Multiple sequence alignment - TraesCS5D01G537300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G537300 chr5D 100.000 5174 0 0 1 5174 549885841 549891014 0.000000e+00 9555
1 TraesCS5D01G537300 chr5B 89.514 1421 109 19 1347 2746 701546404 701547805 0.000000e+00 1762
2 TraesCS5D01G537300 chr5B 93.700 1127 65 6 3326 4448 701548154 701549278 0.000000e+00 1683
3 TraesCS5D01G537300 chr5B 84.785 953 60 33 422 1341 701545465 701546365 0.000000e+00 878
4 TraesCS5D01G537300 chr5B 94.245 278 8 5 4902 5174 701549521 701549795 8.010000e-113 418
5 TraesCS5D01G537300 chr5B 85.278 360 29 12 2907 3256 701547810 701548155 2.960000e-92 350
6 TraesCS5D01G537300 chr4A 86.636 1317 62 38 65 1345 617860497 617859259 0.000000e+00 1352
7 TraesCS5D01G537300 chr4A 94.034 771 42 2 3510 4280 617856738 617855972 0.000000e+00 1166
8 TraesCS5D01G537300 chr4A 91.743 763 31 13 4441 5174 617854737 617853978 0.000000e+00 1031
9 TraesCS5D01G537300 chr4A 84.737 1009 74 25 1797 2749 617858214 617857230 0.000000e+00 937
10 TraesCS5D01G537300 chr4A 81.998 861 65 38 1794 2602 617858729 617857907 0.000000e+00 649
11 TraesCS5D01G537300 chr4A 88.528 462 28 9 1337 1788 617859221 617858775 2.120000e-148 536
12 TraesCS5D01G537300 chr4A 96.685 181 5 1 4266 4445 617855951 617855771 3.030000e-77 300
13 TraesCS5D01G537300 chr2B 93.679 791 44 5 3704 4490 329465004 329464216 0.000000e+00 1179
14 TraesCS5D01G537300 chr2B 91.260 389 23 8 4792 5174 329464013 329463630 2.140000e-143 520
15 TraesCS5D01G537300 chr1A 90.756 357 29 4 1913 2266 34289414 34289769 1.690000e-129 473
16 TraesCS5D01G537300 chr1B 83.439 157 12 8 2857 2999 47274060 47274216 3.250000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G537300 chr5D 549885841 549891014 5173 False 9555.0 9555 100.000000 1 5174 1 chr5D.!!$F1 5173
1 TraesCS5D01G537300 chr5B 701545465 701549795 4330 False 1018.2 1762 89.504400 422 5174 5 chr5B.!!$F1 4752
2 TraesCS5D01G537300 chr4A 617853978 617860497 6519 True 853.0 1352 89.194429 65 5174 7 chr4A.!!$R1 5109
3 TraesCS5D01G537300 chr2B 329463630 329465004 1374 True 849.5 1179 92.469500 3704 5174 2 chr2B.!!$R1 1470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 685 0.035439 TTCCCCCTTTTAGCTGCTCG 60.035 55.0 4.91 0.0 0.00 5.03 F
737 762 0.112412 GGACAGCCAGGGGAAGAAAA 59.888 55.0 0.00 0.0 0.00 2.29 F
739 764 0.113190 ACAGCCAGGGGAAGAAAAGG 59.887 55.0 0.00 0.0 0.00 3.11 F
743 768 0.482887 CCAGGGGAAGAAAAGGTGGT 59.517 55.0 0.00 0.0 0.00 4.16 F
1329 1387 0.759959 TTCTTACTCCGCACCACCAA 59.240 50.0 0.00 0.0 0.00 3.67 F
2809 3529 0.179037 TTCAGTGTGCTGCTCTTGCT 60.179 50.0 0.00 0.0 42.29 3.91 F
2905 3625 0.108138 AGGGCAATAGCAGACGTGAC 60.108 55.0 0.00 0.0 44.61 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1761 1.358152 TCTACCCCCTTCACAACCTG 58.642 55.000 0.00 0.00 0.00 4.00 R
2671 3391 1.421268 ACCTGGTGCATCAGAACTTCA 59.579 47.619 28.75 0.00 36.93 3.02 R
2674 3394 2.026822 CCTTACCTGGTGCATCAGAACT 60.027 50.000 28.75 12.23 36.93 3.01 R
2688 3408 2.241430 GCCTTTGACATACCCCTTACCT 59.759 50.000 0.00 0.00 0.00 3.08 R
2886 3606 0.108138 GTCACGTCTGCTATTGCCCT 60.108 55.000 0.00 0.00 38.71 5.19 R
3958 4694 0.901124 AGCTTCTTCATCTCGCTGGT 59.099 50.000 0.00 0.00 0.00 4.00 R
4742 6582 1.000060 TGGATTCAGTTGCAAGCAAGC 60.000 47.619 7.88 3.77 36.52 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.166367 GCAACACATTACAAAAAGATGAGATC 57.834 34.615 0.00 0.00 0.00 2.75
26 27 7.809331 GCAACACATTACAAAAAGATGAGATCA 59.191 33.333 0.00 0.00 0.00 2.92
27 28 9.338291 CAACACATTACAAAAAGATGAGATCAG 57.662 33.333 0.00 0.00 0.00 2.90
28 29 8.853077 ACACATTACAAAAAGATGAGATCAGA 57.147 30.769 0.00 0.00 0.00 3.27
29 30 9.458727 ACACATTACAAAAAGATGAGATCAGAT 57.541 29.630 0.00 0.00 0.00 2.90
30 31 9.932699 CACATTACAAAAAGATGAGATCAGATC 57.067 33.333 1.64 1.64 0.00 2.75
31 32 8.824781 ACATTACAAAAAGATGAGATCAGATCG 58.175 33.333 4.67 0.00 0.00 3.69
32 33 9.038803 CATTACAAAAAGATGAGATCAGATCGA 57.961 33.333 4.67 0.00 0.00 3.59
33 34 9.775854 ATTACAAAAAGATGAGATCAGATCGAT 57.224 29.630 0.00 0.00 36.91 3.59
35 36 8.586570 ACAAAAAGATGAGATCAGATCGATAC 57.413 34.615 0.00 0.00 33.17 2.24
36 37 8.420222 ACAAAAAGATGAGATCAGATCGATACT 58.580 33.333 0.00 0.00 33.17 2.12
37 38 9.905171 CAAAAAGATGAGATCAGATCGATACTA 57.095 33.333 0.00 0.00 33.17 1.82
39 40 8.862325 AAAGATGAGATCAGATCGATACTAGT 57.138 34.615 0.00 0.00 33.17 2.57
40 41 9.952030 AAAGATGAGATCAGATCGATACTAGTA 57.048 33.333 4.77 4.77 33.17 1.82
41 42 9.599866 AAGATGAGATCAGATCGATACTAGTAG 57.400 37.037 8.85 0.00 33.17 2.57
42 43 8.977412 AGATGAGATCAGATCGATACTAGTAGA 58.023 37.037 8.85 1.56 33.17 2.59
43 44 9.764363 GATGAGATCAGATCGATACTAGTAGAT 57.236 37.037 8.85 6.55 33.17 1.98
44 45 8.940768 TGAGATCAGATCGATACTAGTAGATG 57.059 38.462 8.85 0.98 33.17 2.90
45 46 7.984617 TGAGATCAGATCGATACTAGTAGATGG 59.015 40.741 8.85 0.00 33.17 3.51
46 47 7.857456 AGATCAGATCGATACTAGTAGATGGT 58.143 38.462 8.85 0.00 33.17 3.55
47 48 8.983789 AGATCAGATCGATACTAGTAGATGGTA 58.016 37.037 8.85 0.00 33.17 3.25
48 49 9.602568 GATCAGATCGATACTAGTAGATGGTAA 57.397 37.037 8.85 0.00 33.17 2.85
50 51 9.961264 TCAGATCGATACTAGTAGATGGTAATT 57.039 33.333 8.85 0.00 0.00 1.40
54 55 9.640963 ATCGATACTAGTAGATGGTAATTTTGC 57.359 33.333 8.85 0.00 0.00 3.68
55 56 8.086522 TCGATACTAGTAGATGGTAATTTTGCC 58.913 37.037 8.85 0.00 0.00 4.52
56 57 7.331193 CGATACTAGTAGATGGTAATTTTGCCC 59.669 40.741 8.85 0.00 31.21 5.36
57 58 6.321821 ACTAGTAGATGGTAATTTTGCCCA 57.678 37.500 3.59 0.00 31.21 5.36
58 59 6.120220 ACTAGTAGATGGTAATTTTGCCCAC 58.880 40.000 3.59 0.00 31.21 4.61
59 60 4.278310 AGTAGATGGTAATTTTGCCCACC 58.722 43.478 0.00 0.00 31.21 4.61
60 61 3.473113 AGATGGTAATTTTGCCCACCT 57.527 42.857 0.00 0.00 31.21 4.00
61 62 4.601406 AGATGGTAATTTTGCCCACCTA 57.399 40.909 0.00 0.00 31.21 3.08
62 63 4.278310 AGATGGTAATTTTGCCCACCTAC 58.722 43.478 0.00 0.00 31.21 3.18
63 64 2.438411 TGGTAATTTTGCCCACCTACG 58.562 47.619 0.00 0.00 31.21 3.51
64 65 2.040012 TGGTAATTTTGCCCACCTACGA 59.960 45.455 0.00 0.00 31.21 3.43
65 66 3.083293 GGTAATTTTGCCCACCTACGAA 58.917 45.455 0.00 0.00 0.00 3.85
66 67 3.506844 GGTAATTTTGCCCACCTACGAAA 59.493 43.478 0.00 0.00 0.00 3.46
67 68 3.934457 AATTTTGCCCACCTACGAAAG 57.066 42.857 0.00 0.00 0.00 2.62
91 92 1.952296 GGTCCAGCATTGCTCATAAGG 59.048 52.381 8.54 6.91 36.40 2.69
113 114 1.450025 CACTCCGGCCTTTCCTTAAC 58.550 55.000 0.00 0.00 0.00 2.01
128 129 0.707024 TTAACCATGCATGTGGGGGA 59.293 50.000 24.58 3.56 43.77 4.81
146 151 3.280295 GGGAAGACCTTTAGCCTAAAGC 58.720 50.000 17.09 6.28 42.88 3.51
149 154 4.567958 GGAAGACCTTTAGCCTAAAGCCTT 60.568 45.833 20.37 20.37 45.47 4.35
150 155 3.956744 AGACCTTTAGCCTAAAGCCTTG 58.043 45.455 17.09 7.49 45.47 3.61
191 196 9.241317 CATCAAGCACATTGTTAATTAATCTCC 57.759 33.333 0.31 0.00 40.05 3.71
194 199 7.338800 AGCACATTGTTAATTAATCTCCCTG 57.661 36.000 0.31 0.00 0.00 4.45
195 200 5.979517 GCACATTGTTAATTAATCTCCCTGC 59.020 40.000 0.31 1.89 0.00 4.85
198 203 7.703621 CACATTGTTAATTAATCTCCCTGCAAG 59.296 37.037 0.31 0.00 0.00 4.01
219 224 6.321717 CAAGGAAAAGCGCACTTTATCATTA 58.678 36.000 11.47 0.00 45.48 1.90
221 226 7.801716 AGGAAAAGCGCACTTTATCATTATA 57.198 32.000 11.47 0.00 45.48 0.98
315 325 7.009631 GCAGAAAAGAAAAGAGTCCAAAAGAAC 59.990 37.037 0.00 0.00 0.00 3.01
316 326 8.246871 CAGAAAAGAAAAGAGTCCAAAAGAACT 58.753 33.333 0.00 0.00 0.00 3.01
317 327 9.462606 AGAAAAGAAAAGAGTCCAAAAGAACTA 57.537 29.630 0.00 0.00 0.00 2.24
318 328 9.723447 GAAAAGAAAAGAGTCCAAAAGAACTAG 57.277 33.333 0.00 0.00 0.00 2.57
319 329 8.809468 AAAGAAAAGAGTCCAAAAGAACTAGT 57.191 30.769 0.00 0.00 0.00 2.57
320 330 9.901172 AAAGAAAAGAGTCCAAAAGAACTAGTA 57.099 29.630 0.00 0.00 0.00 1.82
321 331 9.549078 AAGAAAAGAGTCCAAAAGAACTAGTAG 57.451 33.333 0.00 0.00 0.00 2.57
322 332 8.151596 AGAAAAGAGTCCAAAAGAACTAGTAGG 58.848 37.037 0.00 0.00 0.00 3.18
323 333 7.613551 AAAGAGTCCAAAAGAACTAGTAGGA 57.386 36.000 0.00 0.00 0.00 2.94
324 334 6.844097 AGAGTCCAAAAGAACTAGTAGGAG 57.156 41.667 0.00 0.00 0.00 3.69
325 335 6.316513 AGAGTCCAAAAGAACTAGTAGGAGT 58.683 40.000 0.00 0.44 0.00 3.85
408 422 3.775654 GCTCTCCCACACTCCCCG 61.776 72.222 0.00 0.00 0.00 5.73
410 424 4.316823 TCTCCCACACTCCCCGCT 62.317 66.667 0.00 0.00 0.00 5.52
615 630 0.400594 CGAGGTGGGGGTTTCTTCTT 59.599 55.000 0.00 0.00 0.00 2.52
616 631 1.610886 CGAGGTGGGGGTTTCTTCTTC 60.611 57.143 0.00 0.00 0.00 2.87
617 632 0.778083 AGGTGGGGGTTTCTTCTTCC 59.222 55.000 0.00 0.00 0.00 3.46
618 633 0.778083 GGTGGGGGTTTCTTCTTCCT 59.222 55.000 0.00 0.00 0.00 3.36
634 654 3.587506 TCTTCCTTCCTTCCCGAAGAATT 59.412 43.478 6.01 0.00 41.57 2.17
636 656 4.755266 TCCTTCCTTCCCGAAGAATTAG 57.245 45.455 6.01 0.00 41.57 1.73
637 657 3.118371 TCCTTCCTTCCCGAAGAATTAGC 60.118 47.826 6.01 0.00 41.57 3.09
665 685 0.035439 TTCCCCCTTTTAGCTGCTCG 60.035 55.000 4.91 0.00 0.00 5.03
676 696 2.982744 GCTGCTCGGTCCTTTTGCC 61.983 63.158 0.00 0.00 0.00 4.52
732 757 3.650950 GCAGGACAGCCAGGGGAA 61.651 66.667 0.00 0.00 36.29 3.97
733 758 2.673523 CAGGACAGCCAGGGGAAG 59.326 66.667 0.00 0.00 36.29 3.46
734 759 1.920325 CAGGACAGCCAGGGGAAGA 60.920 63.158 0.00 0.00 36.29 2.87
737 762 0.112412 GGACAGCCAGGGGAAGAAAA 59.888 55.000 0.00 0.00 0.00 2.29
739 764 0.113190 ACAGCCAGGGGAAGAAAAGG 59.887 55.000 0.00 0.00 0.00 3.11
740 765 0.113190 CAGCCAGGGGAAGAAAAGGT 59.887 55.000 0.00 0.00 0.00 3.50
741 766 0.113190 AGCCAGGGGAAGAAAAGGTG 59.887 55.000 0.00 0.00 0.00 4.00
742 767 0.900182 GCCAGGGGAAGAAAAGGTGG 60.900 60.000 0.00 0.00 0.00 4.61
743 768 0.482887 CCAGGGGAAGAAAAGGTGGT 59.517 55.000 0.00 0.00 0.00 4.16
746 771 1.185618 GGGGAAGAAAAGGTGGTGGC 61.186 60.000 0.00 0.00 0.00 5.01
795 820 2.372172 AGTTGAAGTTGAATCTCCCCGT 59.628 45.455 0.00 0.00 0.00 5.28
840 865 4.390048 TTTCCTCCGCCGGAAAAG 57.610 55.556 7.50 0.00 46.92 2.27
907 947 4.659874 CGCGCCGTGGTTGTTGTC 62.660 66.667 0.00 0.00 0.00 3.18
928 968 4.366684 CTGAAAAGCCCCGCCCCT 62.367 66.667 0.00 0.00 0.00 4.79
929 969 3.886550 CTGAAAAGCCCCGCCCCTT 62.887 63.158 0.00 0.00 0.00 3.95
930 970 3.068691 GAAAAGCCCCGCCCCTTC 61.069 66.667 0.00 0.00 0.00 3.46
961 1001 1.627297 GGCGGAATCCAAGGAGACCT 61.627 60.000 0.00 0.00 33.87 3.85
985 1025 3.277133 CGGTCGGTCGGAAAGGTA 58.723 61.111 0.00 0.00 0.00 3.08
986 1026 1.586028 CGGTCGGTCGGAAAGGTAA 59.414 57.895 0.00 0.00 0.00 2.85
993 1039 3.809279 TCGGTCGGAAAGGTAAAGAAAAC 59.191 43.478 0.00 0.00 0.00 2.43
1323 1381 3.863424 TCGATTCATTTCTTACTCCGCAC 59.137 43.478 0.00 0.00 0.00 5.34
1329 1387 0.759959 TTCTTACTCCGCACCACCAA 59.240 50.000 0.00 0.00 0.00 3.67
1341 1402 2.359900 CACCACCAAATGCCTCTACTC 58.640 52.381 0.00 0.00 0.00 2.59
1342 1403 1.282157 ACCACCAAATGCCTCTACTCC 59.718 52.381 0.00 0.00 0.00 3.85
1344 1405 2.771943 CCACCAAATGCCTCTACTCCTA 59.228 50.000 0.00 0.00 0.00 2.94
1409 1518 4.660938 GGGGCCGAGCAACCACTT 62.661 66.667 0.00 0.00 0.00 3.16
1463 1574 5.790593 TCGCCTTTAGTCAAGTACAGAAAT 58.209 37.500 0.00 0.00 0.00 2.17
1473 1584 8.677148 AGTCAAGTACAGAAATGTGTTGTTAT 57.323 30.769 0.00 0.00 31.46 1.89
1474 1585 9.120538 AGTCAAGTACAGAAATGTGTTGTTATT 57.879 29.630 0.00 0.00 31.46 1.40
1501 1612 7.715265 ACCAATCTGTACTTTAGAATATGCG 57.285 36.000 0.00 0.00 0.00 4.73
1542 1658 4.958581 TCTATCCTCTCTCAAGATTGTGCA 59.041 41.667 0.00 0.00 0.00 4.57
1548 1664 6.070596 TCCTCTCTCAAGATTGTGCATTTAGA 60.071 38.462 0.00 0.00 0.00 2.10
1664 1781 1.132657 TCAGGTTGTGAAGGGGGTAGA 60.133 52.381 0.00 0.00 29.64 2.59
1675 1792 1.777272 AGGGGGTAGATTTGGAGATGC 59.223 52.381 0.00 0.00 0.00 3.91
1676 1793 1.777272 GGGGGTAGATTTGGAGATGCT 59.223 52.381 0.00 0.00 0.00 3.79
1677 1794 2.175715 GGGGGTAGATTTGGAGATGCTT 59.824 50.000 0.00 0.00 0.00 3.91
1716 1839 5.452777 TCGTGCTCATAGATCTGTAATTCG 58.547 41.667 5.18 2.88 0.00 3.34
1768 1892 5.880054 ATGCGCAAACTAAATGTAGTCTT 57.120 34.783 17.11 0.00 39.79 3.01
1769 1893 5.277601 TGCGCAAACTAAATGTAGTCTTC 57.722 39.130 8.16 0.00 39.79 2.87
1788 1912 2.910199 TCAGTCCTAGCATGCATGTTC 58.090 47.619 26.79 12.06 0.00 3.18
1789 1913 1.945394 CAGTCCTAGCATGCATGTTCC 59.055 52.381 26.79 11.33 0.00 3.62
1792 1956 1.417517 TCCTAGCATGCATGTTCCGAT 59.582 47.619 26.79 9.60 0.00 4.18
1799 1963 1.217001 TGCATGTTCCGATATCGCAC 58.783 50.000 19.78 17.16 38.18 5.34
1943 2117 3.694072 TGTTGGTCAACTGGTCAAGAAAG 59.306 43.478 13.96 0.00 41.67 2.62
1979 2153 2.421529 GCCTGGGTTGACTACAATAGGG 60.422 54.545 0.00 0.00 38.32 3.53
1984 2158 2.421529 GGTTGACTACAATAGGGGCTGG 60.422 54.545 0.00 0.00 38.32 4.85
2107 2774 5.644644 GCCTTGATTAATGGCATGCTATAC 58.355 41.667 17.66 9.66 45.46 1.47
2126 2793 6.481644 GCTATACTATGCCTTGATTAGCATCC 59.518 42.308 0.00 0.00 46.58 3.51
2130 2797 2.923121 TGCCTTGATTAGCATCCTGTC 58.077 47.619 0.00 0.00 33.08 3.51
2131 2798 2.225467 GCCTTGATTAGCATCCTGTCC 58.775 52.381 0.00 0.00 0.00 4.02
2135 2802 4.590647 CCTTGATTAGCATCCTGTCCTCTA 59.409 45.833 0.00 0.00 0.00 2.43
2167 2856 8.122472 AGGATTGGACAAATAGTTTGGTAAAG 57.878 34.615 7.28 0.00 44.81 1.85
2237 2926 2.298610 TGTCTCAGGTCCTAGCATACG 58.701 52.381 0.00 0.00 0.00 3.06
2493 3211 7.862873 GGAACTAATATTGTTTAGGCTTGCATC 59.137 37.037 0.00 0.00 34.19 3.91
2494 3212 7.880160 ACTAATATTGTTTAGGCTTGCATCA 57.120 32.000 0.00 0.00 34.19 3.07
2518 3237 1.263356 ATGCTGCTTTCATGCTTGGT 58.737 45.000 0.00 0.00 0.00 3.67
2519 3238 1.042229 TGCTGCTTTCATGCTTGGTT 58.958 45.000 0.00 0.00 0.00 3.67
2529 3248 1.962807 CATGCTTGGTTGGAGTTTGGA 59.037 47.619 0.00 0.00 0.00 3.53
2566 3286 4.389374 CTGAAAGCAAGTTGTCTAGGGAA 58.611 43.478 4.48 0.00 0.00 3.97
2574 3294 4.479786 AGTTGTCTAGGGAAAGATCTGC 57.520 45.455 0.00 0.00 0.00 4.26
2588 3308 6.406177 GGAAAGATCTGCTTTGATTAATGGCA 60.406 38.462 0.00 0.00 46.52 4.92
2592 3312 3.702548 TCTGCTTTGATTAATGGCATGCT 59.297 39.130 18.92 0.00 32.39 3.79
2650 3370 5.505181 AGTGAGGATTGGACACATAGTTT 57.495 39.130 0.00 0.00 37.05 2.66
2652 3372 5.940470 AGTGAGGATTGGACACATAGTTTTC 59.060 40.000 0.00 0.00 37.05 2.29
2654 3374 5.939883 TGAGGATTGGACACATAGTTTTCTG 59.060 40.000 0.00 0.00 0.00 3.02
2688 3408 2.289882 CCTCTGAAGTTCTGATGCACCA 60.290 50.000 12.29 0.00 0.00 4.17
2689 3409 3.001414 CTCTGAAGTTCTGATGCACCAG 58.999 50.000 0.00 0.00 35.55 4.00
2690 3410 2.082231 CTGAAGTTCTGATGCACCAGG 58.918 52.381 8.61 0.00 34.99 4.45
2715 3435 1.685180 GGGTATGTCAAAGGCCCCTTC 60.685 57.143 0.00 0.00 34.84 3.46
2731 3451 5.447757 GCCCCTTCTAGTCTTAACTCTAGA 58.552 45.833 0.00 0.00 40.22 2.43
2733 3453 6.665695 CCCCTTCTAGTCTTAACTCTAGAGT 58.334 44.000 20.00 20.00 41.99 3.24
2749 3469 6.071840 ACTCTAGAGTCTCTAAACGTTGCAAT 60.072 38.462 20.00 0.00 36.92 3.56
2750 3470 6.688578 TCTAGAGTCTCTAAACGTTGCAATT 58.311 36.000 10.79 0.00 0.00 2.32
2751 3471 7.823665 TCTAGAGTCTCTAAACGTTGCAATTA 58.176 34.615 10.79 0.00 0.00 1.40
2752 3472 8.301720 TCTAGAGTCTCTAAACGTTGCAATTAA 58.698 33.333 10.79 0.00 0.00 1.40
2753 3473 7.118422 AGAGTCTCTAAACGTTGCAATTAAC 57.882 36.000 0.59 0.00 0.00 2.01
2754 3474 6.929606 AGAGTCTCTAAACGTTGCAATTAACT 59.070 34.615 0.59 0.03 0.00 2.24
2755 3475 8.086522 AGAGTCTCTAAACGTTGCAATTAACTA 58.913 33.333 0.59 0.00 0.00 2.24
2756 3476 8.773404 AGTCTCTAAACGTTGCAATTAACTAT 57.227 30.769 0.59 0.00 0.00 2.12
2757 3477 9.865321 AGTCTCTAAACGTTGCAATTAACTATA 57.135 29.630 0.59 0.00 0.00 1.31
2777 3497 9.686683 AACTATATTGCTTACTTGATGGTTTCT 57.313 29.630 0.00 0.00 0.00 2.52
2784 3504 7.930217 TGCTTACTTGATGGTTTCTATTATGC 58.070 34.615 0.00 0.00 0.00 3.14
2785 3505 7.555914 TGCTTACTTGATGGTTTCTATTATGCA 59.444 33.333 0.00 0.00 29.95 3.96
2786 3506 8.405531 GCTTACTTGATGGTTTCTATTATGCAA 58.594 33.333 0.00 0.00 0.00 4.08
2787 3507 9.722056 CTTACTTGATGGTTTCTATTATGCAAC 57.278 33.333 0.00 0.00 0.00 4.17
2788 3508 7.701539 ACTTGATGGTTTCTATTATGCAACA 57.298 32.000 0.00 0.00 0.00 3.33
2789 3509 8.121305 ACTTGATGGTTTCTATTATGCAACAA 57.879 30.769 0.00 0.00 0.00 2.83
2790 3510 8.752187 ACTTGATGGTTTCTATTATGCAACAAT 58.248 29.630 0.00 0.00 0.00 2.71
2791 3511 9.590451 CTTGATGGTTTCTATTATGCAACAATT 57.410 29.630 0.00 0.00 0.00 2.32
2792 3512 9.585099 TTGATGGTTTCTATTATGCAACAATTC 57.415 29.630 0.00 0.00 0.00 2.17
2793 3513 8.747471 TGATGGTTTCTATTATGCAACAATTCA 58.253 29.630 0.00 0.00 0.00 2.57
2794 3514 9.241317 GATGGTTTCTATTATGCAACAATTCAG 57.759 33.333 0.00 0.00 0.00 3.02
2795 3515 8.121305 TGGTTTCTATTATGCAACAATTCAGT 57.879 30.769 0.00 0.00 0.00 3.41
2796 3516 8.028354 TGGTTTCTATTATGCAACAATTCAGTG 58.972 33.333 0.00 0.00 0.00 3.66
2797 3517 8.028938 GGTTTCTATTATGCAACAATTCAGTGT 58.971 33.333 0.00 0.00 0.00 3.55
2798 3518 8.853345 GTTTCTATTATGCAACAATTCAGTGTG 58.147 33.333 0.00 0.00 0.00 3.82
2799 3519 6.554419 TCTATTATGCAACAATTCAGTGTGC 58.446 36.000 0.00 0.00 0.00 4.57
2800 3520 4.852134 TTATGCAACAATTCAGTGTGCT 57.148 36.364 0.00 0.00 31.20 4.40
2801 3521 2.495409 TGCAACAATTCAGTGTGCTG 57.505 45.000 3.23 0.00 43.87 4.41
2802 3522 1.134226 GCAACAATTCAGTGTGCTGC 58.866 50.000 0.00 0.00 42.29 5.25
2803 3523 1.269413 GCAACAATTCAGTGTGCTGCT 60.269 47.619 0.00 0.00 42.29 4.24
2804 3524 2.658285 CAACAATTCAGTGTGCTGCTC 58.342 47.619 0.00 0.00 42.29 4.26
2805 3525 2.267174 ACAATTCAGTGTGCTGCTCT 57.733 45.000 0.00 0.00 42.29 4.09
2806 3526 2.579873 ACAATTCAGTGTGCTGCTCTT 58.420 42.857 0.00 0.00 42.29 2.85
2807 3527 2.292569 ACAATTCAGTGTGCTGCTCTTG 59.707 45.455 0.00 1.14 42.29 3.02
2808 3528 0.879765 ATTCAGTGTGCTGCTCTTGC 59.120 50.000 0.00 0.00 42.29 4.01
2809 3529 0.179037 TTCAGTGTGCTGCTCTTGCT 60.179 50.000 0.00 0.00 42.29 3.91
2810 3530 0.681175 TCAGTGTGCTGCTCTTGCTA 59.319 50.000 0.00 0.00 42.29 3.49
2811 3531 0.795085 CAGTGTGCTGCTCTTGCTAC 59.205 55.000 0.00 0.00 40.48 3.58
2812 3532 0.683973 AGTGTGCTGCTCTTGCTACT 59.316 50.000 0.00 0.00 40.48 2.57
2813 3533 1.071385 AGTGTGCTGCTCTTGCTACTT 59.929 47.619 0.00 0.00 40.48 2.24
2814 3534 1.876156 GTGTGCTGCTCTTGCTACTTT 59.124 47.619 0.00 0.00 40.48 2.66
2815 3535 1.875514 TGTGCTGCTCTTGCTACTTTG 59.124 47.619 0.00 0.00 40.48 2.77
2816 3536 2.146342 GTGCTGCTCTTGCTACTTTGA 58.854 47.619 0.00 0.00 40.48 2.69
2817 3537 2.549754 GTGCTGCTCTTGCTACTTTGAA 59.450 45.455 0.00 0.00 40.48 2.69
2818 3538 3.190118 GTGCTGCTCTTGCTACTTTGAAT 59.810 43.478 0.00 0.00 40.48 2.57
2819 3539 3.189910 TGCTGCTCTTGCTACTTTGAATG 59.810 43.478 0.00 0.00 40.48 2.67
2820 3540 3.190118 GCTGCTCTTGCTACTTTGAATGT 59.810 43.478 0.00 0.00 40.48 2.71
2821 3541 4.720090 CTGCTCTTGCTACTTTGAATGTG 58.280 43.478 0.00 0.00 40.48 3.21
2822 3542 4.136796 TGCTCTTGCTACTTTGAATGTGT 58.863 39.130 0.00 0.00 40.48 3.72
2823 3543 4.580167 TGCTCTTGCTACTTTGAATGTGTT 59.420 37.500 0.00 0.00 40.48 3.32
2824 3544 5.762711 TGCTCTTGCTACTTTGAATGTGTTA 59.237 36.000 0.00 0.00 40.48 2.41
2825 3545 6.262049 TGCTCTTGCTACTTTGAATGTGTTAA 59.738 34.615 0.00 0.00 40.48 2.01
2826 3546 6.798959 GCTCTTGCTACTTTGAATGTGTTAAG 59.201 38.462 0.00 0.00 36.03 1.85
2827 3547 6.668323 TCTTGCTACTTTGAATGTGTTAAGC 58.332 36.000 0.00 0.00 0.00 3.09
2828 3548 5.029650 TGCTACTTTGAATGTGTTAAGCG 57.970 39.130 0.00 0.00 0.00 4.68
2829 3549 4.513692 TGCTACTTTGAATGTGTTAAGCGT 59.486 37.500 0.00 0.00 0.00 5.07
2830 3550 5.008217 TGCTACTTTGAATGTGTTAAGCGTT 59.992 36.000 0.00 0.00 0.00 4.84
2831 3551 5.339611 GCTACTTTGAATGTGTTAAGCGTTG 59.660 40.000 0.00 0.00 0.00 4.10
2832 3552 5.493133 ACTTTGAATGTGTTAAGCGTTGA 57.507 34.783 0.00 0.00 0.00 3.18
2833 3553 5.510671 ACTTTGAATGTGTTAAGCGTTGAG 58.489 37.500 0.00 0.00 0.00 3.02
2834 3554 5.295787 ACTTTGAATGTGTTAAGCGTTGAGA 59.704 36.000 0.00 0.00 0.00 3.27
2835 3555 5.743026 TTGAATGTGTTAAGCGTTGAGAA 57.257 34.783 0.00 0.00 0.00 2.87
2836 3556 5.743026 TGAATGTGTTAAGCGTTGAGAAA 57.257 34.783 0.00 0.00 0.00 2.52
2837 3557 5.507077 TGAATGTGTTAAGCGTTGAGAAAC 58.493 37.500 0.00 0.00 0.00 2.78
2838 3558 5.065346 TGAATGTGTTAAGCGTTGAGAAACA 59.935 36.000 0.00 0.00 0.00 2.83
2839 3559 5.689383 ATGTGTTAAGCGTTGAGAAACAT 57.311 34.783 0.00 0.00 33.10 2.71
2840 3560 4.843147 TGTGTTAAGCGTTGAGAAACATG 58.157 39.130 0.00 0.00 33.10 3.21
2841 3561 4.572795 TGTGTTAAGCGTTGAGAAACATGA 59.427 37.500 0.00 0.00 33.10 3.07
2842 3562 5.238432 TGTGTTAAGCGTTGAGAAACATGAT 59.762 36.000 0.00 0.00 33.10 2.45
2843 3563 5.790495 GTGTTAAGCGTTGAGAAACATGATC 59.210 40.000 0.00 0.00 33.10 2.92
2844 3564 5.700832 TGTTAAGCGTTGAGAAACATGATCT 59.299 36.000 0.00 2.15 0.00 2.75
2845 3565 4.675190 AAGCGTTGAGAAACATGATCTG 57.325 40.909 0.00 0.00 0.00 2.90
2846 3566 3.930336 AGCGTTGAGAAACATGATCTGA 58.070 40.909 0.00 0.00 0.00 3.27
2847 3567 3.931468 AGCGTTGAGAAACATGATCTGAG 59.069 43.478 0.00 0.00 0.00 3.35
2848 3568 3.681897 GCGTTGAGAAACATGATCTGAGT 59.318 43.478 0.00 0.00 0.00 3.41
2849 3569 4.435253 GCGTTGAGAAACATGATCTGAGTG 60.435 45.833 0.00 0.00 0.00 3.51
2850 3570 4.092529 CGTTGAGAAACATGATCTGAGTGG 59.907 45.833 0.00 0.00 0.00 4.00
2851 3571 5.240891 GTTGAGAAACATGATCTGAGTGGA 58.759 41.667 0.00 0.00 0.00 4.02
2852 3572 5.488262 TGAGAAACATGATCTGAGTGGAA 57.512 39.130 0.00 0.00 0.00 3.53
2853 3573 5.485620 TGAGAAACATGATCTGAGTGGAAG 58.514 41.667 0.00 0.00 0.00 3.46
2854 3574 5.246883 TGAGAAACATGATCTGAGTGGAAGA 59.753 40.000 0.00 0.00 0.00 2.87
2855 3575 6.119240 AGAAACATGATCTGAGTGGAAGAA 57.881 37.500 0.00 0.00 0.00 2.52
2856 3576 6.171921 AGAAACATGATCTGAGTGGAAGAAG 58.828 40.000 0.00 0.00 0.00 2.85
2857 3577 5.495926 AACATGATCTGAGTGGAAGAAGT 57.504 39.130 0.00 0.00 0.00 3.01
2858 3578 6.611613 AACATGATCTGAGTGGAAGAAGTA 57.388 37.500 0.00 0.00 0.00 2.24
2859 3579 6.219417 ACATGATCTGAGTGGAAGAAGTAG 57.781 41.667 0.00 0.00 0.00 2.57
2860 3580 5.954752 ACATGATCTGAGTGGAAGAAGTAGA 59.045 40.000 0.00 0.00 0.00 2.59
2861 3581 6.438741 ACATGATCTGAGTGGAAGAAGTAGAA 59.561 38.462 0.00 0.00 0.00 2.10
2862 3582 6.522625 TGATCTGAGTGGAAGAAGTAGAAG 57.477 41.667 0.00 0.00 0.00 2.85
2863 3583 5.420421 TGATCTGAGTGGAAGAAGTAGAAGG 59.580 44.000 0.00 0.00 0.00 3.46
2864 3584 3.511934 TCTGAGTGGAAGAAGTAGAAGGC 59.488 47.826 0.00 0.00 0.00 4.35
2865 3585 3.511477 TGAGTGGAAGAAGTAGAAGGCT 58.489 45.455 0.00 0.00 0.00 4.58
2866 3586 4.673968 TGAGTGGAAGAAGTAGAAGGCTA 58.326 43.478 0.00 0.00 0.00 3.93
2867 3587 5.084519 TGAGTGGAAGAAGTAGAAGGCTAA 58.915 41.667 0.00 0.00 0.00 3.09
2868 3588 5.542635 TGAGTGGAAGAAGTAGAAGGCTAAA 59.457 40.000 0.00 0.00 0.00 1.85
2869 3589 6.042781 TGAGTGGAAGAAGTAGAAGGCTAAAA 59.957 38.462 0.00 0.00 0.00 1.52
2870 3590 6.468543 AGTGGAAGAAGTAGAAGGCTAAAAG 58.531 40.000 0.00 0.00 0.00 2.27
2871 3591 6.043358 AGTGGAAGAAGTAGAAGGCTAAAAGT 59.957 38.462 0.00 0.00 0.00 2.66
2872 3592 6.147985 GTGGAAGAAGTAGAAGGCTAAAAGTG 59.852 42.308 0.00 0.00 0.00 3.16
2873 3593 5.644206 GGAAGAAGTAGAAGGCTAAAAGTGG 59.356 44.000 0.00 0.00 0.00 4.00
2874 3594 5.827326 AGAAGTAGAAGGCTAAAAGTGGT 57.173 39.130 0.00 0.00 0.00 4.16
2875 3595 6.189036 AGAAGTAGAAGGCTAAAAGTGGTT 57.811 37.500 0.00 0.00 0.00 3.67
2876 3596 7.312415 AGAAGTAGAAGGCTAAAAGTGGTTA 57.688 36.000 0.00 0.00 0.00 2.85
2877 3597 7.387643 AGAAGTAGAAGGCTAAAAGTGGTTAG 58.612 38.462 0.00 0.00 34.71 2.34
2890 3610 6.465439 AAAGTGGTTAGCATAAATAAGGGC 57.535 37.500 0.00 0.00 0.00 5.19
2891 3611 5.124036 AGTGGTTAGCATAAATAAGGGCA 57.876 39.130 0.00 0.00 0.00 5.36
2892 3612 5.515106 AGTGGTTAGCATAAATAAGGGCAA 58.485 37.500 0.00 0.00 0.00 4.52
2893 3613 6.136155 AGTGGTTAGCATAAATAAGGGCAAT 58.864 36.000 0.00 0.00 0.00 3.56
2894 3614 7.294584 AGTGGTTAGCATAAATAAGGGCAATA 58.705 34.615 0.00 0.00 0.00 1.90
2895 3615 7.448469 AGTGGTTAGCATAAATAAGGGCAATAG 59.552 37.037 0.00 0.00 0.00 1.73
2896 3616 6.208599 TGGTTAGCATAAATAAGGGCAATAGC 59.791 38.462 0.00 0.00 41.10 2.97
2897 3617 6.208599 GGTTAGCATAAATAAGGGCAATAGCA 59.791 38.462 0.00 0.00 44.61 3.49
2898 3618 5.972107 AGCATAAATAAGGGCAATAGCAG 57.028 39.130 0.00 0.00 44.61 4.24
2899 3619 5.634118 AGCATAAATAAGGGCAATAGCAGA 58.366 37.500 0.00 0.00 44.61 4.26
2900 3620 5.474876 AGCATAAATAAGGGCAATAGCAGAC 59.525 40.000 0.00 0.00 44.61 3.51
2901 3621 5.617751 GCATAAATAAGGGCAATAGCAGACG 60.618 44.000 0.00 0.00 44.61 4.18
2902 3622 3.560636 AATAAGGGCAATAGCAGACGT 57.439 42.857 0.00 0.00 44.61 4.34
2903 3623 2.309528 TAAGGGCAATAGCAGACGTG 57.690 50.000 0.00 0.00 44.61 4.49
2904 3624 0.613260 AAGGGCAATAGCAGACGTGA 59.387 50.000 0.00 0.00 44.61 4.35
2905 3625 0.108138 AGGGCAATAGCAGACGTGAC 60.108 55.000 0.00 0.00 44.61 3.67
2914 3634 6.074782 GCAATAGCAGACGTGACTTTAGATAC 60.075 42.308 0.00 0.00 41.58 2.24
2915 3635 6.694877 ATAGCAGACGTGACTTTAGATACA 57.305 37.500 0.00 0.00 0.00 2.29
2936 3656 6.694877 ACACAACTATCTTACTCGAGCATA 57.305 37.500 13.61 3.27 0.00 3.14
2937 3657 6.496571 ACACAACTATCTTACTCGAGCATAC 58.503 40.000 13.61 0.00 0.00 2.39
2938 3658 6.319152 ACACAACTATCTTACTCGAGCATACT 59.681 38.462 13.61 0.00 0.00 2.12
2939 3659 7.148052 ACACAACTATCTTACTCGAGCATACTT 60.148 37.037 13.61 0.00 0.00 2.24
2940 3660 8.343366 CACAACTATCTTACTCGAGCATACTTA 58.657 37.037 13.61 0.00 0.00 2.24
2941 3661 8.561212 ACAACTATCTTACTCGAGCATACTTAG 58.439 37.037 13.61 9.46 0.00 2.18
2979 3701 7.290813 AGGTTTAGATCAAGAAACAGGACTTT 58.709 34.615 15.54 0.00 37.30 2.66
2996 3723 8.428852 ACAGGACTTTAAGGTGCATTTTATTTT 58.571 29.630 11.70 0.00 0.00 1.82
3059 3786 7.732996 ACTGGTTACTTGTGTAGTTAGTCATT 58.267 34.615 0.00 0.00 38.33 2.57
3061 3788 9.701098 CTGGTTACTTGTGTAGTTAGTCATTTA 57.299 33.333 0.00 0.00 38.33 1.40
3131 3859 0.798776 CTTCAAGGTAGGCAGTTGCG 59.201 55.000 0.00 0.00 43.26 4.85
3185 3913 9.577110 TCATGCAAAAAGATAGAGCAAATTTAG 57.423 29.630 0.00 0.00 38.85 1.85
3186 3914 9.362539 CATGCAAAAAGATAGAGCAAATTTAGT 57.637 29.630 0.00 0.00 38.85 2.24
3188 3916 9.840427 TGCAAAAAGATAGAGCAAATTTAGTAC 57.160 29.630 0.00 0.00 31.42 2.73
3227 3955 7.673504 TGATTCACTGAATTTGGAATTTAGGGA 59.326 33.333 5.73 6.16 31.89 4.20
3229 3957 5.714806 TCACTGAATTTGGAATTTAGGGACC 59.285 40.000 6.16 0.00 0.00 4.46
3230 3958 5.023452 ACTGAATTTGGAATTTAGGGACCC 58.977 41.667 0.59 0.59 0.00 4.46
3238 3966 5.581975 TGGAATTTAGGGACCCGTTTAAAT 58.418 37.500 4.40 7.59 0.00 1.40
3240 3968 5.653330 GGAATTTAGGGACCCGTTTAAATCA 59.347 40.000 13.84 0.00 0.00 2.57
3264 3992 1.818060 TCTGGCGCAGTTGCAATTTAT 59.182 42.857 10.83 0.00 42.21 1.40
3265 3993 3.013219 TCTGGCGCAGTTGCAATTTATA 58.987 40.909 10.83 0.00 42.21 0.98
3266 3994 3.441922 TCTGGCGCAGTTGCAATTTATAA 59.558 39.130 10.83 0.00 42.21 0.98
3267 3995 4.097741 TCTGGCGCAGTTGCAATTTATAAT 59.902 37.500 10.83 0.00 42.21 1.28
3268 3996 4.753233 TGGCGCAGTTGCAATTTATAATT 58.247 34.783 10.83 0.00 42.21 1.40
3269 3997 5.895928 TGGCGCAGTTGCAATTTATAATTA 58.104 33.333 10.83 0.00 42.21 1.40
3270 3998 6.511416 TGGCGCAGTTGCAATTTATAATTAT 58.489 32.000 10.83 2.97 42.21 1.28
3271 3999 6.420306 TGGCGCAGTTGCAATTTATAATTATG 59.580 34.615 10.83 0.00 42.21 1.90
3272 4000 6.640499 GGCGCAGTTGCAATTTATAATTATGA 59.360 34.615 10.83 0.00 42.21 2.15
3273 4001 7.329226 GGCGCAGTTGCAATTTATAATTATGAT 59.671 33.333 10.83 0.00 42.21 2.45
3274 4002 9.340695 GCGCAGTTGCAATTTATAATTATGATA 57.659 29.630 0.59 0.00 42.21 2.15
3292 4020 9.920946 ATTATGATACCAAGTGTATTTTCTGGT 57.079 29.630 0.00 0.00 40.31 4.00
3300 4028 9.793259 ACCAAGTGTATTTTCTGGTATATATGG 57.207 33.333 0.00 0.00 0.00 2.74
3311 4039 8.783660 TTCTGGTATATATGGAAGTCTGAAGT 57.216 34.615 0.00 0.00 0.00 3.01
3312 4040 8.410673 TCTGGTATATATGGAAGTCTGAAGTC 57.589 38.462 0.00 0.00 0.00 3.01
3313 4041 8.004801 TCTGGTATATATGGAAGTCTGAAGTCA 58.995 37.037 0.00 0.00 0.00 3.41
3314 4042 8.183104 TGGTATATATGGAAGTCTGAAGTCAG 57.817 38.462 1.65 1.65 45.08 3.51
3315 4043 7.233553 TGGTATATATGGAAGTCTGAAGTCAGG 59.766 40.741 8.42 0.00 43.91 3.86
3316 4044 6.678568 ATATATGGAAGTCTGAAGTCAGGG 57.321 41.667 8.42 0.00 43.91 4.45
3317 4045 2.103153 TGGAAGTCTGAAGTCAGGGT 57.897 50.000 8.42 0.00 43.91 4.34
3318 4046 1.694150 TGGAAGTCTGAAGTCAGGGTG 59.306 52.381 8.42 0.00 43.91 4.61
3319 4047 1.694696 GGAAGTCTGAAGTCAGGGTGT 59.305 52.381 8.42 0.00 43.91 4.16
3320 4048 2.897969 GGAAGTCTGAAGTCAGGGTGTA 59.102 50.000 8.42 0.00 43.91 2.90
3321 4049 3.306156 GGAAGTCTGAAGTCAGGGTGTAC 60.306 52.174 8.42 0.00 43.91 2.90
3383 4112 4.159135 GTGGAGGATTTGTTGAATCTGCAT 59.841 41.667 0.00 0.00 43.08 3.96
3400 4131 6.707440 TCTGCATTACTTTTTCCAGACAAA 57.293 33.333 0.00 0.00 0.00 2.83
3471 4202 3.371285 CGTTGGCCTTCTAAAGCTCTAAC 59.629 47.826 3.32 0.00 0.00 2.34
3498 4229 9.347240 AGCAGCACTATCAGTTAATGAATTAAT 57.653 29.630 0.00 0.00 42.53 1.40
3522 4253 4.243007 GGCACCAATAAGTAATCATGCC 57.757 45.455 0.00 0.00 44.11 4.40
3530 4261 6.148480 CCAATAAGTAATCATGCCAGCTAGTC 59.852 42.308 0.00 0.00 0.00 2.59
3537 4268 3.365472 TCATGCCAGCTAGTCTCAAGTA 58.635 45.455 0.00 0.00 0.00 2.24
3546 4277 5.409520 CAGCTAGTCTCAAGTAAAATGCACA 59.590 40.000 0.00 0.00 0.00 4.57
3578 4309 6.963049 TTCGAAATTCTAAGCTGTTAGTCC 57.037 37.500 0.00 0.00 37.50 3.85
3579 4310 6.032956 TCGAAATTCTAAGCTGTTAGTCCA 57.967 37.500 0.00 0.00 37.50 4.02
3624 4357 3.655777 ACATGGGGAGGTCAGAACTAAAA 59.344 43.478 0.00 0.00 0.00 1.52
3629 4362 4.263331 GGGGAGGTCAGAACTAAAATGTCA 60.263 45.833 0.00 0.00 0.00 3.58
3654 4387 3.054802 AGGTAGGCCTCAAAAGATCACTG 60.055 47.826 9.68 0.00 42.67 3.66
3773 4506 5.183228 TGAGTTGGAATACCGGATCTTTTC 58.817 41.667 9.46 3.25 39.42 2.29
3787 4520 5.062308 CGGATCTTTTCTCAACCTTCTAACG 59.938 44.000 0.00 0.00 0.00 3.18
3795 4528 2.565391 TCAACCTTCTAACGGCTCATCA 59.435 45.455 0.00 0.00 0.00 3.07
3873 4606 2.026449 CCTTCAGAAGCTCATCACCCTT 60.026 50.000 4.41 0.00 0.00 3.95
3958 4694 1.740297 CGAGAAGGAGGAGAAGTCGA 58.260 55.000 0.00 0.00 0.00 4.20
4077 4813 0.260816 ATGCAGAGGCCCATGTCAAT 59.739 50.000 0.00 0.00 40.13 2.57
4376 5149 2.787473 AGATCGGGTTTCAGAATGCA 57.213 45.000 0.00 0.00 34.76 3.96
4385 5158 4.278419 GGGTTTCAGAATGCACTTTGTAGT 59.722 41.667 0.00 0.00 34.76 2.73
4406 5179 6.605471 AGTACTGATTAGACCATGTGTTGA 57.395 37.500 0.00 0.00 0.00 3.18
4426 5199 8.462016 GTGTTGAAATGCAGTAATTTATCTCCT 58.538 33.333 0.00 0.00 29.89 3.69
4451 6265 5.499139 TCTCGCAAAGATTTTGAACAGTT 57.501 34.783 5.77 0.00 0.00 3.16
4501 6315 9.991906 CCAGAAAAGGAAAATCATAATATGCAT 57.008 29.630 3.79 3.79 0.00 3.96
4534 6355 8.553459 TTTTGTTTTTGTTAAGGCATCTTGAA 57.447 26.923 0.00 0.00 34.59 2.69
4608 6430 7.690952 AGTACTGTTTACTTTTTGTTGGTCA 57.309 32.000 0.00 0.00 0.00 4.02
4647 6469 5.804639 ACCAGTGTACTATCTTTGCATTGA 58.195 37.500 0.00 0.00 0.00 2.57
4648 6470 5.877012 ACCAGTGTACTATCTTTGCATTGAG 59.123 40.000 0.00 0.00 0.00 3.02
4675 6497 9.129532 GATCTCCTTACAATTTGGAAATCATCT 57.870 33.333 0.78 0.00 30.10 2.90
4680 6502 8.090214 CCTTACAATTTGGAAATCATCTTGTGT 58.910 33.333 0.78 0.00 34.41 3.72
4681 6503 8.815141 TTACAATTTGGAAATCATCTTGTGTG 57.185 30.769 0.78 0.00 34.41 3.82
4732 6572 7.219484 AGGTTTTCATGATTCACTTAGGTTG 57.781 36.000 0.00 0.00 0.00 3.77
4737 6577 8.506168 TTTCATGATTCACTTAGGTTGGTATC 57.494 34.615 0.00 0.00 0.00 2.24
4742 6582 7.792032 TGATTCACTTAGGTTGGTATCTAAGG 58.208 38.462 12.74 4.56 43.89 2.69
4744 6584 5.278061 TCACTTAGGTTGGTATCTAAGGCT 58.722 41.667 12.74 0.00 43.89 4.58
4788 6666 9.964303 ATTGCAGTTGAAATAATTATTGCGATA 57.036 25.926 11.42 0.00 0.00 2.92
4978 6857 6.759497 AGACCTCCAAAGATTTTATTTCCG 57.241 37.500 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.809331 TGATCTCATCTTTTTGTAATGTGTTGC 59.191 33.333 0.00 0.00 0.00 4.17
3 4 8.853077 TCTGATCTCATCTTTTTGTAATGTGT 57.147 30.769 0.00 0.00 0.00 3.72
6 7 9.038803 TCGATCTGATCTCATCTTTTTGTAATG 57.961 33.333 15.16 0.00 0.00 1.90
7 8 9.775854 ATCGATCTGATCTCATCTTTTTGTAAT 57.224 29.630 15.16 0.00 28.49 1.89
9 10 9.684448 GTATCGATCTGATCTCATCTTTTTGTA 57.316 33.333 15.16 0.00 38.57 2.41
10 11 8.420222 AGTATCGATCTGATCTCATCTTTTTGT 58.580 33.333 15.16 0.00 38.57 2.83
11 12 8.815141 AGTATCGATCTGATCTCATCTTTTTG 57.185 34.615 15.16 0.00 38.57 2.44
13 14 9.295825 ACTAGTATCGATCTGATCTCATCTTTT 57.704 33.333 15.16 0.00 38.57 2.27
14 15 8.862325 ACTAGTATCGATCTGATCTCATCTTT 57.138 34.615 15.16 0.00 38.57 2.52
15 16 9.599866 CTACTAGTATCGATCTGATCTCATCTT 57.400 37.037 15.16 0.62 38.57 2.40
16 17 8.977412 TCTACTAGTATCGATCTGATCTCATCT 58.023 37.037 15.16 10.47 38.57 2.90
17 18 9.764363 ATCTACTAGTATCGATCTGATCTCATC 57.236 37.037 15.16 4.40 38.57 2.92
18 19 9.546428 CATCTACTAGTATCGATCTGATCTCAT 57.454 37.037 15.16 9.46 38.57 2.90
19 20 7.984617 CCATCTACTAGTATCGATCTGATCTCA 59.015 40.741 15.16 2.74 38.57 3.27
20 21 7.985184 ACCATCTACTAGTATCGATCTGATCTC 59.015 40.741 15.16 4.10 38.57 2.75
21 22 7.857456 ACCATCTACTAGTATCGATCTGATCT 58.143 38.462 15.16 0.73 38.57 2.75
22 23 9.602568 TTACCATCTACTAGTATCGATCTGATC 57.397 37.037 0.00 7.60 38.57 2.92
24 25 9.961264 AATTACCATCTACTAGTATCGATCTGA 57.039 33.333 0.00 0.00 0.00 3.27
28 29 9.640963 GCAAAATTACCATCTACTAGTATCGAT 57.359 33.333 2.33 2.16 0.00 3.59
29 30 8.086522 GGCAAAATTACCATCTACTAGTATCGA 58.913 37.037 2.33 0.00 0.00 3.59
30 31 7.331193 GGGCAAAATTACCATCTACTAGTATCG 59.669 40.741 2.33 0.00 0.00 2.92
31 32 8.154856 TGGGCAAAATTACCATCTACTAGTATC 58.845 37.037 2.33 0.00 0.00 2.24
32 33 7.937394 GTGGGCAAAATTACCATCTACTAGTAT 59.063 37.037 2.33 0.00 36.54 2.12
33 34 7.277396 GTGGGCAAAATTACCATCTACTAGTA 58.723 38.462 1.89 1.89 36.54 1.82
34 35 6.120220 GTGGGCAAAATTACCATCTACTAGT 58.880 40.000 0.00 0.00 36.54 2.57
35 36 5.531287 GGTGGGCAAAATTACCATCTACTAG 59.469 44.000 0.00 0.00 36.54 2.57
36 37 5.192923 AGGTGGGCAAAATTACCATCTACTA 59.807 40.000 0.00 0.00 43.66 1.82
37 38 4.017499 AGGTGGGCAAAATTACCATCTACT 60.017 41.667 0.00 0.00 43.66 2.57
38 39 4.278310 AGGTGGGCAAAATTACCATCTAC 58.722 43.478 0.00 0.00 43.66 2.59
39 40 4.601406 AGGTGGGCAAAATTACCATCTA 57.399 40.909 0.00 0.00 43.66 1.98
40 41 3.473113 AGGTGGGCAAAATTACCATCT 57.527 42.857 0.00 0.00 40.80 2.90
41 42 3.066203 CGTAGGTGGGCAAAATTACCATC 59.934 47.826 0.00 0.00 36.54 3.51
42 43 3.020984 CGTAGGTGGGCAAAATTACCAT 58.979 45.455 0.00 0.00 36.54 3.55
43 44 2.040012 TCGTAGGTGGGCAAAATTACCA 59.960 45.455 0.00 0.00 35.66 3.25
44 45 2.713877 TCGTAGGTGGGCAAAATTACC 58.286 47.619 0.00 0.00 0.00 2.85
45 46 4.380128 CCTTTCGTAGGTGGGCAAAATTAC 60.380 45.833 0.00 0.00 39.39 1.89
46 47 3.759618 CCTTTCGTAGGTGGGCAAAATTA 59.240 43.478 0.00 0.00 39.39 1.40
47 48 2.560981 CCTTTCGTAGGTGGGCAAAATT 59.439 45.455 0.00 0.00 39.39 1.82
48 49 2.167662 CCTTTCGTAGGTGGGCAAAAT 58.832 47.619 0.00 0.00 39.39 1.82
49 50 1.611519 CCTTTCGTAGGTGGGCAAAA 58.388 50.000 0.00 0.00 39.39 2.44
50 51 3.332706 CCTTTCGTAGGTGGGCAAA 57.667 52.632 0.00 0.00 39.39 3.68
59 60 1.270625 TGCTGGACCAACCTTTCGTAG 60.271 52.381 0.00 0.00 39.86 3.51
60 61 0.759959 TGCTGGACCAACCTTTCGTA 59.240 50.000 0.00 0.00 39.86 3.43
61 62 0.110486 ATGCTGGACCAACCTTTCGT 59.890 50.000 0.00 0.00 39.86 3.85
62 63 1.068333 CAATGCTGGACCAACCTTTCG 60.068 52.381 0.00 0.00 39.86 3.46
63 64 1.337167 GCAATGCTGGACCAACCTTTC 60.337 52.381 0.00 0.00 39.86 2.62
64 65 0.681175 GCAATGCTGGACCAACCTTT 59.319 50.000 0.00 0.00 39.86 3.11
65 66 0.178953 AGCAATGCTGGACCAACCTT 60.179 50.000 7.07 0.00 37.57 3.50
66 67 0.610232 GAGCAATGCTGGACCAACCT 60.610 55.000 14.48 0.00 39.88 3.50
67 68 0.895100 TGAGCAATGCTGGACCAACC 60.895 55.000 14.48 0.00 39.88 3.77
68 69 1.180029 ATGAGCAATGCTGGACCAAC 58.820 50.000 14.48 0.00 39.88 3.77
69 70 2.804986 TATGAGCAATGCTGGACCAA 57.195 45.000 14.48 0.00 39.88 3.67
70 71 2.646930 CTTATGAGCAATGCTGGACCA 58.353 47.619 14.48 4.35 39.88 4.02
71 72 1.952296 CCTTATGAGCAATGCTGGACC 59.048 52.381 14.48 0.00 39.88 4.46
72 73 2.877168 CTCCTTATGAGCAATGCTGGAC 59.123 50.000 14.48 0.00 39.88 4.02
73 74 3.204306 CTCCTTATGAGCAATGCTGGA 57.796 47.619 14.48 11.87 39.88 3.86
91 92 2.436824 GGAAAGGCCGGAGTGCTC 60.437 66.667 5.05 0.00 0.00 4.26
100 101 1.555967 TGCATGGTTAAGGAAAGGCC 58.444 50.000 0.00 0.00 0.00 5.19
101 102 2.497273 ACATGCATGGTTAAGGAAAGGC 59.503 45.455 29.41 0.00 0.00 4.35
103 104 3.119029 CCCACATGCATGGTTAAGGAAAG 60.119 47.826 29.41 7.84 38.16 2.62
113 114 1.039233 GTCTTCCCCCACATGCATGG 61.039 60.000 29.41 15.39 39.71 3.66
146 151 0.457337 GCCGCTGCAAATCTTCAAGG 60.457 55.000 0.00 0.00 37.47 3.61
149 154 4.077844 TGCCGCTGCAAATCTTCA 57.922 50.000 0.00 0.00 46.66 3.02
180 185 6.096846 GCTTTTCCTTGCAGGGAGATTAATTA 59.903 38.462 17.98 0.00 35.59 1.40
191 196 1.372128 GTGCGCTTTTCCTTGCAGG 60.372 57.895 9.73 0.00 38.14 4.85
194 199 2.415697 TAAAGTGCGCTTTTCCTTGC 57.584 45.000 28.66 0.00 41.78 4.01
195 200 4.159377 TGATAAAGTGCGCTTTTCCTTG 57.841 40.909 28.66 0.00 41.78 3.61
221 226 7.879677 CCTTTGGGCTCTTTCTTTTTCATTAAT 59.120 33.333 0.00 0.00 0.00 1.40
289 295 6.564328 TCTTTTGGACTCTTTTCTTTTCTGC 58.436 36.000 0.00 0.00 0.00 4.26
295 301 9.549078 CTACTAGTTCTTTTGGACTCTTTTCTT 57.451 33.333 0.00 0.00 0.00 2.52
302 308 6.593268 ACTCCTACTAGTTCTTTTGGACTC 57.407 41.667 0.00 0.00 0.00 3.36
315 325 6.225318 CAGCCACTACTACTACTCCTACTAG 58.775 48.000 0.00 0.00 0.00 2.57
316 326 5.071519 CCAGCCACTACTACTACTCCTACTA 59.928 48.000 0.00 0.00 0.00 1.82
317 327 4.141436 CCAGCCACTACTACTACTCCTACT 60.141 50.000 0.00 0.00 0.00 2.57
318 328 4.136051 CCAGCCACTACTACTACTCCTAC 58.864 52.174 0.00 0.00 0.00 3.18
319 329 3.137913 CCCAGCCACTACTACTACTCCTA 59.862 52.174 0.00 0.00 0.00 2.94
320 330 2.091775 CCCAGCCACTACTACTACTCCT 60.092 54.545 0.00 0.00 0.00 3.69
321 331 2.091994 TCCCAGCCACTACTACTACTCC 60.092 54.545 0.00 0.00 0.00 3.85
322 332 3.294038 TCCCAGCCACTACTACTACTC 57.706 52.381 0.00 0.00 0.00 2.59
323 333 3.752359 TTCCCAGCCACTACTACTACT 57.248 47.619 0.00 0.00 0.00 2.57
324 334 3.958798 TCATTCCCAGCCACTACTACTAC 59.041 47.826 0.00 0.00 0.00 2.73
325 335 4.215908 CTCATTCCCAGCCACTACTACTA 58.784 47.826 0.00 0.00 0.00 1.82
333 343 1.751927 CCTGCTCATTCCCAGCCAC 60.752 63.158 0.00 0.00 35.89 5.01
385 399 0.389166 GAGTGTGGGAGAGCGTGAAG 60.389 60.000 0.00 0.00 0.00 3.02
386 400 1.666011 GAGTGTGGGAGAGCGTGAA 59.334 57.895 0.00 0.00 0.00 3.18
387 401 2.276116 GGAGTGTGGGAGAGCGTGA 61.276 63.158 0.00 0.00 0.00 4.35
388 402 2.262915 GGAGTGTGGGAGAGCGTG 59.737 66.667 0.00 0.00 0.00 5.34
389 403 2.997897 GGGAGTGTGGGAGAGCGT 60.998 66.667 0.00 0.00 0.00 5.07
390 404 3.775654 GGGGAGTGTGGGAGAGCG 61.776 72.222 0.00 0.00 0.00 5.03
391 405 3.775654 CGGGGAGTGTGGGAGAGC 61.776 72.222 0.00 0.00 0.00 4.09
392 406 3.775654 GCGGGGAGTGTGGGAGAG 61.776 72.222 0.00 0.00 0.00 3.20
393 407 4.316823 AGCGGGGAGTGTGGGAGA 62.317 66.667 0.00 0.00 0.00 3.71
394 408 3.775654 GAGCGGGGAGTGTGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
408 422 3.403558 GGGGGAGTGGAGTGGAGC 61.404 72.222 0.00 0.00 0.00 4.70
502 517 4.227134 CACGGGAGGATGGAGCCG 62.227 72.222 0.00 0.00 0.00 5.52
615 630 3.118371 GCTAATTCTTCGGGAAGGAAGGA 60.118 47.826 8.46 0.00 42.88 3.36
616 631 3.118223 AGCTAATTCTTCGGGAAGGAAGG 60.118 47.826 8.46 0.00 42.88 3.46
617 632 3.873952 CAGCTAATTCTTCGGGAAGGAAG 59.126 47.826 8.46 0.00 43.78 3.46
618 633 3.517901 TCAGCTAATTCTTCGGGAAGGAA 59.482 43.478 8.46 2.99 38.88 3.36
634 654 1.298953 AGGGGGAAGCAAATCAGCTA 58.701 50.000 0.00 0.00 45.89 3.32
636 656 1.269958 AAAGGGGGAAGCAAATCAGC 58.730 50.000 0.00 0.00 0.00 4.26
637 657 3.118992 GCTAAAAGGGGGAAGCAAATCAG 60.119 47.826 0.00 0.00 35.05 2.90
731 756 1.106944 CACCGCCACCACCTTTTCTT 61.107 55.000 0.00 0.00 0.00 2.52
732 757 1.528309 CACCGCCACCACCTTTTCT 60.528 57.895 0.00 0.00 0.00 2.52
733 758 2.561037 CCACCGCCACCACCTTTTC 61.561 63.158 0.00 0.00 0.00 2.29
734 759 2.520741 CCACCGCCACCACCTTTT 60.521 61.111 0.00 0.00 0.00 2.27
739 764 3.785122 AAGAACCCACCGCCACCAC 62.785 63.158 0.00 0.00 0.00 4.16
740 765 3.494254 AAGAACCCACCGCCACCA 61.494 61.111 0.00 0.00 0.00 4.17
741 766 2.983592 CAAGAACCCACCGCCACC 60.984 66.667 0.00 0.00 0.00 4.61
742 767 2.203294 ACAAGAACCCACCGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
743 768 2.112297 GACAAGAACCCACCGCCA 59.888 61.111 0.00 0.00 0.00 5.69
746 771 3.047877 GCGGACAAGAACCCACCG 61.048 66.667 0.00 0.00 45.26 4.94
773 798 2.744202 CGGGGAGATTCAACTTCAACTG 59.256 50.000 0.00 0.00 0.00 3.16
795 820 4.508128 GCGAATCCAGTCGGCGGA 62.508 66.667 7.21 3.18 41.40 5.54
927 967 0.743345 CCGCCCGGGAACTTAAGAAG 60.743 60.000 29.31 0.79 38.47 2.85
928 968 1.193462 TCCGCCCGGGAACTTAAGAA 61.193 55.000 29.31 0.00 43.62 2.52
929 969 1.610086 TCCGCCCGGGAACTTAAGA 60.610 57.895 29.31 6.01 43.62 2.10
930 970 2.983791 TCCGCCCGGGAACTTAAG 59.016 61.111 29.31 0.00 43.62 1.85
979 1019 1.965643 GGCCCCGTTTTCTTTACCTTT 59.034 47.619 0.00 0.00 0.00 3.11
980 1020 1.133419 TGGCCCCGTTTTCTTTACCTT 60.133 47.619 0.00 0.00 0.00 3.50
983 1023 2.164338 TCATGGCCCCGTTTTCTTTAC 58.836 47.619 0.00 0.00 0.00 2.01
984 1024 2.588464 TCATGGCCCCGTTTTCTTTA 57.412 45.000 0.00 0.00 0.00 1.85
985 1025 1.824852 GATCATGGCCCCGTTTTCTTT 59.175 47.619 0.00 0.00 0.00 2.52
986 1026 1.474330 GATCATGGCCCCGTTTTCTT 58.526 50.000 0.00 0.00 0.00 2.52
1278 1324 0.107945 AAGAAGGCTGACCGATGAGC 60.108 55.000 0.00 0.00 42.76 4.26
1323 1381 1.561542 AGGAGTAGAGGCATTTGGTGG 59.438 52.381 0.00 0.00 0.00 4.61
1329 1387 6.518516 ACTAGTAGTAGGAGTAGAGGCATT 57.481 41.667 9.42 0.00 0.00 3.56
1341 1402 6.919775 ATCCCAATGCTAACTAGTAGTAGG 57.080 41.667 2.50 0.89 31.78 3.18
1342 1403 8.516234 CACTATCCCAATGCTAACTAGTAGTAG 58.484 40.741 2.50 2.87 31.78 2.57
1344 1405 6.267928 CCACTATCCCAATGCTAACTAGTAGT 59.732 42.308 0.00 0.00 31.78 2.73
1409 1518 4.628074 GAAGTGACTAGTAGTTGCCAACA 58.372 43.478 10.69 0.00 0.00 3.33
1413 1522 2.490903 TCCGAAGTGACTAGTAGTTGCC 59.509 50.000 3.85 0.00 0.00 4.52
1419 1528 4.438336 CGAAAGCATCCGAAGTGACTAGTA 60.438 45.833 0.00 0.00 0.00 1.82
1475 1586 9.424319 CGCATATTCTAAAGTACAGATTGGTAT 57.576 33.333 0.00 0.00 0.00 2.73
1645 1761 1.358152 TCTACCCCCTTCACAACCTG 58.642 55.000 0.00 0.00 0.00 4.00
1716 1839 8.585881 TCATGGCCTATTCTAAAGTATACAGTC 58.414 37.037 3.32 0.00 0.00 3.51
1768 1892 2.420547 GGAACATGCATGCTAGGACTGA 60.421 50.000 26.53 0.00 0.00 3.41
1769 1893 1.945394 GGAACATGCATGCTAGGACTG 59.055 52.381 26.53 8.96 0.00 3.51
1788 1912 3.349488 TGTTACAGAGTGCGATATCGG 57.651 47.619 25.51 10.80 40.23 4.18
1789 1913 4.147133 CACATGTTACAGAGTGCGATATCG 59.853 45.833 20.79 20.79 43.27 2.92
1792 1956 3.186909 GCACATGTTACAGAGTGCGATA 58.813 45.455 22.89 0.00 46.35 2.92
1799 1963 8.206325 AGATAGAAAATGCACATGTTACAGAG 57.794 34.615 0.00 0.00 0.00 3.35
1848 2012 7.840931 TCTTCAACTATAGAATCAGACTGCAA 58.159 34.615 6.78 0.00 0.00 4.08
1943 2117 5.242795 ACCCAGGCCACTACAATATAATC 57.757 43.478 5.01 0.00 0.00 1.75
1979 2153 1.678101 CAAGCCTAAGCAATACCAGCC 59.322 52.381 0.00 0.00 43.56 4.85
1984 2158 3.879295 TCTGATGCAAGCCTAAGCAATAC 59.121 43.478 0.00 0.00 44.88 1.89
2131 2798 9.703892 CTATTTGTCCAATCCTCACTTATAGAG 57.296 37.037 0.00 0.00 0.00 2.43
2135 2802 8.960591 CAAACTATTTGTCCAATCCTCACTTAT 58.039 33.333 0.00 0.00 35.94 1.73
2203 2892 4.895297 ACCTGAGACAACATTTGGTTTGAT 59.105 37.500 0.00 0.00 37.72 2.57
2237 2926 1.956477 ACCAAGTGGATTCACAAGCAC 59.044 47.619 6.96 0.00 45.91 4.40
2240 2929 9.265901 CTATAAGATACCAAGTGGATTCACAAG 57.734 37.037 6.96 0.00 45.91 3.16
2339 3057 7.551262 ACCGACATGTAAATATAAGAACAGCAA 59.449 33.333 0.00 0.00 0.00 3.91
2432 3150 7.735777 TGTATCCAACCCAGGCTACTATAATAA 59.264 37.037 0.00 0.00 32.75 1.40
2441 3159 4.041464 TGTATTGTATCCAACCCAGGCTA 58.959 43.478 0.00 0.00 32.26 3.93
2462 3180 8.281212 AGCCTAAACAATATTAGTTCCTGTTG 57.719 34.615 0.00 0.00 32.16 3.33
2473 3191 5.361857 AGCTGATGCAAGCCTAAACAATATT 59.638 36.000 6.77 0.00 44.68 1.28
2480 3198 4.906065 CATAAGCTGATGCAAGCCTAAA 57.094 40.909 6.77 0.00 44.68 1.85
2513 3232 3.221771 TGTCATCCAAACTCCAACCAAG 58.778 45.455 0.00 0.00 0.00 3.61
2518 3237 5.246981 AGAATCTGTCATCCAAACTCCAA 57.753 39.130 0.00 0.00 0.00 3.53
2519 3238 4.916041 AGAATCTGTCATCCAAACTCCA 57.084 40.909 0.00 0.00 0.00 3.86
2529 3248 5.494724 TGCTTTCAGCTAAGAATCTGTCAT 58.505 37.500 0.19 0.00 42.97 3.06
2551 3270 4.633565 GCAGATCTTTCCCTAGACAACTTG 59.366 45.833 0.00 0.00 0.00 3.16
2555 3275 5.013079 TCAAAGCAGATCTTTCCCTAGACAA 59.987 40.000 0.00 0.00 42.82 3.18
2563 3283 5.981915 GCCATTAATCAAAGCAGATCTTTCC 59.018 40.000 0.00 0.00 42.82 3.13
2566 3286 6.513180 CATGCCATTAATCAAAGCAGATCTT 58.487 36.000 0.00 0.00 36.80 2.40
2627 3347 5.505181 AACTATGTGTCCAATCCTCACTT 57.495 39.130 0.00 0.00 33.82 3.16
2628 3348 5.505181 AAACTATGTGTCCAATCCTCACT 57.495 39.130 0.00 0.00 33.82 3.41
2668 3388 3.001414 CTGGTGCATCAGAACTTCAGAG 58.999 50.000 23.04 0.00 36.93 3.35
2669 3389 2.289882 CCTGGTGCATCAGAACTTCAGA 60.290 50.000 28.75 0.00 36.93 3.27
2670 3390 2.082231 CCTGGTGCATCAGAACTTCAG 58.918 52.381 28.75 5.62 36.93 3.02
2671 3391 1.421268 ACCTGGTGCATCAGAACTTCA 59.579 47.619 28.75 0.00 36.93 3.02
2672 3392 2.191128 ACCTGGTGCATCAGAACTTC 57.809 50.000 28.75 0.00 36.93 3.01
2673 3393 3.560025 CCTTACCTGGTGCATCAGAACTT 60.560 47.826 28.75 11.52 36.93 2.66
2674 3394 2.026822 CCTTACCTGGTGCATCAGAACT 60.027 50.000 28.75 12.23 36.93 3.01
2675 3395 2.359900 CCTTACCTGGTGCATCAGAAC 58.640 52.381 28.75 0.00 36.93 3.01
2688 3408 2.241430 GCCTTTGACATACCCCTTACCT 59.759 50.000 0.00 0.00 0.00 3.08
2689 3409 2.651455 GCCTTTGACATACCCCTTACC 58.349 52.381 0.00 0.00 0.00 2.85
2690 3410 2.651455 GGCCTTTGACATACCCCTTAC 58.349 52.381 0.00 0.00 0.00 2.34
2731 3451 8.773404 ATAGTTAATTGCAACGTTTAGAGACT 57.227 30.769 0.00 0.73 33.50 3.24
2751 3471 9.686683 AGAAACCATCAAGTAAGCAATATAGTT 57.313 29.630 0.00 0.00 0.00 2.24
2758 3478 8.405531 GCATAATAGAAACCATCAAGTAAGCAA 58.594 33.333 0.00 0.00 0.00 3.91
2759 3479 7.555914 TGCATAATAGAAACCATCAAGTAAGCA 59.444 33.333 0.00 0.00 0.00 3.91
2760 3480 7.930217 TGCATAATAGAAACCATCAAGTAAGC 58.070 34.615 0.00 0.00 0.00 3.09
2761 3481 9.722056 GTTGCATAATAGAAACCATCAAGTAAG 57.278 33.333 0.00 0.00 0.00 2.34
2762 3482 9.237187 TGTTGCATAATAGAAACCATCAAGTAA 57.763 29.630 0.00 0.00 0.00 2.24
2763 3483 8.800370 TGTTGCATAATAGAAACCATCAAGTA 57.200 30.769 0.00 0.00 0.00 2.24
2764 3484 7.701539 TGTTGCATAATAGAAACCATCAAGT 57.298 32.000 0.00 0.00 0.00 3.16
2765 3485 9.590451 AATTGTTGCATAATAGAAACCATCAAG 57.410 29.630 0.00 0.00 0.00 3.02
2766 3486 9.585099 GAATTGTTGCATAATAGAAACCATCAA 57.415 29.630 0.00 0.00 0.00 2.57
2767 3487 8.747471 TGAATTGTTGCATAATAGAAACCATCA 58.253 29.630 0.00 0.00 0.00 3.07
2768 3488 9.241317 CTGAATTGTTGCATAATAGAAACCATC 57.759 33.333 0.00 0.00 0.00 3.51
2769 3489 8.752187 ACTGAATTGTTGCATAATAGAAACCAT 58.248 29.630 0.00 0.00 0.00 3.55
2770 3490 8.028354 CACTGAATTGTTGCATAATAGAAACCA 58.972 33.333 0.00 0.00 0.00 3.67
2771 3491 8.028938 ACACTGAATTGTTGCATAATAGAAACC 58.971 33.333 0.00 0.00 0.00 3.27
2772 3492 8.853345 CACACTGAATTGTTGCATAATAGAAAC 58.147 33.333 0.00 0.00 0.00 2.78
2773 3493 7.541783 GCACACTGAATTGTTGCATAATAGAAA 59.458 33.333 0.00 0.00 0.00 2.52
2774 3494 7.028962 GCACACTGAATTGTTGCATAATAGAA 58.971 34.615 0.00 0.00 0.00 2.10
2775 3495 6.375174 AGCACACTGAATTGTTGCATAATAGA 59.625 34.615 0.00 0.00 0.00 1.98
2776 3496 6.558009 AGCACACTGAATTGTTGCATAATAG 58.442 36.000 0.00 0.00 0.00 1.73
2777 3497 6.513806 AGCACACTGAATTGTTGCATAATA 57.486 33.333 0.00 0.00 0.00 0.98
2778 3498 5.395682 AGCACACTGAATTGTTGCATAAT 57.604 34.783 0.00 0.00 0.00 1.28
2779 3499 4.852134 AGCACACTGAATTGTTGCATAA 57.148 36.364 0.00 0.00 0.00 1.90
2793 3513 0.683973 AGTAGCAAGAGCAGCACACT 59.316 50.000 0.00 0.00 45.49 3.55
2794 3514 1.517242 AAGTAGCAAGAGCAGCACAC 58.483 50.000 0.00 0.00 45.49 3.82
2795 3515 1.875514 CAAAGTAGCAAGAGCAGCACA 59.124 47.619 0.00 0.00 45.49 4.57
2796 3516 2.146342 TCAAAGTAGCAAGAGCAGCAC 58.854 47.619 0.00 0.00 45.49 4.40
2797 3517 2.549064 TCAAAGTAGCAAGAGCAGCA 57.451 45.000 0.00 0.00 45.49 4.41
2798 3518 3.190118 ACATTCAAAGTAGCAAGAGCAGC 59.810 43.478 0.00 0.00 45.49 5.25
2799 3519 4.214971 ACACATTCAAAGTAGCAAGAGCAG 59.785 41.667 0.00 0.00 45.49 4.24
2800 3520 4.136796 ACACATTCAAAGTAGCAAGAGCA 58.863 39.130 0.00 0.00 45.49 4.26
2801 3521 4.756084 ACACATTCAAAGTAGCAAGAGC 57.244 40.909 0.00 0.00 42.56 4.09
2802 3522 6.798959 GCTTAACACATTCAAAGTAGCAAGAG 59.201 38.462 0.00 0.00 0.00 2.85
2803 3523 6.565811 CGCTTAACACATTCAAAGTAGCAAGA 60.566 38.462 0.00 0.00 0.00 3.02
2804 3524 5.565259 CGCTTAACACATTCAAAGTAGCAAG 59.435 40.000 0.00 0.00 0.00 4.01
2805 3525 5.008217 ACGCTTAACACATTCAAAGTAGCAA 59.992 36.000 0.00 0.00 0.00 3.91
2806 3526 4.513692 ACGCTTAACACATTCAAAGTAGCA 59.486 37.500 0.00 0.00 0.00 3.49
2807 3527 5.030874 ACGCTTAACACATTCAAAGTAGC 57.969 39.130 0.00 0.00 0.00 3.58
2808 3528 6.655062 TCAACGCTTAACACATTCAAAGTAG 58.345 36.000 0.00 0.00 0.00 2.57
2809 3529 6.480651 TCTCAACGCTTAACACATTCAAAGTA 59.519 34.615 0.00 0.00 0.00 2.24
2810 3530 5.295787 TCTCAACGCTTAACACATTCAAAGT 59.704 36.000 0.00 0.00 0.00 2.66
2811 3531 5.747565 TCTCAACGCTTAACACATTCAAAG 58.252 37.500 0.00 0.00 0.00 2.77
2812 3532 5.743026 TCTCAACGCTTAACACATTCAAA 57.257 34.783 0.00 0.00 0.00 2.69
2813 3533 5.743026 TTCTCAACGCTTAACACATTCAA 57.257 34.783 0.00 0.00 0.00 2.69
2814 3534 5.065346 TGTTTCTCAACGCTTAACACATTCA 59.935 36.000 0.00 0.00 35.40 2.57
2815 3535 5.507077 TGTTTCTCAACGCTTAACACATTC 58.493 37.500 0.00 0.00 35.40 2.67
2816 3536 5.493133 TGTTTCTCAACGCTTAACACATT 57.507 34.783 0.00 0.00 35.40 2.71
2817 3537 5.238432 TCATGTTTCTCAACGCTTAACACAT 59.762 36.000 0.00 0.00 35.40 3.21
2818 3538 4.572795 TCATGTTTCTCAACGCTTAACACA 59.427 37.500 0.00 0.00 35.40 3.72
2819 3539 5.090652 TCATGTTTCTCAACGCTTAACAC 57.909 39.130 0.00 0.00 35.40 3.32
2820 3540 5.700832 AGATCATGTTTCTCAACGCTTAACA 59.299 36.000 0.00 0.00 35.40 2.41
2821 3541 6.017933 CAGATCATGTTTCTCAACGCTTAAC 58.982 40.000 0.00 0.00 35.40 2.01
2822 3542 5.931724 TCAGATCATGTTTCTCAACGCTTAA 59.068 36.000 0.00 0.00 35.40 1.85
2823 3543 5.478407 TCAGATCATGTTTCTCAACGCTTA 58.522 37.500 0.00 0.00 35.40 3.09
2824 3544 4.318332 TCAGATCATGTTTCTCAACGCTT 58.682 39.130 0.00 0.00 35.40 4.68
2825 3545 3.930336 TCAGATCATGTTTCTCAACGCT 58.070 40.909 0.00 0.00 35.40 5.07
2826 3546 3.681897 ACTCAGATCATGTTTCTCAACGC 59.318 43.478 0.00 0.00 35.40 4.84
2827 3547 4.092529 CCACTCAGATCATGTTTCTCAACG 59.907 45.833 0.00 0.00 35.40 4.10
2828 3548 5.240891 TCCACTCAGATCATGTTTCTCAAC 58.759 41.667 0.00 0.00 0.00 3.18
2829 3549 5.488262 TCCACTCAGATCATGTTTCTCAA 57.512 39.130 0.00 0.00 0.00 3.02
2830 3550 5.246883 TCTTCCACTCAGATCATGTTTCTCA 59.753 40.000 0.00 0.00 0.00 3.27
2831 3551 5.728471 TCTTCCACTCAGATCATGTTTCTC 58.272 41.667 0.00 0.00 0.00 2.87
2832 3552 5.752036 TCTTCCACTCAGATCATGTTTCT 57.248 39.130 0.00 0.00 0.00 2.52
2833 3553 5.936956 ACTTCTTCCACTCAGATCATGTTTC 59.063 40.000 0.00 0.00 0.00 2.78
2834 3554 5.874093 ACTTCTTCCACTCAGATCATGTTT 58.126 37.500 0.00 0.00 0.00 2.83
2835 3555 5.495926 ACTTCTTCCACTCAGATCATGTT 57.504 39.130 0.00 0.00 0.00 2.71
2836 3556 5.954752 TCTACTTCTTCCACTCAGATCATGT 59.045 40.000 0.00 0.00 0.00 3.21
2837 3557 6.462552 TCTACTTCTTCCACTCAGATCATG 57.537 41.667 0.00 0.00 0.00 3.07
2838 3558 6.098124 CCTTCTACTTCTTCCACTCAGATCAT 59.902 42.308 0.00 0.00 0.00 2.45
2839 3559 5.420421 CCTTCTACTTCTTCCACTCAGATCA 59.580 44.000 0.00 0.00 0.00 2.92
2840 3560 5.681179 GCCTTCTACTTCTTCCACTCAGATC 60.681 48.000 0.00 0.00 0.00 2.75
2841 3561 4.161377 GCCTTCTACTTCTTCCACTCAGAT 59.839 45.833 0.00 0.00 0.00 2.90
2842 3562 3.511934 GCCTTCTACTTCTTCCACTCAGA 59.488 47.826 0.00 0.00 0.00 3.27
2843 3563 3.513515 AGCCTTCTACTTCTTCCACTCAG 59.486 47.826 0.00 0.00 0.00 3.35
2844 3564 3.511477 AGCCTTCTACTTCTTCCACTCA 58.489 45.455 0.00 0.00 0.00 3.41
2845 3565 5.662674 TTAGCCTTCTACTTCTTCCACTC 57.337 43.478 0.00 0.00 0.00 3.51
2846 3566 6.043358 ACTTTTAGCCTTCTACTTCTTCCACT 59.957 38.462 0.00 0.00 0.00 4.00
2847 3567 6.147985 CACTTTTAGCCTTCTACTTCTTCCAC 59.852 42.308 0.00 0.00 0.00 4.02
2848 3568 6.231211 CACTTTTAGCCTTCTACTTCTTCCA 58.769 40.000 0.00 0.00 0.00 3.53
2849 3569 5.644206 CCACTTTTAGCCTTCTACTTCTTCC 59.356 44.000 0.00 0.00 0.00 3.46
2850 3570 6.231951 ACCACTTTTAGCCTTCTACTTCTTC 58.768 40.000 0.00 0.00 0.00 2.87
2851 3571 6.189036 ACCACTTTTAGCCTTCTACTTCTT 57.811 37.500 0.00 0.00 0.00 2.52
2852 3572 5.827326 ACCACTTTTAGCCTTCTACTTCT 57.173 39.130 0.00 0.00 0.00 2.85
2853 3573 6.092396 GCTAACCACTTTTAGCCTTCTACTTC 59.908 42.308 3.89 0.00 45.64 3.01
2854 3574 5.938710 GCTAACCACTTTTAGCCTTCTACTT 59.061 40.000 3.89 0.00 45.64 2.24
2855 3575 5.489249 GCTAACCACTTTTAGCCTTCTACT 58.511 41.667 3.89 0.00 45.64 2.57
2856 3576 5.798015 GCTAACCACTTTTAGCCTTCTAC 57.202 43.478 3.89 0.00 45.64 2.59
2864 3584 8.135529 GCCCTTATTTATGCTAACCACTTTTAG 58.864 37.037 0.00 0.00 32.92 1.85
2865 3585 7.616150 TGCCCTTATTTATGCTAACCACTTTTA 59.384 33.333 0.00 0.00 0.00 1.52
2866 3586 6.439058 TGCCCTTATTTATGCTAACCACTTTT 59.561 34.615 0.00 0.00 0.00 2.27
2867 3587 5.955355 TGCCCTTATTTATGCTAACCACTTT 59.045 36.000 0.00 0.00 0.00 2.66
2868 3588 5.515106 TGCCCTTATTTATGCTAACCACTT 58.485 37.500 0.00 0.00 0.00 3.16
2869 3589 5.124036 TGCCCTTATTTATGCTAACCACT 57.876 39.130 0.00 0.00 0.00 4.00
2870 3590 5.845391 TTGCCCTTATTTATGCTAACCAC 57.155 39.130 0.00 0.00 0.00 4.16
2871 3591 6.208599 GCTATTGCCCTTATTTATGCTAACCA 59.791 38.462 0.00 0.00 0.00 3.67
2872 3592 6.208599 TGCTATTGCCCTTATTTATGCTAACC 59.791 38.462 0.00 0.00 38.71 2.85
2873 3593 7.174946 TCTGCTATTGCCCTTATTTATGCTAAC 59.825 37.037 0.00 0.00 38.71 2.34
2874 3594 7.174946 GTCTGCTATTGCCCTTATTTATGCTAA 59.825 37.037 0.00 0.00 38.71 3.09
2875 3595 6.655003 GTCTGCTATTGCCCTTATTTATGCTA 59.345 38.462 0.00 0.00 38.71 3.49
2876 3596 5.474876 GTCTGCTATTGCCCTTATTTATGCT 59.525 40.000 0.00 0.00 38.71 3.79
2877 3597 5.617751 CGTCTGCTATTGCCCTTATTTATGC 60.618 44.000 0.00 0.00 38.71 3.14
2878 3598 5.470098 ACGTCTGCTATTGCCCTTATTTATG 59.530 40.000 0.00 0.00 38.71 1.90
2879 3599 5.470098 CACGTCTGCTATTGCCCTTATTTAT 59.530 40.000 0.00 0.00 38.71 1.40
2880 3600 4.814234 CACGTCTGCTATTGCCCTTATTTA 59.186 41.667 0.00 0.00 38.71 1.40
2881 3601 3.627577 CACGTCTGCTATTGCCCTTATTT 59.372 43.478 0.00 0.00 38.71 1.40
2882 3602 3.118408 TCACGTCTGCTATTGCCCTTATT 60.118 43.478 0.00 0.00 38.71 1.40
2883 3603 2.434336 TCACGTCTGCTATTGCCCTTAT 59.566 45.455 0.00 0.00 38.71 1.73
2884 3604 1.828595 TCACGTCTGCTATTGCCCTTA 59.171 47.619 0.00 0.00 38.71 2.69
2885 3605 0.613260 TCACGTCTGCTATTGCCCTT 59.387 50.000 0.00 0.00 38.71 3.95
2886 3606 0.108138 GTCACGTCTGCTATTGCCCT 60.108 55.000 0.00 0.00 38.71 5.19
2887 3607 0.108138 AGTCACGTCTGCTATTGCCC 60.108 55.000 0.00 0.00 38.71 5.36
2888 3608 1.726853 AAGTCACGTCTGCTATTGCC 58.273 50.000 0.00 0.00 38.71 4.52
2889 3609 4.174009 TCTAAAGTCACGTCTGCTATTGC 58.826 43.478 0.00 0.00 40.20 3.56
2890 3610 6.972901 TGTATCTAAAGTCACGTCTGCTATTG 59.027 38.462 0.00 0.00 0.00 1.90
2891 3611 6.973474 GTGTATCTAAAGTCACGTCTGCTATT 59.027 38.462 0.00 0.00 0.00 1.73
2892 3612 6.095021 TGTGTATCTAAAGTCACGTCTGCTAT 59.905 38.462 0.00 0.00 34.08 2.97
2893 3613 5.413523 TGTGTATCTAAAGTCACGTCTGCTA 59.586 40.000 0.00 0.00 34.08 3.49
2894 3614 4.217767 TGTGTATCTAAAGTCACGTCTGCT 59.782 41.667 0.00 0.00 34.08 4.24
2895 3615 4.482386 TGTGTATCTAAAGTCACGTCTGC 58.518 43.478 0.00 0.00 34.08 4.26
2896 3616 6.150318 AGTTGTGTATCTAAAGTCACGTCTG 58.850 40.000 0.00 0.00 34.08 3.51
2897 3617 6.328641 AGTTGTGTATCTAAAGTCACGTCT 57.671 37.500 0.00 0.00 34.08 4.18
2898 3618 8.182881 AGATAGTTGTGTATCTAAAGTCACGTC 58.817 37.037 0.00 0.00 37.88 4.34
2899 3619 8.053026 AGATAGTTGTGTATCTAAAGTCACGT 57.947 34.615 0.00 0.00 37.88 4.49
2900 3620 8.912787 AAGATAGTTGTGTATCTAAAGTCACG 57.087 34.615 0.00 0.00 38.57 4.35
2914 3634 6.730175 AGTATGCTCGAGTAAGATAGTTGTG 58.270 40.000 15.13 0.00 0.00 3.33
2915 3635 6.945938 AGTATGCTCGAGTAAGATAGTTGT 57.054 37.500 15.13 0.00 0.00 3.32
2967 3687 5.453567 AATGCACCTTAAAGTCCTGTTTC 57.546 39.130 0.00 0.00 0.00 2.78
2979 3701 9.760077 TTTTCGGTAAAAATAAAATGCACCTTA 57.240 25.926 0.00 0.00 31.88 2.69
3022 3749 8.431222 ACACAAGTAACCAGTACTAAATTACCA 58.569 33.333 14.77 0.00 42.55 3.25
3029 3756 9.354673 ACTAACTACACAAGTAACCAGTACTAA 57.645 33.333 0.00 0.00 42.55 2.24
3031 3758 7.503566 TGACTAACTACACAAGTAACCAGTACT 59.496 37.037 0.00 0.00 45.48 2.73
3156 3884 7.642071 TTTGCTCTATCTTTTTGCATGAAAC 57.358 32.000 0.00 0.00 33.50 2.78
3158 3886 8.836268 AAATTTGCTCTATCTTTTTGCATGAA 57.164 26.923 0.00 0.00 33.50 2.57
3185 3913 7.602644 TCAGTGAATCATGAAAACCAGTAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
3186 3914 7.676004 TCAGTGAATCATGAAAACCAGTAGTA 58.324 34.615 0.00 0.00 0.00 1.82
3187 3915 6.533730 TCAGTGAATCATGAAAACCAGTAGT 58.466 36.000 0.00 0.00 0.00 2.73
3188 3916 7.439157 TTCAGTGAATCATGAAAACCAGTAG 57.561 36.000 0.08 0.00 32.66 2.57
3191 3919 7.117236 CCAAATTCAGTGAATCATGAAAACCAG 59.883 37.037 23.33 8.94 38.80 4.00
3194 3922 8.592105 TTCCAAATTCAGTGAATCATGAAAAC 57.408 30.769 23.33 0.00 38.80 2.43
3227 3955 3.694566 GCCAGAATCTGATTTAAACGGGT 59.305 43.478 12.53 0.00 32.44 5.28
3229 3957 3.788797 GCGCCAGAATCTGATTTAAACGG 60.789 47.826 12.53 2.91 32.44 4.44
3230 3958 3.181511 TGCGCCAGAATCTGATTTAAACG 60.182 43.478 12.53 8.09 32.44 3.60
3238 3966 1.300971 GCAACTGCGCCAGAATCTGA 61.301 55.000 12.53 0.00 35.18 3.27
3240 3968 0.890542 TTGCAACTGCGCCAGAATCT 60.891 50.000 4.18 0.00 45.83 2.40
3266 3994 9.920946 ACCAGAAAATACACTTGGTATCATAAT 57.079 29.630 0.00 0.00 41.87 1.28
3274 4002 9.793259 CCATATATACCAGAAAATACACTTGGT 57.207 33.333 0.00 0.00 0.00 3.67
3285 4013 9.213777 ACTTCAGACTTCCATATATACCAGAAA 57.786 33.333 0.00 0.00 0.00 2.52
3286 4014 8.783660 ACTTCAGACTTCCATATATACCAGAA 57.216 34.615 0.00 0.00 0.00 3.02
3287 4015 8.004801 TGACTTCAGACTTCCATATATACCAGA 58.995 37.037 0.00 0.00 0.00 3.86
3288 4016 8.183104 TGACTTCAGACTTCCATATATACCAG 57.817 38.462 0.00 0.00 0.00 4.00
3289 4017 7.233553 CCTGACTTCAGACTTCCATATATACCA 59.766 40.741 7.87 0.00 46.59 3.25
3290 4018 7.310113 CCCTGACTTCAGACTTCCATATATACC 60.310 44.444 7.87 0.00 46.59 2.73
3291 4019 7.233757 ACCCTGACTTCAGACTTCCATATATAC 59.766 40.741 7.87 0.00 46.59 1.47
3292 4020 7.233553 CACCCTGACTTCAGACTTCCATATATA 59.766 40.741 7.87 0.00 46.59 0.86
3293 4021 6.042552 CACCCTGACTTCAGACTTCCATATAT 59.957 42.308 7.87 0.00 46.59 0.86
3294 4022 5.363868 CACCCTGACTTCAGACTTCCATATA 59.636 44.000 7.87 0.00 46.59 0.86
3295 4023 4.163078 CACCCTGACTTCAGACTTCCATAT 59.837 45.833 7.87 0.00 46.59 1.78
3296 4024 3.515502 CACCCTGACTTCAGACTTCCATA 59.484 47.826 7.87 0.00 46.59 2.74
3297 4025 2.304180 CACCCTGACTTCAGACTTCCAT 59.696 50.000 7.87 0.00 46.59 3.41
3298 4026 1.694150 CACCCTGACTTCAGACTTCCA 59.306 52.381 7.87 0.00 46.59 3.53
3299 4027 1.694696 ACACCCTGACTTCAGACTTCC 59.305 52.381 7.87 0.00 46.59 3.46
3300 4028 3.306156 GGTACACCCTGACTTCAGACTTC 60.306 52.174 7.87 0.00 46.59 3.01
3301 4029 2.633481 GGTACACCCTGACTTCAGACTT 59.367 50.000 7.87 0.00 46.59 3.01
3302 4030 2.249139 GGTACACCCTGACTTCAGACT 58.751 52.381 7.87 0.00 46.59 3.24
3303 4031 2.745515 GGTACACCCTGACTTCAGAC 57.254 55.000 7.87 0.00 46.59 3.51
3315 4043 2.167662 CCAAGTCCAAATGGGTACACC 58.832 52.381 0.00 0.00 38.11 4.16
3316 4044 2.871453 ACCAAGTCCAAATGGGTACAC 58.129 47.619 0.00 0.00 41.17 2.90
3317 4045 4.938575 ATACCAAGTCCAAATGGGTACA 57.061 40.909 0.00 0.00 41.17 2.90
3318 4046 7.610305 CCATATATACCAAGTCCAAATGGGTAC 59.390 40.741 0.00 0.00 41.17 3.34
3319 4047 7.296150 ACCATATATACCAAGTCCAAATGGGTA 59.704 37.037 0.00 0.00 41.17 3.69
3320 4048 6.104094 ACCATATATACCAAGTCCAAATGGGT 59.896 38.462 0.00 0.00 41.17 4.51
3321 4049 6.552008 ACCATATATACCAAGTCCAAATGGG 58.448 40.000 0.00 0.00 41.17 4.00
3357 4086 4.397417 CAGATTCAACAAATCCTCCACCTC 59.603 45.833 0.00 0.00 44.20 3.85
3400 4131 4.017499 AGGCCAACAATCCCACTTTATAGT 60.017 41.667 5.01 0.00 34.00 2.12
3409 4140 1.367346 TCTACAGGCCAACAATCCCA 58.633 50.000 5.01 0.00 0.00 4.37
3434 4165 2.002586 CCAACGTGTGTCCATGAGATC 58.997 52.381 0.00 0.00 0.00 2.75
3440 4171 0.889186 GAAGGCCAACGTGTGTCCAT 60.889 55.000 5.01 0.00 0.00 3.41
3443 4174 1.873698 TTAGAAGGCCAACGTGTGTC 58.126 50.000 5.01 0.00 0.00 3.67
3471 4202 6.615264 ATTCATTAACTGATAGTGCTGCTG 57.385 37.500 0.00 0.00 32.72 4.41
3481 4212 9.420118 TGGTGCCTAATTAATTCATTAACTGAT 57.580 29.630 3.39 0.00 35.31 2.90
3498 4229 5.534654 GGCATGATTACTTATTGGTGCCTAA 59.465 40.000 0.00 0.00 45.50 2.69
3505 4236 6.000219 ACTAGCTGGCATGATTACTTATTGG 59.000 40.000 0.00 0.00 0.00 3.16
3522 4253 5.409520 TGTGCATTTTACTTGAGACTAGCTG 59.590 40.000 0.00 0.00 0.00 4.24
3530 4261 6.215121 TGAAATGGTGTGCATTTTACTTGAG 58.785 36.000 0.00 0.00 32.98 3.02
3537 4268 4.880759 TCGAATGAAATGGTGTGCATTTT 58.119 34.783 0.00 0.00 32.98 1.82
3558 4289 7.064016 CAGACTGGACTAACAGCTTAGAATTTC 59.936 40.741 0.00 0.00 42.21 2.17
3578 4309 6.539649 TCAAGAACGAAAATTACCAGACTG 57.460 37.500 0.00 0.00 0.00 3.51
3579 4310 6.540914 TGTTCAAGAACGAAAATTACCAGACT 59.459 34.615 8.28 0.00 43.94 3.24
3654 4387 8.763049 ACTGCTCAAAATAAAATCTTTTAGGC 57.237 30.769 2.03 0.00 36.22 3.93
3773 4506 2.743636 TGAGCCGTTAGAAGGTTGAG 57.256 50.000 0.00 0.00 0.00 3.02
3787 4520 1.364626 CCTGCAACGAGTGATGAGCC 61.365 60.000 0.00 0.00 0.00 4.70
3795 4528 1.618837 AGTGTGTATCCTGCAACGAGT 59.381 47.619 0.00 0.00 0.00 4.18
3873 4606 2.642311 TGAGGTGTTGGCTGATTTCCTA 59.358 45.455 0.00 0.00 0.00 2.94
3958 4694 0.901124 AGCTTCTTCATCTCGCTGGT 59.099 50.000 0.00 0.00 0.00 4.00
4056 4792 1.890979 GACATGGGCCTCTGCATCG 60.891 63.158 4.53 0.00 40.13 3.84
4376 5149 8.035394 CACATGGTCTAATCAGTACTACAAAGT 58.965 37.037 0.00 0.00 39.91 2.66
4385 5158 7.148255 GCATTTCAACACATGGTCTAATCAGTA 60.148 37.037 0.00 0.00 0.00 2.74
4426 5199 7.202016 ACTGTTCAAAATCTTTGCGAGAATA 57.798 32.000 0.00 0.00 38.06 1.75
4451 6265 7.228906 TGGAAACACGGTGAAACATTATAGAAA 59.771 33.333 16.29 0.00 33.91 2.52
4501 6315 7.334421 TGCCTTAACAAAAACAAAATGTGCTTA 59.666 29.630 0.00 0.00 0.00 3.09
4505 6319 7.918643 AGATGCCTTAACAAAAACAAAATGTG 58.081 30.769 0.00 0.00 0.00 3.21
4582 6403 9.398538 TGACCAACAAAAAGTAAACAGTACTAT 57.601 29.630 0.00 0.00 0.00 2.12
4596 6417 9.892130 ACTGGTAATAAAAATGACCAACAAAAA 57.108 25.926 0.00 0.00 41.34 1.94
4648 6470 7.645058 TGATTTCCAAATTGTAAGGAGATCC 57.355 36.000 13.04 0.00 40.47 3.36
4708 6548 6.209391 CCAACCTAAGTGAATCATGAAAACCT 59.791 38.462 0.00 0.00 0.00 3.50
4732 6572 2.643551 TGCAAGCAAGCCTTAGATACC 58.356 47.619 0.00 0.00 31.00 2.73
4737 6577 1.881973 TCAGTTGCAAGCAAGCCTTAG 59.118 47.619 7.88 0.00 36.52 2.18
4742 6582 1.000060 TGGATTCAGTTGCAAGCAAGC 60.000 47.619 7.88 3.77 36.52 4.01
4744 6584 3.655486 CAATGGATTCAGTTGCAAGCAA 58.345 40.909 0.00 2.89 0.00 3.91
4788 6666 7.786464 AGGCTTTCCCATGAAATATTACTTGAT 59.214 33.333 0.00 0.00 39.65 2.57
4798 6676 3.766051 GACTTCAGGCTTTCCCATGAAAT 59.234 43.478 0.00 0.00 39.65 2.17
4838 6716 6.875076 ACAGAGTACAGACCAATATACCAAC 58.125 40.000 0.00 0.00 0.00 3.77
4978 6857 4.891992 TCAGAGTATAGCCTTAATGCCC 57.108 45.455 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.