577 1.078143 ACAGAAATGCCGCCTCCTC 60.078 57.895 0.00 0.00 0.00 3.71
3118 10578 1.821332 CAGAAATGCCGCCTCCTCC 60.821 63.158 0.00 0.00 0.00 4.30
3119 10579 1.997874 AGAAATGCCGCCTCCTCCT 60.998 57.895 0.00 0.00 0.00 3.69
3120 10580 1.524849 GAAATGCCGCCTCCTCCTC 60.525 63.158 0.00 0.00 0.00 3.71
3121 10581 1.977293 GAAATGCCGCCTCCTCCTCT 61.977 60.000 0.00 0.00 0.00 3.69
3122 10582 1.566298 AAATGCCGCCTCCTCCTCTT 61.566 55.000 0.00 0.00 0.00 2.85
3123 10583 1.977293 AATGCCGCCTCCTCCTCTTC 61.977 60.000 0.00 0.00 0.00 2.87
3124 10584 2.762043 GCCGCCTCCTCCTCTTCT 60.762 66.667 0.00 0.00 0.00 2.85
3125 10585 2.363172 GCCGCCTCCTCCTCTTCTT 61.363 63.158 0.00 0.00 0.00 2.52
3126 10586 1.519719 CCGCCTCCTCCTCTTCTTG 59.480 63.158 0.00 0.00 0.00 3.02
3127 10587 1.153469 CGCCTCCTCCTCTTCTTGC 60.153 63.158 0.00 0.00 0.00 4.01
3128 10588 1.223211 GCCTCCTCCTCTTCTTGCC 59.777 63.158 0.00 0.00 0.00 4.52
3129 10589 1.271127 GCCTCCTCCTCTTCTTGCCT 61.271 60.000 0.00 0.00 0.00 4.75
3130 10590 1.284313 CCTCCTCCTCTTCTTGCCTT 58.716 55.000 0.00 0.00 0.00 4.35
3131 10591 1.632920 CCTCCTCCTCTTCTTGCCTTT 59.367 52.381 0.00 0.00 0.00 3.11
3132 10592 2.355615 CCTCCTCCTCTTCTTGCCTTTC 60.356 54.545 0.00 0.00 0.00 2.62
3133 10593 1.630878 TCCTCCTCTTCTTGCCTTTCC 59.369 52.381 0.00 0.00 0.00 3.13
3134 10594 1.340502 CCTCCTCTTCTTGCCTTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
3135 10595 1.632920 CTCCTCTTCTTGCCTTTCCCT 59.367 52.381 0.00 0.00 0.00 4.20
3136 10596 2.840651 CTCCTCTTCTTGCCTTTCCCTA 59.159 50.000 0.00 0.00 0.00 3.53
3137 10597 2.840651 TCCTCTTCTTGCCTTTCCCTAG 59.159 50.000 0.00 0.00 0.00 3.02
3138 10598 2.637947 CTCTTCTTGCCTTTCCCTAGC 58.362 52.381 0.00 0.00 0.00 3.42
3139 10599 2.238395 CTCTTCTTGCCTTTCCCTAGCT 59.762 50.000 0.00 0.00 0.00 3.32
3140 10600 2.026822 TCTTCTTGCCTTTCCCTAGCTG 60.027 50.000 0.00 0.00 0.00 4.24
3141 10601 0.035056 TCTTGCCTTTCCCTAGCTGC 60.035 55.000 0.00 0.00 0.00 5.25
3142 10602 1.000896 TTGCCTTTCCCTAGCTGCC 60.001 57.895 0.00 0.00 0.00 4.85
3143 10603 2.124109 GCCTTTCCCTAGCTGCCC 60.124 66.667 0.00 0.00 0.00 5.36
3144 10604 2.983879 GCCTTTCCCTAGCTGCCCA 61.984 63.158 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.466497 ACATAAACCAGAAGACATTCATTACAT 57.534 29.630 0.00 0.00 37.94 2.29
8 9 8.729756 CACATAAACCAGAAGACATTCATTACA 58.270 33.333 0.00 0.00 37.94 2.41
12 13 8.408043 TTTCACATAAACCAGAAGACATTCAT 57.592 30.769 0.00 0.00 37.94 2.57
13 14 7.815840 TTTCACATAAACCAGAAGACATTCA 57.184 32.000 0.00 0.00 37.94 2.57
14 15 7.970614 GGATTTCACATAAACCAGAAGACATTC 59.029 37.037 0.00 0.00 35.52 2.67
18 19 5.673818 GCGGATTTCACATAAACCAGAAGAC 60.674 44.000 0.00 0.00 0.00 3.01
19 20 4.394920 GCGGATTTCACATAAACCAGAAGA 59.605 41.667 0.00 0.00 0.00 2.87
20 21 4.438744 GGCGGATTTCACATAAACCAGAAG 60.439 45.833 0.00 0.00 0.00 2.85
22 23 3.013921 GGCGGATTTCACATAAACCAGA 58.986 45.455 0.00 0.00 0.00 3.86
23 24 3.016736 AGGCGGATTTCACATAAACCAG 58.983 45.455 0.00 0.00 0.00 4.00
24 25 3.080300 AGGCGGATTTCACATAAACCA 57.920 42.857 0.00 0.00 0.00 3.67
26 27 4.434713 ACAAGGCGGATTTCACATAAAC 57.565 40.909 0.00 0.00 0.00 2.01
28 29 4.804108 CAAACAAGGCGGATTTCACATAA 58.196 39.130 0.00 0.00 0.00 1.90
29 30 3.366883 GCAAACAAGGCGGATTTCACATA 60.367 43.478 0.00 0.00 0.00 2.29
32 33 1.269517 TGCAAACAAGGCGGATTTCAC 60.270 47.619 0.00 0.00 0.00 3.18
34 35 2.368655 ATGCAAACAAGGCGGATTTC 57.631 45.000 0.00 0.00 0.00 2.17
35 36 3.951775 TTATGCAAACAAGGCGGATTT 57.048 38.095 0.00 0.00 0.00 2.17
37 38 4.470334 AATTTATGCAAACAAGGCGGAT 57.530 36.364 0.00 0.00 0.00 4.18
38 39 3.951775 AATTTATGCAAACAAGGCGGA 57.048 38.095 0.00 0.00 0.00 5.54
39 40 4.244862 AGAAATTTATGCAAACAAGGCGG 58.755 39.130 0.00 0.00 0.00 6.13
40 41 5.163963 GGAAGAAATTTATGCAAACAAGGCG 60.164 40.000 0.00 0.00 0.00 5.52
42 43 5.348451 CCGGAAGAAATTTATGCAAACAAGG 59.652 40.000 0.00 0.00 0.00 3.61
44 45 5.848406 ACCGGAAGAAATTTATGCAAACAA 58.152 33.333 9.46 0.00 0.00 2.83
45 46 5.461032 ACCGGAAGAAATTTATGCAAACA 57.539 34.783 9.46 0.00 0.00 2.83
46 47 6.779115 AAACCGGAAGAAATTTATGCAAAC 57.221 33.333 9.46 0.00 0.00 2.93
48 49 9.959749 GATATAAACCGGAAGAAATTTATGCAA 57.040 29.630 9.46 0.00 31.43 4.08
50 51 9.959749 TTGATATAAACCGGAAGAAATTTATGC 57.040 29.630 9.46 4.86 31.43 3.14
56 57 9.196139 TGGATTTTGATATAAACCGGAAGAAAT 57.804 29.630 9.46 0.00 0.00 2.17
57 58 8.582657 TGGATTTTGATATAAACCGGAAGAAA 57.417 30.769 9.46 0.00 0.00 2.52
58 59 7.201785 GCTGGATTTTGATATAAACCGGAAGAA 60.202 37.037 9.46 0.00 0.00 2.52
59 60 6.262273 GCTGGATTTTGATATAAACCGGAAGA 59.738 38.462 9.46 0.00 0.00 2.87
62 63 4.513692 CGCTGGATTTTGATATAAACCGGA 59.486 41.667 9.46 0.00 0.00 5.14
63 64 4.274950 ACGCTGGATTTTGATATAAACCGG 59.725 41.667 0.00 0.00 0.00 5.28
64 65 5.204833 CACGCTGGATTTTGATATAAACCG 58.795 41.667 0.00 0.00 0.00 4.44
65 66 6.131544 ACACGCTGGATTTTGATATAAACC 57.868 37.500 0.00 0.00 0.00 3.27
66 67 7.540745 ACAAACACGCTGGATTTTGATATAAAC 59.459 33.333 0.00 0.00 33.90 2.01
67 68 7.598278 ACAAACACGCTGGATTTTGATATAAA 58.402 30.769 0.00 0.00 33.90 1.40
68 69 7.151999 ACAAACACGCTGGATTTTGATATAA 57.848 32.000 0.00 0.00 33.90 0.98
71 72 5.390040 CGTACAAACACGCTGGATTTTGATA 60.390 40.000 0.00 0.00 34.78 2.15
72 73 4.612712 CGTACAAACACGCTGGATTTTGAT 60.613 41.667 0.00 0.00 34.78 2.57
73 74 3.303461 CGTACAAACACGCTGGATTTTGA 60.303 43.478 0.00 0.00 34.78 2.69
74 75 2.970609 CGTACAAACACGCTGGATTTTG 59.029 45.455 0.00 0.00 34.78 2.44
76 77 2.485903 TCGTACAAACACGCTGGATTT 58.514 42.857 0.00 0.00 41.67 2.17
77 78 2.157834 TCGTACAAACACGCTGGATT 57.842 45.000 0.00 0.00 41.67 3.01
78 79 2.157834 TTCGTACAAACACGCTGGAT 57.842 45.000 0.00 0.00 41.67 3.41
79 80 2.157834 ATTCGTACAAACACGCTGGA 57.842 45.000 0.00 0.00 41.67 3.86
80 81 2.412325 GGAATTCGTACAAACACGCTGG 60.412 50.000 0.00 0.00 41.67 4.85
83 84 1.860709 CGGAATTCGTACAAACACGC 58.139 50.000 0.00 0.00 41.67 5.34
94 95 3.991773 TGAAACCAACTAGACGGAATTCG 59.008 43.478 8.86 0.00 45.88 3.34
95 96 5.934935 TTGAAACCAACTAGACGGAATTC 57.065 39.130 8.86 0.00 0.00 2.17
96 97 6.894339 AATTGAAACCAACTAGACGGAATT 57.106 33.333 8.86 4.21 0.00 2.17
97 98 8.458843 CAATAATTGAAACCAACTAGACGGAAT 58.541 33.333 8.86 0.00 0.00 3.01
98 99 7.446013 ACAATAATTGAAACCAACTAGACGGAA 59.554 33.333 8.86 0.00 0.00 4.30
99 100 6.938030 ACAATAATTGAAACCAACTAGACGGA 59.062 34.615 8.86 0.00 0.00 4.69
100 101 7.141100 ACAATAATTGAAACCAACTAGACGG 57.859 36.000 0.00 0.00 0.00 4.79
101 102 6.953743 CGACAATAATTGAAACCAACTAGACG 59.046 38.462 0.00 0.00 0.00 4.18
102 103 8.025243 TCGACAATAATTGAAACCAACTAGAC 57.975 34.615 0.00 0.00 0.00 2.59
103 104 8.610248 TTCGACAATAATTGAAACCAACTAGA 57.390 30.769 0.00 0.00 0.00 2.43
104 105 9.840427 ATTTCGACAATAATTGAAACCAACTAG 57.160 29.630 0.00 0.00 35.30 2.57
105 106 9.619316 CATTTCGACAATAATTGAAACCAACTA 57.381 29.630 0.00 0.00 35.30 2.24
107 108 8.293114 ACATTTCGACAATAATTGAAACCAAC 57.707 30.769 0.00 0.00 35.30 3.77
109 110 9.566530 CATACATTTCGACAATAATTGAAACCA 57.433 29.630 0.00 0.00 35.30 3.67
110 111 8.531530 GCATACATTTCGACAATAATTGAAACC 58.468 33.333 0.00 0.00 35.30 3.27
111 112 9.071221 TGCATACATTTCGACAATAATTGAAAC 57.929 29.630 0.00 0.00 35.30 2.78
112 113 9.288124 CTGCATACATTTCGACAATAATTGAAA 57.712 29.630 0.00 0.00 36.60 2.69
113 114 8.672815 TCTGCATACATTTCGACAATAATTGAA 58.327 29.630 0.00 0.00 0.00 2.69
114 115 8.207521 TCTGCATACATTTCGACAATAATTGA 57.792 30.769 0.00 0.00 0.00 2.57
122 123 7.914871 CCAAAATTATCTGCATACATTTCGACA 59.085 33.333 0.00 0.00 0.00 4.35
124 125 8.219546 TCCAAAATTATCTGCATACATTTCGA 57.780 30.769 0.00 0.00 0.00 3.71
134 135 9.412460 AGAGATTGTTATCCAAAATTATCTGCA 57.588 29.630 0.00 0.00 36.44 4.41
143 144 9.436957 GTGAGACTAAGAGATTGTTATCCAAAA 57.563 33.333 0.00 0.00 36.44 2.44
144 145 8.593679 TGTGAGACTAAGAGATTGTTATCCAAA 58.406 33.333 0.00 0.00 36.44 3.28
145 146 8.134202 TGTGAGACTAAGAGATTGTTATCCAA 57.866 34.615 0.00 0.00 37.49 3.53
146 147 7.718334 TGTGAGACTAAGAGATTGTTATCCA 57.282 36.000 0.00 0.00 0.00 3.41
147 148 7.870445 GGATGTGAGACTAAGAGATTGTTATCC 59.130 40.741 0.00 0.00 0.00 2.59
148 149 7.593273 CGGATGTGAGACTAAGAGATTGTTATC 59.407 40.741 0.00 0.00 0.00 1.75
149 150 7.068839 ACGGATGTGAGACTAAGAGATTGTTAT 59.931 37.037 0.00 0.00 0.00 1.89
150 151 6.377429 ACGGATGTGAGACTAAGAGATTGTTA 59.623 38.462 0.00 0.00 0.00 2.41
152 153 4.707448 ACGGATGTGAGACTAAGAGATTGT 59.293 41.667 0.00 0.00 0.00 2.71
153 154 5.255710 ACGGATGTGAGACTAAGAGATTG 57.744 43.478 0.00 0.00 0.00 2.67
176 177 2.505557 CGTTACCAGTCCGCGGAC 60.506 66.667 43.92 43.92 44.86 4.79
178 179 3.072486 ATCCGTTACCAGTCCGCGG 62.072 63.158 22.12 22.12 43.32 6.46
179 180 1.876714 CATCCGTTACCAGTCCGCG 60.877 63.158 0.00 0.00 0.00 6.46
180 181 2.171725 GCATCCGTTACCAGTCCGC 61.172 63.158 0.00 0.00 0.00 5.54
182 183 4.104143 CGCATCCGTTACCAGTCC 57.896 61.111 0.00 0.00 0.00 3.85
192 193 2.537560 GGCATCTCCAACGCATCCG 61.538 63.158 0.00 0.00 36.10 4.18
193 194 2.189499 GGGCATCTCCAACGCATCC 61.189 63.158 0.00 0.00 36.21 3.51
194 195 0.749454 AAGGGCATCTCCAACGCATC 60.749 55.000 0.00 0.00 36.21 3.91
195 196 0.546122 TAAGGGCATCTCCAACGCAT 59.454 50.000 0.00 0.00 36.21 4.73
196 197 0.107703 CTAAGGGCATCTCCAACGCA 60.108 55.000 0.00 0.00 36.21 5.24
197 198 0.107654 ACTAAGGGCATCTCCAACGC 60.108 55.000 0.00 0.00 36.21 4.84
199 200 1.745653 GCAACTAAGGGCATCTCCAAC 59.254 52.381 0.00 0.00 36.21 3.77
200 201 1.354031 TGCAACTAAGGGCATCTCCAA 59.646 47.619 0.00 0.00 34.58 3.53
201 202 0.991146 TGCAACTAAGGGCATCTCCA 59.009 50.000 0.00 0.00 34.58 3.86
202 203 3.882131 TGCAACTAAGGGCATCTCC 57.118 52.632 0.00 0.00 34.58 3.71
207 208 1.277842 TCTCGAATGCAACTAAGGGCA 59.722 47.619 0.00 0.00 45.23 5.36
208 209 1.666189 GTCTCGAATGCAACTAAGGGC 59.334 52.381 0.00 0.00 0.00 5.19
209 210 2.280628 GGTCTCGAATGCAACTAAGGG 58.719 52.381 0.00 0.00 0.00 3.95
211 212 3.589988 ACTGGTCTCGAATGCAACTAAG 58.410 45.455 0.00 0.00 0.00 2.18
217 4602 2.542020 TTGAACTGGTCTCGAATGCA 57.458 45.000 0.00 0.00 0.00 3.96
277 4663 2.159476 CGTTTCGTAGATCCGACTTCCA 60.159 50.000 0.00 0.00 36.42 3.53
285 4671 1.584483 TCGCGCGTTTCGTAGATCC 60.584 57.895 30.98 0.00 41.07 3.36
288 4674 2.502510 GGTCGCGCGTTTCGTAGA 60.503 61.111 30.98 4.20 41.07 2.59
298 4684 1.074319 TCAACAATACTCGGTCGCGC 61.074 55.000 0.00 0.00 0.00 6.86
299 4685 1.556564 ATCAACAATACTCGGTCGCG 58.443 50.000 0.00 0.00 0.00 5.87
327 4713 9.627123 CCCATCTTAATTTAGTCAATGGTCTAA 57.373 33.333 8.85 0.00 32.16 2.10
328 4714 8.998814 TCCCATCTTAATTTAGTCAATGGTCTA 58.001 33.333 8.85 0.00 32.16 2.59
329 4715 7.872138 TCCCATCTTAATTTAGTCAATGGTCT 58.128 34.615 8.85 0.00 32.16 3.85
330 4716 8.697507 ATCCCATCTTAATTTAGTCAATGGTC 57.302 34.615 8.85 0.00 32.16 4.02
337 4723 5.246307 CCGGGATCCCATCTTAATTTAGTC 58.754 45.833 30.42 0.00 35.37 2.59
388 4782 2.733858 GCAGAACCGAGAAGAGTAGCTG 60.734 54.545 0.00 0.00 0.00 4.24
389 4783 1.474879 GCAGAACCGAGAAGAGTAGCT 59.525 52.381 0.00 0.00 0.00 3.32
425 4819 4.664062 GCTGGCTAGCCATGGAAA 57.336 55.556 35.93 13.08 46.15 3.13
434 4828 0.170116 GGATCGATCGAGCTGGCTAG 59.830 60.000 29.98 0.00 0.00 3.42
435 4829 0.250945 AGGATCGATCGAGCTGGCTA 60.251 55.000 29.98 2.10 0.00 3.93
436 4830 1.530419 AGGATCGATCGAGCTGGCT 60.530 57.895 29.98 17.52 0.00 4.75
455 4862 1.377333 GTTGACCTAGTGGCAGGCC 60.377 63.158 2.62 2.62 39.53 5.19
928 5816 8.756864 GTTATTCGATGAGAAGTTTCCTATGAC 58.243 37.037 0.00 0.00 42.92 3.06
962 5850 2.703416 TGAGTGCTTCTGGTAATGCAG 58.297 47.619 0.00 0.00 36.03 4.41
986 5876 0.471971 ATATAGTGCTGGAGGCCCGT 60.472 55.000 0.00 0.00 40.92 5.28
987 5877 1.557099 TATATAGTGCTGGAGGCCCG 58.443 55.000 0.00 0.00 40.92 6.13
988 5878 3.388350 GGTATATATAGTGCTGGAGGCCC 59.612 52.174 0.00 0.00 40.92 5.80
1195 6137 1.003355 CACTCCCACCATTCGCACT 60.003 57.895 0.00 0.00 0.00 4.40
1604 6546 2.046700 CGCCACCACCGTTACCAT 60.047 61.111 0.00 0.00 0.00 3.55
1762 6704 1.004044 AGCACCAGATCCAACTCCAAG 59.996 52.381 0.00 0.00 0.00 3.61
1887 6829 0.038744 CTCCACCATTGCCAGTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
1914 6856 1.961180 CTCCACCACCAGATCCGGAC 61.961 65.000 6.12 0.11 0.00 4.79
2047 6989 0.605589 CTATGCTCAGGATCGTCCCC 59.394 60.000 0.00 0.00 37.19 4.81
2231 7188 7.994425 AAATTTGGTCAAAACTCAAAAAGGT 57.006 28.000 0.00 0.00 32.79 3.50
2308 7267 5.560724 AGTTTGCATAGCTCTAGAAAACCA 58.439 37.500 11.09 0.00 0.00 3.67
2309 7268 5.877564 AGAGTTTGCATAGCTCTAGAAAACC 59.122 40.000 11.82 5.52 37.78 3.27
2355 7314 6.950860 ACCCAATTTAACATGAGGGAAATT 57.049 33.333 0.00 3.07 39.60 1.82
2359 7318 4.093011 CCAACCCAATTTAACATGAGGGA 58.907 43.478 0.00 0.00 39.60 4.20
2368 7327 8.490311 AGAGATTCAAAAACCAACCCAATTTAA 58.510 29.630 0.00 0.00 0.00 1.52
2735 10194 4.504097 GTGACAGCTTTTCACATGGTTTTC 59.496 41.667 17.02 0.00 42.58 2.29
2948 10408 4.021016 ACACAGGAAGCGATCTAGTTCTTT 60.021 41.667 0.00 0.00 0.00 2.52
2950 10410 3.093057 ACACAGGAAGCGATCTAGTTCT 58.907 45.455 0.00 0.00 0.00 3.01
2951 10411 3.512033 ACACAGGAAGCGATCTAGTTC 57.488 47.619 0.00 0.00 0.00 3.01
2953 10413 3.762288 TGTAACACAGGAAGCGATCTAGT 59.238 43.478 0.00 0.00 0.00 2.57
2954 10414 4.371855 TGTAACACAGGAAGCGATCTAG 57.628 45.455 0.00 0.00 0.00 2.43
2955 10415 5.339008 AATGTAACACAGGAAGCGATCTA 57.661 39.130 0.00 0.00 0.00 1.98
2956 10416 3.895232 ATGTAACACAGGAAGCGATCT 57.105 42.857 0.00 0.00 0.00 2.75
2957 10417 5.348986 TCTAATGTAACACAGGAAGCGATC 58.651 41.667 0.00 0.00 0.00 3.69
2958 10418 5.339008 TCTAATGTAACACAGGAAGCGAT 57.661 39.130 0.00 0.00 0.00 4.58
2959 10419 4.794278 TCTAATGTAACACAGGAAGCGA 57.206 40.909 0.00 0.00 0.00 4.93
2960 10420 6.018994 GGTAATCTAATGTAACACAGGAAGCG 60.019 42.308 0.00 0.00 0.00 4.68
2961 10421 6.821665 TGGTAATCTAATGTAACACAGGAAGC 59.178 38.462 0.00 0.00 0.00 3.86
2962 10422 8.964476 ATGGTAATCTAATGTAACACAGGAAG 57.036 34.615 0.00 0.00 0.00 3.46
2963 10423 8.768397 AGATGGTAATCTAATGTAACACAGGAA 58.232 33.333 0.00 0.00 41.57 3.36
2964 10424 8.319057 AGATGGTAATCTAATGTAACACAGGA 57.681 34.615 0.00 0.00 41.57 3.86
2965 10425 7.657761 GGAGATGGTAATCTAATGTAACACAGG 59.342 40.741 0.00 0.00 43.48 4.00
2966 10426 8.204160 TGGAGATGGTAATCTAATGTAACACAG 58.796 37.037 0.00 0.00 43.48 3.66
2967 10427 8.084985 TGGAGATGGTAATCTAATGTAACACA 57.915 34.615 0.00 0.00 43.48 3.72
2968 10428 7.657761 CCTGGAGATGGTAATCTAATGTAACAC 59.342 40.741 0.00 0.00 43.48 3.32
2969 10429 7.347222 ACCTGGAGATGGTAATCTAATGTAACA 59.653 37.037 0.00 0.00 43.48 2.41
2970 10430 7.736893 ACCTGGAGATGGTAATCTAATGTAAC 58.263 38.462 0.00 0.00 43.48 2.50
2971 10431 7.931015 ACCTGGAGATGGTAATCTAATGTAA 57.069 36.000 0.00 0.00 43.48 2.41
2972 10432 8.008332 TGTACCTGGAGATGGTAATCTAATGTA 58.992 37.037 0.00 0.00 43.48 2.29
2973 10433 6.844388 TGTACCTGGAGATGGTAATCTAATGT 59.156 38.462 0.00 0.00 43.48 2.71
2974 10434 7.303182 TGTACCTGGAGATGGTAATCTAATG 57.697 40.000 0.00 0.00 43.48 1.90
2975 10435 7.181125 GGATGTACCTGGAGATGGTAATCTAAT 59.819 40.741 0.00 0.00 41.16 1.73
2976 10436 6.497259 GGATGTACCTGGAGATGGTAATCTAA 59.503 42.308 0.00 0.00 41.16 2.10
2977 10437 6.017192 GGATGTACCTGGAGATGGTAATCTA 58.983 44.000 0.00 0.00 41.16 1.98
2978 10438 4.841246 GGATGTACCTGGAGATGGTAATCT 59.159 45.833 0.00 0.00 41.16 2.40
2979 10439 4.322049 CGGATGTACCTGGAGATGGTAATC 60.322 50.000 0.00 0.00 41.16 1.75
2980 10440 3.578716 CGGATGTACCTGGAGATGGTAAT 59.421 47.826 0.00 0.00 41.16 1.89
2981 10441 2.963101 CGGATGTACCTGGAGATGGTAA 59.037 50.000 0.00 0.00 41.16 2.85
2982 10442 2.091499 ACGGATGTACCTGGAGATGGTA 60.091 50.000 0.00 0.00 38.88 3.25
2983 10443 1.343075 ACGGATGTACCTGGAGATGGT 60.343 52.381 0.00 0.00 41.28 3.55
2984 10444 1.341531 GACGGATGTACCTGGAGATGG 59.658 57.143 0.00 0.00 36.31 3.51
2985 10445 1.341531 GGACGGATGTACCTGGAGATG 59.658 57.143 0.00 0.00 36.31 2.90
2986 10446 1.063190 TGGACGGATGTACCTGGAGAT 60.063 52.381 0.00 0.00 36.31 2.75
2987 10447 0.333652 TGGACGGATGTACCTGGAGA 59.666 55.000 0.00 0.00 36.31 3.71
2988 10448 1.069204 CATGGACGGATGTACCTGGAG 59.931 57.143 0.00 0.00 36.31 3.86
2989 10449 1.119684 CATGGACGGATGTACCTGGA 58.880 55.000 0.00 0.00 36.31 3.86
2990 10450 0.532862 GCATGGACGGATGTACCTGG 60.533 60.000 0.00 0.00 36.31 4.45
2991 10451 0.532862 GGCATGGACGGATGTACCTG 60.533 60.000 0.00 0.00 36.31 4.00
2992 10452 0.691078 AGGCATGGACGGATGTACCT 60.691 55.000 0.00 0.00 36.31 3.08
2993 10453 1.045407 TAGGCATGGACGGATGTACC 58.955 55.000 0.00 0.00 0.00 3.34
2994 10454 3.402628 AATAGGCATGGACGGATGTAC 57.597 47.619 0.00 0.00 0.00 2.90
2995 10455 4.141597 TGAAAATAGGCATGGACGGATGTA 60.142 41.667 0.00 0.00 0.00 2.29
2996 10456 3.214328 GAAAATAGGCATGGACGGATGT 58.786 45.455 0.00 0.00 0.00 3.06
2997 10457 3.213506 TGAAAATAGGCATGGACGGATG 58.786 45.455 0.00 0.00 0.00 3.51
2998 10458 3.576078 TGAAAATAGGCATGGACGGAT 57.424 42.857 0.00 0.00 0.00 4.18
2999 10459 3.213506 CATGAAAATAGGCATGGACGGA 58.786 45.455 0.00 0.00 38.52 4.69
3000 10460 2.951642 ACATGAAAATAGGCATGGACGG 59.048 45.455 0.00 0.00 44.64 4.79
3001 10461 3.003689 GGACATGAAAATAGGCATGGACG 59.996 47.826 0.00 0.00 44.64 4.79
3002 10462 3.953612 TGGACATGAAAATAGGCATGGAC 59.046 43.478 0.00 0.00 44.64 4.02
3003 10463 4.209538 CTGGACATGAAAATAGGCATGGA 58.790 43.478 0.00 0.00 44.64 3.41
3004 10464 3.956199 ACTGGACATGAAAATAGGCATGG 59.044 43.478 0.00 0.00 44.64 3.66
3005 10465 6.017605 GTCTACTGGACATGAAAATAGGCATG 60.018 42.308 0.00 0.00 45.56 4.06
3006 10466 6.058183 GTCTACTGGACATGAAAATAGGCAT 58.942 40.000 0.00 0.00 43.94 4.40
3007 10467 5.428253 GTCTACTGGACATGAAAATAGGCA 58.572 41.667 0.00 0.00 43.94 4.75
3008 10468 5.993106 GTCTACTGGACATGAAAATAGGC 57.007 43.478 0.00 0.00 43.94 3.93
3020 10480 1.331399 GCCCTCCCTGTCTACTGGAC 61.331 65.000 7.54 0.00 44.70 4.02
3021 10481 1.001760 GCCCTCCCTGTCTACTGGA 59.998 63.158 7.54 0.53 37.15 3.86
3022 10482 2.427245 CGCCCTCCCTGTCTACTGG 61.427 68.421 0.00 0.00 35.06 4.00
3023 10483 1.668101 GACGCCCTCCCTGTCTACTG 61.668 65.000 0.00 0.00 0.00 2.74
3024 10484 1.380112 GACGCCCTCCCTGTCTACT 60.380 63.158 0.00 0.00 0.00 2.57
3025 10485 1.255667 TTGACGCCCTCCCTGTCTAC 61.256 60.000 0.00 0.00 33.81 2.59
3026 10486 0.970937 CTTGACGCCCTCCCTGTCTA 60.971 60.000 0.00 0.00 33.81 2.59
3027 10487 2.203788 TTGACGCCCTCCCTGTCT 60.204 61.111 0.00 0.00 33.81 3.41
3028 10488 1.827399 TTCTTGACGCCCTCCCTGTC 61.827 60.000 0.00 0.00 0.00 3.51
3029 10489 1.415672 TTTCTTGACGCCCTCCCTGT 61.416 55.000 0.00 0.00 0.00 4.00
3030 10490 0.955919 GTTTCTTGACGCCCTCCCTG 60.956 60.000 0.00 0.00 0.00 4.45
3031 10491 1.128188 AGTTTCTTGACGCCCTCCCT 61.128 55.000 0.00 0.00 0.00 4.20
3032 10492 0.955919 CAGTTTCTTGACGCCCTCCC 60.956 60.000 0.00 0.00 0.00 4.30
3033 10493 0.034896 TCAGTTTCTTGACGCCCTCC 59.965 55.000 0.00 0.00 0.00 4.30
3034 10494 1.531578 GTTCAGTTTCTTGACGCCCTC 59.468 52.381 0.00 0.00 0.00 4.30
3035 10495 1.141053 AGTTCAGTTTCTTGACGCCCT 59.859 47.619 0.00 0.00 0.00 5.19
3036 10496 1.264288 CAGTTCAGTTTCTTGACGCCC 59.736 52.381 0.00 0.00 0.00 6.13
3037 10497 1.334149 GCAGTTCAGTTTCTTGACGCC 60.334 52.381 0.00 0.00 0.00 5.68
3038 10498 1.657538 CGCAGTTCAGTTTCTTGACGC 60.658 52.381 0.00 0.00 0.00 5.19
3039 10499 1.858458 TCGCAGTTCAGTTTCTTGACG 59.142 47.619 0.00 0.00 0.00 4.35
3040 10500 2.607635 TGTCGCAGTTCAGTTTCTTGAC 59.392 45.455 0.00 0.00 0.00 3.18
3041 10501 2.899976 TGTCGCAGTTCAGTTTCTTGA 58.100 42.857 0.00 0.00 0.00 3.02
3042 10502 3.496130 AGATGTCGCAGTTCAGTTTCTTG 59.504 43.478 0.00 0.00 0.00 3.02
3043 10503 3.733337 AGATGTCGCAGTTCAGTTTCTT 58.267 40.909 0.00 0.00 0.00 2.52
3044 10504 3.393089 AGATGTCGCAGTTCAGTTTCT 57.607 42.857 0.00 0.00 0.00 2.52
3045 10505 3.494626 TGAAGATGTCGCAGTTCAGTTTC 59.505 43.478 0.00 0.00 0.00 2.78
3046 10506 3.466836 TGAAGATGTCGCAGTTCAGTTT 58.533 40.909 0.00 0.00 0.00 2.66
3047 10507 3.111853 TGAAGATGTCGCAGTTCAGTT 57.888 42.857 0.00 0.00 0.00 3.16
3048 10508 2.820059 TGAAGATGTCGCAGTTCAGT 57.180 45.000 0.00 0.00 0.00 3.41
3049 10509 4.472691 TTTTGAAGATGTCGCAGTTCAG 57.527 40.909 7.17 0.00 30.86 3.02
3050 10510 5.008514 TCAATTTTGAAGATGTCGCAGTTCA 59.991 36.000 0.00 4.43 33.55 3.18
3051 10511 5.451908 TCAATTTTGAAGATGTCGCAGTTC 58.548 37.500 0.00 0.00 33.55 3.01
3052 10512 5.437289 TCAATTTTGAAGATGTCGCAGTT 57.563 34.783 0.00 0.00 33.55 3.16
3053 10513 5.633830 ATCAATTTTGAAGATGTCGCAGT 57.366 34.783 0.00 0.00 41.13 4.40
3075 10535 9.660180 TGTGCATTTATCCAGCGTAAATATATA 57.340 29.630 0.00 0.00 32.17 0.86
3076 10536 8.560355 TGTGCATTTATCCAGCGTAAATATAT 57.440 30.769 0.00 0.00 32.17 0.86
3077 10537 7.875554 TCTGTGCATTTATCCAGCGTAAATATA 59.124 33.333 0.00 0.00 32.17 0.86
3078 10538 6.710295 TCTGTGCATTTATCCAGCGTAAATAT 59.290 34.615 0.00 0.00 32.17 1.28
3079 10539 6.052360 TCTGTGCATTTATCCAGCGTAAATA 58.948 36.000 0.00 0.00 32.17 1.40
3080 10540 4.881273 TCTGTGCATTTATCCAGCGTAAAT 59.119 37.500 0.00 0.00 33.29 1.40
3081 10541 4.257731 TCTGTGCATTTATCCAGCGTAAA 58.742 39.130 0.00 0.00 0.00 2.01
3082 10542 3.867857 TCTGTGCATTTATCCAGCGTAA 58.132 40.909 0.00 0.00 0.00 3.18
3083 10543 3.535280 TCTGTGCATTTATCCAGCGTA 57.465 42.857 0.00 0.00 0.00 4.42
3084 10544 2.401583 TCTGTGCATTTATCCAGCGT 57.598 45.000 0.00 0.00 0.00 5.07
3085 10545 3.763097 TTTCTGTGCATTTATCCAGCG 57.237 42.857 0.00 0.00 0.00 5.18
3086 10546 3.800506 GCATTTCTGTGCATTTATCCAGC 59.199 43.478 0.00 0.00 44.43 4.85
3087 10547 4.365723 GGCATTTCTGTGCATTTATCCAG 58.634 43.478 0.00 0.00 46.81 3.86
3088 10548 3.181488 CGGCATTTCTGTGCATTTATCCA 60.181 43.478 0.00 0.00 46.81 3.41
3089 10549 3.374745 CGGCATTTCTGTGCATTTATCC 58.625 45.455 0.00 0.00 46.81 2.59
3090 10550 2.791004 GCGGCATTTCTGTGCATTTATC 59.209 45.455 0.00 0.00 46.81 1.75
3091 10551 2.481795 GGCGGCATTTCTGTGCATTTAT 60.482 45.455 3.07 0.00 46.81 1.40
3092 10552 1.135141 GGCGGCATTTCTGTGCATTTA 60.135 47.619 3.07 0.00 46.81 1.40
3093 10553 0.390209 GGCGGCATTTCTGTGCATTT 60.390 50.000 3.07 0.00 46.81 2.32
3094 10554 1.216178 GGCGGCATTTCTGTGCATT 59.784 52.632 3.07 0.00 46.81 3.56
3095 10555 1.660560 GAGGCGGCATTTCTGTGCAT 61.661 55.000 13.08 0.00 46.81 3.96
3096 10556 2.282391 AGGCGGCATTTCTGTGCA 60.282 55.556 13.08 0.00 46.81 4.57
3097 10557 2.486966 GAGGCGGCATTTCTGTGC 59.513 61.111 13.08 0.00 44.31 4.57
3098 10558 1.372087 GAGGAGGCGGCATTTCTGTG 61.372 60.000 13.08 0.00 0.00 3.66
3099 10559 1.078143 GAGGAGGCGGCATTTCTGT 60.078 57.895 13.08 0.00 0.00 3.41
3100 10560 1.821332 GGAGGAGGCGGCATTTCTG 60.821 63.158 13.08 0.00 0.00 3.02
3101 10561 1.977293 GAGGAGGAGGCGGCATTTCT 61.977 60.000 13.08 0.00 0.00 2.52
3102 10562 1.524849 GAGGAGGAGGCGGCATTTC 60.525 63.158 13.08 4.86 0.00 2.17
3103 10563 1.566298 AAGAGGAGGAGGCGGCATTT 61.566 55.000 13.08 0.00 0.00 2.32
3104 10564 1.977293 GAAGAGGAGGAGGCGGCATT 61.977 60.000 13.08 0.00 0.00 3.56
3105 10565 2.366167 AAGAGGAGGAGGCGGCAT 60.366 61.111 13.08 0.00 0.00 4.40
3106 10566 3.077556 GAAGAGGAGGAGGCGGCA 61.078 66.667 13.08 0.00 0.00 5.69
3107 10567 2.363172 AAGAAGAGGAGGAGGCGGC 61.363 63.158 0.00 0.00 0.00 6.53
3108 10568 1.519719 CAAGAAGAGGAGGAGGCGG 59.480 63.158 0.00 0.00 0.00 6.13
3109 10569 1.153469 GCAAGAAGAGGAGGAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
3110 10570 1.223211 GGCAAGAAGAGGAGGAGGC 59.777 63.158 0.00 0.00 0.00 4.70
3111 10571 1.284313 AAGGCAAGAAGAGGAGGAGG 58.716 55.000 0.00 0.00 0.00 4.30
3112 10572 2.355615 GGAAAGGCAAGAAGAGGAGGAG 60.356 54.545 0.00 0.00 0.00 3.69
3113 10573 1.630878 GGAAAGGCAAGAAGAGGAGGA 59.369 52.381 0.00 0.00 0.00 3.71
3114 10574 1.340502 GGGAAAGGCAAGAAGAGGAGG 60.341 57.143 0.00 0.00 0.00 4.30
3115 10575 1.632920 AGGGAAAGGCAAGAAGAGGAG 59.367 52.381 0.00 0.00 0.00 3.69
3116 10576 1.747444 AGGGAAAGGCAAGAAGAGGA 58.253 50.000 0.00 0.00 0.00 3.71
3117 10577 2.682269 GCTAGGGAAAGGCAAGAAGAGG 60.682 54.545 0.00 0.00 0.00 3.69
3118 10578 2.238395 AGCTAGGGAAAGGCAAGAAGAG 59.762 50.000 0.00 0.00 0.00 2.85
3119 10579 2.026822 CAGCTAGGGAAAGGCAAGAAGA 60.027 50.000 0.00 0.00 0.00 2.87
3120 10580 2.363683 CAGCTAGGGAAAGGCAAGAAG 58.636 52.381 0.00 0.00 0.00 2.85
3121 10581 1.614317 GCAGCTAGGGAAAGGCAAGAA 60.614 52.381 0.00 0.00 0.00 2.52
3122 10582 0.035056 GCAGCTAGGGAAAGGCAAGA 60.035 55.000 0.00 0.00 0.00 3.02
3123 10583 1.034292 GGCAGCTAGGGAAAGGCAAG 61.034 60.000 0.00 0.00 0.00 4.01
3124 10584 1.000896 GGCAGCTAGGGAAAGGCAA 60.001 57.895 0.00 0.00 0.00 4.52
3125 10585 2.677228 GGCAGCTAGGGAAAGGCA 59.323 61.111 0.00 0.00 0.00 4.75
3126 10586 2.124109 GGGCAGCTAGGGAAAGGC 60.124 66.667 0.00 0.00 0.00 4.35
3127 10587 3.415186 TGGGCAGCTAGGGAAAGG 58.585 61.111 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.