Multiple sequence alignment - TraesCS5D01G537000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G537000 chr5D 100.000 3032 0 0 1 3032 549868963 549871994 0.000000e+00 5600.0
1 TraesCS5D01G537000 chr5D 86.667 630 66 11 1750 2361 549864155 549864784 0.000000e+00 682.0
2 TraesCS5D01G537000 chr5D 83.357 691 90 22 957 1637 549863524 549864199 1.540000e-172 616.0
3 TraesCS5D01G537000 chr5D 80.030 656 87 24 991 1614 549876862 549877505 2.140000e-121 446.0
4 TraesCS5D01G537000 chr5D 92.000 100 7 1 1637 1735 549870539 549870638 4.080000e-29 139.0
5 TraesCS5D01G537000 chr5D 92.000 100 7 1 1577 1676 549870599 549870697 4.080000e-29 139.0
6 TraesCS5D01G537000 chr5B 85.150 1697 156 43 1 1640 701521554 701523211 0.000000e+00 1650.0
7 TraesCS5D01G537000 chr5B 90.241 830 58 14 1649 2460 701523779 701524603 0.000000e+00 1062.0
8 TraesCS5D01G537000 chr5B 86.240 625 76 8 968 1584 701512815 701513437 0.000000e+00 669.0
9 TraesCS5D01G537000 chr5B 85.640 578 66 11 1800 2361 701504386 701504962 2.600000e-165 592.0
10 TraesCS5D01G537000 chr5B 81.874 651 80 19 991 1635 701517326 701517944 5.800000e-142 514.0
11 TraesCS5D01G537000 chr5B 90.090 111 8 2 2773 2880 701525495 701525605 1.130000e-29 141.0
12 TraesCS5D01G537000 chr4A 86.581 626 76 6 968 1587 617927559 617926936 0.000000e+00 684.0
13 TraesCS5D01G537000 chr4A 85.895 631 69 13 1750 2361 617937560 617936931 0.000000e+00 654.0
14 TraesCS5D01G537000 chr4A 83.614 653 89 15 995 1640 617938154 617937513 5.600000e-167 597.0
15 TraesCS5D01G537000 chr4A 82.059 680 98 16 979 1640 617912195 617911522 2.640000e-155 558.0
16 TraesCS5D01G537000 chr4A 78.321 655 97 20 991 1617 617904345 617903708 6.130000e-102 381.0
17 TraesCS5D01G537000 chr4A 77.680 681 95 31 27 679 617913210 617912559 2.220000e-96 363.0
18 TraesCS5D01G537000 chr1B 79.213 178 30 4 1867 2039 385159847 385160022 1.910000e-22 117.0
19 TraesCS5D01G537000 chr1B 82.051 78 12 1 1973 2048 650457205 650457282 7.020000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G537000 chr5D 549868963 549871994 3031 False 1959.333333 5600 94.666667 1 3032 3 chr5D.!!$F3 3031
1 TraesCS5D01G537000 chr5D 549863524 549864784 1260 False 649.000000 682 85.012000 957 2361 2 chr5D.!!$F2 1404
2 TraesCS5D01G537000 chr5D 549876862 549877505 643 False 446.000000 446 80.030000 991 1614 1 chr5D.!!$F1 623
3 TraesCS5D01G537000 chr5B 701512815 701525605 12790 False 807.200000 1650 86.719000 1 2880 5 chr5B.!!$F2 2879
4 TraesCS5D01G537000 chr5B 701504386 701504962 576 False 592.000000 592 85.640000 1800 2361 1 chr5B.!!$F1 561
5 TraesCS5D01G537000 chr4A 617926936 617927559 623 True 684.000000 684 86.581000 968 1587 1 chr4A.!!$R2 619
6 TraesCS5D01G537000 chr4A 617936931 617938154 1223 True 625.500000 654 84.754500 995 2361 2 chr4A.!!$R4 1366
7 TraesCS5D01G537000 chr4A 617911522 617913210 1688 True 460.500000 558 79.869500 27 1640 2 chr4A.!!$R3 1613
8 TraesCS5D01G537000 chr4A 617903708 617904345 637 True 381.000000 381 78.321000 991 1617 1 chr4A.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 767 0.107081 AGCTGGATCTGAGCTGATGC 59.893 55.0 16.17 0.0 45.28 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 12906 0.033796 AGGAATCCATGGTGTGCTGG 60.034 55.0 12.58 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.961396 CGTTAGTCTACCATGGCTATAGT 57.039 43.478 13.04 0.46 0.00 2.12
23 24 5.940595 CGTTAGTCTACCATGGCTATAGTC 58.059 45.833 13.04 4.40 0.00 2.59
24 25 5.472478 CGTTAGTCTACCATGGCTATAGTCA 59.528 44.000 13.04 9.96 0.00 3.41
25 26 6.151312 CGTTAGTCTACCATGGCTATAGTCAT 59.849 42.308 14.20 14.20 41.75 3.06
57 58 3.503363 GCTAGCTGCCACCGCAAG 61.503 66.667 7.70 0.00 46.66 4.01
102 106 8.060075 ACTACTAGTACCACTCCACATAGAAAT 58.940 37.037 0.00 0.00 0.00 2.17
108 112 6.313519 ACCACTCCACATAGAAATACATGT 57.686 37.500 2.69 2.69 35.79 3.21
121 125 9.892130 ATAGAAATACATGTAATTAGCTAGGCC 57.108 33.333 10.14 0.00 0.00 5.19
122 126 7.978925 AGAAATACATGTAATTAGCTAGGCCT 58.021 34.615 11.78 11.78 0.00 5.19
169 175 2.520741 AGGAGGCTAGCTCGCTCC 60.521 66.667 23.69 23.69 34.61 4.70
174 180 2.561037 GGCTAGCTCGCTCCTCCTC 61.561 68.421 15.72 0.00 0.00 3.71
200 223 2.571653 TGACTTCCATCCATCGACCTTT 59.428 45.455 0.00 0.00 0.00 3.11
201 224 2.939103 GACTTCCATCCATCGACCTTTG 59.061 50.000 0.00 0.00 0.00 2.77
202 225 1.672881 CTTCCATCCATCGACCTTTGC 59.327 52.381 0.00 0.00 0.00 3.68
203 226 0.107214 TCCATCCATCGACCTTTGCC 60.107 55.000 0.00 0.00 0.00 4.52
206 229 2.257409 ATCCATCGACCTTTGCCGCT 62.257 55.000 0.00 0.00 0.00 5.52
208 231 3.127533 ATCGACCTTTGCCGCTGC 61.128 61.111 0.00 0.00 38.26 5.25
219 242 3.624300 CCGCTGCGAGCAAGATCG 61.624 66.667 25.45 3.01 42.58 3.69
226 249 2.543012 CTGCGAGCAAGATCGATTTCAT 59.457 45.455 12.28 0.00 45.56 2.57
227 250 3.716601 TGCGAGCAAGATCGATTTCATA 58.283 40.909 12.28 0.00 45.56 2.15
233 256 5.352284 AGCAAGATCGATTTCATAACTCGT 58.648 37.500 0.00 0.00 34.19 4.18
237 260 8.276325 GCAAGATCGATTTCATAACTCGTAAAT 58.724 33.333 0.00 0.00 34.19 1.40
241 264 8.758633 ATCGATTTCATAACTCGTAAATAGGG 57.241 34.615 0.00 0.00 34.19 3.53
244 267 7.866393 CGATTTCATAACTCGTAAATAGGGACT 59.134 37.037 0.00 0.00 46.37 3.85
248 271 4.546829 AACTCGTAAATAGGGACTTGCA 57.453 40.909 0.00 0.00 41.75 4.08
261 284 2.094854 GGACTTGCAGAGGATTGCTTTG 60.095 50.000 0.00 0.00 44.38 2.77
262 285 1.891150 ACTTGCAGAGGATTGCTTTGG 59.109 47.619 0.00 0.00 44.38 3.28
274 297 2.132740 TGCTTTGGCAAAACATCGAC 57.867 45.000 14.43 0.00 46.36 4.20
279 302 1.083489 TGGCAAAACATCGACCGATC 58.917 50.000 1.46 0.00 31.62 3.69
290 313 1.351707 GACCGATCGCCGTACGTAA 59.648 57.895 15.21 0.00 44.19 3.18
300 323 2.735126 CGCCGTACGTAACCAAGGTATT 60.735 50.000 15.21 0.00 36.87 1.89
336 359 7.553881 TTGTAGCTTATTAATCTGGTTCTGC 57.446 36.000 0.00 0.00 0.00 4.26
337 360 6.889198 TGTAGCTTATTAATCTGGTTCTGCT 58.111 36.000 0.00 0.00 0.00 4.24
338 361 8.018537 TGTAGCTTATTAATCTGGTTCTGCTA 57.981 34.615 0.00 0.00 0.00 3.49
339 362 8.144478 TGTAGCTTATTAATCTGGTTCTGCTAG 58.856 37.037 0.00 0.00 31.31 3.42
354 378 6.019156 GGTTCTGCTAGATCTGATTTTCTTCG 60.019 42.308 5.18 0.00 0.00 3.79
356 380 4.697514 TGCTAGATCTGATTTTCTTCGGG 58.302 43.478 5.18 0.00 0.00 5.14
358 382 4.509600 GCTAGATCTGATTTTCTTCGGGTG 59.490 45.833 5.18 0.00 0.00 4.61
375 399 0.759060 GTGGAAGGCACCCAGGTTTT 60.759 55.000 0.00 0.00 33.75 2.43
376 400 0.469144 TGGAAGGCACCCAGGTTTTC 60.469 55.000 0.00 0.00 0.00 2.29
377 401 1.185618 GGAAGGCACCCAGGTTTTCC 61.186 60.000 8.13 8.13 41.05 3.13
378 402 0.469144 GAAGGCACCCAGGTTTTCCA 60.469 55.000 0.00 0.00 43.73 3.53
379 403 0.190815 AAGGCACCCAGGTTTTCCAT 59.809 50.000 0.00 0.00 43.73 3.41
380 404 0.190815 AGGCACCCAGGTTTTCCATT 59.809 50.000 0.00 0.00 43.73 3.16
381 405 1.431243 AGGCACCCAGGTTTTCCATTA 59.569 47.619 0.00 0.00 43.73 1.90
382 406 2.044353 AGGCACCCAGGTTTTCCATTAT 59.956 45.455 0.00 0.00 43.73 1.28
383 407 2.430694 GGCACCCAGGTTTTCCATTATC 59.569 50.000 0.00 0.00 43.73 1.75
384 408 3.096092 GCACCCAGGTTTTCCATTATCA 58.904 45.455 0.00 0.00 43.73 2.15
385 409 3.706086 GCACCCAGGTTTTCCATTATCAT 59.294 43.478 0.00 0.00 43.73 2.45
386 410 4.441913 GCACCCAGGTTTTCCATTATCATG 60.442 45.833 0.00 0.00 43.73 3.07
387 411 3.706086 ACCCAGGTTTTCCATTATCATGC 59.294 43.478 0.00 0.00 43.73 4.06
388 412 3.962718 CCCAGGTTTTCCATTATCATGCT 59.037 43.478 0.00 0.00 43.73 3.79
389 413 4.038402 CCCAGGTTTTCCATTATCATGCTC 59.962 45.833 0.00 0.00 43.73 4.26
390 414 4.038402 CCAGGTTTTCCATTATCATGCTCC 59.962 45.833 0.00 0.00 43.73 4.70
391 415 4.038402 CAGGTTTTCCATTATCATGCTCCC 59.962 45.833 0.00 0.00 43.73 4.30
392 416 3.960102 GGTTTTCCATTATCATGCTCCCA 59.040 43.478 0.00 0.00 40.31 4.37
393 417 4.590222 GGTTTTCCATTATCATGCTCCCAT 59.410 41.667 0.00 0.00 40.31 4.00
394 418 5.510179 GGTTTTCCATTATCATGCTCCCATG 60.510 44.000 0.00 0.00 43.68 3.66
395 419 7.869417 GGTTTTCCATTATCATGCTCCCATGT 61.869 42.308 3.88 0.00 43.27 3.21
396 420 9.258336 GGTTTTCCATTATCATGCTCCCATGTT 62.258 40.741 3.88 0.00 43.27 2.71
403 427 3.344904 CATGCTCCCATGTTTCGATTC 57.655 47.619 0.00 0.00 43.07 2.52
415 439 7.649306 CCCATGTTTCGATTCCATCTTAATTTC 59.351 37.037 0.00 0.00 0.00 2.17
421 445 6.216569 TCGATTCCATCTTAATTTCCTCTCG 58.783 40.000 0.00 0.00 0.00 4.04
426 450 6.574350 TCCATCTTAATTTCCTCTCGAAGTC 58.426 40.000 0.00 0.00 0.00 3.01
427 451 5.755861 CCATCTTAATTTCCTCTCGAAGTCC 59.244 44.000 0.00 0.00 0.00 3.85
437 461 3.275143 CTCTCGAAGTCCTCTTGCTAGA 58.725 50.000 0.00 0.00 33.64 2.43
464 495 6.265196 AGCAACTAATTTCCTTGTCATGTCAA 59.735 34.615 5.28 5.28 0.00 3.18
465 496 7.039504 AGCAACTAATTTCCTTGTCATGTCAAT 60.040 33.333 5.84 0.00 0.00 2.57
468 499 7.820648 ACTAATTTCCTTGTCATGTCAATCAC 58.179 34.615 5.84 0.00 0.00 3.06
469 500 4.747540 TTTCCTTGTCATGTCAATCACG 57.252 40.909 5.84 0.00 0.00 4.35
522 553 4.512484 AGCTTACATCTTCAAGCCTCTTC 58.488 43.478 2.86 0.00 46.70 2.87
523 554 4.019860 AGCTTACATCTTCAAGCCTCTTCA 60.020 41.667 2.86 0.00 46.70 3.02
525 556 5.220815 GCTTACATCTTCAAGCCTCTTCATG 60.221 44.000 0.00 0.00 41.04 3.07
533 565 4.326826 TCAAGCCTCTTCATGTTTGGTAG 58.673 43.478 0.00 0.00 0.00 3.18
538 570 4.003648 CCTCTTCATGTTTGGTAGACACC 58.996 47.826 0.00 0.00 46.00 4.16
554 586 3.057734 GACACCGAGTCAAAGTAACTGG 58.942 50.000 3.51 0.00 46.77 4.00
594 629 8.812513 AATTAATTGTCCTGATCACATCTTCA 57.187 30.769 0.00 0.00 0.00 3.02
595 630 7.854557 TTAATTGTCCTGATCACATCTTCAG 57.145 36.000 0.00 0.00 39.25 3.02
600 635 4.340666 GTCCTGATCACATCTTCAGCTCTA 59.659 45.833 0.00 0.00 38.41 2.43
607 642 5.658468 TCACATCTTCAGCTCTATGAACAG 58.342 41.667 0.00 0.00 35.40 3.16
613 648 3.036819 TCAGCTCTATGAACAGGCAGAT 58.963 45.455 0.00 0.00 0.00 2.90
617 652 5.466058 CAGCTCTATGAACAGGCAGATAAAG 59.534 44.000 0.00 0.00 0.00 1.85
618 653 5.365025 AGCTCTATGAACAGGCAGATAAAGA 59.635 40.000 0.00 0.00 0.00 2.52
624 659 6.899393 TGAACAGGCAGATAAAGAAACAAT 57.101 33.333 0.00 0.00 0.00 2.71
666 701 4.156008 ACCCTTTAATTTCGACAGCACATC 59.844 41.667 0.00 0.00 0.00 3.06
671 706 7.693951 CCTTTAATTTCGACAGCACATCTAAAG 59.306 37.037 0.00 0.00 0.00 1.85
677 712 7.468922 TTCGACAGCACATCTAAAGAATATG 57.531 36.000 0.00 0.00 0.00 1.78
678 713 6.573434 TCGACAGCACATCTAAAGAATATGT 58.427 36.000 0.00 0.00 34.22 2.29
679 714 7.041721 TCGACAGCACATCTAAAGAATATGTT 58.958 34.615 0.00 0.00 31.60 2.71
680 715 7.549134 TCGACAGCACATCTAAAGAATATGTTT 59.451 33.333 0.00 0.00 31.60 2.83
681 716 7.848051 CGACAGCACATCTAAAGAATATGTTTC 59.152 37.037 0.00 0.00 31.60 2.78
682 717 7.989826 ACAGCACATCTAAAGAATATGTTTCC 58.010 34.615 0.00 0.00 31.60 3.13
683 718 7.611467 ACAGCACATCTAAAGAATATGTTTCCA 59.389 33.333 0.00 0.00 31.60 3.53
684 719 7.912250 CAGCACATCTAAAGAATATGTTTCCAC 59.088 37.037 0.00 0.00 31.60 4.02
685 720 7.067494 AGCACATCTAAAGAATATGTTTCCACC 59.933 37.037 0.00 0.00 31.60 4.61
686 721 7.067494 GCACATCTAAAGAATATGTTTCCACCT 59.933 37.037 0.00 0.00 31.60 4.00
687 722 9.613428 CACATCTAAAGAATATGTTTCCACCTA 57.387 33.333 0.00 0.00 31.60 3.08
701 736 5.428496 TTCCACCTAGTATTATGTCGACG 57.572 43.478 11.62 0.00 0.00 5.12
703 738 4.512944 TCCACCTAGTATTATGTCGACGAC 59.487 45.833 20.97 20.97 0.00 4.34
705 740 3.496130 ACCTAGTATTATGTCGACGACCG 59.504 47.826 24.33 0.00 40.25 4.79
711 746 1.371337 TATGTCGACGACCGGTGGAG 61.371 60.000 24.54 15.96 33.76 3.86
721 756 1.144936 CCGGTGGAGAAGCTGGATC 59.855 63.158 0.00 0.00 0.00 3.36
722 757 1.333636 CCGGTGGAGAAGCTGGATCT 61.334 60.000 0.00 0.00 0.00 2.75
723 758 0.179089 CGGTGGAGAAGCTGGATCTG 60.179 60.000 0.00 0.00 0.00 2.90
724 759 1.198713 GGTGGAGAAGCTGGATCTGA 58.801 55.000 0.00 0.00 0.00 3.27
726 761 0.829333 TGGAGAAGCTGGATCTGAGC 59.171 55.000 8.70 8.70 36.65 4.26
728 763 1.202557 GGAGAAGCTGGATCTGAGCTG 60.203 57.143 17.23 0.00 46.32 4.24
730 765 2.366266 GAGAAGCTGGATCTGAGCTGAT 59.634 50.000 17.23 10.74 46.32 2.90
731 766 2.103432 AGAAGCTGGATCTGAGCTGATG 59.897 50.000 17.23 0.00 46.32 3.07
732 767 0.107081 AGCTGGATCTGAGCTGATGC 59.893 55.000 16.17 0.00 45.28 3.91
733 768 0.885596 GCTGGATCTGAGCTGATGCC 60.886 60.000 0.00 0.00 40.80 4.40
734 769 0.250381 CTGGATCTGAGCTGATGCCC 60.250 60.000 0.00 0.00 40.80 5.36
749 817 0.252881 TGCCCAGAACCAGAGGAGAT 60.253 55.000 0.00 0.00 0.00 2.75
752 820 2.406559 CCCAGAACCAGAGGAGATCAT 58.593 52.381 0.00 0.00 0.00 2.45
755 823 3.199508 CCAGAACCAGAGGAGATCATGTT 59.800 47.826 0.00 0.00 0.00 2.71
758 826 5.362143 CAGAACCAGAGGAGATCATGTTAGA 59.638 44.000 0.00 0.00 0.00 2.10
759 827 6.041865 CAGAACCAGAGGAGATCATGTTAGAT 59.958 42.308 0.00 0.00 0.00 1.98
765 833 6.700960 CAGAGGAGATCATGTTAGATGTGTTC 59.299 42.308 0.00 0.00 0.00 3.18
766 834 6.382282 AGAGGAGATCATGTTAGATGTGTTCA 59.618 38.462 0.00 0.00 0.00 3.18
771 839 7.268586 AGATCATGTTAGATGTGTTCAGTACC 58.731 38.462 0.00 0.00 0.00 3.34
773 841 4.859304 TGTTAGATGTGTTCAGTACCGT 57.141 40.909 0.00 0.00 0.00 4.83
774 842 5.963176 TGTTAGATGTGTTCAGTACCGTA 57.037 39.130 0.00 0.00 0.00 4.02
775 843 6.330004 TGTTAGATGTGTTCAGTACCGTAA 57.670 37.500 0.00 0.00 0.00 3.18
780 848 3.719924 TGTGTTCAGTACCGTAAACCAG 58.280 45.455 0.00 0.00 0.00 4.00
786 858 3.119245 TCAGTACCGTAAACCAGAGATGC 60.119 47.826 0.00 0.00 0.00 3.91
787 859 3.097614 AGTACCGTAAACCAGAGATGCT 58.902 45.455 0.00 0.00 0.00 3.79
789 861 1.207329 ACCGTAAACCAGAGATGCTCC 59.793 52.381 0.00 0.00 0.00 4.70
793 865 3.617531 CGTAAACCAGAGATGCTCCTTGT 60.618 47.826 0.00 0.00 0.00 3.16
795 867 2.486472 ACCAGAGATGCTCCTTGTTG 57.514 50.000 0.00 0.00 0.00 3.33
796 868 1.004044 ACCAGAGATGCTCCTTGTTGG 59.996 52.381 0.00 0.00 37.10 3.77
797 869 1.280133 CCAGAGATGCTCCTTGTTGGA 59.720 52.381 0.00 0.00 43.86 3.53
806 878 3.960102 TGCTCCTTGTTGGAAAACTTGAT 59.040 39.130 0.00 0.00 45.63 2.57
812 884 2.364970 TGTTGGAAAACTTGATGCCTGG 59.635 45.455 0.00 0.00 0.00 4.45
814 886 2.238521 TGGAAAACTTGATGCCTGGAC 58.761 47.619 0.00 0.00 0.00 4.02
819 891 3.719268 AACTTGATGCCTGGACATACA 57.281 42.857 0.00 0.00 0.00 2.29
820 892 3.939740 ACTTGATGCCTGGACATACAT 57.060 42.857 0.00 0.00 0.00 2.29
821 893 4.240881 ACTTGATGCCTGGACATACATT 57.759 40.909 0.00 0.00 0.00 2.71
822 894 4.603131 ACTTGATGCCTGGACATACATTT 58.397 39.130 0.00 0.00 0.00 2.32
824 896 5.824624 ACTTGATGCCTGGACATACATTTAG 59.175 40.000 0.00 0.00 0.00 1.85
826 898 5.368145 TGATGCCTGGACATACATTTAGAC 58.632 41.667 0.00 0.00 0.00 2.59
828 900 5.172687 TGCCTGGACATACATTTAGACAA 57.827 39.130 0.00 0.00 0.00 3.18
829 901 5.565509 TGCCTGGACATACATTTAGACAAA 58.434 37.500 0.00 0.00 0.00 2.83
830 902 5.414454 TGCCTGGACATACATTTAGACAAAC 59.586 40.000 0.00 0.00 0.00 2.93
832 904 6.095440 GCCTGGACATACATTTAGACAAACAT 59.905 38.462 0.00 0.00 0.00 2.71
833 905 7.475015 CCTGGACATACATTTAGACAAACATG 58.525 38.462 0.00 0.00 0.00 3.21
834 906 7.389803 TGGACATACATTTAGACAAACATGG 57.610 36.000 0.00 0.00 0.00 3.66
837 909 7.552687 GGACATACATTTAGACAAACATGGAGA 59.447 37.037 0.00 0.00 0.00 3.71
838 910 8.498054 ACATACATTTAGACAAACATGGAGAG 57.502 34.615 0.00 0.00 0.00 3.20
843 921 3.864789 AGACAAACATGGAGAGTTGGT 57.135 42.857 0.00 0.00 35.89 3.67
851 929 7.942341 ACAAACATGGAGAGTTGGTTAATTCTA 59.058 33.333 0.00 0.00 33.56 2.10
852 930 7.923414 AACATGGAGAGTTGGTTAATTCTAC 57.077 36.000 0.00 0.00 33.56 2.59
854 932 5.080969 TGGAGAGTTGGTTAATTCTACCG 57.919 43.478 5.48 0.00 38.55 4.02
857 935 4.504858 AGAGTTGGTTAATTCTACCGCTG 58.495 43.478 9.64 0.00 38.55 5.18
860 938 1.306148 GGTTAATTCTACCGCTGCCC 58.694 55.000 0.00 0.00 0.00 5.36
861 939 1.134189 GGTTAATTCTACCGCTGCCCT 60.134 52.381 0.00 0.00 0.00 5.19
864 942 0.618458 AATTCTACCGCTGCCCTTGA 59.382 50.000 0.00 0.00 0.00 3.02
878 960 2.557920 CCTTGATGCAGGGGATCTAC 57.442 55.000 0.00 0.00 0.00 2.59
884 966 4.492646 TGATGCAGGGGATCTACATTCTA 58.507 43.478 0.00 0.00 29.94 2.10
890 972 7.397221 TGCAGGGGATCTACATTCTATAATTG 58.603 38.462 0.00 0.00 0.00 2.32
894 976 8.606830 AGGGGATCTACATTCTATAATTGTTCC 58.393 37.037 0.00 0.00 0.00 3.62
941 1023 0.889306 CGTATAGGGGCTAGCCTCAC 59.111 60.000 34.97 22.81 39.60 3.51
943 1025 2.326428 GTATAGGGGCTAGCCTCACAA 58.674 52.381 34.97 20.12 39.60 3.33
944 1026 2.124560 ATAGGGGCTAGCCTCACAAT 57.875 50.000 34.97 21.43 39.60 2.71
945 1027 2.787339 TAGGGGCTAGCCTCACAATA 57.213 50.000 34.97 16.13 39.60 1.90
946 1028 1.893315 AGGGGCTAGCCTCACAATAA 58.107 50.000 34.97 0.00 39.60 1.40
947 1029 2.205342 AGGGGCTAGCCTCACAATAAA 58.795 47.619 34.97 0.00 39.60 1.40
948 1030 2.580783 AGGGGCTAGCCTCACAATAAAA 59.419 45.455 34.97 0.00 39.60 1.52
950 1032 4.415512 AGGGGCTAGCCTCACAATAAAATA 59.584 41.667 34.97 0.00 39.60 1.40
951 1033 5.103686 AGGGGCTAGCCTCACAATAAAATAA 60.104 40.000 34.97 0.00 39.60 1.40
952 1034 5.596772 GGGGCTAGCCTCACAATAAAATAAA 59.403 40.000 32.18 0.00 36.36 1.40
953 1035 6.267699 GGGGCTAGCCTCACAATAAAATAAAT 59.732 38.462 32.18 0.00 36.36 1.40
954 1036 7.450323 GGGGCTAGCCTCACAATAAAATAAATA 59.550 37.037 32.18 0.00 36.36 1.40
955 1037 8.297426 GGGCTAGCCTCACAATAAAATAAATAC 58.703 37.037 32.18 5.64 36.10 1.89
956 1038 8.846211 GGCTAGCCTCACAATAAAATAAATACA 58.154 33.333 27.17 0.00 0.00 2.29
960 1042 9.533253 AGCCTCACAATAAAATAAATACATTGC 57.467 29.630 0.00 0.00 31.28 3.56
961 1043 9.533253 GCCTCACAATAAAATAAATACATTGCT 57.467 29.630 0.00 0.00 31.28 3.91
971 1053 4.789012 AAATACATTGCTCAAGGGTGTG 57.211 40.909 0.00 0.00 0.00 3.82
982 1064 4.634199 CTCAAGGGTGTGCATTTCATTTT 58.366 39.130 0.00 0.00 0.00 1.82
1033 1148 1.665161 CCTGTACAAGTCACGTCGACC 60.665 57.143 10.58 0.00 46.69 4.79
1083 10911 2.116125 GAGCCCACAAACCTGCCT 59.884 61.111 0.00 0.00 0.00 4.75
1092 10920 3.191371 CCACAAACCTGCCTTTATCACTC 59.809 47.826 0.00 0.00 0.00 3.51
1140 10968 3.333029 TCTGATCACGAAATTGGCAGA 57.667 42.857 0.00 0.00 0.00 4.26
1183 11014 4.380843 AAGGTACCACACAAATGGATCA 57.619 40.909 15.94 0.00 43.02 2.92
1188 11019 2.749076 ACCACACAAATGGATCACATCG 59.251 45.455 0.00 0.00 43.02 3.84
1227 11072 6.649155 TCCCAATCATAGTCGATCTGAAAAA 58.351 36.000 0.00 0.00 0.00 1.94
1292 11167 8.795786 TGAGTCTTGTTAACAATGTATTTTGC 57.204 30.769 20.83 5.54 35.02 3.68
1360 11235 1.066908 ACCAACACATTTGCTGTTCCG 59.933 47.619 0.00 0.00 35.29 4.30
1365 11240 2.086869 CACATTTGCTGTTCCGGAGAT 58.913 47.619 3.34 0.00 35.29 2.75
1383 11258 5.049129 CGGAGATTAAATTCCATGAAGAGGC 60.049 44.000 0.00 0.00 32.87 4.70
1390 11265 9.652114 ATTAAATTCCATGAAGAGGCTAGAAAT 57.348 29.630 0.00 0.00 0.00 2.17
1465 11340 3.383185 ACACGCAAGGAAAAATGGAAGAA 59.617 39.130 0.00 0.00 46.39 2.52
1622 11500 7.693952 AGGTTATTAAAACACATAGCATGTCG 58.306 34.615 0.00 0.29 42.70 4.35
1731 12168 9.453325 TTGCTCTTTTAAAGGTTATTAAACACG 57.547 29.630 4.77 0.00 35.19 4.49
1779 12221 8.704849 AAGGTTATTAAATACATAGCATGGCA 57.295 30.769 0.00 0.00 33.60 4.92
1834 12276 5.560724 ACATGACATTATAGCCATGTACCC 58.439 41.667 0.00 0.00 45.21 3.69
1840 12282 7.563188 TGACATTATAGCCATGTACCCAAATTT 59.437 33.333 0.00 0.00 34.89 1.82
1850 12292 8.474831 GCCATGTACCCAAATTTAGTAAGAAAT 58.525 33.333 0.00 0.00 0.00 2.17
1876 12318 0.835971 TCCCAGCTGCTCCTTGTGTA 60.836 55.000 8.66 0.00 0.00 2.90
1905 12347 4.518970 GCAACTTGTGGACTTAATTGGAGA 59.481 41.667 0.00 0.00 0.00 3.71
1941 12383 2.936032 AGGGGGTTGTCTGAGGGC 60.936 66.667 0.00 0.00 0.00 5.19
1950 12392 3.502595 GGTTGTCTGAGGGCTTAGTTTTC 59.497 47.826 0.00 0.00 0.00 2.29
2015 12459 9.314133 AGCTAATATACTTAGATGGTCACATGA 57.686 33.333 0.00 0.00 37.47 3.07
2147 12596 9.167311 CTCTTAGTTTGTTAGGCATGACTTTAT 57.833 33.333 6.27 0.00 0.00 1.40
2171 12629 3.355378 TCATCGTTGATTGGGCTTCATT 58.645 40.909 0.00 0.00 0.00 2.57
2215 12675 4.518590 ACTGATCCAGAGTACATCAGATCG 59.481 45.833 20.92 12.85 44.35 3.69
2220 12680 1.133325 AGAGTACATCAGATCGGGCCT 60.133 52.381 0.84 0.00 0.00 5.19
2290 12750 2.238084 TACTGACAGGAGTGAGGCAT 57.762 50.000 7.51 0.00 32.81 4.40
2291 12751 2.238084 ACTGACAGGAGTGAGGCATA 57.762 50.000 7.51 0.00 32.81 3.14
2431 12897 6.976934 AAAATATCTATTGCCACGGGAAAT 57.023 33.333 0.00 0.00 34.81 2.17
2440 12906 1.724582 CCACGGGAAATTGATCCGCC 61.725 60.000 12.41 0.00 46.87 6.13
2447 12913 0.611618 AAATTGATCCGCCCAGCACA 60.612 50.000 0.00 0.00 0.00 4.57
2448 12914 1.315257 AATTGATCCGCCCAGCACAC 61.315 55.000 0.00 0.00 0.00 3.82
2449 12915 3.918253 TTGATCCGCCCAGCACACC 62.918 63.158 0.00 0.00 0.00 4.16
2450 12916 4.408821 GATCCGCCCAGCACACCA 62.409 66.667 0.00 0.00 0.00 4.17
2451 12917 3.704231 GATCCGCCCAGCACACCAT 62.704 63.158 0.00 0.00 0.00 3.55
2452 12918 4.720902 TCCGCCCAGCACACCATG 62.721 66.667 0.00 0.00 0.00 3.66
2454 12920 4.720902 CGCCCAGCACACCATGGA 62.721 66.667 21.47 0.00 39.02 3.41
2455 12921 2.043652 GCCCAGCACACCATGGAT 60.044 61.111 21.47 2.53 39.02 3.41
2456 12922 1.683365 GCCCAGCACACCATGGATT 60.683 57.895 21.47 0.49 39.02 3.01
2457 12923 1.669999 GCCCAGCACACCATGGATTC 61.670 60.000 21.47 4.33 39.02 2.52
2459 12925 0.033796 CCAGCACACCATGGATTCCT 60.034 55.000 21.47 6.33 39.02 3.36
2460 12926 1.617804 CCAGCACACCATGGATTCCTT 60.618 52.381 21.47 0.00 39.02 3.36
2461 12927 1.475280 CAGCACACCATGGATTCCTTG 59.525 52.381 21.47 7.57 0.00 3.61
2462 12928 0.174162 GCACACCATGGATTCCTTGC 59.826 55.000 21.47 12.75 0.00 4.01
2464 12930 2.173519 CACACCATGGATTCCTTGCTT 58.826 47.619 21.47 0.00 0.00 3.91
2465 12931 2.564062 CACACCATGGATTCCTTGCTTT 59.436 45.455 21.47 0.00 0.00 3.51
2468 12934 3.007182 CACCATGGATTCCTTGCTTTTGT 59.993 43.478 21.47 3.16 0.00 2.83
2469 12935 3.007182 ACCATGGATTCCTTGCTTTTGTG 59.993 43.478 21.47 1.42 0.00 3.33
2479 13348 4.898861 TCCTTGCTTTTGTGGAGGTAAATT 59.101 37.500 0.00 0.00 0.00 1.82
2480 13349 4.990426 CCTTGCTTTTGTGGAGGTAAATTG 59.010 41.667 0.00 0.00 0.00 2.32
2489 13358 9.844257 TTTTGTGGAGGTAAATTGATCATTTTT 57.156 25.926 17.97 13.11 36.43 1.94
2490 13359 9.487790 TTTGTGGAGGTAAATTGATCATTTTTC 57.512 29.630 17.97 13.65 36.43 2.29
2491 13360 8.187913 TGTGGAGGTAAATTGATCATTTTTCA 57.812 30.769 17.97 8.72 36.43 2.69
2515 13384 3.321396 TGCAAAATGACAAAGATGAGCCA 59.679 39.130 0.00 0.00 0.00 4.75
2518 13387 5.410439 GCAAAATGACAAAGATGAGCCAAAT 59.590 36.000 0.00 0.00 0.00 2.32
2523 13392 4.943705 TGACAAAGATGAGCCAAATCCTAC 59.056 41.667 0.00 0.00 0.00 3.18
2552 13426 3.107601 AGGGCTAGCAGAATCTACAACA 58.892 45.455 18.24 0.00 0.00 3.33
2559 13433 4.446371 AGCAGAATCTACAACATAGGTGC 58.554 43.478 0.00 0.00 0.00 5.01
2593 13468 5.422666 AAAAGGTAACGGGAAAAGTAACG 57.577 39.130 0.00 0.00 46.39 3.18
2598 13473 4.388773 GGTAACGGGAAAAGTAACGTAAGG 59.611 45.833 0.00 0.00 46.39 2.69
2607 13482 7.857389 GGGAAAAGTAACGTAAGGTTGTAAAAG 59.143 37.037 0.00 0.00 46.39 2.27
2611 13486 3.110447 ACGTAAGGTTGTAAAAGGCGA 57.890 42.857 0.00 0.00 46.39 5.54
2618 13493 3.140623 GGTTGTAAAAGGCGACCAAGTA 58.859 45.455 0.00 0.00 39.59 2.24
2619 13494 3.058708 GGTTGTAAAAGGCGACCAAGTAC 60.059 47.826 0.00 0.00 39.59 2.73
2620 13495 2.769893 TGTAAAAGGCGACCAAGTACC 58.230 47.619 0.00 0.00 0.00 3.34
2621 13496 2.079158 GTAAAAGGCGACCAAGTACCC 58.921 52.381 0.00 0.00 0.00 3.69
2622 13497 0.604511 AAAAGGCGACCAAGTACCCG 60.605 55.000 0.00 0.00 0.00 5.28
2623 13498 2.459202 AAAGGCGACCAAGTACCCGG 62.459 60.000 0.00 0.00 0.00 5.73
2625 13500 4.382320 GCGACCAAGTACCCGGCA 62.382 66.667 0.00 0.00 0.00 5.69
2626 13501 2.582436 CGACCAAGTACCCGGCAT 59.418 61.111 0.00 0.00 0.00 4.40
2669 13544 5.296780 TCGGAATATGACTCCTTTTTCATGC 59.703 40.000 0.00 0.00 34.28 4.06
2670 13545 5.506317 CGGAATATGACTCCTTTTTCATGCC 60.506 44.000 0.00 0.00 34.28 4.40
2671 13546 5.505173 AATATGACTCCTTTTTCATGCCG 57.495 39.130 0.00 0.00 34.28 5.69
2672 13547 2.270352 TGACTCCTTTTTCATGCCGT 57.730 45.000 0.00 0.00 0.00 5.68
2673 13548 3.410631 TGACTCCTTTTTCATGCCGTA 57.589 42.857 0.00 0.00 0.00 4.02
2675 13550 3.751175 TGACTCCTTTTTCATGCCGTAAG 59.249 43.478 0.00 0.00 0.00 2.34
2676 13551 2.488153 ACTCCTTTTTCATGCCGTAAGC 59.512 45.455 0.00 0.00 44.14 3.09
2677 13552 2.749621 CTCCTTTTTCATGCCGTAAGCT 59.250 45.455 0.00 0.00 44.23 3.74
2678 13553 3.938963 CTCCTTTTTCATGCCGTAAGCTA 59.061 43.478 0.00 0.00 44.23 3.32
2679 13554 3.938963 TCCTTTTTCATGCCGTAAGCTAG 59.061 43.478 0.00 0.00 44.23 3.42
2680 13555 3.689649 CCTTTTTCATGCCGTAAGCTAGT 59.310 43.478 0.00 0.00 44.23 2.57
2681 13556 4.201822 CCTTTTTCATGCCGTAAGCTAGTC 60.202 45.833 0.00 0.00 44.23 2.59
2682 13557 3.887621 TTTCATGCCGTAAGCTAGTCT 57.112 42.857 0.00 0.00 44.23 3.24
2683 13558 3.887621 TTCATGCCGTAAGCTAGTCTT 57.112 42.857 0.00 5.06 44.23 3.01
2685 13560 3.521560 TCATGCCGTAAGCTAGTCTTTG 58.478 45.455 5.02 0.00 44.23 2.77
2686 13561 3.056107 TCATGCCGTAAGCTAGTCTTTGT 60.056 43.478 5.02 0.00 44.23 2.83
2687 13562 4.158949 TCATGCCGTAAGCTAGTCTTTGTA 59.841 41.667 5.02 0.00 44.23 2.41
2688 13563 4.524316 TGCCGTAAGCTAGTCTTTGTAA 57.476 40.909 5.02 0.00 44.23 2.41
2689 13564 4.885413 TGCCGTAAGCTAGTCTTTGTAAA 58.115 39.130 5.02 0.00 44.23 2.01
2690 13565 5.299148 TGCCGTAAGCTAGTCTTTGTAAAA 58.701 37.500 5.02 0.00 44.23 1.52
2692 13567 5.163884 GCCGTAAGCTAGTCTTTGTAAAAGG 60.164 44.000 5.02 1.40 38.99 3.11
2694 13569 6.128634 CCGTAAGCTAGTCTTTGTAAAAGGTG 60.129 42.308 5.02 0.00 36.25 4.00
2695 13570 6.643770 CGTAAGCTAGTCTTTGTAAAAGGTGA 59.356 38.462 5.02 0.00 36.25 4.02
2697 13572 7.674471 AAGCTAGTCTTTGTAAAAGGTGATC 57.326 36.000 0.00 0.00 0.00 2.92
2698 13573 6.769512 AGCTAGTCTTTGTAAAAGGTGATCA 58.230 36.000 0.00 0.00 0.00 2.92
2701 13576 7.119846 GCTAGTCTTTGTAAAAGGTGATCATGT 59.880 37.037 0.00 0.00 0.00 3.21
2764 13713 4.866508 TTTTCCGACACTGTCATAGACT 57.133 40.909 9.84 0.00 33.15 3.24
2765 13714 5.970317 TTTTCCGACACTGTCATAGACTA 57.030 39.130 9.84 0.00 33.15 2.59
2768 13717 7.634671 TTTCCGACACTGTCATAGACTAATA 57.365 36.000 9.84 0.00 33.15 0.98
2769 13718 6.615264 TCCGACACTGTCATAGACTAATAC 57.385 41.667 9.84 0.00 33.15 1.89
2770 13719 6.117488 TCCGACACTGTCATAGACTAATACA 58.883 40.000 9.84 0.00 33.15 2.29
2771 13720 6.037940 TCCGACACTGTCATAGACTAATACAC 59.962 42.308 9.84 0.00 33.15 2.90
2814 13867 1.476291 CCCAACCGAATAACTAGCCCC 60.476 57.143 0.00 0.00 0.00 5.80
2816 13869 2.701951 CCAACCGAATAACTAGCCCCTA 59.298 50.000 0.00 0.00 0.00 3.53
2818 13871 4.562963 CCAACCGAATAACTAGCCCCTATC 60.563 50.000 0.00 0.00 0.00 2.08
2819 13872 4.129317 ACCGAATAACTAGCCCCTATCT 57.871 45.455 0.00 0.00 0.00 1.98
2820 13873 4.087907 ACCGAATAACTAGCCCCTATCTC 58.912 47.826 0.00 0.00 0.00 2.75
2822 13875 4.527038 CCGAATAACTAGCCCCTATCTCAA 59.473 45.833 0.00 0.00 0.00 3.02
2823 13876 5.011738 CCGAATAACTAGCCCCTATCTCAAA 59.988 44.000 0.00 0.00 0.00 2.69
2828 13884 9.965902 AATAACTAGCCCCTATCTCAAATATTG 57.034 33.333 0.00 0.00 0.00 1.90
2862 13918 0.679321 CTTCCTTGCCCCTCTTCTGC 60.679 60.000 0.00 0.00 0.00 4.26
2880 13936 1.817099 CCCACGCAAGAGCTCCATC 60.817 63.158 10.93 0.00 43.62 3.51
2881 13937 1.078918 CCACGCAAGAGCTCCATCA 60.079 57.895 10.93 0.00 43.62 3.07
2882 13938 0.463295 CCACGCAAGAGCTCCATCAT 60.463 55.000 10.93 0.00 43.62 2.45
2883 13939 1.376543 CACGCAAGAGCTCCATCATT 58.623 50.000 10.93 0.00 43.62 2.57
2884 13940 1.741706 CACGCAAGAGCTCCATCATTT 59.258 47.619 10.93 0.00 43.62 2.32
2885 13941 2.163010 CACGCAAGAGCTCCATCATTTT 59.837 45.455 10.93 0.00 43.62 1.82
2886 13942 2.821969 ACGCAAGAGCTCCATCATTTTT 59.178 40.909 10.93 0.00 43.62 1.94
2887 13943 3.119708 ACGCAAGAGCTCCATCATTTTTC 60.120 43.478 10.93 0.00 43.62 2.29
2888 13944 3.128242 CGCAAGAGCTCCATCATTTTTCT 59.872 43.478 10.93 0.00 43.02 2.52
2889 13945 4.380233 CGCAAGAGCTCCATCATTTTTCTT 60.380 41.667 10.93 0.00 43.02 2.52
2890 13946 5.476614 GCAAGAGCTCCATCATTTTTCTTT 58.523 37.500 10.93 0.00 37.91 2.52
2891 13947 5.930569 GCAAGAGCTCCATCATTTTTCTTTT 59.069 36.000 10.93 0.00 37.91 2.27
2892 13948 6.090493 GCAAGAGCTCCATCATTTTTCTTTTC 59.910 38.462 10.93 0.00 37.91 2.29
2893 13949 7.376615 CAAGAGCTCCATCATTTTTCTTTTCT 58.623 34.615 10.93 0.00 0.00 2.52
2894 13950 7.536159 AGAGCTCCATCATTTTTCTTTTCTT 57.464 32.000 10.93 0.00 0.00 2.52
2895 13951 7.960262 AGAGCTCCATCATTTTTCTTTTCTTT 58.040 30.769 10.93 0.00 0.00 2.52
2896 13952 8.427276 AGAGCTCCATCATTTTTCTTTTCTTTT 58.573 29.630 10.93 0.00 0.00 2.27
2897 13953 8.599055 AGCTCCATCATTTTTCTTTTCTTTTC 57.401 30.769 0.00 0.00 0.00 2.29
2898 13954 7.383300 AGCTCCATCATTTTTCTTTTCTTTTCG 59.617 33.333 0.00 0.00 0.00 3.46
2899 13955 7.382218 GCTCCATCATTTTTCTTTTCTTTTCGA 59.618 33.333 0.00 0.00 0.00 3.71
2900 13956 9.248291 CTCCATCATTTTTCTTTTCTTTTCGAA 57.752 29.630 0.00 0.00 0.00 3.71
2901 13957 9.593134 TCCATCATTTTTCTTTTCTTTTCGAAA 57.407 25.926 6.47 6.47 39.76 3.46
2914 13970 9.917129 TTTTCTTTTCGAAAAGGAATATAACCC 57.083 29.630 37.27 0.00 44.42 4.11
2915 13971 7.634671 TCTTTTCGAAAAGGAATATAACCCC 57.365 36.000 37.27 0.00 44.22 4.95
2916 13972 6.604396 TCTTTTCGAAAAGGAATATAACCCCC 59.396 38.462 37.27 0.00 44.22 5.40
2917 13973 4.075963 TCGAAAAGGAATATAACCCCCG 57.924 45.455 0.00 0.00 0.00 5.73
2918 13974 3.143728 CGAAAAGGAATATAACCCCCGG 58.856 50.000 0.00 0.00 0.00 5.73
2919 13975 2.670019 AAAGGAATATAACCCCCGGC 57.330 50.000 0.00 0.00 0.00 6.13
2920 13976 0.775542 AAGGAATATAACCCCCGGCC 59.224 55.000 0.00 0.00 0.00 6.13
2921 13977 0.104090 AGGAATATAACCCCCGGCCT 60.104 55.000 0.00 0.00 0.00 5.19
2922 13978 0.327259 GGAATATAACCCCCGGCCTC 59.673 60.000 0.00 0.00 0.00 4.70
2923 13979 1.359168 GAATATAACCCCCGGCCTCT 58.641 55.000 0.00 0.00 0.00 3.69
2924 13980 2.543635 GAATATAACCCCCGGCCTCTA 58.456 52.381 0.00 0.00 0.00 2.43
2925 13981 1.948391 ATATAACCCCCGGCCTCTAC 58.052 55.000 0.00 0.00 0.00 2.59
2926 13982 0.562177 TATAACCCCCGGCCTCTACA 59.438 55.000 0.00 0.00 0.00 2.74
2927 13983 0.104620 ATAACCCCCGGCCTCTACAT 60.105 55.000 0.00 0.00 0.00 2.29
2928 13984 0.761702 TAACCCCCGGCCTCTACATC 60.762 60.000 0.00 0.00 0.00 3.06
2929 13985 2.445845 CCCCCGGCCTCTACATCA 60.446 66.667 0.00 0.00 0.00 3.07
2930 13986 2.070039 CCCCCGGCCTCTACATCAA 61.070 63.158 0.00 0.00 0.00 2.57
2931 13987 1.447643 CCCCGGCCTCTACATCAAG 59.552 63.158 0.00 0.00 0.00 3.02
2932 13988 1.227674 CCCGGCCTCTACATCAAGC 60.228 63.158 0.00 0.00 0.00 4.01
2933 13989 1.592669 CCGGCCTCTACATCAAGCG 60.593 63.158 0.00 0.00 0.00 4.68
2934 13990 1.592669 CGGCCTCTACATCAAGCGG 60.593 63.158 0.00 0.00 0.00 5.52
2935 13991 1.522569 GGCCTCTACATCAAGCGGT 59.477 57.895 0.00 0.00 0.00 5.68
2936 13992 0.811616 GGCCTCTACATCAAGCGGTG 60.812 60.000 0.00 0.00 0.00 4.94
2937 13993 1.432270 GCCTCTACATCAAGCGGTGC 61.432 60.000 0.00 0.00 0.00 5.01
2938 13994 0.108186 CCTCTACATCAAGCGGTGCA 60.108 55.000 0.00 0.00 0.00 4.57
2939 13995 1.002366 CTCTACATCAAGCGGTGCAC 58.998 55.000 8.80 8.80 0.00 4.57
2940 13996 0.320050 TCTACATCAAGCGGTGCACA 59.680 50.000 20.43 0.00 0.00 4.57
2941 13997 0.443869 CTACATCAAGCGGTGCACAC 59.556 55.000 20.43 10.24 0.00 3.82
2942 13998 0.250081 TACATCAAGCGGTGCACACA 60.250 50.000 20.43 0.00 0.00 3.72
2943 13999 1.100463 ACATCAAGCGGTGCACACAA 61.100 50.000 20.43 0.57 0.00 3.33
2944 14000 0.241749 CATCAAGCGGTGCACACAAT 59.758 50.000 20.43 0.00 0.00 2.71
2945 14001 0.523072 ATCAAGCGGTGCACACAATC 59.477 50.000 20.43 0.00 0.00 2.67
2946 14002 0.817229 TCAAGCGGTGCACACAATCA 60.817 50.000 20.43 0.00 0.00 2.57
2947 14003 0.241749 CAAGCGGTGCACACAATCAT 59.758 50.000 20.43 0.00 0.00 2.45
2948 14004 0.961019 AAGCGGTGCACACAATCATT 59.039 45.000 20.43 0.09 0.00 2.57
2949 14005 0.961019 AGCGGTGCACACAATCATTT 59.039 45.000 20.43 0.00 0.00 2.32
2950 14006 1.340889 AGCGGTGCACACAATCATTTT 59.659 42.857 20.43 0.00 0.00 1.82
2951 14007 2.134346 GCGGTGCACACAATCATTTTT 58.866 42.857 20.43 0.00 0.00 1.94
2952 14008 3.005261 AGCGGTGCACACAATCATTTTTA 59.995 39.130 20.43 0.00 0.00 1.52
2953 14009 3.925913 GCGGTGCACACAATCATTTTTAT 59.074 39.130 20.43 0.00 0.00 1.40
2954 14010 4.388469 GCGGTGCACACAATCATTTTTATT 59.612 37.500 20.43 0.00 0.00 1.40
2955 14011 5.574830 GCGGTGCACACAATCATTTTTATTA 59.425 36.000 20.43 0.00 0.00 0.98
2956 14012 6.255453 GCGGTGCACACAATCATTTTTATTAT 59.745 34.615 20.43 0.00 0.00 1.28
2957 14013 7.433719 GCGGTGCACACAATCATTTTTATTATA 59.566 33.333 20.43 0.00 0.00 0.98
2958 14014 9.462174 CGGTGCACACAATCATTTTTATTATAT 57.538 29.630 20.43 0.00 0.00 0.86
2977 14033 7.946655 TTATATTATTCAGCAGAACCTGACG 57.053 36.000 0.00 0.00 41.28 4.35
2978 14034 3.678056 TTATTCAGCAGAACCTGACGT 57.322 42.857 0.00 0.00 41.28 4.34
2979 14035 2.086054 ATTCAGCAGAACCTGACGTC 57.914 50.000 9.11 9.11 41.28 4.34
2980 14036 0.750249 TTCAGCAGAACCTGACGTCA 59.250 50.000 18.88 18.88 41.28 4.35
2981 14037 0.032130 TCAGCAGAACCTGACGTCAC 59.968 55.000 15.76 4.81 36.96 3.67
2982 14038 0.249447 CAGCAGAACCTGACGTCACA 60.249 55.000 15.76 0.00 34.77 3.58
2983 14039 0.464036 AGCAGAACCTGACGTCACAA 59.536 50.000 15.76 0.00 32.44 3.33
2984 14040 0.861837 GCAGAACCTGACGTCACAAG 59.138 55.000 15.76 9.01 32.44 3.16
2985 14041 1.806623 GCAGAACCTGACGTCACAAGT 60.807 52.381 15.76 9.70 32.44 3.16
2986 14042 2.545113 GCAGAACCTGACGTCACAAGTA 60.545 50.000 15.76 0.00 32.44 2.24
2987 14043 3.050619 CAGAACCTGACGTCACAAGTAC 58.949 50.000 15.76 4.53 32.44 2.73
2988 14044 2.691526 AGAACCTGACGTCACAAGTACA 59.308 45.455 15.76 0.00 0.00 2.90
2989 14045 3.321111 AGAACCTGACGTCACAAGTACAT 59.679 43.478 15.76 0.00 0.00 2.29
2990 14046 3.026630 ACCTGACGTCACAAGTACATG 57.973 47.619 15.76 1.06 0.00 3.21
2991 14047 2.288825 ACCTGACGTCACAAGTACATGG 60.289 50.000 15.76 13.36 0.00 3.66
2992 14048 2.029380 CCTGACGTCACAAGTACATGGA 60.029 50.000 15.76 0.00 0.00 3.41
2993 14049 3.368427 CCTGACGTCACAAGTACATGGAT 60.368 47.826 15.76 0.00 0.00 3.41
2994 14050 4.142249 CCTGACGTCACAAGTACATGGATA 60.142 45.833 15.76 0.00 0.00 2.59
2995 14051 5.394224 TGACGTCACAAGTACATGGATAA 57.606 39.130 15.76 0.00 0.00 1.75
2996 14052 5.785243 TGACGTCACAAGTACATGGATAAA 58.215 37.500 15.76 0.00 0.00 1.40
2997 14053 5.636121 TGACGTCACAAGTACATGGATAAAC 59.364 40.000 15.76 0.00 0.00 2.01
2998 14054 4.933400 ACGTCACAAGTACATGGATAAACC 59.067 41.667 2.78 0.00 39.54 3.27
2999 14055 5.175859 CGTCACAAGTACATGGATAAACCT 58.824 41.667 2.78 0.00 39.86 3.50
3000 14056 6.071221 ACGTCACAAGTACATGGATAAACCTA 60.071 38.462 2.78 0.00 39.86 3.08
3001 14057 6.814644 CGTCACAAGTACATGGATAAACCTAA 59.185 38.462 2.78 0.00 39.86 2.69
3002 14058 7.332430 CGTCACAAGTACATGGATAAACCTAAA 59.668 37.037 2.78 0.00 39.86 1.85
3003 14059 8.665685 GTCACAAGTACATGGATAAACCTAAAG 58.334 37.037 2.78 0.00 39.86 1.85
3004 14060 7.335924 TCACAAGTACATGGATAAACCTAAAGC 59.664 37.037 2.78 0.00 39.86 3.51
3005 14061 6.602009 ACAAGTACATGGATAAACCTAAAGCC 59.398 38.462 2.78 0.00 39.86 4.35
3006 14062 6.321821 AGTACATGGATAAACCTAAAGCCA 57.678 37.500 0.00 0.00 39.86 4.75
3007 14063 6.120220 AGTACATGGATAAACCTAAAGCCAC 58.880 40.000 0.00 0.00 39.86 5.01
3008 14064 4.278310 ACATGGATAAACCTAAAGCCACC 58.722 43.478 0.00 0.00 39.86 4.61
3009 14065 4.017499 ACATGGATAAACCTAAAGCCACCT 60.017 41.667 0.00 0.00 39.86 4.00
3010 14066 4.668138 TGGATAAACCTAAAGCCACCTT 57.332 40.909 0.00 0.00 39.86 3.50
3011 14067 4.595986 TGGATAAACCTAAAGCCACCTTC 58.404 43.478 0.00 0.00 39.86 3.46
3012 14068 3.952323 GGATAAACCTAAAGCCACCTTCC 59.048 47.826 0.00 0.00 35.41 3.46
3013 14069 4.325109 GGATAAACCTAAAGCCACCTTCCT 60.325 45.833 0.00 0.00 35.41 3.36
3014 14070 2.586648 AACCTAAAGCCACCTTCCTG 57.413 50.000 0.00 0.00 0.00 3.86
3015 14071 0.698818 ACCTAAAGCCACCTTCCTGG 59.301 55.000 0.00 0.00 42.93 4.45
3022 14078 2.571548 CCACCTTCCTGGCAATCAC 58.428 57.895 0.00 0.00 40.22 3.06
3023 14079 0.251297 CCACCTTCCTGGCAATCACA 60.251 55.000 0.00 0.00 40.22 3.58
3024 14080 1.171308 CACCTTCCTGGCAATCACAG 58.829 55.000 0.00 0.00 40.22 3.66
3025 14081 0.773644 ACCTTCCTGGCAATCACAGT 59.226 50.000 0.00 0.00 40.22 3.55
3026 14082 1.271597 ACCTTCCTGGCAATCACAGTC 60.272 52.381 0.00 0.00 40.22 3.51
3027 14083 1.081892 CTTCCTGGCAATCACAGTCG 58.918 55.000 0.00 0.00 34.16 4.18
3028 14084 0.955428 TTCCTGGCAATCACAGTCGC 60.955 55.000 0.00 0.00 34.16 5.19
3029 14085 1.376424 CCTGGCAATCACAGTCGCT 60.376 57.895 0.00 0.00 34.16 4.93
3030 14086 0.108186 CCTGGCAATCACAGTCGCTA 60.108 55.000 0.00 0.00 34.16 4.26
3031 14087 1.002366 CTGGCAATCACAGTCGCTAC 58.998 55.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.472478 TGACTATAGCCATGGTAGACTAACG 59.528 44.000 14.67 4.45 0.00 3.18
1 2 6.896021 TGACTATAGCCATGGTAGACTAAC 57.104 41.667 14.67 0.00 0.00 2.34
2 3 8.492415 AAATGACTATAGCCATGGTAGACTAA 57.508 34.615 14.67 0.00 0.00 2.24
4 5 8.492415 TTAAATGACTATAGCCATGGTAGACT 57.508 34.615 14.67 4.09 0.00 3.24
5 6 9.726438 AATTAAATGACTATAGCCATGGTAGAC 57.274 33.333 14.67 8.33 0.00 2.59
9 10 9.466497 CCATAATTAAATGACTATAGCCATGGT 57.534 33.333 14.67 2.69 0.00 3.55
10 11 9.466497 ACCATAATTAAATGACTATAGCCATGG 57.534 33.333 7.63 7.63 34.29 3.66
19 20 9.273016 GCTAGCAGAACCATAATTAAATGACTA 57.727 33.333 10.63 0.00 0.00 2.59
20 21 7.995488 AGCTAGCAGAACCATAATTAAATGACT 59.005 33.333 18.83 0.00 0.00 3.41
21 22 8.072567 CAGCTAGCAGAACCATAATTAAATGAC 58.927 37.037 18.83 0.00 0.00 3.06
22 23 7.255242 GCAGCTAGCAGAACCATAATTAAATGA 60.255 37.037 18.83 0.00 44.79 2.57
23 24 6.860023 GCAGCTAGCAGAACCATAATTAAATG 59.140 38.462 18.83 0.76 44.79 2.32
24 25 6.974965 GCAGCTAGCAGAACCATAATTAAAT 58.025 36.000 18.83 0.00 44.79 1.40
25 26 6.377327 GCAGCTAGCAGAACCATAATTAAA 57.623 37.500 18.83 0.00 44.79 1.52
67 68 8.277197 TGGAGTGGTACTAGTAGTATAATGTGT 58.723 37.037 13.09 0.00 32.65 3.72
102 106 6.522054 GTCAAGGCCTAGCTAATTACATGTA 58.478 40.000 5.16 0.08 0.00 2.29
108 112 3.746045 CCGTCAAGGCCTAGCTAATTA 57.254 47.619 5.16 0.00 0.00 1.40
122 126 2.360483 TGCTTTTGATTCTTGCCGTCAA 59.640 40.909 0.00 0.00 0.00 3.18
129 133 3.323243 CCTGCCTTGCTTTTGATTCTTG 58.677 45.455 0.00 0.00 0.00 3.02
132 136 1.001181 TGCCTGCCTTGCTTTTGATTC 59.999 47.619 0.00 0.00 0.00 2.52
137 141 1.152483 TCCTGCCTGCCTTGCTTTT 60.152 52.632 0.00 0.00 0.00 2.27
158 162 2.903547 GCGAGGAGGAGCGAGCTAG 61.904 68.421 0.00 0.00 0.00 3.42
169 175 2.208431 GATGGAAGTCAATGCGAGGAG 58.792 52.381 0.00 0.00 0.00 3.69
174 180 1.262417 CGATGGATGGAAGTCAATGCG 59.738 52.381 0.00 0.00 0.00 4.73
200 223 4.765449 ATCTTGCTCGCAGCGGCA 62.765 61.111 22.19 22.19 46.26 5.69
201 224 3.934684 GATCTTGCTCGCAGCGGC 61.935 66.667 16.42 17.44 46.26 6.53
202 225 3.624300 CGATCTTGCTCGCAGCGG 61.624 66.667 16.42 6.95 46.26 5.52
203 226 1.485838 AATCGATCTTGCTCGCAGCG 61.486 55.000 9.06 9.06 46.26 5.18
206 229 2.008752 TGAAATCGATCTTGCTCGCA 57.991 45.000 0.00 0.00 38.52 5.10
208 231 5.386831 CGAGTTATGAAATCGATCTTGCTCG 60.387 44.000 0.00 8.52 38.72 5.03
219 242 9.543783 AAGTCCCTATTTACGAGTTATGAAATC 57.456 33.333 0.00 0.00 0.00 2.17
226 249 5.419788 TCTGCAAGTCCCTATTTACGAGTTA 59.580 40.000 0.00 0.00 33.76 2.24
227 250 4.222145 TCTGCAAGTCCCTATTTACGAGTT 59.778 41.667 0.00 0.00 33.76 3.01
233 256 5.684704 CAATCCTCTGCAAGTCCCTATTTA 58.315 41.667 0.00 0.00 33.76 1.40
237 260 1.210478 GCAATCCTCTGCAAGTCCCTA 59.790 52.381 0.00 0.00 42.17 3.53
241 264 2.094854 CCAAAGCAATCCTCTGCAAGTC 60.095 50.000 0.00 0.00 45.18 3.01
244 267 0.604578 GCCAAAGCAATCCTCTGCAA 59.395 50.000 0.00 0.00 45.18 4.08
261 284 3.897819 GATCGGTCGATGTTTTGCC 57.102 52.632 10.77 0.00 34.60 4.52
274 297 1.655350 GGTTACGTACGGCGATCGG 60.655 63.158 21.06 3.26 44.77 4.18
282 305 4.685628 ACACAAATACCTTGGTTACGTACG 59.314 41.667 15.01 15.01 39.56 3.67
283 306 5.466393 ACACACAAATACCTTGGTTACGTAC 59.534 40.000 0.00 0.00 39.56 3.67
284 307 5.609423 ACACACAAATACCTTGGTTACGTA 58.391 37.500 0.00 0.00 39.56 3.57
285 308 4.453751 ACACACAAATACCTTGGTTACGT 58.546 39.130 0.00 0.00 39.56 3.57
286 309 5.427036 AACACACAAATACCTTGGTTACG 57.573 39.130 0.00 0.00 39.56 3.18
290 313 7.787028 ACAAATTAACACACAAATACCTTGGT 58.213 30.769 0.00 0.00 39.56 3.67
322 345 7.609097 ATCAGATCTAGCAGAACCAGATTAA 57.391 36.000 0.00 0.00 0.00 1.40
323 346 7.609097 AATCAGATCTAGCAGAACCAGATTA 57.391 36.000 0.00 0.00 28.18 1.75
324 347 6.497624 AATCAGATCTAGCAGAACCAGATT 57.502 37.500 0.00 0.00 0.00 2.40
325 348 6.497624 AAATCAGATCTAGCAGAACCAGAT 57.502 37.500 0.00 0.00 0.00 2.90
326 349 5.946942 AAATCAGATCTAGCAGAACCAGA 57.053 39.130 0.00 0.00 0.00 3.86
327 350 6.347696 AGAAAATCAGATCTAGCAGAACCAG 58.652 40.000 0.00 0.00 0.00 4.00
328 351 6.305272 AGAAAATCAGATCTAGCAGAACCA 57.695 37.500 0.00 0.00 0.00 3.67
329 352 6.019156 CGAAGAAAATCAGATCTAGCAGAACC 60.019 42.308 0.00 0.00 0.00 3.62
334 357 4.162320 ACCCGAAGAAAATCAGATCTAGCA 59.838 41.667 0.00 0.00 0.00 3.49
335 358 4.509600 CACCCGAAGAAAATCAGATCTAGC 59.490 45.833 0.00 0.00 0.00 3.42
336 359 5.053145 CCACCCGAAGAAAATCAGATCTAG 58.947 45.833 0.00 0.00 0.00 2.43
337 360 4.714802 TCCACCCGAAGAAAATCAGATCTA 59.285 41.667 0.00 0.00 0.00 1.98
338 361 3.519510 TCCACCCGAAGAAAATCAGATCT 59.480 43.478 0.00 0.00 0.00 2.75
339 362 3.873910 TCCACCCGAAGAAAATCAGATC 58.126 45.455 0.00 0.00 0.00 2.75
356 380 0.759060 AAAACCTGGGTGCCTTCCAC 60.759 55.000 0.00 0.00 43.90 4.02
358 382 1.185618 GGAAAACCTGGGTGCCTTCC 61.186 60.000 0.00 0.00 0.00 3.46
365 389 3.706086 GCATGATAATGGAAAACCTGGGT 59.294 43.478 0.00 0.00 0.00 4.51
366 390 3.962718 AGCATGATAATGGAAAACCTGGG 59.037 43.478 0.00 0.00 0.00 4.45
370 394 3.960102 TGGGAGCATGATAATGGAAAACC 59.040 43.478 0.00 0.00 0.00 3.27
375 399 4.458256 AACATGGGAGCATGATAATGGA 57.542 40.909 0.00 0.00 36.48 3.41
376 400 4.320714 CGAAACATGGGAGCATGATAATGG 60.321 45.833 0.00 0.00 36.48 3.16
377 401 4.516321 TCGAAACATGGGAGCATGATAATG 59.484 41.667 0.00 0.00 36.48 1.90
378 402 4.717877 TCGAAACATGGGAGCATGATAAT 58.282 39.130 0.00 0.00 36.48 1.28
379 403 4.149511 TCGAAACATGGGAGCATGATAA 57.850 40.909 0.00 0.00 36.48 1.75
380 404 3.836365 TCGAAACATGGGAGCATGATA 57.164 42.857 0.00 0.00 36.48 2.15
381 405 2.715749 TCGAAACATGGGAGCATGAT 57.284 45.000 0.00 0.00 36.48 2.45
382 406 2.715749 ATCGAAACATGGGAGCATGA 57.284 45.000 0.00 0.00 36.48 3.07
383 407 2.033801 GGAATCGAAACATGGGAGCATG 59.966 50.000 0.00 0.00 38.46 4.06
384 408 2.301346 GGAATCGAAACATGGGAGCAT 58.699 47.619 0.00 0.00 0.00 3.79
385 409 1.004161 TGGAATCGAAACATGGGAGCA 59.996 47.619 0.00 0.00 0.00 4.26
386 410 1.750193 TGGAATCGAAACATGGGAGC 58.250 50.000 0.00 0.00 0.00 4.70
398 422 7.095857 CTTCGAGAGGAAATTAAGATGGAATCG 60.096 40.741 0.00 0.00 40.70 3.34
403 427 5.755861 GGACTTCGAGAGGAAATTAAGATGG 59.244 44.000 0.00 0.00 33.34 3.51
415 439 1.181786 AGCAAGAGGACTTCGAGAGG 58.818 55.000 0.00 0.00 33.70 3.69
437 461 7.611467 TGACATGACAAGGAAATTAGTTGCTAT 59.389 33.333 0.00 0.00 36.80 2.97
442 466 8.299570 GTGATTGACATGACAAGGAAATTAGTT 58.700 33.333 15.47 0.00 33.22 2.24
456 487 2.679336 CCAAGATGCGTGATTGACATGA 59.321 45.455 0.00 0.00 37.69 3.07
485 516 4.532834 TGTAAGCTTCTCCAACAGGTTTT 58.467 39.130 0.00 0.00 32.96 2.43
487 518 3.857157 TGTAAGCTTCTCCAACAGGTT 57.143 42.857 0.00 0.00 35.04 3.50
488 519 3.584848 AGATGTAAGCTTCTCCAACAGGT 59.415 43.478 0.00 0.00 0.00 4.00
533 565 3.057734 CCAGTTACTTTGACTCGGTGTC 58.942 50.000 3.34 3.34 45.54 3.67
538 570 1.798813 GGTGCCAGTTACTTTGACTCG 59.201 52.381 0.00 0.00 0.00 4.18
541 573 3.211045 TCTTGGTGCCAGTTACTTTGAC 58.789 45.455 0.00 0.00 0.00 3.18
543 575 3.569701 ACATCTTGGTGCCAGTTACTTTG 59.430 43.478 0.00 0.00 0.00 2.77
544 576 3.569701 CACATCTTGGTGCCAGTTACTTT 59.430 43.478 0.00 0.00 31.10 2.66
545 577 3.149196 CACATCTTGGTGCCAGTTACTT 58.851 45.455 0.00 0.00 31.10 2.24
546 578 2.553028 CCACATCTTGGTGCCAGTTACT 60.553 50.000 0.00 0.00 41.10 2.24
547 579 1.812571 CCACATCTTGGTGCCAGTTAC 59.187 52.381 0.00 0.00 41.10 2.50
548 580 2.198827 CCACATCTTGGTGCCAGTTA 57.801 50.000 0.00 0.00 41.10 2.24
550 582 4.828409 CCACATCTTGGTGCCAGT 57.172 55.556 0.00 0.00 41.10 4.00
572 607 5.819379 GCTGAAGATGTGATCAGGACAATTA 59.181 40.000 0.00 0.00 42.62 1.40
577 612 3.132646 AGAGCTGAAGATGTGATCAGGAC 59.867 47.826 0.00 0.00 42.62 3.85
593 628 2.975732 TCTGCCTGTTCATAGAGCTG 57.024 50.000 0.00 0.00 0.00 4.24
594 629 5.365025 TCTTTATCTGCCTGTTCATAGAGCT 59.635 40.000 0.00 0.00 0.00 4.09
595 630 5.605534 TCTTTATCTGCCTGTTCATAGAGC 58.394 41.667 0.00 0.00 0.00 4.09
600 635 6.899393 TTGTTTCTTTATCTGCCTGTTCAT 57.101 33.333 0.00 0.00 0.00 2.57
607 642 6.555315 CAGGTGTATTGTTTCTTTATCTGCC 58.445 40.000 0.00 0.00 0.00 4.85
638 673 6.919115 GTGCTGTCGAAATTAAAGGGTAAAAA 59.081 34.615 0.00 0.00 0.00 1.94
639 674 6.039493 TGTGCTGTCGAAATTAAAGGGTAAAA 59.961 34.615 0.00 0.00 0.00 1.52
642 677 4.643463 TGTGCTGTCGAAATTAAAGGGTA 58.357 39.130 0.00 0.00 0.00 3.69
646 681 8.443160 TCTTTAGATGTGCTGTCGAAATTAAAG 58.557 33.333 0.00 0.00 0.00 1.85
656 691 8.125448 GGAAACATATTCTTTAGATGTGCTGTC 58.875 37.037 0.00 0.00 34.10 3.51
659 694 7.067494 GGTGGAAACATATTCTTTAGATGTGCT 59.933 37.037 0.00 0.00 46.14 4.40
660 695 7.067494 AGGTGGAAACATATTCTTTAGATGTGC 59.933 37.037 0.00 0.00 46.14 4.57
677 712 5.684626 CGTCGACATAATACTAGGTGGAAAC 59.315 44.000 17.16 0.00 29.98 2.78
678 713 5.589855 TCGTCGACATAATACTAGGTGGAAA 59.410 40.000 17.16 0.00 29.98 3.13
679 714 5.008019 GTCGTCGACATAATACTAGGTGGAA 59.992 44.000 20.28 0.00 29.98 3.53
680 715 4.512944 GTCGTCGACATAATACTAGGTGGA 59.487 45.833 20.28 0.00 32.09 4.02
681 716 4.320057 GGTCGTCGACATAATACTAGGTGG 60.320 50.000 25.64 0.00 33.68 4.61
682 717 4.610007 CGGTCGTCGACATAATACTAGGTG 60.610 50.000 25.64 0.00 42.43 4.00
683 718 3.496130 CGGTCGTCGACATAATACTAGGT 59.504 47.826 25.64 0.00 42.43 3.08
684 719 3.120408 CCGGTCGTCGACATAATACTAGG 60.120 52.174 25.64 10.56 42.43 3.02
685 720 3.496130 ACCGGTCGTCGACATAATACTAG 59.504 47.826 25.64 6.50 42.43 2.57
686 721 3.248363 CACCGGTCGTCGACATAATACTA 59.752 47.826 25.64 0.00 42.43 1.82
687 722 2.032550 CACCGGTCGTCGACATAATACT 59.967 50.000 25.64 0.00 42.43 2.12
694 729 3.359523 CTCCACCGGTCGTCGACA 61.360 66.667 25.64 4.28 42.43 4.35
701 736 1.617947 ATCCAGCTTCTCCACCGGTC 61.618 60.000 2.59 0.00 0.00 4.79
703 738 1.144936 GATCCAGCTTCTCCACCGG 59.855 63.158 0.00 0.00 0.00 5.28
705 740 1.138661 CTCAGATCCAGCTTCTCCACC 59.861 57.143 0.00 0.00 0.00 4.61
711 746 2.485903 CATCAGCTCAGATCCAGCTTC 58.514 52.381 13.05 0.00 45.34 3.86
723 758 0.747283 CTGGTTCTGGGCATCAGCTC 60.747 60.000 1.88 0.00 43.06 4.09
724 759 1.203441 TCTGGTTCTGGGCATCAGCT 61.203 55.000 1.88 0.00 43.06 4.24
726 761 0.107312 CCTCTGGTTCTGGGCATCAG 60.107 60.000 0.43 0.43 44.68 2.90
727 762 0.547471 TCCTCTGGTTCTGGGCATCA 60.547 55.000 0.00 0.00 0.00 3.07
728 763 0.179936 CTCCTCTGGTTCTGGGCATC 59.820 60.000 0.00 0.00 0.00 3.91
730 765 0.252881 ATCTCCTCTGGTTCTGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
731 766 0.467804 GATCTCCTCTGGTTCTGGGC 59.532 60.000 0.00 0.00 0.00 5.36
732 767 1.871418 TGATCTCCTCTGGTTCTGGG 58.129 55.000 0.00 0.00 0.00 4.45
733 768 2.770802 ACATGATCTCCTCTGGTTCTGG 59.229 50.000 0.00 0.00 0.00 3.86
734 769 4.484537 AACATGATCTCCTCTGGTTCTG 57.515 45.455 0.00 0.00 0.00 3.02
738 806 5.070180 CACATCTAACATGATCTCCTCTGGT 59.930 44.000 0.00 0.00 0.00 4.00
749 817 5.047590 ACGGTACTGAACACATCTAACATGA 60.048 40.000 9.17 0.00 0.00 3.07
752 820 4.859304 ACGGTACTGAACACATCTAACA 57.141 40.909 9.17 0.00 0.00 2.41
755 823 5.243507 TGGTTTACGGTACTGAACACATCTA 59.756 40.000 9.17 0.00 0.00 1.98
758 826 4.039488 TCTGGTTTACGGTACTGAACACAT 59.961 41.667 9.17 0.00 0.00 3.21
759 827 3.384146 TCTGGTTTACGGTACTGAACACA 59.616 43.478 9.17 3.59 0.00 3.72
765 833 3.119101 AGCATCTCTGGTTTACGGTACTG 60.119 47.826 0.00 0.00 0.00 2.74
766 834 3.097614 AGCATCTCTGGTTTACGGTACT 58.902 45.455 0.00 0.00 0.00 2.73
771 839 2.932614 CAAGGAGCATCTCTGGTTTACG 59.067 50.000 0.00 0.00 31.99 3.18
773 841 4.326826 CAACAAGGAGCATCTCTGGTTTA 58.673 43.478 0.00 0.00 30.38 2.01
774 842 3.152341 CAACAAGGAGCATCTCTGGTTT 58.848 45.455 0.00 0.00 30.38 3.27
775 843 2.553904 CCAACAAGGAGCATCTCTGGTT 60.554 50.000 0.00 0.00 41.22 3.67
789 861 4.053295 CAGGCATCAAGTTTTCCAACAAG 58.947 43.478 0.00 0.00 35.05 3.16
793 865 2.627699 GTCCAGGCATCAAGTTTTCCAA 59.372 45.455 0.00 0.00 0.00 3.53
795 867 2.238521 TGTCCAGGCATCAAGTTTTCC 58.761 47.619 0.00 0.00 0.00 3.13
796 868 4.458989 TGTATGTCCAGGCATCAAGTTTTC 59.541 41.667 0.12 0.00 0.00 2.29
797 869 4.406456 TGTATGTCCAGGCATCAAGTTTT 58.594 39.130 0.12 0.00 0.00 2.43
806 878 4.835284 TGTCTAAATGTATGTCCAGGCA 57.165 40.909 0.00 0.00 0.00 4.75
812 884 8.492673 TCTCCATGTTTGTCTAAATGTATGTC 57.507 34.615 0.00 0.00 0.00 3.06
814 886 8.498054 ACTCTCCATGTTTGTCTAAATGTATG 57.502 34.615 0.00 0.00 0.00 2.39
819 891 6.306987 ACCAACTCTCCATGTTTGTCTAAAT 58.693 36.000 0.00 0.00 0.00 1.40
820 892 5.690865 ACCAACTCTCCATGTTTGTCTAAA 58.309 37.500 0.00 0.00 0.00 1.85
821 893 5.304686 ACCAACTCTCCATGTTTGTCTAA 57.695 39.130 0.00 0.00 0.00 2.10
822 894 4.974645 ACCAACTCTCCATGTTTGTCTA 57.025 40.909 0.00 0.00 0.00 2.59
824 896 6.575162 ATTAACCAACTCTCCATGTTTGTC 57.425 37.500 0.00 0.00 0.00 3.18
826 898 7.219484 AGAATTAACCAACTCTCCATGTTTG 57.781 36.000 0.00 0.00 0.00 2.93
828 900 6.884836 GGTAGAATTAACCAACTCTCCATGTT 59.115 38.462 4.86 0.00 36.96 2.71
829 901 6.415573 GGTAGAATTAACCAACTCTCCATGT 58.584 40.000 4.86 0.00 36.96 3.21
830 902 5.523916 CGGTAGAATTAACCAACTCTCCATG 59.476 44.000 9.50 0.00 36.78 3.66
832 904 4.622220 GCGGTAGAATTAACCAACTCTCCA 60.622 45.833 9.50 0.00 36.78 3.86
833 905 3.869832 GCGGTAGAATTAACCAACTCTCC 59.130 47.826 9.50 0.00 36.78 3.71
834 906 4.567159 CAGCGGTAGAATTAACCAACTCTC 59.433 45.833 9.50 0.00 36.78 3.20
837 909 3.007635 GCAGCGGTAGAATTAACCAACT 58.992 45.455 9.50 4.02 36.78 3.16
838 910 2.096980 GGCAGCGGTAGAATTAACCAAC 59.903 50.000 9.50 2.12 36.78 3.77
843 921 2.237643 TCAAGGGCAGCGGTAGAATTAA 59.762 45.455 0.00 0.00 0.00 1.40
851 929 4.349503 TGCATCAAGGGCAGCGGT 62.350 61.111 0.00 0.00 36.11 5.68
860 938 3.784511 ATGTAGATCCCCTGCATCAAG 57.215 47.619 0.00 0.00 43.39 3.02
861 939 3.718434 AGAATGTAGATCCCCTGCATCAA 59.282 43.478 0.00 0.00 45.59 2.57
869 947 8.606830 AGGAACAATTATAGAATGTAGATCCCC 58.393 37.037 0.00 0.00 0.00 4.81
908 990 7.965718 AGCCCCTATACGTAATTACACAATTA 58.034 34.615 15.67 0.00 35.88 1.40
923 1005 2.011122 TGTGAGGCTAGCCCCTATAC 57.989 55.000 30.42 20.33 34.69 1.47
925 1007 2.124560 ATTGTGAGGCTAGCCCCTAT 57.875 50.000 30.42 16.75 34.69 2.57
929 1011 6.709018 TTTATTTTATTGTGAGGCTAGCCC 57.291 37.500 30.42 21.06 36.58 5.19
930 1012 8.846211 TGTATTTATTTTATTGTGAGGCTAGCC 58.154 33.333 27.19 27.19 0.00 3.93
944 1026 9.030452 ACACCCTTGAGCAATGTATTTATTTTA 57.970 29.630 0.00 0.00 0.00 1.52
945 1027 7.818930 CACACCCTTGAGCAATGTATTTATTTT 59.181 33.333 0.00 0.00 0.00 1.82
946 1028 7.322664 CACACCCTTGAGCAATGTATTTATTT 58.677 34.615 0.00 0.00 0.00 1.40
947 1029 6.627953 GCACACCCTTGAGCAATGTATTTATT 60.628 38.462 0.00 0.00 39.02 1.40
948 1030 5.163519 GCACACCCTTGAGCAATGTATTTAT 60.164 40.000 0.00 0.00 39.02 1.40
950 1032 3.056607 GCACACCCTTGAGCAATGTATTT 60.057 43.478 0.00 0.00 39.02 1.40
951 1033 2.493278 GCACACCCTTGAGCAATGTATT 59.507 45.455 0.00 0.00 39.02 1.89
952 1034 2.094675 GCACACCCTTGAGCAATGTAT 58.905 47.619 0.00 0.00 39.02 2.29
953 1035 1.202867 TGCACACCCTTGAGCAATGTA 60.203 47.619 0.00 0.00 45.08 2.29
954 1036 0.467844 TGCACACCCTTGAGCAATGT 60.468 50.000 0.00 0.00 45.08 2.71
955 1037 2.343506 TGCACACCCTTGAGCAATG 58.656 52.632 0.00 0.00 45.08 2.82
956 1038 4.927557 TGCACACCCTTGAGCAAT 57.072 50.000 0.00 0.00 45.08 3.56
959 1041 0.961019 TGAAATGCACACCCTTGAGC 59.039 50.000 0.00 0.00 39.59 4.26
960 1042 3.947910 AATGAAATGCACACCCTTGAG 57.052 42.857 0.00 0.00 0.00 3.02
961 1043 4.686191 AAAATGAAATGCACACCCTTGA 57.314 36.364 0.00 0.00 0.00 3.02
962 1044 7.299586 CAAATAAAATGAAATGCACACCCTTG 58.700 34.615 0.00 0.00 0.00 3.61
971 1053 8.595781 CAATCACTGCAAATAAAATGAAATGC 57.404 30.769 0.00 0.00 0.00 3.56
1006 1121 2.545952 CGTGACTTGTACAGGCTTCACT 60.546 50.000 19.69 0.00 32.84 3.41
1033 1148 0.977108 AGCAGAAGCCTCTCCAGGAG 60.977 60.000 10.70 10.70 43.65 3.69
1083 10911 2.877097 TGCCTTGCAGGAGTGATAAA 57.123 45.000 0.00 0.00 37.67 1.40
1092 10920 2.289195 ACAATTTGTGATGCCTTGCAGG 60.289 45.455 0.15 0.00 43.65 4.85
1183 11014 3.432326 GGATTGGAGAAACTAGCCGATGT 60.432 47.826 0.00 0.00 0.00 3.06
1188 11019 3.366052 TTGGGATTGGAGAAACTAGCC 57.634 47.619 0.00 0.00 0.00 3.93
1256 11103 1.942657 ACAAGACTCATGTGTGTGTGC 59.057 47.619 4.90 0.00 32.58 4.57
1292 11167 1.214589 CGACAACTCCCTACGGTGG 59.785 63.158 0.00 0.00 0.00 4.61
1360 11235 6.067350 AGCCTCTTCATGGAATTTAATCTCC 58.933 40.000 0.00 0.00 0.00 3.71
1365 11240 9.125026 GATTTCTAGCCTCTTCATGGAATTTAA 57.875 33.333 0.00 0.00 0.00 1.52
1383 11258 5.824624 TGCTTGGCCTTTATCAGATTTCTAG 59.175 40.000 3.32 0.00 0.00 2.43
1390 11265 2.877097 TGTGCTTGGCCTTTATCAGA 57.123 45.000 3.32 0.00 0.00 3.27
1465 11340 3.071602 CCATGACAAGATTCCCCTCGTAT 59.928 47.826 0.00 0.00 0.00 3.06
1604 11482 6.160684 AGTGTACGACATGCTATGTGTTTTA 58.839 36.000 6.52 0.00 45.03 1.52
1607 11485 4.188247 AGTGTACGACATGCTATGTGTT 57.812 40.909 6.52 0.00 45.03 3.32
1611 11489 6.887376 AAAGTAAGTGTACGACATGCTATG 57.113 37.500 0.00 0.00 35.20 2.23
1668 12105 8.792830 AAGTAAGTTTATGACATGCTATGTGT 57.207 30.769 6.52 0.00 45.03 3.72
1840 12282 7.067008 GCAGCTGGGATTTGTAATTTCTTACTA 59.933 37.037 17.12 0.00 38.44 1.82
1850 12292 1.635487 AGGAGCAGCTGGGATTTGTAA 59.365 47.619 17.12 0.00 0.00 2.41
1876 12318 2.645838 AGTCCACAAGTTGCATCTGT 57.354 45.000 1.81 0.00 0.00 3.41
1905 12347 6.010219 CCCCCTGATTATTTGATACCGATTT 58.990 40.000 0.00 0.00 0.00 2.17
1941 12383 4.246458 CCTTCTCACGGAGGAAAACTAAG 58.754 47.826 1.76 0.00 0.00 2.18
1950 12392 1.834263 AGAATTCCCTTCTCACGGAGG 59.166 52.381 0.65 0.00 40.26 4.30
2039 12483 4.194640 GCTTGAGTGAGGCATCTTGATAA 58.805 43.478 0.00 0.00 0.00 1.75
2147 12596 4.522114 TGAAGCCCAATCAACGATGAATA 58.478 39.130 0.00 0.00 39.49 1.75
2151 12600 3.788333 AATGAAGCCCAATCAACGATG 57.212 42.857 0.00 0.00 0.00 3.84
2194 12654 3.823304 CCGATCTGATGTACTCTGGATCA 59.177 47.826 0.00 6.51 35.51 2.92
2215 12675 4.077822 CTGATGAGAATCCAATTAGGCCC 58.922 47.826 0.00 0.00 37.29 5.80
2290 12750 4.190772 TCACATGCTCATCTTTGCGATTA 58.809 39.130 0.00 0.00 0.00 1.75
2291 12751 3.011818 TCACATGCTCATCTTTGCGATT 58.988 40.909 0.00 0.00 0.00 3.34
2407 12873 6.783708 TTTCCCGTGGCAATAGATATTTTT 57.216 33.333 0.00 0.00 0.00 1.94
2431 12897 2.359850 GTGTGCTGGGCGGATCAA 60.360 61.111 0.00 0.00 0.00 2.57
2438 12904 1.669999 GAATCCATGGTGTGCTGGGC 61.670 60.000 12.58 0.00 33.13 5.36
2440 12906 0.033796 AGGAATCCATGGTGTGCTGG 60.034 55.000 12.58 0.00 0.00 4.85
2447 12913 3.007182 CACAAAAGCAAGGAATCCATGGT 59.993 43.478 12.58 3.11 34.33 3.55
2448 12914 3.592059 CACAAAAGCAAGGAATCCATGG 58.408 45.455 4.97 4.97 0.00 3.66
2449 12915 3.258872 TCCACAAAAGCAAGGAATCCATG 59.741 43.478 0.61 0.00 0.00 3.66
2450 12916 3.509442 TCCACAAAAGCAAGGAATCCAT 58.491 40.909 0.61 0.00 0.00 3.41
2451 12917 2.892852 CTCCACAAAAGCAAGGAATCCA 59.107 45.455 0.61 0.00 0.00 3.41
2452 12918 2.232208 CCTCCACAAAAGCAAGGAATCC 59.768 50.000 0.00 0.00 0.00 3.01
2453 12919 2.893489 ACCTCCACAAAAGCAAGGAATC 59.107 45.455 0.00 0.00 0.00 2.52
2454 12920 2.962859 ACCTCCACAAAAGCAAGGAAT 58.037 42.857 0.00 0.00 0.00 3.01
2455 12921 2.452600 ACCTCCACAAAAGCAAGGAA 57.547 45.000 0.00 0.00 0.00 3.36
2456 12922 3.586470 TTACCTCCACAAAAGCAAGGA 57.414 42.857 0.00 0.00 0.00 3.36
2457 12923 4.871933 ATTTACCTCCACAAAAGCAAGG 57.128 40.909 0.00 0.00 0.00 3.61
2459 12925 5.860941 TCAATTTACCTCCACAAAAGCAA 57.139 34.783 0.00 0.00 0.00 3.91
2460 12926 5.538053 TGATCAATTTACCTCCACAAAAGCA 59.462 36.000 0.00 0.00 0.00 3.91
2461 12927 6.024552 TGATCAATTTACCTCCACAAAAGC 57.975 37.500 0.00 0.00 0.00 3.51
2462 12928 9.492973 AAAATGATCAATTTACCTCCACAAAAG 57.507 29.630 6.97 0.00 37.51 2.27
2464 12930 9.487790 GAAAAATGATCAATTTACCTCCACAAA 57.512 29.630 9.13 0.00 37.51 2.83
2465 12931 8.646004 TGAAAAATGATCAATTTACCTCCACAA 58.354 29.630 9.13 0.00 37.51 3.33
2468 12934 8.306038 CACTGAAAAATGATCAATTTACCTCCA 58.694 33.333 9.13 3.30 37.51 3.86
2469 12935 7.276438 GCACTGAAAAATGATCAATTTACCTCC 59.724 37.037 9.13 0.00 37.51 4.30
2489 13358 5.765176 CTCATCTTTGTCATTTTGCACTGA 58.235 37.500 0.00 0.00 0.00 3.41
2490 13359 4.384846 GCTCATCTTTGTCATTTTGCACTG 59.615 41.667 0.00 0.00 0.00 3.66
2491 13360 4.553323 GCTCATCTTTGTCATTTTGCACT 58.447 39.130 0.00 0.00 0.00 4.40
2544 13418 3.197766 CCTTCCAGCACCTATGTTGTAGA 59.802 47.826 0.00 0.00 35.38 2.59
2549 13423 3.806949 TTTCCTTCCAGCACCTATGTT 57.193 42.857 0.00 0.00 0.00 2.71
2575 13449 4.388773 CCTTACGTTACTTTTCCCGTTACC 59.611 45.833 0.00 0.00 34.95 2.85
2576 13450 4.988540 ACCTTACGTTACTTTTCCCGTTAC 59.011 41.667 0.00 0.00 34.95 2.50
2577 13451 5.208463 ACCTTACGTTACTTTTCCCGTTA 57.792 39.130 0.00 0.00 34.95 3.18
2578 13452 4.071961 ACCTTACGTTACTTTTCCCGTT 57.928 40.909 0.00 0.00 34.95 4.44
2580 13454 3.809279 ACAACCTTACGTTACTTTTCCCG 59.191 43.478 0.00 0.00 31.77 5.14
2583 13458 7.376866 GCCTTTTACAACCTTACGTTACTTTTC 59.623 37.037 0.00 0.00 31.77 2.29
2586 13461 5.050159 CGCCTTTTACAACCTTACGTTACTT 60.050 40.000 0.00 0.00 31.77 2.24
2593 13468 3.140623 TGGTCGCCTTTTACAACCTTAC 58.859 45.455 0.00 0.00 0.00 2.34
2598 13473 3.058708 GGTACTTGGTCGCCTTTTACAAC 60.059 47.826 0.00 0.00 0.00 3.32
2611 13486 2.045340 GCATGCCGGGTACTTGGT 60.045 61.111 6.36 0.00 0.00 3.67
2632 13507 5.049818 GTCATATTCCGATTCTGCCAAAGAG 60.050 44.000 0.00 0.00 35.91 2.85
2641 13516 7.338710 TGAAAAAGGAGTCATATTCCGATTCT 58.661 34.615 0.00 0.00 39.77 2.40
2669 13544 5.930569 ACCTTTTACAAAGACTAGCTTACGG 59.069 40.000 0.00 0.00 35.24 4.02
2670 13545 6.643770 TCACCTTTTACAAAGACTAGCTTACG 59.356 38.462 0.00 0.00 35.24 3.18
2671 13546 7.958053 TCACCTTTTACAAAGACTAGCTTAC 57.042 36.000 0.00 0.00 35.24 2.34
2672 13547 8.372459 TGATCACCTTTTACAAAGACTAGCTTA 58.628 33.333 0.00 0.00 35.24 3.09
2673 13548 7.224297 TGATCACCTTTTACAAAGACTAGCTT 58.776 34.615 0.00 0.00 38.88 3.74
2675 13550 7.119846 ACATGATCACCTTTTACAAAGACTAGC 59.880 37.037 0.00 0.00 0.00 3.42
2676 13551 8.553459 ACATGATCACCTTTTACAAAGACTAG 57.447 34.615 0.00 0.00 0.00 2.57
2678 13553 8.918202 TTACATGATCACCTTTTACAAAGACT 57.082 30.769 0.00 0.00 0.00 3.24
2679 13554 8.784043 ACTTACATGATCACCTTTTACAAAGAC 58.216 33.333 0.00 0.00 0.00 3.01
2680 13555 8.918202 ACTTACATGATCACCTTTTACAAAGA 57.082 30.769 0.00 0.00 0.00 2.52
2745 13694 6.600427 TGTATTAGTCTATGACAGTGTCGGAA 59.400 38.462 18.17 1.35 34.95 4.30
2746 13695 6.037940 GTGTATTAGTCTATGACAGTGTCGGA 59.962 42.308 18.17 12.83 34.95 4.55
2747 13696 6.183360 TGTGTATTAGTCTATGACAGTGTCGG 60.183 42.308 18.17 10.84 34.95 4.79
2748 13697 6.687531 GTGTGTATTAGTCTATGACAGTGTCG 59.312 42.308 18.17 4.63 34.95 4.35
2749 13698 7.763356 AGTGTGTATTAGTCTATGACAGTGTC 58.237 38.462 16.68 16.68 34.60 3.67
2750 13699 7.704578 AGTGTGTATTAGTCTATGACAGTGT 57.295 36.000 0.00 0.00 34.60 3.55
2751 13700 7.858382 GCTAGTGTGTATTAGTCTATGACAGTG 59.142 40.741 0.46 0.00 34.60 3.66
2752 13701 7.776030 AGCTAGTGTGTATTAGTCTATGACAGT 59.224 37.037 0.46 0.00 34.60 3.55
2754 13703 8.521170 AAGCTAGTGTGTATTAGTCTATGACA 57.479 34.615 0.00 0.00 34.60 3.58
2762 13711 9.998106 CCCAAATATAAGCTAGTGTGTATTAGT 57.002 33.333 0.00 0.00 0.00 2.24
2763 13712 8.936864 GCCCAAATATAAGCTAGTGTGTATTAG 58.063 37.037 0.00 0.00 0.00 1.73
2764 13713 8.656806 AGCCCAAATATAAGCTAGTGTGTATTA 58.343 33.333 0.00 0.00 32.73 0.98
2765 13714 7.518188 AGCCCAAATATAAGCTAGTGTGTATT 58.482 34.615 0.00 0.00 32.73 1.89
2768 13717 5.373812 AGCCCAAATATAAGCTAGTGTGT 57.626 39.130 0.00 0.00 32.73 3.72
2769 13718 5.590259 ACAAGCCCAAATATAAGCTAGTGTG 59.410 40.000 0.00 0.00 34.49 3.82
2770 13719 5.755849 ACAAGCCCAAATATAAGCTAGTGT 58.244 37.500 0.00 0.00 34.49 3.55
2771 13720 5.239525 GGACAAGCCCAAATATAAGCTAGTG 59.760 44.000 0.00 0.00 34.49 2.74
2814 13867 5.624159 TGGCCTGGACAATATTTGAGATAG 58.376 41.667 0.00 0.00 0.00 2.08
2816 13869 4.166725 TCTGGCCTGGACAATATTTGAGAT 59.833 41.667 2.64 0.00 0.00 2.75
2818 13871 3.889815 TCTGGCCTGGACAATATTTGAG 58.110 45.455 2.64 0.00 0.00 3.02
2819 13872 4.524802 ATCTGGCCTGGACAATATTTGA 57.475 40.909 2.64 0.00 0.00 2.69
2820 13873 5.361857 AGAAATCTGGCCTGGACAATATTTG 59.638 40.000 21.21 2.97 0.00 2.32
2822 13875 5.134725 AGAAATCTGGCCTGGACAATATT 57.865 39.130 2.64 3.70 0.00 1.28
2823 13876 4.803329 AGAAATCTGGCCTGGACAATAT 57.197 40.909 2.64 0.00 0.00 1.28
2828 13884 1.283321 AGGAAGAAATCTGGCCTGGAC 59.717 52.381 10.07 0.00 32.45 4.02
2862 13918 1.817099 GATGGAGCTCTTGCGTGGG 60.817 63.158 14.64 0.00 45.42 4.61
2889 13945 8.525316 GGGGTTATATTCCTTTTCGAAAAGAAA 58.475 33.333 39.33 31.50 46.39 2.52
2890 13946 7.123098 GGGGGTTATATTCCTTTTCGAAAAGAA 59.877 37.037 39.33 31.04 46.39 2.52
2891 13947 6.604396 GGGGGTTATATTCCTTTTCGAAAAGA 59.396 38.462 39.33 26.57 46.39 2.52
2892 13948 6.459161 CGGGGGTTATATTCCTTTTCGAAAAG 60.459 42.308 33.84 33.84 43.82 2.27
2893 13949 5.357596 CGGGGGTTATATTCCTTTTCGAAAA 59.642 40.000 21.35 21.35 0.00 2.29
2894 13950 4.883006 CGGGGGTTATATTCCTTTTCGAAA 59.117 41.667 6.47 6.47 0.00 3.46
2895 13951 4.453751 CGGGGGTTATATTCCTTTTCGAA 58.546 43.478 0.00 0.00 0.00 3.71
2896 13952 3.181452 CCGGGGGTTATATTCCTTTTCGA 60.181 47.826 0.00 0.00 0.00 3.71
2897 13953 3.143728 CCGGGGGTTATATTCCTTTTCG 58.856 50.000 0.00 0.00 0.00 3.46
2898 13954 2.889045 GCCGGGGGTTATATTCCTTTTC 59.111 50.000 2.18 0.00 0.00 2.29
2899 13955 2.425247 GGCCGGGGGTTATATTCCTTTT 60.425 50.000 2.18 0.00 0.00 2.27
2900 13956 1.146359 GGCCGGGGGTTATATTCCTTT 59.854 52.381 2.18 0.00 0.00 3.11
2901 13957 0.775542 GGCCGGGGGTTATATTCCTT 59.224 55.000 2.18 0.00 0.00 3.36
2902 13958 0.104090 AGGCCGGGGGTTATATTCCT 60.104 55.000 2.18 0.00 0.00 3.36
2903 13959 0.327259 GAGGCCGGGGGTTATATTCC 59.673 60.000 2.18 0.00 0.00 3.01
2904 13960 1.359168 AGAGGCCGGGGGTTATATTC 58.641 55.000 2.18 0.00 0.00 1.75
2905 13961 2.263545 GTAGAGGCCGGGGGTTATATT 58.736 52.381 2.18 0.00 0.00 1.28
2906 13962 1.150560 TGTAGAGGCCGGGGGTTATAT 59.849 52.381 2.18 0.00 0.00 0.86
2907 13963 0.562177 TGTAGAGGCCGGGGGTTATA 59.438 55.000 2.18 0.00 0.00 0.98
2908 13964 0.104620 ATGTAGAGGCCGGGGGTTAT 60.105 55.000 2.18 0.00 0.00 1.89
2909 13965 0.761702 GATGTAGAGGCCGGGGGTTA 60.762 60.000 2.18 0.00 0.00 2.85
2910 13966 2.042261 ATGTAGAGGCCGGGGGTT 59.958 61.111 2.18 0.00 0.00 4.11
2911 13967 2.446036 GATGTAGAGGCCGGGGGT 60.446 66.667 2.18 0.00 0.00 4.95
2912 13968 2.044806 CTTGATGTAGAGGCCGGGGG 62.045 65.000 2.18 0.00 0.00 5.40
2913 13969 1.447643 CTTGATGTAGAGGCCGGGG 59.552 63.158 2.18 0.00 0.00 5.73
2914 13970 1.227674 GCTTGATGTAGAGGCCGGG 60.228 63.158 2.18 0.00 0.00 5.73
2915 13971 1.592669 CGCTTGATGTAGAGGCCGG 60.593 63.158 0.00 0.00 0.00 6.13
2916 13972 1.592669 CCGCTTGATGTAGAGGCCG 60.593 63.158 0.00 0.00 0.00 6.13
2917 13973 0.811616 CACCGCTTGATGTAGAGGCC 60.812 60.000 0.00 0.00 38.53 5.19
2918 13974 1.432270 GCACCGCTTGATGTAGAGGC 61.432 60.000 0.00 0.00 38.53 4.70
2919 13975 0.108186 TGCACCGCTTGATGTAGAGG 60.108 55.000 0.00 0.00 40.53 3.69
2920 13976 1.002366 GTGCACCGCTTGATGTAGAG 58.998 55.000 5.22 0.00 0.00 2.43
2921 13977 0.320050 TGTGCACCGCTTGATGTAGA 59.680 50.000 15.69 0.00 0.00 2.59
2922 13978 0.443869 GTGTGCACCGCTTGATGTAG 59.556 55.000 15.69 0.00 0.00 2.74
2923 13979 0.250081 TGTGTGCACCGCTTGATGTA 60.250 50.000 15.69 0.00 0.00 2.29
2924 13980 1.100463 TTGTGTGCACCGCTTGATGT 61.100 50.000 15.69 0.00 0.00 3.06
2925 13981 0.241749 ATTGTGTGCACCGCTTGATG 59.758 50.000 15.69 0.00 0.00 3.07
2926 13982 0.523072 GATTGTGTGCACCGCTTGAT 59.477 50.000 15.69 0.00 0.00 2.57
2927 13983 0.817229 TGATTGTGTGCACCGCTTGA 60.817 50.000 15.69 0.00 0.00 3.02
2928 13984 0.241749 ATGATTGTGTGCACCGCTTG 59.758 50.000 15.69 0.00 0.00 4.01
2929 13985 0.961019 AATGATTGTGTGCACCGCTT 59.039 45.000 15.69 0.00 0.00 4.68
2930 13986 0.961019 AAATGATTGTGTGCACCGCT 59.039 45.000 15.69 0.00 0.00 5.52
2931 13987 1.782044 AAAATGATTGTGTGCACCGC 58.218 45.000 15.69 8.01 0.00 5.68
2932 13988 7.754069 ATAATAAAAATGATTGTGTGCACCG 57.246 32.000 15.69 0.00 0.00 4.94
2951 14007 9.639601 CGTCAGGTTCTGCTGAATAATATAATA 57.360 33.333 9.40 0.00 34.40 0.98
2952 14008 8.150945 ACGTCAGGTTCTGCTGAATAATATAAT 58.849 33.333 9.40 0.00 34.40 1.28
2953 14009 7.497595 ACGTCAGGTTCTGCTGAATAATATAA 58.502 34.615 9.40 0.00 34.40 0.98
2954 14010 7.050970 ACGTCAGGTTCTGCTGAATAATATA 57.949 36.000 9.40 0.00 34.40 0.86
2955 14011 5.918608 ACGTCAGGTTCTGCTGAATAATAT 58.081 37.500 9.40 0.00 34.40 1.28
2956 14012 5.105513 TGACGTCAGGTTCTGCTGAATAATA 60.106 40.000 15.76 0.00 34.40 0.98
2957 14013 4.184629 GACGTCAGGTTCTGCTGAATAAT 58.815 43.478 11.55 0.00 34.40 1.28
2958 14014 3.006430 TGACGTCAGGTTCTGCTGAATAA 59.994 43.478 15.76 0.00 34.40 1.40
2959 14015 2.560981 TGACGTCAGGTTCTGCTGAATA 59.439 45.455 15.76 0.00 34.40 1.75
2960 14016 1.344438 TGACGTCAGGTTCTGCTGAAT 59.656 47.619 15.76 0.00 34.40 2.57
2961 14017 0.750249 TGACGTCAGGTTCTGCTGAA 59.250 50.000 15.76 1.33 0.00 3.02
2962 14018 0.032130 GTGACGTCAGGTTCTGCTGA 59.968 55.000 20.73 0.00 0.00 4.26
2963 14019 0.249447 TGTGACGTCAGGTTCTGCTG 60.249 55.000 20.73 0.00 0.00 4.41
2964 14020 0.464036 TTGTGACGTCAGGTTCTGCT 59.536 50.000 20.73 0.00 0.00 4.24
2965 14021 0.861837 CTTGTGACGTCAGGTTCTGC 59.138 55.000 20.73 5.76 0.00 4.26
2966 14022 2.225068 ACTTGTGACGTCAGGTTCTG 57.775 50.000 20.73 8.73 0.00 3.02
2967 14023 2.691526 TGTACTTGTGACGTCAGGTTCT 59.308 45.455 20.73 3.21 0.00 3.01
2968 14024 3.088194 TGTACTTGTGACGTCAGGTTC 57.912 47.619 20.73 15.36 0.00 3.62
2969 14025 3.390135 CATGTACTTGTGACGTCAGGTT 58.610 45.455 20.73 6.31 0.00 3.50
2970 14026 2.288825 CCATGTACTTGTGACGTCAGGT 60.289 50.000 20.73 19.18 0.00 4.00
2971 14027 2.029380 TCCATGTACTTGTGACGTCAGG 60.029 50.000 20.73 13.26 0.00 3.86
2972 14028 3.297830 TCCATGTACTTGTGACGTCAG 57.702 47.619 20.73 10.30 0.00 3.51
2973 14029 3.953712 ATCCATGTACTTGTGACGTCA 57.046 42.857 15.76 15.76 0.00 4.35
2974 14030 5.063060 GGTTTATCCATGTACTTGTGACGTC 59.937 44.000 9.11 9.11 35.97 4.34
2975 14031 4.933400 GGTTTATCCATGTACTTGTGACGT 59.067 41.667 7.86 0.00 35.97 4.34
2976 14032 5.175859 AGGTTTATCCATGTACTTGTGACG 58.824 41.667 7.86 0.00 39.02 4.35
2977 14033 8.556213 TTTAGGTTTATCCATGTACTTGTGAC 57.444 34.615 7.86 0.24 39.02 3.67
2978 14034 7.335924 GCTTTAGGTTTATCCATGTACTTGTGA 59.664 37.037 7.86 5.48 39.02 3.58
2979 14035 7.415206 GGCTTTAGGTTTATCCATGTACTTGTG 60.415 40.741 7.86 0.60 39.02 3.33
2980 14036 6.602009 GGCTTTAGGTTTATCCATGTACTTGT 59.398 38.462 7.86 0.00 39.02 3.16
2981 14037 6.601613 TGGCTTTAGGTTTATCCATGTACTTG 59.398 38.462 1.78 1.78 39.02 3.16
2982 14038 6.602009 GTGGCTTTAGGTTTATCCATGTACTT 59.398 38.462 0.00 0.00 39.02 2.24
2983 14039 6.120220 GTGGCTTTAGGTTTATCCATGTACT 58.880 40.000 0.00 0.00 39.02 2.73
2984 14040 5.298527 GGTGGCTTTAGGTTTATCCATGTAC 59.701 44.000 0.00 0.00 39.02 2.90
2985 14041 5.192923 AGGTGGCTTTAGGTTTATCCATGTA 59.807 40.000 0.00 0.00 39.02 2.29
2986 14042 4.017499 AGGTGGCTTTAGGTTTATCCATGT 60.017 41.667 0.00 0.00 39.02 3.21
2987 14043 4.536765 AGGTGGCTTTAGGTTTATCCATG 58.463 43.478 0.00 0.00 39.02 3.66
2988 14044 4.881157 AGGTGGCTTTAGGTTTATCCAT 57.119 40.909 0.00 0.00 39.02 3.41
2989 14045 4.569015 GGAAGGTGGCTTTAGGTTTATCCA 60.569 45.833 0.00 0.00 39.02 3.41
2990 14046 3.952323 GGAAGGTGGCTTTAGGTTTATCC 59.048 47.826 0.00 0.00 0.00 2.59
2991 14047 4.640647 CAGGAAGGTGGCTTTAGGTTTATC 59.359 45.833 0.00 0.00 0.00 1.75
2992 14048 4.569865 CCAGGAAGGTGGCTTTAGGTTTAT 60.570 45.833 0.00 0.00 0.00 1.40
2993 14049 3.245122 CCAGGAAGGTGGCTTTAGGTTTA 60.245 47.826 0.00 0.00 0.00 2.01
2994 14050 2.490902 CCAGGAAGGTGGCTTTAGGTTT 60.491 50.000 0.00 0.00 0.00 3.27
2995 14051 1.075536 CCAGGAAGGTGGCTTTAGGTT 59.924 52.381 0.00 0.00 0.00 3.50
2996 14052 0.698818 CCAGGAAGGTGGCTTTAGGT 59.301 55.000 0.00 0.00 0.00 3.08
2997 14053 3.577389 CCAGGAAGGTGGCTTTAGG 57.423 57.895 0.00 0.00 0.00 2.69
3004 14060 0.251297 TGTGATTGCCAGGAAGGTGG 60.251 55.000 0.00 0.00 40.61 4.61
3005 14061 1.171308 CTGTGATTGCCAGGAAGGTG 58.829 55.000 0.00 0.00 40.61 4.00
3006 14062 0.773644 ACTGTGATTGCCAGGAAGGT 59.226 50.000 0.00 0.00 40.61 3.50
3007 14063 1.457346 GACTGTGATTGCCAGGAAGG 58.543 55.000 0.00 0.00 41.84 3.46
3008 14064 1.081892 CGACTGTGATTGCCAGGAAG 58.918 55.000 0.00 0.00 34.16 3.46
3009 14065 0.955428 GCGACTGTGATTGCCAGGAA 60.955 55.000 0.00 0.00 34.16 3.36
3010 14066 1.375908 GCGACTGTGATTGCCAGGA 60.376 57.895 0.00 0.00 34.16 3.86
3011 14067 0.108186 TAGCGACTGTGATTGCCAGG 60.108 55.000 0.00 0.00 34.16 4.45
3012 14068 1.002366 GTAGCGACTGTGATTGCCAG 58.998 55.000 0.00 0.00 36.01 4.85
3013 14069 3.137484 GTAGCGACTGTGATTGCCA 57.863 52.632 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.