Multiple sequence alignment - TraesCS5D01G537200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G537200 chr5D 100.000 5110 0 0 1 5110 549875872 549880981 0.000000e+00 9437.0
1 TraesCS5D01G537200 chr5D 79.792 1252 194 35 991 2210 549863557 549864781 0.000000e+00 856.0
2 TraesCS5D01G537200 chr5D 80.030 656 87 24 991 1634 549869953 549870576 3.630000e-121 446.0
3 TraesCS5D01G537200 chr4A 90.735 3076 154 38 2065 5110 617877617 617874643 0.000000e+00 3980.0
4 TraesCS5D01G537200 chr4A 92.593 1080 59 11 929 1999 617904415 617903348 0.000000e+00 1531.0
5 TraesCS5D01G537200 chr4A 79.066 1242 202 34 995 2205 617938154 617936940 0.000000e+00 800.0
6 TraesCS5D01G537200 chr4A 77.453 1233 207 46 952 2157 617927570 617926382 0.000000e+00 671.0
7 TraesCS5D01G537200 chr4A 79.459 998 147 39 991 1959 617912183 617911215 0.000000e+00 654.0
8 TraesCS5D01G537200 chr4A 81.557 244 34 4 1967 2210 617911180 617910948 1.880000e-44 191.0
9 TraesCS5D01G537200 chr4A 96.364 55 1 1 587 641 617904726 617904673 7.050000e-14 89.8
10 TraesCS5D01G537200 chr4A 97.917 48 1 0 2020 2067 617897963 617897916 3.280000e-12 84.2
11 TraesCS5D01G537200 chr5B 92.361 2029 109 10 1828 3844 701530752 701532746 0.000000e+00 2846.0
12 TraesCS5D01G537200 chr5B 77.972 2002 314 75 2290 4266 701518578 701520477 0.000000e+00 1136.0
13 TraesCS5D01G537200 chr5B 85.121 1156 77 23 3838 4989 701538667 701539731 0.000000e+00 1094.0
14 TraesCS5D01G537200 chr5B 79.124 1164 181 42 1013 2165 701503801 701504913 0.000000e+00 747.0
15 TraesCS5D01G537200 chr5B 76.138 1538 302 46 2569 4095 701505374 701506857 0.000000e+00 747.0
16 TraesCS5D01G537200 chr5B 82.057 914 129 17 1293 2205 701517584 701518463 0.000000e+00 747.0
17 TraesCS5D01G537200 chr5B 78.821 1204 177 56 952 2124 701512804 701513960 0.000000e+00 739.0
18 TraesCS5D01G537200 chr5B 83.838 297 45 2 2567 2863 701514780 701515073 3.900000e-71 279.0
19 TraesCS5D01G537200 chr5B 90.816 196 9 5 461 652 701530434 701530624 2.360000e-63 254.0
20 TraesCS5D01G537200 chr5B 90.278 72 6 1 4441 4512 701529100 701529170 5.450000e-15 93.5
21 TraesCS5D01G537200 chr1B 76.697 884 170 27 3219 4093 58557425 58558281 4.660000e-125 459.0
22 TraesCS5D01G537200 chr1B 82.192 219 36 1 2649 2864 385161043 385161261 8.740000e-43 185.0
23 TraesCS5D01G537200 chr1A 76.584 884 171 27 3219 4093 38714197 38715053 2.170000e-123 453.0
24 TraesCS5D01G537200 chr1A 79.288 309 52 8 2646 2948 355323349 355323651 6.710000e-49 206.0
25 TraesCS5D01G537200 chrUn 75.120 832 174 25 3268 4093 79679515 79678711 4.860000e-95 359.0
26 TraesCS5D01G537200 chrUn 72.854 862 194 31 3238 4091 346081531 346080702 5.080000e-65 259.0
27 TraesCS5D01G537200 chr2B 73.666 881 197 27 3220 4093 118631995 118632847 4.970000e-80 309.0
28 TraesCS5D01G537200 chr7A 74.793 726 148 24 3374 4092 46255008 46255705 1.390000e-75 294.0
29 TraesCS5D01G537200 chr7A 81.707 82 13 2 2085 2165 4783890 4783970 3.300000e-07 67.6
30 TraesCS5D01G537200 chr2D 73.128 908 195 39 3200 4093 2048102 2048974 3.900000e-71 279.0
31 TraesCS5D01G537200 chr2A 73.016 882 201 30 3220 4093 77539878 77540730 5.040000e-70 276.0
32 TraesCS5D01G537200 chr6D 74.136 723 152 26 3376 4091 468168444 468167750 3.030000e-67 267.0
33 TraesCS5D01G537200 chr6B 72.897 856 196 27 3244 4091 714340537 714339710 3.920000e-66 263.0
34 TraesCS5D01G537200 chr1D 79.545 308 56 5 2646 2948 283562788 283563093 4.010000e-51 213.0
35 TraesCS5D01G537200 chr6A 80.085 236 47 0 1718 1953 17935841 17935606 5.260000e-40 176.0
36 TraesCS5D01G537200 chr6A 85.965 57 8 0 4975 5031 571907796 571907852 1.540000e-05 62.1
37 TraesCS5D01G537200 chr3A 86.957 69 7 2 4967 5035 716800472 716800538 5.490000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G537200 chr5D 549875872 549880981 5109 False 9437.00 9437 100.000000 1 5110 1 chr5D.!!$F3 5109
1 TraesCS5D01G537200 chr5D 549863557 549864781 1224 False 856.00 856 79.792000 991 2210 1 chr5D.!!$F1 1219
2 TraesCS5D01G537200 chr5D 549869953 549870576 623 False 446.00 446 80.030000 991 1634 1 chr5D.!!$F2 643
3 TraesCS5D01G537200 chr4A 617874643 617877617 2974 True 3980.00 3980 90.735000 2065 5110 1 chr4A.!!$R1 3045
4 TraesCS5D01G537200 chr4A 617903348 617904726 1378 True 810.40 1531 94.478500 587 1999 2 chr4A.!!$R5 1412
5 TraesCS5D01G537200 chr4A 617936940 617938154 1214 True 800.00 800 79.066000 995 2205 1 chr4A.!!$R4 1210
6 TraesCS5D01G537200 chr4A 617926382 617927570 1188 True 671.00 671 77.453000 952 2157 1 chr4A.!!$R3 1205
7 TraesCS5D01G537200 chr4A 617910948 617912183 1235 True 422.50 654 80.508000 991 2210 2 chr4A.!!$R6 1219
8 TraesCS5D01G537200 chr5B 701538667 701539731 1064 False 1094.00 1094 85.121000 3838 4989 1 chr5B.!!$F1 1151
9 TraesCS5D01G537200 chr5B 701529100 701532746 3646 False 1064.50 2846 91.151667 461 4512 3 chr5B.!!$F4 4051
10 TraesCS5D01G537200 chr5B 701503801 701506857 3056 False 747.00 747 77.631000 1013 4095 2 chr5B.!!$F2 3082
11 TraesCS5D01G537200 chr5B 701512804 701520477 7673 False 725.25 1136 80.672000 952 4266 4 chr5B.!!$F3 3314
12 TraesCS5D01G537200 chr1B 58557425 58558281 856 False 459.00 459 76.697000 3219 4093 1 chr1B.!!$F1 874
13 TraesCS5D01G537200 chr1A 38714197 38715053 856 False 453.00 453 76.584000 3219 4093 1 chr1A.!!$F1 874
14 TraesCS5D01G537200 chrUn 79678711 79679515 804 True 359.00 359 75.120000 3268 4093 1 chrUn.!!$R1 825
15 TraesCS5D01G537200 chrUn 346080702 346081531 829 True 259.00 259 72.854000 3238 4091 1 chrUn.!!$R2 853
16 TraesCS5D01G537200 chr2B 118631995 118632847 852 False 309.00 309 73.666000 3220 4093 1 chr2B.!!$F1 873
17 TraesCS5D01G537200 chr7A 46255008 46255705 697 False 294.00 294 74.793000 3374 4092 1 chr7A.!!$F2 718
18 TraesCS5D01G537200 chr2D 2048102 2048974 872 False 279.00 279 73.128000 3200 4093 1 chr2D.!!$F1 893
19 TraesCS5D01G537200 chr2A 77539878 77540730 852 False 276.00 276 73.016000 3220 4093 1 chr2A.!!$F1 873
20 TraesCS5D01G537200 chr6D 468167750 468168444 694 True 267.00 267 74.136000 3376 4091 1 chr6D.!!$R1 715
21 TraesCS5D01G537200 chr6B 714339710 714340537 827 True 263.00 263 72.897000 3244 4091 1 chr6B.!!$R1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 1372 0.033504 CGCCTTACGCCTGTATGGAT 59.966 55.000 10.53 0.00 44.68 3.41 F
1140 2057 0.245539 CTGCTCACCAAATTGGCAGG 59.754 55.000 12.67 2.18 42.67 4.85 F
1208 2148 1.160137 CCAGTCCTGCTTAGTTGTGC 58.840 55.000 0.00 0.00 0.00 4.57 F
1372 2323 1.261619 CTGTCAAGGACGTTTGCTGTC 59.738 52.381 0.00 0.00 34.95 3.51 F
2848 8411 2.185004 ACGGCAAGTGCAGACTATTT 57.815 45.000 10.46 0.00 44.36 1.40 F
3563 9214 2.472861 GGATGTGCGTCTGAATATCGTG 59.527 50.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 7590 1.156736 ATTCAAGTTGGAGCGAACGG 58.843 50.000 2.34 0.00 0.00 4.44 R
2886 8449 1.702957 CTCCCTTGGACAACTTACCCA 59.297 52.381 0.00 0.00 0.00 4.51 R
3036 8605 3.072476 CCCCGTGATGGTAATTGGTCTAT 59.928 47.826 0.00 0.00 35.15 1.98 R
3232 8813 1.901591 TGGCTTGAGCTCCTCTTTTG 58.098 50.000 12.15 0.00 41.70 2.44 R
4031 10018 0.109532 TCATCGTGGGCCTTTGTTGA 59.890 50.000 4.53 2.62 0.00 3.18 R
4498 10501 0.391597 GGGACACACCGAACTTGAGA 59.608 55.000 0.00 0.00 40.11 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.991906 TTAGGGATAATATAACTAGTTGTGTGC 57.008 33.333 18.56 5.37 0.00 4.57
35 36 8.029782 AGGGATAATATAACTAGTTGTGTGCA 57.970 34.615 18.56 2.68 0.00 4.57
36 37 7.931948 AGGGATAATATAACTAGTTGTGTGCAC 59.068 37.037 18.56 10.75 0.00 4.57
37 38 7.095774 GGGATAATATAACTAGTTGTGTGCACG 60.096 40.741 18.56 0.00 0.00 5.34
40 41 1.217882 AACTAGTTGTGTGCACGCTC 58.782 50.000 29.04 21.18 0.00 5.03
41 42 0.600255 ACTAGTTGTGTGCACGCTCC 60.600 55.000 29.04 19.25 0.00 4.70
42 43 1.617755 CTAGTTGTGTGCACGCTCCG 61.618 60.000 29.04 13.10 0.00 4.63
44 45 1.952133 GTTGTGTGCACGCTCCGTA 60.952 57.895 29.04 7.62 38.32 4.02
45 46 1.952133 TTGTGTGCACGCTCCGTAC 60.952 57.895 29.04 12.61 38.32 3.67
46 47 3.467119 GTGTGCACGCTCCGTACG 61.467 66.667 22.93 8.69 38.32 3.67
49 50 4.429212 TGCACGCTCCGTACGCAT 62.429 61.111 10.49 0.00 38.32 4.73
50 51 3.913573 GCACGCTCCGTACGCATG 61.914 66.667 10.49 4.05 38.32 4.06
52 53 4.429212 ACGCTCCGTACGCATGCA 62.429 61.111 19.57 0.00 38.73 3.96
53 54 2.961721 CGCTCCGTACGCATGCAT 60.962 61.111 19.57 4.54 0.00 3.96
54 55 1.660264 CGCTCCGTACGCATGCATA 60.660 57.895 19.57 3.22 0.00 3.14
56 57 0.716108 GCTCCGTACGCATGCATATC 59.284 55.000 19.57 3.88 0.00 1.63
59 60 0.984829 CCGTACGCATGCATATCTCG 59.015 55.000 19.57 6.90 0.00 4.04
60 61 0.363512 CGTACGCATGCATATCTCGC 59.636 55.000 19.57 0.00 0.00 5.03
61 62 1.702886 GTACGCATGCATATCTCGCT 58.297 50.000 19.57 0.00 0.00 4.93
62 63 2.061773 GTACGCATGCATATCTCGCTT 58.938 47.619 19.57 0.00 0.00 4.68
63 64 2.438868 ACGCATGCATATCTCGCTTA 57.561 45.000 19.57 0.00 0.00 3.09
64 65 2.754472 ACGCATGCATATCTCGCTTAA 58.246 42.857 19.57 0.00 0.00 1.85
65 66 2.733552 ACGCATGCATATCTCGCTTAAG 59.266 45.455 19.57 0.00 0.00 1.85
66 67 2.093310 CGCATGCATATCTCGCTTAAGG 59.907 50.000 19.57 0.00 0.00 2.69
67 68 2.159599 GCATGCATATCTCGCTTAAGGC 60.160 50.000 14.21 0.00 37.64 4.35
68 69 3.332919 CATGCATATCTCGCTTAAGGCT 58.667 45.455 0.00 0.00 39.13 4.58
70 71 4.600692 TGCATATCTCGCTTAAGGCTTA 57.399 40.909 2.04 2.04 39.13 3.09
71 72 4.956085 TGCATATCTCGCTTAAGGCTTAA 58.044 39.130 18.11 18.11 39.13 1.85
75 76 2.185387 TCTCGCTTAAGGCTTAACCCT 58.815 47.619 15.49 0.00 40.58 4.34
76 77 2.093658 TCTCGCTTAAGGCTTAACCCTG 60.094 50.000 15.49 7.50 40.58 4.45
77 78 0.733150 CGCTTAAGGCTTAACCCTGC 59.267 55.000 15.49 15.36 40.58 4.85
78 79 1.834188 GCTTAAGGCTTAACCCTGCA 58.166 50.000 15.49 0.00 40.58 4.41
79 80 1.472878 GCTTAAGGCTTAACCCTGCAC 59.527 52.381 15.49 0.00 40.58 4.57
80 81 2.790433 CTTAAGGCTTAACCCTGCACA 58.210 47.619 15.49 0.00 40.58 4.57
81 82 3.356290 CTTAAGGCTTAACCCTGCACAT 58.644 45.455 15.49 0.00 40.58 3.21
82 83 2.309136 AAGGCTTAACCCTGCACATT 57.691 45.000 0.00 0.00 40.58 2.71
83 84 1.549203 AGGCTTAACCCTGCACATTG 58.451 50.000 0.00 0.00 40.58 2.82
84 85 0.532115 GGCTTAACCCTGCACATTGG 59.468 55.000 0.00 0.00 0.00 3.16
85 86 0.108662 GCTTAACCCTGCACATTGGC 60.109 55.000 0.00 0.00 0.00 4.52
86 87 0.171007 CTTAACCCTGCACATTGGCG 59.829 55.000 0.00 0.00 36.28 5.69
87 88 0.538516 TTAACCCTGCACATTGGCGT 60.539 50.000 0.00 0.00 36.28 5.68
88 89 0.958382 TAACCCTGCACATTGGCGTC 60.958 55.000 0.00 0.00 36.28 5.19
89 90 3.443045 CCCTGCACATTGGCGTCC 61.443 66.667 0.00 0.00 36.28 4.79
90 91 2.672651 CCTGCACATTGGCGTCCA 60.673 61.111 0.00 0.00 36.28 4.02
100 101 0.390860 TTGGCGTCCAATGGGTTTTG 59.609 50.000 0.00 0.00 38.75 2.44
101 102 1.374125 GGCGTCCAATGGGTTTTGC 60.374 57.895 0.00 0.00 34.93 3.68
103 104 0.885196 GCGTCCAATGGGTTTTGCTA 59.115 50.000 0.00 0.00 34.93 3.49
104 105 1.135402 GCGTCCAATGGGTTTTGCTAG 60.135 52.381 0.00 0.00 34.93 3.42
105 106 1.472480 CGTCCAATGGGTTTTGCTAGG 59.528 52.381 0.00 0.00 34.93 3.02
106 107 1.204704 GTCCAATGGGTTTTGCTAGGC 59.795 52.381 0.00 0.00 34.93 3.93
107 108 0.536724 CCAATGGGTTTTGCTAGGCC 59.463 55.000 0.00 0.00 0.00 5.19
108 109 1.265236 CAATGGGTTTTGCTAGGCCA 58.735 50.000 5.01 0.00 0.00 5.36
109 110 1.622811 CAATGGGTTTTGCTAGGCCAA 59.377 47.619 5.01 0.00 0.00 4.52
110 111 1.560505 ATGGGTTTTGCTAGGCCAAG 58.439 50.000 5.01 0.00 0.00 3.61
122 123 4.181051 GCCAAGCCACTGTTTCCT 57.819 55.556 0.00 0.00 0.00 3.36
123 124 2.429927 GCCAAGCCACTGTTTCCTT 58.570 52.632 0.00 0.00 0.00 3.36
124 125 0.752658 GCCAAGCCACTGTTTCCTTT 59.247 50.000 0.00 0.00 0.00 3.11
125 126 1.138859 GCCAAGCCACTGTTTCCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
126 127 2.803133 GCCAAGCCACTGTTTCCTTTTC 60.803 50.000 0.00 0.00 0.00 2.29
128 129 3.447742 CAAGCCACTGTTTCCTTTTCAC 58.552 45.455 0.00 0.00 0.00 3.18
129 130 3.018423 AGCCACTGTTTCCTTTTCACT 57.982 42.857 0.00 0.00 0.00 3.41
130 131 2.952310 AGCCACTGTTTCCTTTTCACTC 59.048 45.455 0.00 0.00 0.00 3.51
131 132 2.952310 GCCACTGTTTCCTTTTCACTCT 59.048 45.455 0.00 0.00 0.00 3.24
132 133 3.243201 GCCACTGTTTCCTTTTCACTCTG 60.243 47.826 0.00 0.00 0.00 3.35
133 134 3.243201 CCACTGTTTCCTTTTCACTCTGC 60.243 47.826 0.00 0.00 0.00 4.26
134 135 3.629398 CACTGTTTCCTTTTCACTCTGCT 59.371 43.478 0.00 0.00 0.00 4.24
137 138 4.997565 TGTTTCCTTTTCACTCTGCTTTG 58.002 39.130 0.00 0.00 0.00 2.77
138 139 4.142182 TGTTTCCTTTTCACTCTGCTTTGG 60.142 41.667 0.00 0.00 0.00 3.28
139 140 1.956477 TCCTTTTCACTCTGCTTTGGC 59.044 47.619 0.00 0.00 39.26 4.52
140 141 1.000171 CCTTTTCACTCTGCTTTGGCC 60.000 52.381 0.00 0.00 37.74 5.36
141 142 1.000171 CTTTTCACTCTGCTTTGGCCC 60.000 52.381 0.00 0.00 37.74 5.80
142 143 0.827507 TTTCACTCTGCTTTGGCCCC 60.828 55.000 0.00 0.00 37.74 5.80
143 144 3.058160 CACTCTGCTTTGGCCCCG 61.058 66.667 0.00 0.00 37.74 5.73
144 145 3.249189 ACTCTGCTTTGGCCCCGA 61.249 61.111 0.00 0.00 37.74 5.14
145 146 2.034066 CTCTGCTTTGGCCCCGAA 59.966 61.111 0.00 0.00 37.74 4.30
146 147 1.603455 CTCTGCTTTGGCCCCGAAA 60.603 57.895 0.00 0.00 37.74 3.46
148 149 0.541764 TCTGCTTTGGCCCCGAAATT 60.542 50.000 0.00 0.00 37.74 1.82
149 150 0.108662 CTGCTTTGGCCCCGAAATTC 60.109 55.000 0.00 0.00 37.74 2.17
150 151 1.218047 GCTTTGGCCCCGAAATTCC 59.782 57.895 0.00 0.00 0.00 3.01
151 152 1.897423 CTTTGGCCCCGAAATTCCC 59.103 57.895 0.00 0.00 0.00 3.97
153 154 0.471971 TTTGGCCCCGAAATTCCCAA 60.472 50.000 0.00 0.00 34.02 4.12
154 155 0.471971 TTGGCCCCGAAATTCCCAAA 60.472 50.000 0.00 0.00 32.99 3.28
155 156 0.252467 TGGCCCCGAAATTCCCAAAT 60.252 50.000 0.00 0.00 0.00 2.32
156 157 0.464036 GGCCCCGAAATTCCCAAATC 59.536 55.000 0.00 0.00 0.00 2.17
157 158 1.485124 GCCCCGAAATTCCCAAATCT 58.515 50.000 0.00 0.00 0.00 2.40
158 159 1.136891 GCCCCGAAATTCCCAAATCTG 59.863 52.381 0.00 0.00 0.00 2.90
159 160 2.733956 CCCCGAAATTCCCAAATCTGA 58.266 47.619 0.00 0.00 0.00 3.27
161 162 3.119137 CCCCGAAATTCCCAAATCTGAAC 60.119 47.826 0.00 0.00 0.00 3.18
162 163 3.763897 CCCGAAATTCCCAAATCTGAACT 59.236 43.478 0.00 0.00 0.00 3.01
163 164 4.142381 CCCGAAATTCCCAAATCTGAACTC 60.142 45.833 0.00 0.00 0.00 3.01
164 165 4.702131 CCGAAATTCCCAAATCTGAACTCT 59.298 41.667 0.00 0.00 0.00 3.24
165 166 5.163713 CCGAAATTCCCAAATCTGAACTCTC 60.164 44.000 0.00 0.00 0.00 3.20
166 167 5.412594 CGAAATTCCCAAATCTGAACTCTCA 59.587 40.000 0.00 0.00 0.00 3.27
167 168 6.072508 CGAAATTCCCAAATCTGAACTCTCAA 60.073 38.462 0.00 0.00 0.00 3.02
169 170 7.787623 AATTCCCAAATCTGAACTCTCAAAT 57.212 32.000 0.00 0.00 0.00 2.32
171 172 6.579666 TCCCAAATCTGAACTCTCAAATTG 57.420 37.500 0.00 0.00 0.00 2.32
172 173 6.070656 TCCCAAATCTGAACTCTCAAATTGT 58.929 36.000 0.00 0.00 0.00 2.71
173 174 6.207417 TCCCAAATCTGAACTCTCAAATTGTC 59.793 38.462 0.00 0.00 0.00 3.18
174 175 6.082338 CCAAATCTGAACTCTCAAATTGTCG 58.918 40.000 0.00 0.00 0.00 4.35
175 176 5.869753 AATCTGAACTCTCAAATTGTCGG 57.130 39.130 0.00 0.00 0.00 4.79
176 177 3.067106 TCTGAACTCTCAAATTGTCGGC 58.933 45.455 0.00 0.00 0.00 5.54
177 178 1.798223 TGAACTCTCAAATTGTCGGCG 59.202 47.619 0.00 0.00 0.00 6.46
178 179 1.128692 GAACTCTCAAATTGTCGGCGG 59.871 52.381 7.21 0.00 0.00 6.13
179 180 1.298859 ACTCTCAAATTGTCGGCGGC 61.299 55.000 3.62 3.62 0.00 6.53
180 181 1.298157 CTCTCAAATTGTCGGCGGCA 61.298 55.000 11.51 11.51 0.00 5.69
181 182 1.135315 CTCAAATTGTCGGCGGCAG 59.865 57.895 15.90 2.66 0.00 4.85
182 183 1.298157 CTCAAATTGTCGGCGGCAGA 61.298 55.000 15.90 7.71 0.00 4.26
183 184 1.154225 CAAATTGTCGGCGGCAGAC 60.154 57.895 23.52 23.52 38.98 3.51
184 185 2.332654 AAATTGTCGGCGGCAGACC 61.333 57.895 26.31 11.94 37.80 3.85
196 197 2.124983 CAGACCGGCATCCACCAG 60.125 66.667 0.00 0.00 0.00 4.00
197 198 4.101448 AGACCGGCATCCACCAGC 62.101 66.667 0.00 0.00 0.00 4.85
198 199 4.408821 GACCGGCATCCACCAGCA 62.409 66.667 0.00 0.00 0.00 4.41
199 200 4.722700 ACCGGCATCCACCAGCAC 62.723 66.667 0.00 0.00 0.00 4.40
203 204 2.821366 GCATCCACCAGCACGGAG 60.821 66.667 0.00 0.00 38.63 4.63
204 205 2.124983 CATCCACCAGCACGGAGG 60.125 66.667 2.68 2.68 46.57 4.30
208 209 2.575993 CACCAGCACGGAGGAGAG 59.424 66.667 0.00 0.00 38.63 3.20
209 210 3.386237 ACCAGCACGGAGGAGAGC 61.386 66.667 0.00 0.00 38.63 4.09
225 226 3.096791 GCTCCTGCTCGAATGCAC 58.903 61.111 0.00 0.00 38.12 4.57
226 227 2.806856 GCTCCTGCTCGAATGCACG 61.807 63.158 0.00 0.00 38.12 5.34
227 228 2.125552 TCCTGCTCGAATGCACGG 60.126 61.111 0.00 2.71 38.12 4.94
229 230 1.741401 CCTGCTCGAATGCACGGAA 60.741 57.895 0.00 0.00 38.12 4.30
230 231 1.298157 CCTGCTCGAATGCACGGAAA 61.298 55.000 0.00 0.00 38.12 3.13
231 232 0.095935 CTGCTCGAATGCACGGAAAG 59.904 55.000 0.00 0.00 38.12 2.62
232 233 1.298157 TGCTCGAATGCACGGAAAGG 61.298 55.000 0.00 0.00 38.12 3.11
233 234 1.019278 GCTCGAATGCACGGAAAGGA 61.019 55.000 0.00 0.00 0.00 3.36
234 235 1.002366 CTCGAATGCACGGAAAGGAG 58.998 55.000 0.00 0.00 0.00 3.69
235 236 0.391130 TCGAATGCACGGAAAGGAGG 60.391 55.000 0.00 0.00 0.00 4.30
236 237 1.369091 CGAATGCACGGAAAGGAGGG 61.369 60.000 0.00 0.00 0.00 4.30
237 238 1.657751 GAATGCACGGAAAGGAGGGC 61.658 60.000 0.00 0.00 0.00 5.19
238 239 2.142292 AATGCACGGAAAGGAGGGCT 62.142 55.000 0.00 0.00 0.00 5.19
239 240 2.747855 GCACGGAAAGGAGGGCTG 60.748 66.667 0.00 0.00 0.00 4.85
240 241 2.747855 CACGGAAAGGAGGGCTGC 60.748 66.667 0.00 0.00 0.00 5.25
242 243 4.803908 CGGAAAGGAGGGCTGCCC 62.804 72.222 30.57 30.57 45.90 5.36
251 252 4.249513 GGGCTGCCCATCTTCTTC 57.750 61.111 32.46 0.97 44.65 2.87
253 254 2.476320 GGCTGCCCATCTTCTTCGC 61.476 63.158 7.66 0.00 0.00 4.70
254 255 1.746615 GCTGCCCATCTTCTTCGCA 60.747 57.895 0.00 0.00 0.00 5.10
255 256 2.391469 CTGCCCATCTTCTTCGCAG 58.609 57.895 0.00 0.00 40.81 5.18
256 257 1.712977 CTGCCCATCTTCTTCGCAGC 61.713 60.000 0.00 0.00 40.36 5.25
257 258 2.476320 GCCCATCTTCTTCGCAGCC 61.476 63.158 0.00 0.00 0.00 4.85
258 259 2.176273 CCCATCTTCTTCGCAGCCG 61.176 63.158 0.00 0.00 0.00 5.52
259 260 1.153568 CCATCTTCTTCGCAGCCGA 60.154 57.895 0.00 0.00 42.66 5.54
260 261 1.424493 CCATCTTCTTCGCAGCCGAC 61.424 60.000 0.00 0.00 44.30 4.79
262 263 3.843240 CTTCTTCGCAGCCGACGC 61.843 66.667 0.00 0.00 44.30 5.19
274 275 2.593436 CGACGCCACACCCCTTTT 60.593 61.111 0.00 0.00 0.00 2.27
275 276 2.613506 CGACGCCACACCCCTTTTC 61.614 63.158 0.00 0.00 0.00 2.29
276 277 1.228154 GACGCCACACCCCTTTTCT 60.228 57.895 0.00 0.00 0.00 2.52
277 278 1.228154 ACGCCACACCCCTTTTCTC 60.228 57.895 0.00 0.00 0.00 2.87
278 279 1.971695 CGCCACACCCCTTTTCTCC 60.972 63.158 0.00 0.00 0.00 3.71
279 280 1.460699 GCCACACCCCTTTTCTCCT 59.539 57.895 0.00 0.00 0.00 3.69
280 281 0.178961 GCCACACCCCTTTTCTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
281 282 1.620822 CCACACCCCTTTTCTCCTTG 58.379 55.000 0.00 0.00 0.00 3.61
282 283 0.961753 CACACCCCTTTTCTCCTTGC 59.038 55.000 0.00 0.00 0.00 4.01
283 284 0.537371 ACACCCCTTTTCTCCTTGCG 60.537 55.000 0.00 0.00 0.00 4.85
284 285 1.603739 ACCCCTTTTCTCCTTGCGC 60.604 57.895 0.00 0.00 0.00 6.09
285 286 1.303643 CCCCTTTTCTCCTTGCGCT 60.304 57.895 9.73 0.00 0.00 5.92
286 287 0.895559 CCCCTTTTCTCCTTGCGCTT 60.896 55.000 9.73 0.00 0.00 4.68
287 288 0.242017 CCCTTTTCTCCTTGCGCTTG 59.758 55.000 9.73 0.33 0.00 4.01
288 289 0.387750 CCTTTTCTCCTTGCGCTTGC 60.388 55.000 9.73 0.00 39.78 4.01
289 290 0.727122 CTTTTCTCCTTGCGCTTGCG 60.727 55.000 9.73 10.90 43.34 4.85
290 291 2.128853 TTTTCTCCTTGCGCTTGCGG 62.129 55.000 16.79 3.58 43.34 5.69
299 300 2.730604 CGCTTGCGGCCACAAAAG 60.731 61.111 7.74 3.66 37.74 2.27
300 301 2.417097 GCTTGCGGCCACAAAAGT 59.583 55.556 7.74 0.00 34.27 2.66
301 302 1.661509 GCTTGCGGCCACAAAAGTC 60.662 57.895 7.74 0.00 34.27 3.01
302 303 1.370414 CTTGCGGCCACAAAAGTCG 60.370 57.895 7.74 0.00 0.00 4.18
304 305 4.700365 GCGGCCACAAAAGTCGCC 62.700 66.667 2.24 0.00 40.44 5.54
306 307 4.700365 GGCCACAAAAGTCGCCGC 62.700 66.667 0.00 0.00 0.00 6.53
307 308 4.700365 GCCACAAAAGTCGCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
308 309 4.383602 CCACAAAAGTCGCCGCCG 62.384 66.667 0.00 0.00 0.00 6.46
348 349 3.435186 GCTGAAGCGGCCAGGAAC 61.435 66.667 2.24 0.00 32.51 3.62
349 350 2.348998 CTGAAGCGGCCAGGAACT 59.651 61.111 2.24 0.00 43.88 3.01
350 351 1.596934 CTGAAGCGGCCAGGAACTA 59.403 57.895 2.24 0.00 36.02 2.24
351 352 0.179000 CTGAAGCGGCCAGGAACTAT 59.821 55.000 2.24 0.00 36.02 2.12
353 354 1.412710 TGAAGCGGCCAGGAACTATAG 59.587 52.381 2.24 0.00 36.02 1.31
354 355 1.687123 GAAGCGGCCAGGAACTATAGA 59.313 52.381 6.78 0.00 36.02 1.98
356 357 1.041437 GCGGCCAGGAACTATAGAGT 58.959 55.000 6.78 0.00 36.02 3.24
370 371 0.192566 TAGAGTTCCCACCCACCTGT 59.807 55.000 0.00 0.00 0.00 4.00
371 372 1.128188 AGAGTTCCCACCCACCTGTC 61.128 60.000 0.00 0.00 0.00 3.51
373 374 3.246112 TTCCCACCCACCTGTCGG 61.246 66.667 0.00 0.00 0.00 4.79
397 398 3.126528 GCATTGCTGGCCTGATCC 58.873 61.111 14.77 0.00 0.00 3.36
398 399 1.755395 GCATTGCTGGCCTGATCCA 60.755 57.895 14.77 0.00 34.42 3.41
400 401 1.452651 ATTGCTGGCCTGATCCACG 60.453 57.895 14.77 0.00 31.74 4.94
407 408 4.899239 CCTGATCCACGCGCTCCC 62.899 72.222 5.73 0.00 0.00 4.30
409 410 3.781770 CTGATCCACGCGCTCCCTC 62.782 68.421 5.73 0.00 0.00 4.30
410 411 4.593864 GATCCACGCGCTCCCTCC 62.594 72.222 5.73 0.00 0.00 4.30
418 419 4.394712 CGCTCCCTCCACCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
420 421 2.529136 CTCCCTCCACCACCACCA 60.529 66.667 0.00 0.00 0.00 4.17
421 422 2.852075 TCCCTCCACCACCACCAC 60.852 66.667 0.00 0.00 0.00 4.16
423 424 3.174987 CCTCCACCACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
424 425 2.431683 CTCCACCACCACCACCAG 59.568 66.667 0.00 0.00 0.00 4.00
425 426 2.367648 TCCACCACCACCACCAGT 60.368 61.111 0.00 0.00 0.00 4.00
426 427 2.203337 CCACCACCACCACCAGTG 60.203 66.667 0.00 0.00 46.83 3.66
444 445 2.498167 GTGAGTCCACTTTGTCATGCT 58.502 47.619 0.00 0.00 40.10 3.79
445 446 2.225019 GTGAGTCCACTTTGTCATGCTG 59.775 50.000 0.00 0.00 40.10 4.41
446 447 1.198637 GAGTCCACTTTGTCATGCTGC 59.801 52.381 0.00 0.00 0.00 5.25
447 448 0.110056 GTCCACTTTGTCATGCTGCG 60.110 55.000 0.00 0.00 0.00 5.18
449 450 0.110056 CCACTTTGTCATGCTGCGAC 60.110 55.000 0.00 0.00 0.00 5.19
450 451 0.110056 CACTTTGTCATGCTGCGACC 60.110 55.000 5.43 0.00 32.15 4.79
451 452 1.237285 ACTTTGTCATGCTGCGACCC 61.237 55.000 5.43 0.00 32.15 4.46
452 453 1.228094 TTTGTCATGCTGCGACCCA 60.228 52.632 5.43 0.00 32.15 4.51
454 455 2.821366 GTCATGCTGCGACCCAGG 60.821 66.667 0.00 0.00 42.03 4.45
455 456 4.783621 TCATGCTGCGACCCAGGC 62.784 66.667 0.00 0.00 42.03 4.85
457 458 4.479993 ATGCTGCGACCCAGGCTC 62.480 66.667 0.00 0.00 42.03 4.70
493 1368 2.819550 CCCGCCTTACGCCTGTAT 59.180 61.111 0.00 0.00 41.76 2.29
496 1371 1.440060 CGCCTTACGCCTGTATGGA 59.560 57.895 10.53 0.00 44.68 3.41
497 1372 0.033504 CGCCTTACGCCTGTATGGAT 59.966 55.000 10.53 0.00 44.68 3.41
498 1373 1.512926 GCCTTACGCCTGTATGGATG 58.487 55.000 10.53 0.00 44.68 3.51
499 1374 1.878102 GCCTTACGCCTGTATGGATGG 60.878 57.143 10.53 0.00 44.68 3.51
500 1375 1.691976 CCTTACGCCTGTATGGATGGA 59.308 52.381 2.15 0.00 44.68 3.41
522 1397 7.737869 TGGATAAGAAAAGGCCACGTATAATA 58.262 34.615 5.01 0.00 0.00 0.98
559 1438 4.501559 CGACAATGATTTGGATGAACATGC 59.498 41.667 0.00 0.00 37.15 4.06
568 1447 0.659957 GATGAACATGCGCTTCTCCC 59.340 55.000 9.73 0.00 0.00 4.30
569 1448 0.254178 ATGAACATGCGCTTCTCCCT 59.746 50.000 9.73 0.00 0.00 4.20
639 1518 2.087461 GGGCCCAAGGAGGATGGAT 61.087 63.158 19.95 0.00 40.56 3.41
700 1609 0.537653 TCCATTTCATACCGTGCCGA 59.462 50.000 0.00 0.00 0.00 5.54
719 1628 3.100191 GATCGCTCCGCCGATTCG 61.100 66.667 0.00 0.00 46.90 3.34
726 1635 2.076622 CTCCGCCGATTCGTCCATCT 62.077 60.000 5.20 0.00 0.00 2.90
729 1638 1.618861 CGCCGATTCGTCCATCTATC 58.381 55.000 5.20 0.00 0.00 2.08
730 1639 1.618861 GCCGATTCGTCCATCTATCG 58.381 55.000 5.20 0.00 39.52 2.92
731 1640 1.068472 GCCGATTCGTCCATCTATCGT 60.068 52.381 5.20 0.00 38.48 3.73
732 1641 2.852748 CCGATTCGTCCATCTATCGTC 58.147 52.381 5.20 0.00 38.48 4.20
733 1642 2.225727 CCGATTCGTCCATCTATCGTCA 59.774 50.000 5.20 0.00 38.48 4.35
734 1643 3.119814 CCGATTCGTCCATCTATCGTCAT 60.120 47.826 5.20 0.00 38.48 3.06
735 1644 4.094442 CCGATTCGTCCATCTATCGTCATA 59.906 45.833 5.20 0.00 38.48 2.15
736 1645 5.259380 CGATTCGTCCATCTATCGTCATAG 58.741 45.833 0.00 0.00 36.17 2.23
737 1646 4.421033 TTCGTCCATCTATCGTCATAGC 57.579 45.455 0.00 0.00 33.10 2.97
738 1647 2.747989 TCGTCCATCTATCGTCATAGCC 59.252 50.000 0.00 0.00 33.10 3.93
739 1648 2.159366 CGTCCATCTATCGTCATAGCCC 60.159 54.545 0.00 0.00 33.10 5.19
740 1649 2.826128 GTCCATCTATCGTCATAGCCCA 59.174 50.000 0.00 0.00 33.10 5.36
741 1650 3.092301 TCCATCTATCGTCATAGCCCAG 58.908 50.000 0.00 0.00 33.10 4.45
742 1651 2.167281 CCATCTATCGTCATAGCCCAGG 59.833 54.545 0.00 0.00 33.10 4.45
743 1652 2.677542 TCTATCGTCATAGCCCAGGT 57.322 50.000 0.00 0.00 33.10 4.00
744 1653 3.801307 TCTATCGTCATAGCCCAGGTA 57.199 47.619 0.00 0.00 33.10 3.08
745 1654 3.418995 TCTATCGTCATAGCCCAGGTAC 58.581 50.000 0.00 0.00 33.10 3.34
746 1655 0.959553 ATCGTCATAGCCCAGGTACG 59.040 55.000 0.00 0.00 0.00 3.67
747 1656 0.394762 TCGTCATAGCCCAGGTACGT 60.395 55.000 0.00 0.00 0.00 3.57
748 1657 0.458669 CGTCATAGCCCAGGTACGTT 59.541 55.000 0.00 0.00 0.00 3.99
749 1658 1.677576 CGTCATAGCCCAGGTACGTTA 59.322 52.381 0.00 0.00 0.00 3.18
750 1659 2.542411 CGTCATAGCCCAGGTACGTTAC 60.542 54.545 0.00 0.00 0.00 2.50
751 1660 1.677576 TCATAGCCCAGGTACGTTACG 59.322 52.381 2.19 2.19 0.00 3.18
752 1661 1.406539 CATAGCCCAGGTACGTTACGT 59.593 52.381 16.31 16.31 44.35 3.57
785 1694 2.225068 ATCCGTAGCTTCATTCACCG 57.775 50.000 0.00 0.00 0.00 4.94
800 1709 2.526432 TCACCGGTTAGCTTCTTCTCT 58.474 47.619 2.97 0.00 0.00 3.10
835 1744 9.658799 TTTTTGTGATGGATGTTTACAAAAGAA 57.341 25.926 11.72 0.00 45.88 2.52
836 1745 9.658799 TTTTGTGATGGATGTTTACAAAAGAAA 57.341 25.926 8.87 0.00 42.71 2.52
837 1746 9.658799 TTTGTGATGGATGTTTACAAAAGAAAA 57.341 25.926 0.00 0.00 38.03 2.29
838 1747 8.870160 TGTGATGGATGTTTACAAAAGAAAAG 57.130 30.769 0.00 0.00 0.00 2.27
839 1748 8.690884 TGTGATGGATGTTTACAAAAGAAAAGA 58.309 29.630 0.00 0.00 0.00 2.52
840 1749 9.528018 GTGATGGATGTTTACAAAAGAAAAGAA 57.472 29.630 0.00 0.00 0.00 2.52
865 1774 6.566197 AAAGTGATTGTCCATCTCAACTTC 57.434 37.500 0.00 0.00 32.34 3.01
870 1779 4.982241 TTGTCCATCTCAACTTCCTCTT 57.018 40.909 0.00 0.00 0.00 2.85
873 1782 4.020751 TGTCCATCTCAACTTCCTCTTCAG 60.021 45.833 0.00 0.00 0.00 3.02
874 1783 3.517100 TCCATCTCAACTTCCTCTTCAGG 59.483 47.826 0.00 0.00 42.01 3.86
887 1796 5.144100 TCCTCTTCAGGTCTCCTTGATATC 58.856 45.833 0.00 0.00 41.28 1.63
888 1797 4.283212 CCTCTTCAGGTCTCCTTGATATCC 59.717 50.000 0.00 0.00 34.60 2.59
891 1800 3.581101 TCAGGTCTCCTTGATATCCCTG 58.419 50.000 13.04 13.04 36.87 4.45
892 1801 3.051803 TCAGGTCTCCTTGATATCCCTGT 60.052 47.826 16.69 0.00 36.88 4.00
894 1803 3.051803 AGGTCTCCTTGATATCCCTGTCA 60.052 47.826 0.00 0.00 0.00 3.58
895 1804 3.906846 GGTCTCCTTGATATCCCTGTCAT 59.093 47.826 0.00 0.00 0.00 3.06
896 1805 4.262808 GGTCTCCTTGATATCCCTGTCATG 60.263 50.000 0.00 0.00 0.00 3.07
898 1807 4.590647 TCTCCTTGATATCCCTGTCATGTC 59.409 45.833 0.00 0.00 0.00 3.06
901 1810 5.061853 CCTTGATATCCCTGTCATGTCAAG 58.938 45.833 10.57 10.57 43.73 3.02
903 1812 3.455543 TGATATCCCTGTCATGTCAAGCA 59.544 43.478 0.00 0.00 0.00 3.91
905 1814 0.764271 TCCCTGTCATGTCAAGCACA 59.236 50.000 0.00 0.00 40.18 4.57
906 1815 0.877071 CCCTGTCATGTCAAGCACAC 59.123 55.000 0.00 0.00 38.04 3.82
907 1816 1.596603 CCTGTCATGTCAAGCACACA 58.403 50.000 0.00 0.00 38.04 3.72
908 1817 2.156917 CCTGTCATGTCAAGCACACAT 58.843 47.619 0.00 0.00 38.04 3.21
909 1818 2.161012 CCTGTCATGTCAAGCACACATC 59.839 50.000 0.00 0.00 38.04 3.06
910 1819 3.072211 CTGTCATGTCAAGCACACATCT 58.928 45.455 0.00 0.00 38.04 2.90
911 1820 3.479489 TGTCATGTCAAGCACACATCTT 58.521 40.909 0.00 0.00 38.04 2.40
912 1821 3.251487 TGTCATGTCAAGCACACATCTTG 59.749 43.478 0.00 0.00 38.04 3.02
913 1822 2.815503 TCATGTCAAGCACACATCTTGG 59.184 45.455 0.00 0.00 40.82 3.61
914 1823 2.636647 TGTCAAGCACACATCTTGGA 57.363 45.000 3.33 0.00 40.82 3.53
915 1824 2.929641 TGTCAAGCACACATCTTGGAA 58.070 42.857 3.33 0.00 40.82 3.53
916 1825 3.286353 TGTCAAGCACACATCTTGGAAA 58.714 40.909 3.33 0.00 40.82 3.13
917 1826 3.698539 TGTCAAGCACACATCTTGGAAAA 59.301 39.130 3.33 0.00 40.82 2.29
918 1827 4.202040 TGTCAAGCACACATCTTGGAAAAG 60.202 41.667 3.33 0.00 40.82 2.27
920 1829 2.590821 AGCACACATCTTGGAAAAGCT 58.409 42.857 0.00 0.00 0.00 3.74
924 1833 2.694628 ACACATCTTGGAAAAGCTTGCA 59.305 40.909 0.00 0.00 0.00 4.08
925 1834 3.322828 ACACATCTTGGAAAAGCTTGCAT 59.677 39.130 0.00 0.00 32.35 3.96
927 1836 3.830755 ACATCTTGGAAAAGCTTGCATCT 59.169 39.130 0.00 0.00 32.35 2.90
946 1859 2.995939 TCTTCAAGCTTACATCGTGCAG 59.004 45.455 0.00 0.00 0.00 4.41
964 1877 4.204370 GTGCAGTTCTTCTTGTTTTAACGC 59.796 41.667 0.00 0.00 0.00 4.84
966 1879 5.034797 GCAGTTCTTCTTGTTTTAACGCTT 58.965 37.500 0.00 0.00 0.00 4.68
975 1888 3.462982 TGTTTTAACGCTTCTCTGCTCA 58.537 40.909 0.00 0.00 0.00 4.26
976 1889 3.494626 TGTTTTAACGCTTCTCTGCTCAG 59.505 43.478 0.00 0.00 0.00 3.35
1009 1926 1.465689 CGTGATTGCAAATGGACCGTC 60.466 52.381 1.71 0.00 0.00 4.79
1065 1982 3.234041 CTGCTCGACGAGAACGCG 61.234 66.667 28.43 3.53 43.96 6.01
1113 2030 2.231964 TCTCAAAGGCATCACAAATGGC 59.768 45.455 3.60 3.60 43.88 4.40
1140 2057 0.245539 CTGCTCACCAAATTGGCAGG 59.754 55.000 12.67 2.18 42.67 4.85
1161 2078 1.871077 CGGGTTTGCGGAGGTTTAC 59.129 57.895 0.00 0.00 0.00 2.01
1175 2115 4.395231 GGAGGTTTACAAGGTTACATCTGC 59.605 45.833 0.00 0.00 0.00 4.26
1197 2137 2.828520 TCAGCTAGTTTCTCCAGTCCTG 59.171 50.000 0.00 0.00 0.00 3.86
1206 2146 2.609747 TCTCCAGTCCTGCTTAGTTGT 58.390 47.619 0.00 0.00 0.00 3.32
1208 2148 1.160137 CCAGTCCTGCTTAGTTGTGC 58.840 55.000 0.00 0.00 0.00 4.57
1270 2220 2.821810 CACCACCACACACGCACA 60.822 61.111 0.00 0.00 0.00 4.57
1271 2221 2.822255 ACCACCACACACGCACAC 60.822 61.111 0.00 0.00 0.00 3.82
1273 2223 2.888051 CACCACACACGCACACGA 60.888 61.111 0.00 0.00 43.93 4.35
1359 2310 2.832931 CCGTGAAGAGGCTGTCAAG 58.167 57.895 0.00 0.00 0.00 3.02
1372 2323 1.261619 CTGTCAAGGACGTTTGCTGTC 59.738 52.381 0.00 0.00 34.95 3.51
1435 6842 3.445096 AGGCCAAGCACAAGAATATTGTC 59.555 43.478 5.01 0.00 0.00 3.18
1748 7155 3.421844 ACTTGTGGACTTAATTGGAGGC 58.578 45.455 0.00 0.00 0.00 4.70
1960 7367 2.540383 ACACTGTAAGCCATCCTCTCA 58.460 47.619 0.00 0.00 37.60 3.27
2093 7506 5.579904 ACAAATCTCATTCTCGTCAGACATG 59.420 40.000 0.41 0.00 0.00 3.21
2133 7548 5.912149 AATAATGGAGATAGTGGCAGGAA 57.088 39.130 0.00 0.00 0.00 3.36
2175 7590 7.555087 AGATGAGGATGTAAGCATAATCTAGC 58.445 38.462 0.00 0.00 35.07 3.42
2180 7595 5.348997 GGATGTAAGCATAATCTAGCCGTTC 59.651 44.000 0.00 0.00 35.07 3.95
2356 7913 9.301153 CATTTTGATATAGCACCTAAACAAACC 57.699 33.333 0.00 0.00 0.00 3.27
2439 7996 7.384660 GGTGTGAATTGCATTAACAGAAATCAA 59.615 33.333 0.00 0.00 34.34 2.57
2448 8005 3.733443 AACAGAAATCAAAGGTGCACC 57.267 42.857 29.22 29.22 0.00 5.01
2460 8017 2.583143 AGGTGCACCTTGTTTTCCTAC 58.417 47.619 33.20 2.40 46.09 3.18
2514 8071 7.062371 GGCACTATATACACGAATCAAGCTAAG 59.938 40.741 0.00 0.00 0.00 2.18
2848 8411 2.185004 ACGGCAAGTGCAGACTATTT 57.815 45.000 10.46 0.00 44.36 1.40
2869 8432 7.681939 ATTTAGACGAAACTAGCATTGGAAA 57.318 32.000 0.00 0.00 0.00 3.13
3260 8841 6.608922 AGAGGAGCTCAAGCCAATAATAAAT 58.391 36.000 17.19 0.00 43.38 1.40
3563 9214 2.472861 GGATGTGCGTCTGAATATCGTG 59.527 50.000 0.00 0.00 0.00 4.35
3760 9732 4.062991 GTTGGCGGTGGGAGTTATATTAG 58.937 47.826 0.00 0.00 0.00 1.73
3839 9814 3.689347 TGGAATTGTGATCTTGGAGGTG 58.311 45.455 0.00 0.00 0.00 4.00
4030 10017 5.883115 TGGAATGTATTAACTTTGATGCGGA 59.117 36.000 0.00 0.00 0.00 5.54
4031 10018 6.545666 TGGAATGTATTAACTTTGATGCGGAT 59.454 34.615 0.00 0.00 0.00 4.18
4032 10019 7.078228 GGAATGTATTAACTTTGATGCGGATC 58.922 38.462 10.37 10.37 0.00 3.36
4034 10021 6.993786 TGTATTAACTTTGATGCGGATCAA 57.006 33.333 26.10 26.10 45.15 2.57
4165 10154 6.529125 GTGCAAACAACATTCATATCTTGGAG 59.471 38.462 0.00 0.00 0.00 3.86
4271 10266 0.947244 AGAGAAAGTTTGCTGCACCG 59.053 50.000 0.00 0.00 0.00 4.94
4273 10268 1.333619 GAGAAAGTTTGCTGCACCGAA 59.666 47.619 0.00 0.00 0.00 4.30
4303 10298 3.042682 TCAAGAGTGACTGGGTGGTAAA 58.957 45.455 0.00 0.00 0.00 2.01
4311 10306 3.653836 TGACTGGGTGGTAAATGGTAACT 59.346 43.478 0.00 0.00 37.61 2.24
4330 10325 6.757947 GGTAACTAAACAAATGCATGCATCAT 59.242 34.615 32.25 21.34 35.31 2.45
4360 10355 1.446791 CTCTGGAGCAGGAGGATGC 59.553 63.158 0.00 0.00 46.88 3.91
4371 10366 1.283321 AGGAGGATGCAAAGGAAGGAC 59.717 52.381 0.00 0.00 0.00 3.85
4372 10367 1.373570 GAGGATGCAAAGGAAGGACG 58.626 55.000 0.00 0.00 0.00 4.79
4387 10382 1.255667 GGACGACCCAAGCTACTCCA 61.256 60.000 0.00 0.00 34.14 3.86
4394 10389 1.757699 CCCAAGCTACTCCACCTACTC 59.242 57.143 0.00 0.00 0.00 2.59
4395 10390 1.757699 CCAAGCTACTCCACCTACTCC 59.242 57.143 0.00 0.00 0.00 3.85
4396 10391 1.405821 CAAGCTACTCCACCTACTCCG 59.594 57.143 0.00 0.00 0.00 4.63
4397 10392 0.106619 AGCTACTCCACCTACTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
4446 10449 1.738099 CCCGCCTTCGTGTCTGAAG 60.738 63.158 0.00 0.00 43.98 3.02
4447 10450 2.383527 CCGCCTTCGTGTCTGAAGC 61.384 63.158 0.00 0.00 43.21 3.86
4448 10451 1.373497 CGCCTTCGTGTCTGAAGCT 60.373 57.895 0.00 0.00 43.21 3.74
4449 10452 1.347817 CGCCTTCGTGTCTGAAGCTC 61.348 60.000 0.00 0.00 43.21 4.09
4450 10453 1.016653 GCCTTCGTGTCTGAAGCTCC 61.017 60.000 0.00 0.00 43.21 4.70
4451 10454 0.734253 CCTTCGTGTCTGAAGCTCCG 60.734 60.000 0.00 0.00 43.21 4.63
4452 10455 0.734253 CTTCGTGTCTGAAGCTCCGG 60.734 60.000 0.00 0.00 38.98 5.14
4453 10456 1.461091 TTCGTGTCTGAAGCTCCGGT 61.461 55.000 0.00 0.00 0.00 5.28
4454 10457 1.734477 CGTGTCTGAAGCTCCGGTG 60.734 63.158 0.00 0.00 0.00 4.94
4455 10458 1.367840 GTGTCTGAAGCTCCGGTGT 59.632 57.895 0.00 0.00 0.00 4.16
4456 10459 0.667792 GTGTCTGAAGCTCCGGTGTC 60.668 60.000 0.00 0.00 0.00 3.67
4488 10491 4.958563 GCGCTTCGTTTATCTGAATTTCTC 59.041 41.667 0.00 0.00 0.00 2.87
4503 10506 9.177608 TCTGAATTTCTCTTCTGTTTTTCTCAA 57.822 29.630 0.00 0.00 0.00 3.02
4504 10507 9.448294 CTGAATTTCTCTTCTGTTTTTCTCAAG 57.552 33.333 0.00 0.00 0.00 3.02
4506 10509 9.794685 GAATTTCTCTTCTGTTTTTCTCAAGTT 57.205 29.630 0.00 0.00 0.00 2.66
4507 10510 9.794685 AATTTCTCTTCTGTTTTTCTCAAGTTC 57.205 29.630 0.00 0.00 0.00 3.01
4508 10511 6.589830 TCTCTTCTGTTTTTCTCAAGTTCG 57.410 37.500 0.00 0.00 0.00 3.95
4509 10512 5.523916 TCTCTTCTGTTTTTCTCAAGTTCGG 59.476 40.000 0.00 0.00 0.00 4.30
4510 10513 5.183228 TCTTCTGTTTTTCTCAAGTTCGGT 58.817 37.500 0.00 0.00 0.00 4.69
4519 10522 1.599797 CAAGTTCGGTGTGTCCCCC 60.600 63.158 0.00 0.00 0.00 5.40
4530 10533 1.272760 TGTGTCCCCCACTTGTTTTGT 60.273 47.619 0.00 0.00 44.81 2.83
4551 10554 5.673514 TGTTTTTCTCTGTACGTAAAGGGT 58.326 37.500 12.46 0.00 0.00 4.34
4554 10557 7.224557 TGTTTTTCTCTGTACGTAAAGGGTAAC 59.775 37.037 12.46 14.16 0.00 2.50
4599 10602 7.174599 GGAAATGCATCAATAATCAGACTAGCT 59.825 37.037 0.00 0.00 0.00 3.32
4600 10603 7.436430 AATGCATCAATAATCAGACTAGCTG 57.564 36.000 0.00 7.59 46.31 4.24
4601 10604 5.922053 TGCATCAATAATCAGACTAGCTGT 58.078 37.500 0.00 0.00 45.14 4.40
4602 10605 5.756833 TGCATCAATAATCAGACTAGCTGTG 59.243 40.000 0.00 0.00 45.14 3.66
4603 10606 5.987953 GCATCAATAATCAGACTAGCTGTGA 59.012 40.000 0.00 9.23 45.14 3.58
4604 10607 6.481313 GCATCAATAATCAGACTAGCTGTGAA 59.519 38.462 0.00 2.59 45.14 3.18
4605 10608 7.307278 GCATCAATAATCAGACTAGCTGTGAAG 60.307 40.741 0.00 7.72 45.14 3.02
4606 10609 6.577103 TCAATAATCAGACTAGCTGTGAAGG 58.423 40.000 0.00 2.97 45.14 3.46
4607 10610 6.155221 TCAATAATCAGACTAGCTGTGAAGGT 59.845 38.462 0.00 0.00 45.14 3.50
4608 10611 7.342026 TCAATAATCAGACTAGCTGTGAAGGTA 59.658 37.037 0.00 0.00 45.14 3.08
4609 10612 7.661536 ATAATCAGACTAGCTGTGAAGGTAA 57.338 36.000 0.00 0.00 45.14 2.85
4610 10613 6.360370 AATCAGACTAGCTGTGAAGGTAAA 57.640 37.500 0.00 0.00 45.14 2.01
4611 10614 5.135508 TCAGACTAGCTGTGAAGGTAAAC 57.864 43.478 0.00 0.00 45.14 2.01
4612 10615 4.833380 TCAGACTAGCTGTGAAGGTAAACT 59.167 41.667 0.00 0.00 45.14 2.66
4613 10616 5.304614 TCAGACTAGCTGTGAAGGTAAACTT 59.695 40.000 0.00 0.00 45.14 2.66
4614 10617 5.635700 CAGACTAGCTGTGAAGGTAAACTTC 59.364 44.000 0.00 0.00 44.48 3.01
4615 10618 7.545906 CAGACTAGCTGTGAAGGTAAACTTCG 61.546 46.154 0.00 0.00 45.77 3.79
4639 10664 7.225931 TCGCTTGTTGTGTTAGATAAAAGAAGT 59.774 33.333 0.00 0.00 0.00 3.01
4783 10817 2.890945 ACTACATTTTGTCAGGGGTTGC 59.109 45.455 0.00 0.00 0.00 4.17
4832 10868 7.439157 TTCAGTGACTCAAACATATTGGAAG 57.561 36.000 0.00 0.00 0.00 3.46
4945 10981 1.153628 AAGCGCGACACATAGGGTC 60.154 57.895 12.10 0.00 0.00 4.46
5064 11100 7.513371 ACCACGGATTAGAAAAATGTTAACA 57.487 32.000 11.41 11.41 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.150028 TGCACACAACTAGTTATATTATCCCTA 57.850 33.333 8.04 0.00 0.00 3.53
10 11 7.931948 GTGCACACAACTAGTTATATTATCCCT 59.068 37.037 13.17 0.00 0.00 4.20
13 14 7.169308 AGCGTGCACACAACTAGTTATATTATC 59.831 37.037 18.64 0.00 0.00 1.75
14 15 6.984474 AGCGTGCACACAACTAGTTATATTAT 59.016 34.615 18.64 0.00 0.00 1.28
16 17 5.175859 AGCGTGCACACAACTAGTTATATT 58.824 37.500 18.64 0.00 0.00 1.28
17 18 4.755411 AGCGTGCACACAACTAGTTATAT 58.245 39.130 18.64 0.00 0.00 0.86
19 20 2.993899 GAGCGTGCACACAACTAGTTAT 59.006 45.455 18.64 0.00 0.00 1.89
20 21 2.400399 GAGCGTGCACACAACTAGTTA 58.600 47.619 18.64 0.00 0.00 2.24
21 22 1.217882 GAGCGTGCACACAACTAGTT 58.782 50.000 18.64 1.12 0.00 2.24
22 23 0.600255 GGAGCGTGCACACAACTAGT 60.600 55.000 18.64 0.00 0.00 2.57
23 24 1.617755 CGGAGCGTGCACACAACTAG 61.618 60.000 18.64 0.00 0.00 2.57
24 25 1.663388 CGGAGCGTGCACACAACTA 60.663 57.895 18.64 0.00 0.00 2.24
25 26 2.358193 TACGGAGCGTGCACACAACT 62.358 55.000 18.64 8.03 41.39 3.16
26 27 1.952133 TACGGAGCGTGCACACAAC 60.952 57.895 18.64 5.63 41.39 3.32
27 28 1.952133 GTACGGAGCGTGCACACAA 60.952 57.895 18.64 0.00 41.70 3.33
28 29 2.355363 GTACGGAGCGTGCACACA 60.355 61.111 18.64 0.00 41.70 3.72
29 30 3.467119 CGTACGGAGCGTGCACAC 61.467 66.667 18.64 7.31 42.16 3.82
33 34 3.913573 CATGCGTACGGAGCGTGC 61.914 66.667 18.39 0.00 43.43 5.34
35 36 2.344521 TATGCATGCGTACGGAGCGT 62.345 55.000 18.39 20.65 44.35 5.07
36 37 1.008875 ATATGCATGCGTACGGAGCG 61.009 55.000 21.59 10.91 37.44 5.03
37 38 0.716108 GATATGCATGCGTACGGAGC 59.284 55.000 21.59 18.72 0.00 4.70
40 41 0.984829 CGAGATATGCATGCGTACGG 59.015 55.000 21.59 7.70 0.00 4.02
41 42 0.363512 GCGAGATATGCATGCGTACG 59.636 55.000 21.59 19.99 0.00 3.67
42 43 1.702886 AGCGAGATATGCATGCGTAC 58.297 50.000 21.59 14.79 33.85 3.67
44 45 2.438868 TAAGCGAGATATGCATGCGT 57.561 45.000 18.07 18.07 33.85 5.24
45 46 2.093310 CCTTAAGCGAGATATGCATGCG 59.907 50.000 14.09 8.93 33.85 4.73
46 47 2.159599 GCCTTAAGCGAGATATGCATGC 60.160 50.000 11.82 11.82 33.85 4.06
47 48 3.736530 GCCTTAAGCGAGATATGCATG 57.263 47.619 10.16 0.00 33.85 4.06
59 60 1.472878 GTGCAGGGTTAAGCCTTAAGC 59.527 52.381 23.58 22.39 41.57 3.09
60 61 2.790433 TGTGCAGGGTTAAGCCTTAAG 58.210 47.619 23.58 13.66 37.43 1.85
61 62 2.961531 TGTGCAGGGTTAAGCCTTAA 57.038 45.000 23.58 11.86 37.43 1.85
62 63 3.088532 CAATGTGCAGGGTTAAGCCTTA 58.911 45.455 23.58 12.85 37.43 2.69
63 64 1.895131 CAATGTGCAGGGTTAAGCCTT 59.105 47.619 23.58 6.24 37.43 4.35
64 65 1.549203 CAATGTGCAGGGTTAAGCCT 58.451 50.000 20.62 20.62 37.43 4.58
65 66 0.532115 CCAATGTGCAGGGTTAAGCC 59.468 55.000 16.13 16.13 0.00 4.35
66 67 0.108662 GCCAATGTGCAGGGTTAAGC 60.109 55.000 0.00 0.00 0.00 3.09
67 68 0.171007 CGCCAATGTGCAGGGTTAAG 59.829 55.000 0.00 0.00 0.00 1.85
68 69 0.538516 ACGCCAATGTGCAGGGTTAA 60.539 50.000 0.00 0.00 0.00 2.01
70 71 2.203480 ACGCCAATGTGCAGGGTT 60.203 55.556 0.00 0.00 0.00 4.11
71 72 2.672996 GACGCCAATGTGCAGGGT 60.673 61.111 0.00 0.00 0.00 4.34
82 83 2.045280 CAAAACCCATTGGACGCCA 58.955 52.632 3.62 0.00 34.81 5.69
83 84 1.374125 GCAAAACCCATTGGACGCC 60.374 57.895 3.62 0.00 34.81 5.68
84 85 0.885196 TAGCAAAACCCATTGGACGC 59.115 50.000 3.62 0.00 34.81 5.19
85 86 1.472480 CCTAGCAAAACCCATTGGACG 59.528 52.381 3.62 0.00 34.81 4.79
86 87 1.204704 GCCTAGCAAAACCCATTGGAC 59.795 52.381 3.62 0.00 34.81 4.02
87 88 1.555967 GCCTAGCAAAACCCATTGGA 58.444 50.000 3.62 0.00 34.81 3.53
88 89 0.536724 GGCCTAGCAAAACCCATTGG 59.463 55.000 0.00 0.00 37.80 3.16
89 90 1.265236 TGGCCTAGCAAAACCCATTG 58.735 50.000 3.32 0.00 0.00 2.82
90 91 1.901833 CTTGGCCTAGCAAAACCCATT 59.098 47.619 3.32 0.00 0.00 3.16
91 92 1.560505 CTTGGCCTAGCAAAACCCAT 58.439 50.000 3.32 0.00 0.00 4.00
93 94 1.591703 GCTTGGCCTAGCAAAACCC 59.408 57.895 30.78 2.24 40.89 4.11
105 106 0.752658 AAAGGAAACAGTGGCTTGGC 59.247 50.000 0.00 0.00 0.00 4.52
106 107 2.430332 TGAAAAGGAAACAGTGGCTTGG 59.570 45.455 0.00 0.00 0.00 3.61
107 108 3.131046 AGTGAAAAGGAAACAGTGGCTTG 59.869 43.478 0.00 0.00 0.00 4.01
108 109 3.365472 AGTGAAAAGGAAACAGTGGCTT 58.635 40.909 0.00 0.00 0.00 4.35
109 110 2.952310 GAGTGAAAAGGAAACAGTGGCT 59.048 45.455 0.00 0.00 0.00 4.75
110 111 2.952310 AGAGTGAAAAGGAAACAGTGGC 59.048 45.455 0.00 0.00 0.00 5.01
113 114 3.891049 AGCAGAGTGAAAAGGAAACAGT 58.109 40.909 0.00 0.00 0.00 3.55
114 115 4.907879 AAGCAGAGTGAAAAGGAAACAG 57.092 40.909 0.00 0.00 0.00 3.16
116 117 4.363138 CCAAAGCAGAGTGAAAAGGAAAC 58.637 43.478 0.00 0.00 0.00 2.78
117 118 3.181476 GCCAAAGCAGAGTGAAAAGGAAA 60.181 43.478 0.00 0.00 39.53 3.13
119 120 1.956477 GCCAAAGCAGAGTGAAAAGGA 59.044 47.619 0.00 0.00 39.53 3.36
120 121 1.000171 GGCCAAAGCAGAGTGAAAAGG 60.000 52.381 0.00 0.00 42.56 3.11
121 122 1.000171 GGGCCAAAGCAGAGTGAAAAG 60.000 52.381 4.39 0.00 42.56 2.27
122 123 1.039856 GGGCCAAAGCAGAGTGAAAA 58.960 50.000 4.39 0.00 42.56 2.29
123 124 0.827507 GGGGCCAAAGCAGAGTGAAA 60.828 55.000 4.39 0.00 42.56 2.69
124 125 1.228552 GGGGCCAAAGCAGAGTGAA 60.229 57.895 4.39 0.00 42.56 3.18
125 126 2.436109 GGGGCCAAAGCAGAGTGA 59.564 61.111 4.39 0.00 42.56 3.41
126 127 3.058160 CGGGGCCAAAGCAGAGTG 61.058 66.667 4.39 0.00 42.56 3.51
128 129 0.967380 ATTTCGGGGCCAAAGCAGAG 60.967 55.000 4.39 0.00 42.56 3.35
129 130 0.541764 AATTTCGGGGCCAAAGCAGA 60.542 50.000 4.39 0.00 42.56 4.26
130 131 0.108662 GAATTTCGGGGCCAAAGCAG 60.109 55.000 4.39 0.00 42.56 4.24
131 132 1.540435 GGAATTTCGGGGCCAAAGCA 61.540 55.000 4.39 0.00 42.56 3.91
132 133 1.218047 GGAATTTCGGGGCCAAAGC 59.782 57.895 4.39 0.00 38.76 3.51
133 134 0.902516 TGGGAATTTCGGGGCCAAAG 60.903 55.000 4.39 0.00 0.00 2.77
134 135 0.471971 TTGGGAATTTCGGGGCCAAA 60.472 50.000 4.39 0.00 0.00 3.28
137 138 0.464036 GATTTGGGAATTTCGGGGCC 59.536 55.000 0.00 0.00 0.00 5.80
138 139 1.136891 CAGATTTGGGAATTTCGGGGC 59.863 52.381 0.00 0.00 0.00 5.80
139 140 2.733956 TCAGATTTGGGAATTTCGGGG 58.266 47.619 0.00 0.00 0.00 5.73
140 141 3.763897 AGTTCAGATTTGGGAATTTCGGG 59.236 43.478 0.00 0.00 0.00 5.14
141 142 4.702131 AGAGTTCAGATTTGGGAATTTCGG 59.298 41.667 0.00 0.00 0.00 4.30
142 143 5.412594 TGAGAGTTCAGATTTGGGAATTTCG 59.587 40.000 0.00 0.00 0.00 3.46
143 144 6.824305 TGAGAGTTCAGATTTGGGAATTTC 57.176 37.500 0.00 0.00 0.00 2.17
144 145 7.601705 TTTGAGAGTTCAGATTTGGGAATTT 57.398 32.000 0.00 0.00 34.15 1.82
145 146 7.787623 ATTTGAGAGTTCAGATTTGGGAATT 57.212 32.000 0.00 0.00 34.15 2.17
146 147 7.234166 ACAATTTGAGAGTTCAGATTTGGGAAT 59.766 33.333 2.79 0.00 36.35 3.01
148 149 6.070656 ACAATTTGAGAGTTCAGATTTGGGA 58.929 36.000 2.79 0.00 36.35 4.37
149 150 6.336842 ACAATTTGAGAGTTCAGATTTGGG 57.663 37.500 2.79 0.00 36.35 4.12
150 151 6.082338 CGACAATTTGAGAGTTCAGATTTGG 58.918 40.000 2.79 0.00 36.35 3.28
151 152 6.082338 CCGACAATTTGAGAGTTCAGATTTG 58.918 40.000 2.79 0.00 36.35 2.32
153 154 4.154918 GCCGACAATTTGAGAGTTCAGATT 59.845 41.667 2.79 0.00 38.32 2.40
154 155 3.686726 GCCGACAATTTGAGAGTTCAGAT 59.313 43.478 2.79 0.00 34.15 2.90
155 156 3.067106 GCCGACAATTTGAGAGTTCAGA 58.933 45.455 2.79 0.00 34.15 3.27
156 157 2.159787 CGCCGACAATTTGAGAGTTCAG 60.160 50.000 2.79 0.00 34.15 3.02
157 158 1.798223 CGCCGACAATTTGAGAGTTCA 59.202 47.619 2.79 0.00 0.00 3.18
158 159 1.128692 CCGCCGACAATTTGAGAGTTC 59.871 52.381 2.79 0.00 0.00 3.01
159 160 1.156736 CCGCCGACAATTTGAGAGTT 58.843 50.000 2.79 0.00 0.00 3.01
161 162 1.298157 TGCCGCCGACAATTTGAGAG 61.298 55.000 2.79 0.00 0.00 3.20
162 163 1.298157 CTGCCGCCGACAATTTGAGA 61.298 55.000 2.79 0.00 0.00 3.27
163 164 1.135315 CTGCCGCCGACAATTTGAG 59.865 57.895 2.79 0.00 0.00 3.02
164 165 1.302112 TCTGCCGCCGACAATTTGA 60.302 52.632 2.79 0.00 0.00 2.69
165 166 1.154225 GTCTGCCGCCGACAATTTG 60.154 57.895 9.81 0.00 0.00 2.32
166 167 2.332654 GGTCTGCCGCCGACAATTT 61.333 57.895 15.72 0.00 33.11 1.82
167 168 2.746277 GGTCTGCCGCCGACAATT 60.746 61.111 15.72 0.00 33.11 2.32
178 179 4.408821 TGGTGGATGCCGGTCTGC 62.409 66.667 1.90 0.00 0.00 4.26
179 180 2.124983 CTGGTGGATGCCGGTCTG 60.125 66.667 1.90 0.00 0.00 3.51
180 181 4.101448 GCTGGTGGATGCCGGTCT 62.101 66.667 1.90 0.00 37.24 3.85
181 182 4.408821 TGCTGGTGGATGCCGGTC 62.409 66.667 1.90 0.00 37.24 4.79
182 183 4.722700 GTGCTGGTGGATGCCGGT 62.723 66.667 1.90 0.00 37.24 5.28
185 186 4.408821 TCCGTGCTGGTGGATGCC 62.409 66.667 0.00 0.00 39.52 4.40
186 187 2.821366 CTCCGTGCTGGTGGATGC 60.821 66.667 0.00 0.00 39.52 3.91
192 193 3.386237 GCTCTCCTCCGTGCTGGT 61.386 66.667 0.00 0.00 39.52 4.00
193 194 3.073735 AGCTCTCCTCCGTGCTGG 61.074 66.667 0.00 0.00 40.09 4.85
194 195 2.493973 GAGCTCTCCTCCGTGCTG 59.506 66.667 6.43 0.00 34.24 4.41
208 209 3.096791 GTGCATTCGAGCAGGAGC 58.903 61.111 0.00 0.00 46.69 4.70
212 213 0.095935 CTTTCCGTGCATTCGAGCAG 59.904 55.000 0.00 0.00 46.69 4.24
213 214 1.298157 CCTTTCCGTGCATTCGAGCA 61.298 55.000 0.00 0.00 43.35 4.26
215 216 1.002366 CTCCTTTCCGTGCATTCGAG 58.998 55.000 0.00 0.00 0.00 4.04
217 218 1.369091 CCCTCCTTTCCGTGCATTCG 61.369 60.000 0.00 0.00 0.00 3.34
218 219 1.657751 GCCCTCCTTTCCGTGCATTC 61.658 60.000 0.00 0.00 0.00 2.67
220 221 2.044946 GCCCTCCTTTCCGTGCAT 60.045 61.111 0.00 0.00 0.00 3.96
221 222 3.249189 AGCCCTCCTTTCCGTGCA 61.249 61.111 0.00 0.00 0.00 4.57
222 223 2.747855 CAGCCCTCCTTTCCGTGC 60.748 66.667 0.00 0.00 0.00 5.34
224 225 4.035102 GGCAGCCCTCCTTTCCGT 62.035 66.667 0.00 0.00 0.00 4.69
225 226 4.803908 GGGCAGCCCTCCTTTCCG 62.804 72.222 24.99 0.00 41.34 4.30
226 227 2.918300 GATGGGCAGCCCTCCTTTCC 62.918 65.000 31.51 8.55 45.70 3.13
227 228 1.454663 GATGGGCAGCCCTCCTTTC 60.455 63.158 31.51 15.55 45.70 2.62
229 230 1.931007 GAAGATGGGCAGCCCTCCTT 61.931 60.000 31.51 29.24 45.70 3.36
230 231 2.286732 AAGATGGGCAGCCCTCCT 60.287 61.111 31.51 23.31 45.70 3.69
231 232 1.931007 AAGAAGATGGGCAGCCCTCC 61.931 60.000 31.51 21.47 45.70 4.30
232 233 0.465278 GAAGAAGATGGGCAGCCCTC 60.465 60.000 31.51 23.76 45.70 4.30
233 234 1.611965 GAAGAAGATGGGCAGCCCT 59.388 57.895 31.51 16.85 45.70 5.19
234 235 1.821332 CGAAGAAGATGGGCAGCCC 60.821 63.158 25.54 25.54 45.71 5.19
235 236 2.476320 GCGAAGAAGATGGGCAGCC 61.476 63.158 1.26 1.26 0.00 4.85
236 237 1.712977 CTGCGAAGAAGATGGGCAGC 61.713 60.000 0.00 0.00 43.74 5.25
237 238 2.391469 CTGCGAAGAAGATGGGCAG 58.609 57.895 0.00 0.00 44.19 4.85
238 239 1.746615 GCTGCGAAGAAGATGGGCA 60.747 57.895 0.00 0.00 0.00 5.36
239 240 2.476320 GGCTGCGAAGAAGATGGGC 61.476 63.158 0.00 0.00 0.00 5.36
240 241 2.176273 CGGCTGCGAAGAAGATGGG 61.176 63.158 0.00 0.00 0.00 4.00
242 243 1.746727 CGTCGGCTGCGAAGAAGATG 61.747 60.000 0.00 0.00 0.00 2.90
244 245 2.126463 CGTCGGCTGCGAAGAAGA 60.126 61.111 0.00 0.00 0.00 2.87
245 246 3.843240 GCGTCGGCTGCGAAGAAG 61.843 66.667 12.56 5.99 35.83 2.85
256 257 4.636435 AAAGGGGTGTGGCGTCGG 62.636 66.667 0.00 0.00 0.00 4.79
257 258 2.593436 AAAAGGGGTGTGGCGTCG 60.593 61.111 0.00 0.00 0.00 5.12
258 259 1.228154 AGAAAAGGGGTGTGGCGTC 60.228 57.895 0.00 0.00 0.00 5.19
259 260 1.228154 GAGAAAAGGGGTGTGGCGT 60.228 57.895 0.00 0.00 0.00 5.68
260 261 1.971695 GGAGAAAAGGGGTGTGGCG 60.972 63.158 0.00 0.00 0.00 5.69
262 263 1.620822 CAAGGAGAAAAGGGGTGTGG 58.379 55.000 0.00 0.00 0.00 4.17
263 264 0.961753 GCAAGGAGAAAAGGGGTGTG 59.038 55.000 0.00 0.00 0.00 3.82
264 265 0.537371 CGCAAGGAGAAAAGGGGTGT 60.537 55.000 0.00 0.00 0.00 4.16
265 266 1.866853 GCGCAAGGAGAAAAGGGGTG 61.867 60.000 0.30 0.00 38.28 4.61
266 267 1.603739 GCGCAAGGAGAAAAGGGGT 60.604 57.895 0.30 0.00 38.28 4.95
268 269 0.242017 CAAGCGCAAGGAGAAAAGGG 59.758 55.000 11.47 0.00 38.28 3.95
269 270 0.387750 GCAAGCGCAAGGAGAAAAGG 60.388 55.000 11.47 0.00 38.36 3.11
270 271 0.727122 CGCAAGCGCAAGGAGAAAAG 60.727 55.000 11.47 0.00 38.40 2.27
271 272 1.282570 CGCAAGCGCAAGGAGAAAA 59.717 52.632 11.47 0.00 38.40 2.29
281 282 4.940593 TTTTGTGGCCGCAAGCGC 62.941 61.111 29.22 0.00 45.17 5.92
282 283 2.730604 CTTTTGTGGCCGCAAGCG 60.731 61.111 29.22 20.48 45.17 4.68
283 284 1.661509 GACTTTTGTGGCCGCAAGC 60.662 57.895 29.22 17.14 42.60 4.01
284 285 1.370414 CGACTTTTGTGGCCGCAAG 60.370 57.895 29.22 22.01 0.00 4.01
285 286 2.718731 CGACTTTTGTGGCCGCAA 59.281 55.556 27.63 27.63 0.00 4.85
286 287 3.959975 GCGACTTTTGTGGCCGCA 61.960 61.111 16.89 16.89 46.39 5.69
291 292 4.383602 CGGCGGCGACTTTTGTGG 62.384 66.667 29.19 0.00 0.00 4.17
331 332 2.521958 TAGTTCCTGGCCGCTTCAGC 62.522 60.000 0.00 0.00 37.78 4.26
332 333 0.179000 ATAGTTCCTGGCCGCTTCAG 59.821 55.000 0.00 0.00 0.00 3.02
334 335 1.687123 TCTATAGTTCCTGGCCGCTTC 59.313 52.381 0.00 0.00 0.00 3.86
335 336 1.689273 CTCTATAGTTCCTGGCCGCTT 59.311 52.381 0.00 0.00 0.00 4.68
337 338 1.041437 ACTCTATAGTTCCTGGCCGC 58.959 55.000 0.00 0.00 29.00 6.53
347 348 2.318207 AGGTGGGTGGGAACTCTATAGT 59.682 50.000 0.00 0.00 37.65 2.12
348 349 2.700897 CAGGTGGGTGGGAACTCTATAG 59.299 54.545 0.00 0.00 0.00 1.31
349 350 2.045326 ACAGGTGGGTGGGAACTCTATA 59.955 50.000 0.00 0.00 0.00 1.31
350 351 1.203440 ACAGGTGGGTGGGAACTCTAT 60.203 52.381 0.00 0.00 0.00 1.98
351 352 0.192566 ACAGGTGGGTGGGAACTCTA 59.807 55.000 0.00 0.00 0.00 2.43
353 354 1.375326 GACAGGTGGGTGGGAACTC 59.625 63.158 0.00 0.00 0.00 3.01
354 355 2.516888 CGACAGGTGGGTGGGAACT 61.517 63.158 0.00 0.00 0.00 3.01
356 357 3.246112 CCGACAGGTGGGTGGGAA 61.246 66.667 0.00 0.00 38.79 3.97
380 381 1.755395 TGGATCAGGCCAGCAATGC 60.755 57.895 5.01 0.00 33.10 3.56
381 382 1.721664 CGTGGATCAGGCCAGCAATG 61.722 60.000 5.01 0.00 38.95 2.82
382 383 1.452651 CGTGGATCAGGCCAGCAAT 60.453 57.895 5.01 0.00 38.95 3.56
383 384 2.046023 CGTGGATCAGGCCAGCAA 60.046 61.111 5.01 0.00 38.95 3.91
384 385 4.783621 GCGTGGATCAGGCCAGCA 62.784 66.667 5.01 0.00 39.02 4.41
392 393 3.838271 GAGGGAGCGCGTGGATCA 61.838 66.667 8.43 0.00 30.89 2.92
393 394 4.593864 GGAGGGAGCGCGTGGATC 62.594 72.222 8.43 0.75 0.00 3.36
402 403 4.035102 GGTGGTGGTGGAGGGAGC 62.035 72.222 0.00 0.00 0.00 4.70
403 404 2.529136 TGGTGGTGGTGGAGGGAG 60.529 66.667 0.00 0.00 0.00 4.30
405 406 3.966543 GGTGGTGGTGGTGGAGGG 61.967 72.222 0.00 0.00 0.00 4.30
406 407 3.174987 TGGTGGTGGTGGTGGAGG 61.175 66.667 0.00 0.00 0.00 4.30
407 408 2.431683 CTGGTGGTGGTGGTGGAG 59.568 66.667 0.00 0.00 0.00 3.86
409 410 2.203337 CACTGGTGGTGGTGGTGG 60.203 66.667 0.00 0.00 41.90 4.61
410 411 1.227943 CTCACTGGTGGTGGTGGTG 60.228 63.158 0.70 0.00 45.38 4.17
413 414 1.071471 GGACTCACTGGTGGTGGTG 59.929 63.158 0.70 0.00 45.38 4.17
414 415 1.383943 TGGACTCACTGGTGGTGGT 60.384 57.895 0.70 0.00 45.38 4.16
415 416 1.071471 GTGGACTCACTGGTGGTGG 59.929 63.158 0.70 0.00 45.38 4.61
416 417 4.779475 GTGGACTCACTGGTGGTG 57.221 61.111 0.70 0.00 46.60 4.17
424 425 2.225019 CAGCATGACAAAGTGGACTCAC 59.775 50.000 0.00 0.00 40.93 3.51
425 426 2.497138 CAGCATGACAAAGTGGACTCA 58.503 47.619 0.00 0.00 39.69 3.41
426 427 1.198637 GCAGCATGACAAAGTGGACTC 59.801 52.381 0.00 0.00 39.69 3.36
427 428 1.242076 GCAGCATGACAAAGTGGACT 58.758 50.000 0.00 0.00 39.69 3.85
428 429 0.110056 CGCAGCATGACAAAGTGGAC 60.110 55.000 0.00 0.00 39.69 4.02
429 430 0.250252 TCGCAGCATGACAAAGTGGA 60.250 50.000 0.00 0.00 39.69 4.02
430 431 0.110056 GTCGCAGCATGACAAAGTGG 60.110 55.000 0.00 0.00 39.69 4.00
431 432 0.110056 GGTCGCAGCATGACAAAGTG 60.110 55.000 0.00 0.00 39.69 3.16
434 435 1.228094 TGGGTCGCAGCATGACAAA 60.228 52.632 0.00 0.00 39.69 2.83
435 436 1.672030 CTGGGTCGCAGCATGACAA 60.672 57.895 3.69 0.00 39.69 3.18
436 437 2.046988 CTGGGTCGCAGCATGACA 60.047 61.111 3.69 0.00 39.69 3.58
438 439 4.783621 GCCTGGGTCGCAGCATGA 62.784 66.667 11.34 0.00 39.69 3.07
440 441 4.479993 GAGCCTGGGTCGCAGCAT 62.480 66.667 10.52 1.85 0.00 3.79
458 459 3.064324 CTTTTCAGGGCCCTGCGG 61.064 66.667 42.34 27.12 43.31 5.69
459 460 3.752339 GCTTTTCAGGGCCCTGCG 61.752 66.667 42.34 29.48 43.31 5.18
460 461 3.385384 GGCTTTTCAGGGCCCTGC 61.385 66.667 42.34 31.20 43.31 4.85
467 468 1.644786 CGTAAGGCGGGCTTTTCAGG 61.645 60.000 22.38 6.50 36.85 3.86
468 469 1.794222 CGTAAGGCGGGCTTTTCAG 59.206 57.895 22.38 7.71 36.85 3.02
469 470 2.329614 GCGTAAGGCGGGCTTTTCA 61.330 57.895 22.38 1.26 41.69 2.69
493 1368 3.631250 GTGGCCTTTTCTTATCCATCCA 58.369 45.455 3.32 0.00 0.00 3.41
496 1371 3.366052 ACGTGGCCTTTTCTTATCCAT 57.634 42.857 3.32 0.00 0.00 3.41
497 1372 2.871096 ACGTGGCCTTTTCTTATCCA 57.129 45.000 3.32 0.00 0.00 3.41
498 1373 7.876582 AGTATTATACGTGGCCTTTTCTTATCC 59.123 37.037 3.32 0.00 0.00 2.59
499 1374 8.828688 AGTATTATACGTGGCCTTTTCTTATC 57.171 34.615 3.32 0.00 0.00 1.75
500 1375 8.648693 AGAGTATTATACGTGGCCTTTTCTTAT 58.351 33.333 3.32 0.00 0.00 1.73
522 1397 0.892358 TTGTCGGCGAGTGGTAGAGT 60.892 55.000 11.20 0.00 0.00 3.24
559 1438 1.675641 CCAACCCAAGGGAGAAGCG 60.676 63.158 13.15 0.00 38.96 4.68
568 1447 1.078426 CTCGCCTACCCAACCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
569 1448 2.598787 CCTCGCCTACCCAACCCAA 61.599 63.158 0.00 0.00 0.00 4.12
639 1518 1.143073 TGGAGACGAGCTAGCTATCCA 59.857 52.381 25.36 25.36 33.11 3.41
666 1575 0.319040 ATGGATCGATTCGGCTCACG 60.319 55.000 6.18 0.00 46.11 4.35
719 1628 2.826128 TGGGCTATGACGATAGATGGAC 59.174 50.000 0.00 0.00 34.44 4.02
722 1631 2.828520 ACCTGGGCTATGACGATAGATG 59.171 50.000 0.00 0.00 34.44 2.90
726 1635 2.156917 CGTACCTGGGCTATGACGATA 58.843 52.381 0.00 0.00 32.20 2.92
729 1638 0.458669 AACGTACCTGGGCTATGACG 59.541 55.000 0.00 0.62 36.42 4.35
730 1639 2.542411 CGTAACGTACCTGGGCTATGAC 60.542 54.545 0.00 0.00 0.00 3.06
731 1640 1.677576 CGTAACGTACCTGGGCTATGA 59.322 52.381 0.00 0.00 0.00 2.15
732 1641 1.406539 ACGTAACGTACCTGGGCTATG 59.593 52.381 0.00 0.00 38.73 2.23
733 1642 1.767759 ACGTAACGTACCTGGGCTAT 58.232 50.000 0.00 0.00 38.73 2.97
734 1643 2.411628 TACGTAACGTACCTGGGCTA 57.588 50.000 0.00 0.00 41.54 3.93
735 1644 3.264574 TACGTAACGTACCTGGGCT 57.735 52.632 0.00 0.00 41.54 5.19
746 1655 6.090088 ACGGATAGACAGATATCGTACGTAAC 59.910 42.308 16.05 6.15 33.69 2.50
747 1656 6.159293 ACGGATAGACAGATATCGTACGTAA 58.841 40.000 16.05 4.92 33.69 3.18
748 1657 5.714047 ACGGATAGACAGATATCGTACGTA 58.286 41.667 16.05 7.55 33.69 3.57
749 1658 4.564041 ACGGATAGACAGATATCGTACGT 58.436 43.478 16.05 5.39 33.69 3.57
750 1659 5.276301 GCTACGGATAGACAGATATCGTACG 60.276 48.000 9.53 9.53 33.69 3.67
751 1660 5.811613 AGCTACGGATAGACAGATATCGTAC 59.188 44.000 0.00 0.00 33.69 3.67
752 1661 5.975282 AGCTACGGATAGACAGATATCGTA 58.025 41.667 0.00 0.00 33.69 3.43
756 1665 7.394641 TGAATGAAGCTACGGATAGACAGATAT 59.605 37.037 0.00 0.00 0.00 1.63
764 1673 3.309388 CGGTGAATGAAGCTACGGATAG 58.691 50.000 0.00 0.00 0.00 2.08
765 1674 2.035449 CCGGTGAATGAAGCTACGGATA 59.965 50.000 0.00 0.00 42.19 2.59
768 1677 0.108329 ACCGGTGAATGAAGCTACGG 60.108 55.000 6.12 0.00 44.86 4.02
840 1749 6.966534 AGTTGAGATGGACAATCACTTTTT 57.033 33.333 0.00 0.00 37.81 1.94
841 1750 6.015940 GGAAGTTGAGATGGACAATCACTTTT 60.016 38.462 0.00 0.00 37.81 2.27
842 1751 5.474876 GGAAGTTGAGATGGACAATCACTTT 59.525 40.000 0.00 0.00 37.81 2.66
843 1752 5.006386 GGAAGTTGAGATGGACAATCACTT 58.994 41.667 0.00 0.00 37.81 3.16
844 1753 4.288105 AGGAAGTTGAGATGGACAATCACT 59.712 41.667 0.00 0.00 37.81 3.41
845 1754 4.583871 AGGAAGTTGAGATGGACAATCAC 58.416 43.478 0.00 0.00 37.81 3.06
846 1755 4.533707 AGAGGAAGTTGAGATGGACAATCA 59.466 41.667 0.00 0.00 37.81 2.57
847 1756 5.096443 AGAGGAAGTTGAGATGGACAATC 57.904 43.478 0.00 0.00 35.29 2.67
848 1757 5.013495 TGAAGAGGAAGTTGAGATGGACAAT 59.987 40.000 0.00 0.00 0.00 2.71
849 1758 4.347876 TGAAGAGGAAGTTGAGATGGACAA 59.652 41.667 0.00 0.00 0.00 3.18
852 1761 3.517100 CCTGAAGAGGAAGTTGAGATGGA 59.483 47.826 0.00 0.00 42.93 3.41
865 1774 4.283212 GGATATCAAGGAGACCTGAAGAGG 59.717 50.000 4.83 0.00 46.21 3.69
870 1779 3.051803 ACAGGGATATCAAGGAGACCTGA 60.052 47.826 21.66 0.00 45.14 3.86
873 1782 3.309296 TGACAGGGATATCAAGGAGACC 58.691 50.000 4.83 0.00 0.00 3.85
874 1783 4.346418 ACATGACAGGGATATCAAGGAGAC 59.654 45.833 4.83 0.00 0.00 3.36
887 1796 0.877071 GTGTGCTTGACATGACAGGG 59.123 55.000 9.14 3.30 36.78 4.45
888 1797 1.596603 TGTGTGCTTGACATGACAGG 58.403 50.000 0.00 0.24 36.78 4.00
891 1800 3.365666 CCAAGATGTGTGCTTGACATGAC 60.366 47.826 0.00 0.00 44.16 3.06
892 1801 2.815503 CCAAGATGTGTGCTTGACATGA 59.184 45.455 0.00 0.00 44.16 3.07
894 1803 3.144657 TCCAAGATGTGTGCTTGACAT 57.855 42.857 0.00 0.00 44.16 3.06
895 1804 2.636647 TCCAAGATGTGTGCTTGACA 57.363 45.000 0.00 0.00 44.16 3.58
896 1805 3.988379 TTTCCAAGATGTGTGCTTGAC 57.012 42.857 0.00 0.00 44.16 3.18
898 1807 3.054878 GCTTTTCCAAGATGTGTGCTTG 58.945 45.455 0.00 0.00 41.77 4.01
901 1810 3.054878 CAAGCTTTTCCAAGATGTGTGC 58.945 45.455 0.00 0.00 30.57 4.57
903 1812 2.694628 TGCAAGCTTTTCCAAGATGTGT 59.305 40.909 0.00 0.00 30.57 3.72
905 1814 3.830755 AGATGCAAGCTTTTCCAAGATGT 59.169 39.130 0.00 0.00 30.57 3.06
906 1815 4.451629 AGATGCAAGCTTTTCCAAGATG 57.548 40.909 0.00 0.00 30.57 2.90
907 1816 4.525487 TGAAGATGCAAGCTTTTCCAAGAT 59.475 37.500 0.00 0.00 41.66 2.40
908 1817 3.890756 TGAAGATGCAAGCTTTTCCAAGA 59.109 39.130 0.00 0.00 41.66 3.02
909 1818 4.247267 TGAAGATGCAAGCTTTTCCAAG 57.753 40.909 0.00 0.00 41.66 3.61
910 1819 4.624015 CTTGAAGATGCAAGCTTTTCCAA 58.376 39.130 0.00 6.08 41.66 3.53
911 1820 4.247267 CTTGAAGATGCAAGCTTTTCCA 57.753 40.909 0.00 0.00 41.66 3.53
920 1829 4.002982 ACGATGTAAGCTTGAAGATGCAA 58.997 39.130 9.86 0.00 0.00 4.08
924 1833 3.599343 TGCACGATGTAAGCTTGAAGAT 58.401 40.909 9.86 0.00 0.00 2.40
925 1834 2.995939 CTGCACGATGTAAGCTTGAAGA 59.004 45.455 9.86 0.00 0.00 2.87
927 1836 2.766313 ACTGCACGATGTAAGCTTGAA 58.234 42.857 9.86 0.00 0.00 2.69
936 1845 2.838736 ACAAGAAGAACTGCACGATGT 58.161 42.857 0.00 0.00 0.00 3.06
946 1859 6.629252 CAGAGAAGCGTTAAAACAAGAAGAAC 59.371 38.462 0.00 0.00 0.00 3.01
964 1877 2.348059 GCGAATGAACTGAGCAGAGAAG 59.652 50.000 4.21 0.00 0.00 2.85
966 1879 1.273327 TGCGAATGAACTGAGCAGAGA 59.727 47.619 4.21 0.00 33.57 3.10
975 1888 2.370281 ATCACGTCTGCGAATGAACT 57.630 45.000 0.00 0.00 42.00 3.01
976 1889 2.762472 CAATCACGTCTGCGAATGAAC 58.238 47.619 0.00 0.00 42.00 3.18
1113 2030 2.847327 TTTGGTGAGCAGGAGAGAAG 57.153 50.000 0.00 0.00 0.00 2.85
1154 2071 5.221843 TGAGCAGATGTAACCTTGTAAACCT 60.222 40.000 0.00 0.00 0.00 3.50
1161 2078 2.983229 AGCTGAGCAGATGTAACCTTG 58.017 47.619 7.39 0.00 0.00 3.61
1175 2115 3.096092 AGGACTGGAGAAACTAGCTGAG 58.904 50.000 0.00 0.00 0.00 3.35
1197 2137 7.313951 AGATTTAGATCAAGCACAACTAAGC 57.686 36.000 0.00 0.00 34.60 3.09
1235 2175 4.563976 GTGGTGTGAATGCTTTTGATATGC 59.436 41.667 0.00 0.00 0.00 3.14
1246 2188 0.030638 GTGTGTGGTGGTGTGAATGC 59.969 55.000 0.00 0.00 0.00 3.56
1247 2189 0.307453 CGTGTGTGGTGGTGTGAATG 59.693 55.000 0.00 0.00 0.00 2.67
1286 2236 8.714179 CGGTGAGAAAATACATTGTTAGTGTTA 58.286 33.333 0.00 0.00 0.00 2.41
1289 2239 7.129109 ACGGTGAGAAAATACATTGTTAGTG 57.871 36.000 0.00 0.00 0.00 2.74
1290 2240 7.548075 CCTACGGTGAGAAAATACATTGTTAGT 59.452 37.037 0.00 0.00 0.00 2.24
1291 2241 7.011109 CCCTACGGTGAGAAAATACATTGTTAG 59.989 40.741 0.00 0.00 0.00 2.34
1372 2323 5.428253 TCTTCCTGGAATTTATTCTCGTGG 58.572 41.667 10.03 0.00 37.00 4.94
1435 6842 1.373590 CGCAATACCCCAGAAACCGG 61.374 60.000 0.00 0.00 0.00 5.28
1680 7087 8.815912 AGCCAGGATTTACATTTTCTTGTTTAT 58.184 29.630 0.00 0.00 0.00 1.40
1748 7155 3.438087 CCCCTGATTATTTGATAGCGCTG 59.562 47.826 22.90 0.00 0.00 5.18
1960 7367 4.884164 GCCTAGCAAACCAAAGATATGTCT 59.116 41.667 0.00 0.00 35.82 3.41
2093 7506 9.865321 TCCATTATTATAACGCCAAGACTATAC 57.135 33.333 0.00 0.00 0.00 1.47
2175 7590 1.156736 ATTCAAGTTGGAGCGAACGG 58.843 50.000 2.34 0.00 0.00 4.44
2180 7595 3.624326 TCAACAATTCAAGTTGGAGCG 57.376 42.857 2.34 0.00 44.84 5.03
2448 8005 5.243207 AGAATGGGTACGTAGGAAAACAAG 58.757 41.667 0.00 0.00 0.00 3.16
2450 8007 4.529377 AGAGAATGGGTACGTAGGAAAACA 59.471 41.667 0.00 0.00 0.00 2.83
2460 8017 6.657966 TGTCCATAGTATAGAGAATGGGTACG 59.342 42.308 0.00 0.00 39.51 3.67
2514 8071 7.291567 GGCTATTTAATTTCAGTCTGCGTATC 58.708 38.462 0.00 0.00 0.00 2.24
2518 8075 4.261197 GGGGCTATTTAATTTCAGTCTGCG 60.261 45.833 0.00 0.00 0.00 5.18
2679 8242 6.377996 TCCAATCGAATCATCCAACTTTGAAT 59.622 34.615 0.00 0.00 0.00 2.57
2848 8411 6.876789 TGAATTTCCAATGCTAGTTTCGTCTA 59.123 34.615 0.00 0.00 0.00 2.59
2869 8432 3.631250 ACCCACGGCTGAAATAATGAAT 58.369 40.909 0.00 0.00 0.00 2.57
2886 8449 1.702957 CTCCCTTGGACAACTTACCCA 59.297 52.381 0.00 0.00 0.00 4.51
3036 8605 3.072476 CCCCGTGATGGTAATTGGTCTAT 59.928 47.826 0.00 0.00 35.15 1.98
3232 8813 1.901591 TGGCTTGAGCTCCTCTTTTG 58.098 50.000 12.15 0.00 41.70 2.44
3260 8841 5.815740 GCCTCTTCCAATCAAATTCGTACTA 59.184 40.000 0.00 0.00 0.00 1.82
3563 9214 1.648467 GACCTTGTGCGGATTCTGCC 61.648 60.000 14.77 6.96 0.00 4.85
3760 9732 0.460284 CTGCACGTACACTGGATCCC 60.460 60.000 9.90 0.00 0.00 3.85
3839 9814 3.008141 GGGCTTCTTCCCGCTAATC 57.992 57.895 0.00 0.00 36.38 1.75
4030 10017 1.176527 CATCGTGGGCCTTTGTTGAT 58.823 50.000 4.53 0.00 0.00 2.57
4031 10018 0.109532 TCATCGTGGGCCTTTGTTGA 59.890 50.000 4.53 2.62 0.00 3.18
4032 10019 0.240945 GTCATCGTGGGCCTTTGTTG 59.759 55.000 4.53 0.10 0.00 3.33
4034 10021 0.606401 CTGTCATCGTGGGCCTTTGT 60.606 55.000 4.53 0.00 0.00 2.83
4303 10298 6.035368 TGCATGCATTTGTTTAGTTACCAT 57.965 33.333 18.46 0.00 0.00 3.55
4311 10306 4.806775 GCTCATGATGCATGCATTTGTTTA 59.193 37.500 32.60 16.29 41.18 2.01
4360 10355 1.523758 CTTGGGTCGTCCTTCCTTTG 58.476 55.000 0.00 0.00 36.20 2.77
4371 10366 1.218316 GGTGGAGTAGCTTGGGTCG 59.782 63.158 0.00 0.00 0.00 4.79
4372 10367 1.481363 GTAGGTGGAGTAGCTTGGGTC 59.519 57.143 0.00 0.00 38.31 4.46
4446 10449 3.626924 ACACCAGGACACCGGAGC 61.627 66.667 9.46 0.00 0.00 4.70
4447 10450 2.343758 CACACCAGGACACCGGAG 59.656 66.667 9.46 1.26 0.00 4.63
4448 10451 3.238497 CCACACCAGGACACCGGA 61.238 66.667 9.46 0.00 0.00 5.14
4452 10455 4.626081 AGCGCCACACCAGGACAC 62.626 66.667 2.29 0.00 0.00 3.67
4453 10456 3.825160 GAAGCGCCACACCAGGACA 62.825 63.158 2.29 0.00 0.00 4.02
4454 10457 3.050275 GAAGCGCCACACCAGGAC 61.050 66.667 2.29 0.00 0.00 3.85
4455 10458 4.680237 CGAAGCGCCACACCAGGA 62.680 66.667 2.29 0.00 0.00 3.86
4456 10459 4.988598 ACGAAGCGCCACACCAGG 62.989 66.667 2.29 0.00 0.00 4.45
4488 10491 5.163754 ACACCGAACTTGAGAAAAACAGAAG 60.164 40.000 0.00 0.00 0.00 2.85
4498 10501 0.391597 GGGACACACCGAACTTGAGA 59.608 55.000 0.00 0.00 40.11 3.27
4499 10502 0.602905 GGGGACACACCGAACTTGAG 60.603 60.000 0.00 0.00 40.11 3.02
4500 10503 1.448497 GGGGACACACCGAACTTGA 59.552 57.895 0.00 0.00 40.11 3.02
4501 10504 1.599797 GGGGGACACACCGAACTTG 60.600 63.158 0.00 0.00 40.11 3.16
4503 10506 2.446994 TGGGGGACACACCGAACT 60.447 61.111 0.00 0.00 40.11 3.01
4519 10522 6.799925 ACGTACAGAGAAAAACAAAACAAGTG 59.200 34.615 0.00 0.00 0.00 3.16
4530 10533 7.271511 TGTTACCCTTTACGTACAGAGAAAAA 58.728 34.615 10.32 0.00 0.00 1.94
4551 10554 5.130311 TCCCTGCTACTCTGCATTTATGTTA 59.870 40.000 0.00 0.00 42.48 2.41
4554 10557 4.077300 TCCCTGCTACTCTGCATTTATG 57.923 45.455 0.00 0.00 42.48 1.90
4582 10585 6.155221 ACCTTCACAGCTAGTCTGATTATTGA 59.845 38.462 17.52 9.50 45.72 2.57
4585 10588 7.661536 TTACCTTCACAGCTAGTCTGATTAT 57.338 36.000 17.52 4.47 45.72 1.28
4602 10605 4.201881 ACACAACAAGCGAAGTTTACCTTC 60.202 41.667 0.00 0.00 45.17 3.46
4603 10606 3.692593 ACACAACAAGCGAAGTTTACCTT 59.307 39.130 0.00 0.00 35.59 3.50
4604 10607 3.275999 ACACAACAAGCGAAGTTTACCT 58.724 40.909 0.00 0.00 0.00 3.08
4605 10608 3.685836 ACACAACAAGCGAAGTTTACC 57.314 42.857 0.00 0.00 0.00 2.85
4606 10609 6.039781 TCTAACACAACAAGCGAAGTTTAC 57.960 37.500 0.00 0.00 0.00 2.01
4607 10610 6.854496 ATCTAACACAACAAGCGAAGTTTA 57.146 33.333 0.00 0.00 0.00 2.01
4608 10611 5.751243 ATCTAACACAACAAGCGAAGTTT 57.249 34.783 0.00 0.00 0.00 2.66
4609 10612 6.854496 TTATCTAACACAACAAGCGAAGTT 57.146 33.333 0.00 0.00 0.00 2.66
4610 10613 6.854496 TTTATCTAACACAACAAGCGAAGT 57.146 33.333 0.00 0.00 0.00 3.01
4611 10614 7.572759 TCTTTTATCTAACACAACAAGCGAAG 58.427 34.615 0.00 0.00 0.00 3.79
4612 10615 7.485418 TCTTTTATCTAACACAACAAGCGAA 57.515 32.000 0.00 0.00 0.00 4.70
4613 10616 7.225931 ACTTCTTTTATCTAACACAACAAGCGA 59.774 33.333 0.00 0.00 0.00 4.93
4614 10617 7.321271 CACTTCTTTTATCTAACACAACAAGCG 59.679 37.037 0.00 0.00 0.00 4.68
4615 10618 7.113544 GCACTTCTTTTATCTAACACAACAAGC 59.886 37.037 0.00 0.00 0.00 4.01
4616 10619 7.591426 GGCACTTCTTTTATCTAACACAACAAG 59.409 37.037 0.00 0.00 0.00 3.16
4617 10620 7.067615 TGGCACTTCTTTTATCTAACACAACAA 59.932 33.333 0.00 0.00 0.00 2.83
4618 10621 6.544197 TGGCACTTCTTTTATCTAACACAACA 59.456 34.615 0.00 0.00 0.00 3.33
4619 10622 6.856426 GTGGCACTTCTTTTATCTAACACAAC 59.144 38.462 11.13 0.00 0.00 3.32
4620 10623 6.544197 TGTGGCACTTCTTTTATCTAACACAA 59.456 34.615 19.83 0.00 31.88 3.33
4639 10664 3.419943 TGCTTTAGATTGATGTGTGGCA 58.580 40.909 0.00 0.00 0.00 4.92
4707 10740 7.625828 AATCCTAAAAATCAAACTCCCTACG 57.374 36.000 0.00 0.00 0.00 3.51
4806 10840 7.815840 TCCAATATGTTTGAGTCACTGAAAA 57.184 32.000 0.00 0.00 0.00 2.29
4859 10895 3.692406 GGTCGGTCGGCAGGAAGT 61.692 66.667 0.00 0.00 0.00 3.01
4881 10917 1.589716 ATGCGACTGGCCAAAGCTTC 61.590 55.000 22.10 7.78 42.61 3.86
4888 10924 2.124612 CATGGATGCGACTGGCCA 60.125 61.111 4.71 4.71 42.61 5.36
5042 11078 8.073768 ACTGTGTTAACATTTTTCTAATCCGTG 58.926 33.333 12.26 0.00 35.22 4.94
5043 11079 8.073768 CACTGTGTTAACATTTTTCTAATCCGT 58.926 33.333 12.26 0.00 35.22 4.69
5044 11080 7.060633 GCACTGTGTTAACATTTTTCTAATCCG 59.939 37.037 12.26 0.00 35.22 4.18
5050 11086 7.386299 TGTTTTGCACTGTGTTAACATTTTTCT 59.614 29.630 12.26 0.00 35.22 2.52
5058 11094 6.401955 ACAATTGTTTTGCACTGTGTTAAC 57.598 33.333 4.92 11.16 0.00 2.01
5064 11100 4.753233 TGCTAACAATTGTTTTGCACTGT 58.247 34.783 30.45 11.54 39.46 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.