Multiple sequence alignment - TraesCS5D01G536100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G536100 chr5D 100.000 5973 0 0 1 5973 549636375 549630403 0.000000e+00 11031.0
1 TraesCS5D01G536100 chr4A 94.352 2054 101 12 2656 4706 621172933 621170892 0.000000e+00 3136.0
2 TraesCS5D01G536100 chr4A 86.541 691 45 24 1142 1799 621174599 621173924 0.000000e+00 717.0
3 TraesCS5D01G536100 chr4A 89.725 545 24 11 4778 5313 621170658 621170137 0.000000e+00 667.0
4 TraesCS5D01G536100 chr4A 90.438 502 41 5 5476 5972 621170047 621169548 0.000000e+00 654.0
5 TraesCS5D01G536100 chr4A 93.534 232 14 1 2380 2611 621173159 621172929 1.590000e-90 344.0
6 TraesCS5D01G536100 chr4A 96.552 58 1 1 5392 5448 621170107 621170050 1.770000e-15 95.3
7 TraesCS5D01G536100 chr4A 82.301 113 12 7 981 1087 621174717 621174607 2.290000e-14 91.6
8 TraesCS5D01G536100 chr5B 92.089 2149 109 29 2621 4718 701176896 701174758 0.000000e+00 2970.0
9 TraesCS5D01G536100 chr5B 89.733 1237 85 15 4743 5973 701174658 701173458 0.000000e+00 1543.0
10 TraesCS5D01G536100 chr5B 90.633 758 55 8 5229 5973 680713320 680714074 0.000000e+00 992.0
11 TraesCS5D01G536100 chr5B 84.195 329 22 13 793 1101 701178282 701177964 5.860000e-75 292.0
12 TraesCS5D01G536100 chr5B 88.718 195 21 1 1 194 701180368 701180174 2.780000e-58 237.0
13 TraesCS5D01G536100 chr5B 78.711 357 46 18 981 1335 125380179 125379851 1.690000e-50 211.0
14 TraesCS5D01G536100 chr5B 80.412 291 33 11 1245 1526 701177257 701176982 3.650000e-47 200.0
15 TraesCS5D01G536100 chr7B 91.138 756 53 8 5229 5973 192092548 192093300 0.000000e+00 1013.0
16 TraesCS5D01G536100 chr7B 90.646 759 54 8 5229 5973 644535247 644536002 0.000000e+00 992.0
17 TraesCS5D01G536100 chr7B 79.272 357 44 20 981 1335 486367326 486366998 7.790000e-54 222.0
18 TraesCS5D01G536100 chr6A 90.119 759 58 8 5229 5973 479107676 479106921 0.000000e+00 970.0
19 TraesCS5D01G536100 chr3B 91.924 421 26 3 5229 5642 799005229 799005648 3.100000e-162 582.0
20 TraesCS5D01G536100 chr3B 88.462 208 18 4 5770 5973 799005649 799005854 4.620000e-61 246.0
21 TraesCS5D01G536100 chr3A 78.652 623 92 29 986 1604 257622864 257623449 5.650000e-100 375.0
22 TraesCS5D01G536100 chr3A 85.915 284 28 3 3088 3366 735348043 735348319 5.860000e-75 292.0
23 TraesCS5D01G536100 chr3A 87.449 247 25 2 3088 3334 735345383 735345623 4.560000e-71 279.0
24 TraesCS5D01G536100 chr3A 78.992 357 45 18 981 1335 33457753 33457425 3.630000e-52 217.0
25 TraesCS5D01G536100 chr7A 79.832 357 43 16 981 1335 648163445 648163116 3.600000e-57 233.0
26 TraesCS5D01G536100 chr1A 79.272 357 44 17 981 1335 532424713 532424385 7.790000e-54 222.0
27 TraesCS5D01G536100 chr1B 78.992 357 46 17 981 1335 546915131 546914802 3.630000e-52 217.0
28 TraesCS5D01G536100 chr1B 78.711 357 46 18 981 1335 656878630 656878958 1.690000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G536100 chr5D 549630403 549636375 5972 True 11031.000000 11031 100.000000 1 5973 1 chr5D.!!$R1 5972
1 TraesCS5D01G536100 chr4A 621169548 621174717 5169 True 814.985714 3136 90.491857 981 5972 7 chr4A.!!$R1 4991
2 TraesCS5D01G536100 chr5B 701173458 701180368 6910 True 1048.400000 2970 87.029400 1 5973 5 chr5B.!!$R2 5972
3 TraesCS5D01G536100 chr5B 680713320 680714074 754 False 992.000000 992 90.633000 5229 5973 1 chr5B.!!$F1 744
4 TraesCS5D01G536100 chr7B 192092548 192093300 752 False 1013.000000 1013 91.138000 5229 5973 1 chr7B.!!$F1 744
5 TraesCS5D01G536100 chr7B 644535247 644536002 755 False 992.000000 992 90.646000 5229 5973 1 chr7B.!!$F2 744
6 TraesCS5D01G536100 chr6A 479106921 479107676 755 True 970.000000 970 90.119000 5229 5973 1 chr6A.!!$R1 744
7 TraesCS5D01G536100 chr3B 799005229 799005854 625 False 414.000000 582 90.193000 5229 5973 2 chr3B.!!$F1 744
8 TraesCS5D01G536100 chr3A 257622864 257623449 585 False 375.000000 375 78.652000 986 1604 1 chr3A.!!$F1 618
9 TraesCS5D01G536100 chr3A 735345383 735348319 2936 False 285.500000 292 86.682000 3088 3366 2 chr3A.!!$F2 278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 2088 0.032678 CATGGATTCCTCTCCCGTCG 59.967 60.0 3.95 0.0 34.12 5.12 F
885 2239 0.034089 CAATCCACCCTTGTCCCCTC 60.034 60.0 0.00 0.0 0.00 4.30 F
1239 3217 0.108585 TTCTTTGTTCCTGCTCGCCT 59.891 50.0 0.00 0.0 0.00 5.52 F
1867 3881 0.603707 CCAGTGTGTGGTGGTAGCAG 60.604 60.0 0.00 0.0 42.17 4.24 F
3233 8300 0.596577 ACTAGCAAGCTTGTCGACGA 59.403 50.0 26.55 8.4 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 3724 1.066757 GCTAGTACCGGCCAGTAGTTC 59.933 57.143 11.74 1.67 0.0 3.01 R
2844 5212 1.165270 CACCGACAAGATTTCCACCC 58.835 55.000 0.00 0.00 0.0 4.61 R
3009 5414 7.647907 ATTTACAAAGCAGCTCAAGAAAATG 57.352 32.000 0.00 0.00 0.0 2.32 R
3380 8452 1.186200 TGGGGACACGAATGAGAGAG 58.814 55.000 0.00 0.00 33.4 3.20 R
5015 10354 0.326264 AATGGTGTGGAGTGAGGAGC 59.674 55.000 0.00 0.00 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.864114 CGGAGGTCGTCACTTAGGA 58.136 57.895 0.00 0.00 0.00 2.94
34 35 3.444388 GTCGTCACTTAGGACTCCTTCAT 59.556 47.826 1.94 0.00 39.42 2.57
44 45 1.760029 GACTCCTTCATCCTCCTGGTC 59.240 57.143 0.00 0.00 34.23 4.02
54 55 4.162320 TCATCCTCCTGGTCTTCATTGTAC 59.838 45.833 0.00 0.00 34.23 2.90
63 64 5.977635 TGGTCTTCATTGTACCTGTATGAG 58.022 41.667 0.00 0.00 34.23 2.90
68 69 6.763135 TCTTCATTGTACCTGTATGAGCATTC 59.237 38.462 0.00 0.00 30.64 2.67
73 74 6.538945 TGTACCTGTATGAGCATTCTTACA 57.461 37.500 0.00 0.00 39.96 2.41
75 76 7.564793 TGTACCTGTATGAGCATTCTTACAAT 58.435 34.615 0.00 0.08 40.99 2.71
139 141 5.504173 GCATCACACATCAGAGATCAACATG 60.504 44.000 0.00 0.00 0.00 3.21
148 150 6.780457 TCAGAGATCAACATGTAGATCACA 57.220 37.500 0.00 0.00 42.36 3.58
158 160 6.582677 ACATGTAGATCACAGACTATAGGC 57.417 41.667 0.00 0.00 41.51 3.93
198 200 3.258123 CCATTTGGGAGTTTGATTTCCGT 59.742 43.478 0.00 0.00 40.01 4.69
213 377 5.705441 TGATTTCCGTATGACTTTGCTCTTT 59.295 36.000 0.00 0.00 0.00 2.52
219 383 2.057137 TGACTTTGCTCTTTGCTGGT 57.943 45.000 0.00 0.00 43.37 4.00
220 384 3.207265 TGACTTTGCTCTTTGCTGGTA 57.793 42.857 0.00 0.00 43.37 3.25
228 392 4.592942 TGCTCTTTGCTGGTATGATCTTT 58.407 39.130 0.00 0.00 43.37 2.52
237 401 5.178797 GCTGGTATGATCTTTAGTGTGTGT 58.821 41.667 0.00 0.00 0.00 3.72
248 412 2.411628 AGTGTGTGTTAGTGTTGGCA 57.588 45.000 0.00 0.00 0.00 4.92
271 435 7.348201 GCAGTGTGCATTCTAATTATGTAGAC 58.652 38.462 0.00 0.00 44.26 2.59
275 439 7.010183 GTGTGCATTCTAATTATGTAGACGTGT 59.990 37.037 0.00 0.00 29.70 4.49
277 441 7.010183 GTGCATTCTAATTATGTAGACGTGTGT 59.990 37.037 0.00 0.00 29.70 3.72
278 442 7.010091 TGCATTCTAATTATGTAGACGTGTGTG 59.990 37.037 0.00 0.00 29.70 3.82
279 443 7.222031 GCATTCTAATTATGTAGACGTGTGTGA 59.778 37.037 0.00 0.00 29.70 3.58
280 444 8.746751 CATTCTAATTATGTAGACGTGTGTGAG 58.253 37.037 0.00 0.00 29.70 3.51
281 445 7.619964 TCTAATTATGTAGACGTGTGTGAGA 57.380 36.000 0.00 0.00 0.00 3.27
282 446 8.047413 TCTAATTATGTAGACGTGTGTGAGAA 57.953 34.615 0.00 0.00 0.00 2.87
285 1615 2.739292 TGTAGACGTGTGTGAGAAAGC 58.261 47.619 0.00 0.00 0.00 3.51
296 1626 6.311445 CGTGTGTGAGAAAGCAAATCTATACT 59.689 38.462 0.00 0.00 0.00 2.12
298 1628 7.331934 GTGTGTGAGAAAGCAAATCTATACTCA 59.668 37.037 0.00 0.00 0.00 3.41
309 1646 3.752412 TCTATACTCAACACGTGTCCG 57.248 47.619 23.61 16.34 40.83 4.79
312 1649 0.386476 TACTCAACACGTGTCCGCTT 59.614 50.000 23.61 2.14 37.70 4.68
335 1672 1.535462 CCGGTCCTGACAACATGTTTC 59.465 52.381 8.77 10.55 0.00 2.78
339 1676 4.202010 CGGTCCTGACAACATGTTTCTTTT 60.202 41.667 8.77 0.00 0.00 2.27
340 1677 5.660460 GGTCCTGACAACATGTTTCTTTTT 58.340 37.500 8.77 0.00 0.00 1.94
364 1701 8.950208 TTTCCATTTATTTCCGTTTCTTGTTT 57.050 26.923 0.00 0.00 0.00 2.83
402 1739 9.858247 CACATGTGATTTTCTTCTTTTCATTTG 57.142 29.630 21.64 0.00 0.00 2.32
403 1740 9.603921 ACATGTGATTTTCTTCTTTTCATTTGT 57.396 25.926 0.00 0.00 0.00 2.83
466 1803 2.771089 TGGCACACATGAGAAACTCTC 58.229 47.619 0.00 0.00 43.65 3.20
485 1822 6.578023 ACTCTCCTCAAATGTATGAGCTTAC 58.422 40.000 0.00 0.00 44.43 2.34
486 1823 6.382570 ACTCTCCTCAAATGTATGAGCTTACT 59.617 38.462 0.00 0.00 44.43 2.24
526 1865 7.675062 TGCATTTATTTTCCTTATTGTGTGGT 58.325 30.769 0.00 0.00 0.00 4.16
537 1877 8.472007 TCCTTATTGTGTGGTAAGATTGTTTT 57.528 30.769 0.00 0.00 31.15 2.43
563 1903 7.693969 AATAAGAGGTGAAGAATTGTTCTGG 57.306 36.000 15.57 0.00 40.59 3.86
565 1905 5.511386 AGAGGTGAAGAATTGTTCTGGAT 57.489 39.130 15.57 0.75 40.59 3.41
567 1907 7.205515 AGAGGTGAAGAATTGTTCTGGATAT 57.794 36.000 15.57 0.00 40.59 1.63
568 1908 8.324191 AGAGGTGAAGAATTGTTCTGGATATA 57.676 34.615 15.57 0.00 40.59 0.86
569 1909 8.943085 AGAGGTGAAGAATTGTTCTGGATATAT 58.057 33.333 15.57 0.00 40.59 0.86
570 1910 8.915057 AGGTGAAGAATTGTTCTGGATATATG 57.085 34.615 15.57 0.00 40.59 1.78
571 1911 8.717717 AGGTGAAGAATTGTTCTGGATATATGA 58.282 33.333 15.57 0.00 40.59 2.15
572 1912 9.512588 GGTGAAGAATTGTTCTGGATATATGAT 57.487 33.333 15.57 0.00 40.59 2.45
580 1920 8.694581 TTGTTCTGGATATATGATCATTTGCA 57.305 30.769 14.65 9.78 0.00 4.08
587 1927 9.962809 TGGATATATGATCATTTGCATTCAGTA 57.037 29.630 14.65 0.00 0.00 2.74
601 1941 4.327898 GCATTCAGTACCATGCATGTTTTG 59.672 41.667 24.58 16.24 44.49 2.44
613 1953 8.526978 ACCATGCATGTTTTGTTGTGTATTATA 58.473 29.630 24.58 0.00 0.00 0.98
614 1954 9.531942 CCATGCATGTTTTGTTGTGTATTATAT 57.468 29.630 24.58 0.00 0.00 0.86
617 1957 9.786105 TGCATGTTTTGTTGTGTATTATATGAG 57.214 29.630 0.00 0.00 0.00 2.90
642 1982 9.205513 AGTTTTCCCTGATTATTATCAAGCAAT 57.794 29.630 0.00 0.00 40.17 3.56
716 2069 4.976224 AAAAATACGTGAGGTAATGGCC 57.024 40.909 0.00 0.00 34.09 5.36
717 2070 3.637911 AAATACGTGAGGTAATGGCCA 57.362 42.857 8.56 8.56 34.09 5.36
718 2071 3.857157 AATACGTGAGGTAATGGCCAT 57.143 42.857 14.09 14.09 34.09 4.40
719 2072 2.613026 TACGTGAGGTAATGGCCATG 57.387 50.000 21.63 6.43 0.00 3.66
720 2073 0.107214 ACGTGAGGTAATGGCCATGG 60.107 55.000 21.63 7.63 0.00 3.66
721 2074 0.180171 CGTGAGGTAATGGCCATGGA 59.820 55.000 21.63 7.88 0.00 3.41
722 2075 1.202806 CGTGAGGTAATGGCCATGGAT 60.203 52.381 21.63 6.28 0.00 3.41
723 2076 2.749466 CGTGAGGTAATGGCCATGGATT 60.749 50.000 21.63 10.02 0.00 3.01
724 2077 2.887152 GTGAGGTAATGGCCATGGATTC 59.113 50.000 21.63 15.31 0.00 2.52
725 2078 2.158475 TGAGGTAATGGCCATGGATTCC 60.158 50.000 21.63 16.42 0.00 3.01
726 2079 2.108952 GAGGTAATGGCCATGGATTCCT 59.891 50.000 21.63 20.58 0.00 3.36
727 2080 2.108952 AGGTAATGGCCATGGATTCCTC 59.891 50.000 21.63 3.64 0.00 3.71
728 2081 2.108952 GGTAATGGCCATGGATTCCTCT 59.891 50.000 21.63 1.97 0.00 3.69
729 2082 2.671896 AATGGCCATGGATTCCTCTC 57.328 50.000 21.63 0.00 0.00 3.20
730 2083 0.776176 ATGGCCATGGATTCCTCTCC 59.224 55.000 20.04 4.72 35.74 3.71
731 2084 1.355718 TGGCCATGGATTCCTCTCCC 61.356 60.000 18.40 3.90 34.12 4.30
732 2085 1.072159 GCCATGGATTCCTCTCCCG 59.928 63.158 18.40 0.00 34.12 5.14
733 2086 1.700042 GCCATGGATTCCTCTCCCGT 61.700 60.000 18.40 0.00 34.12 5.28
734 2087 0.394565 CCATGGATTCCTCTCCCGTC 59.605 60.000 5.56 0.00 34.12 4.79
735 2088 0.032678 CATGGATTCCTCTCCCGTCG 59.967 60.000 3.95 0.00 34.12 5.12
736 2089 1.749334 ATGGATTCCTCTCCCGTCGC 61.749 60.000 3.95 0.00 34.12 5.19
737 2090 2.128507 GGATTCCTCTCCCGTCGCT 61.129 63.158 0.00 0.00 0.00 4.93
738 2091 1.677637 GGATTCCTCTCCCGTCGCTT 61.678 60.000 0.00 0.00 0.00 4.68
739 2092 0.175989 GATTCCTCTCCCGTCGCTTT 59.824 55.000 0.00 0.00 0.00 3.51
740 2093 0.108138 ATTCCTCTCCCGTCGCTTTG 60.108 55.000 0.00 0.00 0.00 2.77
741 2094 1.183030 TTCCTCTCCCGTCGCTTTGA 61.183 55.000 0.00 0.00 0.00 2.69
742 2095 1.153745 CCTCTCCCGTCGCTTTGAG 60.154 63.158 0.00 0.00 0.00 3.02
743 2096 1.807573 CTCTCCCGTCGCTTTGAGC 60.808 63.158 0.00 0.00 38.02 4.26
769 2122 1.226262 GGGCGAGAGAGAGAGAGGT 59.774 63.158 0.00 0.00 0.00 3.85
770 2123 0.470766 GGGCGAGAGAGAGAGAGGTA 59.529 60.000 0.00 0.00 0.00 3.08
771 2124 1.542547 GGGCGAGAGAGAGAGAGGTAG 60.543 61.905 0.00 0.00 0.00 3.18
772 2125 1.542547 GGCGAGAGAGAGAGAGGTAGG 60.543 61.905 0.00 0.00 0.00 3.18
774 2127 1.071699 CGAGAGAGAGAGAGGTAGGGG 59.928 61.905 0.00 0.00 0.00 4.79
775 2128 0.850784 AGAGAGAGAGAGGTAGGGGC 59.149 60.000 0.00 0.00 0.00 5.80
776 2129 0.178973 GAGAGAGAGAGGTAGGGGCC 60.179 65.000 0.00 0.00 0.00 5.80
777 2130 1.529713 GAGAGAGAGGTAGGGGCCG 60.530 68.421 0.00 0.00 0.00 6.13
778 2131 1.997256 GAGAGAGAGGTAGGGGCCGA 61.997 65.000 0.00 0.00 0.00 5.54
780 2133 2.279408 GAGAGGTAGGGGCCGAGT 59.721 66.667 0.00 0.00 0.00 4.18
781 2134 2.042843 AGAGGTAGGGGCCGAGTG 60.043 66.667 0.00 0.00 0.00 3.51
782 2135 3.155167 GAGGTAGGGGCCGAGTGG 61.155 72.222 0.00 0.00 38.77 4.00
783 2136 4.798682 AGGTAGGGGCCGAGTGGG 62.799 72.222 0.00 0.00 39.58 4.61
813 2166 4.424711 GCCCAGCCGGTCATCCAA 62.425 66.667 1.90 0.00 0.00 3.53
832 2185 2.044352 CGGACCCAACCCAATCCC 60.044 66.667 0.00 0.00 0.00 3.85
833 2186 2.362963 GGACCCAACCCAATCCCC 59.637 66.667 0.00 0.00 0.00 4.81
834 2187 2.553330 GGACCCAACCCAATCCCCA 61.553 63.158 0.00 0.00 0.00 4.96
835 2188 1.467432 GACCCAACCCAATCCCCAA 59.533 57.895 0.00 0.00 0.00 4.12
884 2238 1.509548 CCAATCCACCCTTGTCCCCT 61.510 60.000 0.00 0.00 0.00 4.79
885 2239 0.034089 CAATCCACCCTTGTCCCCTC 60.034 60.000 0.00 0.00 0.00 4.30
886 2240 1.562672 AATCCACCCTTGTCCCCTCG 61.563 60.000 0.00 0.00 0.00 4.63
888 2242 4.410400 CACCCTTGTCCCCTCGCC 62.410 72.222 0.00 0.00 0.00 5.54
889 2243 4.974438 ACCCTTGTCCCCTCGCCA 62.974 66.667 0.00 0.00 0.00 5.69
891 2245 2.190578 CCTTGTCCCCTCGCCATC 59.809 66.667 0.00 0.00 0.00 3.51
892 2246 2.370445 CCTTGTCCCCTCGCCATCT 61.370 63.158 0.00 0.00 0.00 2.90
894 2248 2.317149 CTTGTCCCCTCGCCATCTCC 62.317 65.000 0.00 0.00 0.00 3.71
895 2249 2.444895 GTCCCCTCGCCATCTCCT 60.445 66.667 0.00 0.00 0.00 3.69
896 2250 2.123251 TCCCCTCGCCATCTCCTC 60.123 66.667 0.00 0.00 0.00 3.71
897 2251 2.123077 CCCCTCGCCATCTCCTCT 60.123 66.667 0.00 0.00 0.00 3.69
898 2252 2.206536 CCCCTCGCCATCTCCTCTC 61.207 68.421 0.00 0.00 0.00 3.20
899 2253 2.206536 CCCTCGCCATCTCCTCTCC 61.207 68.421 0.00 0.00 0.00 3.71
900 2254 1.152567 CCTCGCCATCTCCTCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
902 2256 0.467106 CTCGCCATCTCCTCTCCTCA 60.467 60.000 0.00 0.00 0.00 3.86
903 2257 0.467106 TCGCCATCTCCTCTCCTCAG 60.467 60.000 0.00 0.00 0.00 3.35
904 2258 1.462731 CGCCATCTCCTCTCCTCAGG 61.463 65.000 0.00 0.00 34.40 3.86
905 2259 0.398381 GCCATCTCCTCTCCTCAGGT 60.398 60.000 0.00 0.00 34.76 4.00
906 2260 1.412079 CCATCTCCTCTCCTCAGGTG 58.588 60.000 0.00 0.00 34.76 4.00
908 2262 0.754957 ATCTCCTCTCCTCAGGTGCG 60.755 60.000 0.00 0.00 34.76 5.34
909 2263 3.071206 TCCTCTCCTCAGGTGCGC 61.071 66.667 0.00 0.00 34.76 6.09
910 2264 3.073735 CCTCTCCTCAGGTGCGCT 61.074 66.667 9.73 0.00 0.00 5.92
911 2265 2.493973 CTCTCCTCAGGTGCGCTC 59.506 66.667 9.73 4.47 0.00 5.03
912 2266 2.036414 TCTCCTCAGGTGCGCTCT 59.964 61.111 9.73 3.07 0.00 4.09
913 2267 2.003658 CTCTCCTCAGGTGCGCTCTC 62.004 65.000 9.73 0.00 0.00 3.20
914 2268 2.036414 TCCTCAGGTGCGCTCTCT 59.964 61.111 9.73 1.49 0.00 3.10
917 2271 1.139308 CTCAGGTGCGCTCTCTCTG 59.861 63.158 9.73 8.39 0.00 3.35
927 2281 2.757508 TCTCTCTGCTCCCCTGCG 60.758 66.667 0.00 0.00 35.36 5.18
928 2282 3.847602 CTCTCTGCTCCCCTGCGG 61.848 72.222 0.00 0.00 40.46 5.69
947 2301 1.966451 CCGGCTCAAGCTTCCGTTT 60.966 57.895 20.02 0.00 41.46 3.60
1060 2438 0.468214 CCTCCAGATCCTCTGCGGTA 60.468 60.000 0.00 0.00 42.98 4.02
1061 2439 0.671251 CTCCAGATCCTCTGCGGTAC 59.329 60.000 0.00 0.00 42.98 3.34
1094 2474 0.996762 TCCTCCTCCTCCTCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
1100 2480 0.996762 TCCTCCTCCTCTCCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
1101 2481 1.150536 CTCCTCCTCTCCCTCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
1107 2487 4.405671 TCTCCCTCTCCGTCGCGT 62.406 66.667 5.77 0.00 0.00 6.01
1116 2505 4.907034 CCGTCGCGTCCATCTCCG 62.907 72.222 5.77 0.00 0.00 4.63
1121 2510 4.933064 GCGTCCATCTCCGCTCCG 62.933 72.222 0.00 0.00 46.08 4.63
1122 2511 4.933064 CGTCCATCTCCGCTCCGC 62.933 72.222 0.00 0.00 0.00 5.54
1123 2512 4.593864 GTCCATCTCCGCTCCGCC 62.594 72.222 0.00 0.00 0.00 6.13
1138 2527 0.675522 CCGCCCGTGGATTGTTAGTT 60.676 55.000 0.00 0.00 0.00 2.24
1171 2560 3.808656 GCTCCGCTTTCTGCAGCC 61.809 66.667 9.47 0.00 43.06 4.85
1174 2563 0.391661 CTCCGCTTTCTGCAGCCTTA 60.392 55.000 9.47 0.00 43.06 2.69
1195 3173 0.671472 TTGCAGTCAGTCGCAGATGG 60.671 55.000 0.00 0.00 40.67 3.51
1218 3196 1.406069 GGGACTGACTATGTGTGCTGG 60.406 57.143 0.00 0.00 0.00 4.85
1226 3204 4.275689 TGACTATGTGTGCTGGTTTCTTTG 59.724 41.667 0.00 0.00 0.00 2.77
1228 3206 4.644685 ACTATGTGTGCTGGTTTCTTTGTT 59.355 37.500 0.00 0.00 0.00 2.83
1229 3207 3.502191 TGTGTGCTGGTTTCTTTGTTC 57.498 42.857 0.00 0.00 0.00 3.18
1230 3208 2.165437 TGTGTGCTGGTTTCTTTGTTCC 59.835 45.455 0.00 0.00 0.00 3.62
1232 3210 2.426738 TGTGCTGGTTTCTTTGTTCCTG 59.573 45.455 0.00 0.00 0.00 3.86
1233 3211 1.408702 TGCTGGTTTCTTTGTTCCTGC 59.591 47.619 0.00 0.00 42.45 4.85
1234 3212 1.683385 GCTGGTTTCTTTGTTCCTGCT 59.317 47.619 0.00 0.00 40.21 4.24
1236 3214 1.946768 TGGTTTCTTTGTTCCTGCTCG 59.053 47.619 0.00 0.00 0.00 5.03
1238 3216 0.951558 TTTCTTTGTTCCTGCTCGCC 59.048 50.000 0.00 0.00 0.00 5.54
1239 3217 0.108585 TTCTTTGTTCCTGCTCGCCT 59.891 50.000 0.00 0.00 0.00 5.52
1343 3323 0.957888 GCTTCAGGTGAGCCACTTCC 60.958 60.000 5.48 0.00 37.19 3.46
1400 3395 2.825836 GCACTTCAGCCCCCGATG 60.826 66.667 0.00 0.00 0.00 3.84
1630 3629 9.582648 AAAAAGTGTATGTACCTATTTCCAACT 57.417 29.630 0.00 0.00 0.00 3.16
1649 3648 7.786030 TCCAACTTTTGAATGACATTAACCAA 58.214 30.769 0.00 0.00 0.00 3.67
1664 3671 6.323739 ACATTAACCAAGACAACCTTCATTGT 59.676 34.615 0.00 0.00 45.52 2.71
1672 3679 5.690865 AGACAACCTTCATTGTGTTCCTTA 58.309 37.500 0.00 0.00 42.89 2.69
1675 3682 7.390718 AGACAACCTTCATTGTGTTCCTTATAC 59.609 37.037 0.00 0.00 42.89 1.47
1680 3687 6.449635 TTCATTGTGTTCCTTATACATGGC 57.550 37.500 0.00 0.00 0.00 4.40
1681 3688 4.887071 TCATTGTGTTCCTTATACATGGCC 59.113 41.667 0.00 0.00 0.00 5.36
1692 3699 1.855295 TACATGGCCTACCTGTTCGA 58.145 50.000 3.32 0.00 36.63 3.71
1703 3710 2.438411 ACCTGTTCGAAACCAAACACA 58.562 42.857 0.00 0.00 32.28 3.72
1704 3711 2.422127 ACCTGTTCGAAACCAAACACAG 59.578 45.455 0.00 0.52 32.28 3.66
1717 3724 1.527034 AACACAGCCATGCTAGTGTG 58.473 50.000 18.21 12.60 43.87 3.82
1731 3738 1.119574 AGTGTGAACTACTGGCCGGT 61.120 55.000 23.52 23.52 0.00 5.28
1754 3768 4.319177 ACTAGCAAACACAGGAGATGTTC 58.681 43.478 0.00 0.00 41.41 3.18
1756 3770 1.197721 GCAAACACAGGAGATGTTCGG 59.802 52.381 0.00 0.00 41.41 4.30
1758 3772 1.056660 AACACAGGAGATGTTCGGGT 58.943 50.000 0.00 0.00 41.41 5.28
1763 3777 3.058224 CACAGGAGATGTTCGGGTTTTTC 60.058 47.826 0.00 0.00 41.41 2.29
1767 3781 3.188667 GGAGATGTTCGGGTTTTTCAGTC 59.811 47.826 0.00 0.00 0.00 3.51
1771 3785 3.546724 TGTTCGGGTTTTTCAGTCATCA 58.453 40.909 0.00 0.00 0.00 3.07
1777 3791 3.550030 GGGTTTTTCAGTCATCAACCGTG 60.550 47.826 0.00 0.00 38.25 4.94
1780 3794 5.336744 GTTTTTCAGTCATCAACCGTGAAA 58.663 37.500 0.00 0.00 37.30 2.69
1785 3799 4.272504 TCAGTCATCAACCGTGAAAGTTTC 59.727 41.667 8.75 8.75 37.30 2.78
1787 3801 4.881850 AGTCATCAACCGTGAAAGTTTCTT 59.118 37.500 16.33 0.00 37.30 2.52
1788 3802 5.007724 AGTCATCAACCGTGAAAGTTTCTTC 59.992 40.000 16.33 8.75 37.30 2.87
1790 3804 5.588648 TCATCAACCGTGAAAGTTTCTTCTT 59.411 36.000 16.33 0.87 37.30 2.52
1791 3805 5.479716 TCAACCGTGAAAGTTTCTTCTTC 57.520 39.130 16.33 2.31 0.00 2.87
1792 3806 5.183228 TCAACCGTGAAAGTTTCTTCTTCT 58.817 37.500 16.33 0.00 0.00 2.85
1793 3807 5.646360 TCAACCGTGAAAGTTTCTTCTTCTT 59.354 36.000 16.33 0.00 0.00 2.52
1794 3808 5.736486 ACCGTGAAAGTTTCTTCTTCTTC 57.264 39.130 16.33 0.00 0.00 2.87
1795 3809 5.429130 ACCGTGAAAGTTTCTTCTTCTTCT 58.571 37.500 16.33 0.00 0.00 2.85
1796 3810 5.880887 ACCGTGAAAGTTTCTTCTTCTTCTT 59.119 36.000 16.33 0.00 0.00 2.52
1797 3811 6.037281 ACCGTGAAAGTTTCTTCTTCTTCTTC 59.963 38.462 16.33 0.00 0.00 2.87
1798 3812 6.258947 CCGTGAAAGTTTCTTCTTCTTCTTCT 59.741 38.462 16.33 0.00 0.00 2.85
1799 3813 7.201652 CCGTGAAAGTTTCTTCTTCTTCTTCTT 60.202 37.037 16.33 0.00 0.00 2.52
1800 3814 7.848539 CGTGAAAGTTTCTTCTTCTTCTTCTTC 59.151 37.037 16.33 0.00 0.00 2.87
1811 3825 8.430801 TTCTTCTTCTTCTTCTTCTTCTGTTG 57.569 34.615 0.00 0.00 0.00 3.33
1813 3827 5.674525 TCTTCTTCTTCTTCTTCTGTTGCA 58.325 37.500 0.00 0.00 0.00 4.08
1825 3839 3.701205 TCTGTTGCAGGATACACACAT 57.299 42.857 0.00 0.00 41.41 3.21
1826 3840 4.019792 TCTGTTGCAGGATACACACATT 57.980 40.909 0.00 0.00 41.41 2.71
1827 3841 5.159273 TCTGTTGCAGGATACACACATTA 57.841 39.130 0.00 0.00 41.41 1.90
1828 3842 5.555966 TCTGTTGCAGGATACACACATTAA 58.444 37.500 0.00 0.00 41.41 1.40
1829 3843 6.000840 TCTGTTGCAGGATACACACATTAAA 58.999 36.000 0.00 0.00 41.41 1.52
1830 3844 6.488344 TCTGTTGCAGGATACACACATTAAAA 59.512 34.615 0.00 0.00 41.41 1.52
1831 3845 7.013750 TCTGTTGCAGGATACACACATTAAAAA 59.986 33.333 0.00 0.00 41.41 1.94
1832 3846 7.144661 TGTTGCAGGATACACACATTAAAAAG 58.855 34.615 0.00 0.00 41.41 2.27
1833 3847 7.013750 TGTTGCAGGATACACACATTAAAAAGA 59.986 33.333 0.00 0.00 41.41 2.52
1834 3848 7.517614 TGCAGGATACACACATTAAAAAGAA 57.482 32.000 0.00 0.00 41.41 2.52
1835 3849 8.121305 TGCAGGATACACACATTAAAAAGAAT 57.879 30.769 0.00 0.00 41.41 2.40
1836 3850 8.584157 TGCAGGATACACACATTAAAAAGAATT 58.416 29.630 0.00 0.00 41.41 2.17
1837 3851 8.863049 GCAGGATACACACATTAAAAAGAATTG 58.137 33.333 0.00 0.00 41.41 2.32
1838 3852 9.912634 CAGGATACACACATTAAAAAGAATTGT 57.087 29.630 0.00 0.00 41.41 2.71
1840 3854 9.061610 GGATACACACATTAAAAAGAATTGTCG 57.938 33.333 0.00 0.00 0.00 4.35
1841 3855 9.820229 GATACACACATTAAAAAGAATTGTCGA 57.180 29.630 0.00 0.00 0.00 4.20
1844 3858 9.528018 ACACACATTAAAAAGAATTGTCGATTT 57.472 25.926 0.00 0.00 0.00 2.17
1867 3881 0.603707 CCAGTGTGTGGTGGTAGCAG 60.604 60.000 0.00 0.00 42.17 4.24
1870 3884 1.227823 TGTGTGGTGGTAGCAGTGC 60.228 57.895 7.13 7.13 0.00 4.40
1904 3979 9.365906 TCCATTTAATCACCATATACAATTGCT 57.634 29.630 5.05 0.00 0.00 3.91
1905 3980 9.985730 CCATTTAATCACCATATACAATTGCTT 57.014 29.630 5.05 0.00 0.00 3.91
1911 3986 7.701539 TCACCATATACAATTGCTTCAAAGT 57.298 32.000 5.05 0.00 0.00 2.66
1912 3987 8.121305 TCACCATATACAATTGCTTCAAAGTT 57.879 30.769 5.05 0.00 0.00 2.66
1913 3988 9.237187 TCACCATATACAATTGCTTCAAAGTTA 57.763 29.630 5.05 0.00 0.00 2.24
1914 3989 9.289303 CACCATATACAATTGCTTCAAAGTTAC 57.711 33.333 5.05 0.00 0.00 2.50
1942 4294 4.973168 TGTAGATTTCAGACTTGCTTGGT 58.027 39.130 0.00 0.00 0.00 3.67
1945 4297 5.444663 AGATTTCAGACTTGCTTGGTTTC 57.555 39.130 0.00 0.00 0.00 2.78
1951 4303 3.378112 CAGACTTGCTTGGTTTCTGAACA 59.622 43.478 0.00 0.00 36.58 3.18
1963 4316 5.580297 TGGTTTCTGAACAATTGCTTCAAAC 59.420 36.000 17.98 18.11 37.51 2.93
1965 4318 4.320608 TCTGAACAATTGCTTCAAACCC 57.679 40.909 17.98 0.00 0.00 4.11
1966 4319 3.052036 CTGAACAATTGCTTCAAACCCG 58.948 45.455 17.98 7.94 0.00 5.28
1971 4324 5.461032 ACAATTGCTTCAAACCCGATTTA 57.539 34.783 5.05 0.00 0.00 1.40
1972 4325 5.848406 ACAATTGCTTCAAACCCGATTTAA 58.152 33.333 5.05 0.00 0.00 1.52
1979 4332 5.125578 GCTTCAAACCCGATTTAAATCTCCT 59.874 40.000 22.52 4.96 33.24 3.69
1981 4334 5.811190 TCAAACCCGATTTAAATCTCCTCA 58.189 37.500 22.52 1.97 33.24 3.86
1983 4336 4.152284 ACCCGATTTAAATCTCCTCACC 57.848 45.455 22.52 0.00 33.24 4.02
1989 4342 8.100791 CCCGATTTAAATCTCCTCACCAATATA 58.899 37.037 22.52 0.00 33.24 0.86
1995 4348 4.054780 TCTCCTCACCAATATAACGCAC 57.945 45.455 0.00 0.00 0.00 5.34
1999 4352 3.882888 CCTCACCAATATAACGCACCATT 59.117 43.478 0.00 0.00 0.00 3.16
2002 4355 4.702612 TCACCAATATAACGCACCATTGTT 59.297 37.500 0.00 0.00 0.00 2.83
2003 4356 5.184096 TCACCAATATAACGCACCATTGTTT 59.816 36.000 0.00 0.00 0.00 2.83
2026 4379 5.860941 TGGTCTATAAAAGAGGCTCTGAG 57.139 43.478 19.53 10.53 33.88 3.35
2035 4388 2.544721 AGAGGCTCTGAGGATTGTTGA 58.455 47.619 17.96 0.00 0.00 3.18
2049 4403 4.442753 GGATTGTTGAGGCCACTTTCAAAA 60.443 41.667 5.01 0.00 35.29 2.44
2052 4406 3.960102 TGTTGAGGCCACTTTCAAAAGAT 59.040 39.130 5.01 0.00 39.31 2.40
2074 4428 8.433249 AGATTATTGAGGCATCTGAATCTCTA 57.567 34.615 13.55 0.00 30.01 2.43
2078 4432 6.744175 TTGAGGCATCTGAATCTCTAATCT 57.256 37.500 0.00 0.00 0.00 2.40
2086 4440 9.571810 GCATCTGAATCTCTAATCTACATGTAG 57.428 37.037 24.37 24.37 34.56 2.74
2132 4486 4.469586 TGTGGCTATATGGACTGTTTCTGA 59.530 41.667 0.00 0.00 0.00 3.27
2150 4504 7.723616 TGTTTCTGATGGGATGTTTCTTCTTAA 59.276 33.333 0.00 0.00 0.00 1.85
2151 4505 8.743714 GTTTCTGATGGGATGTTTCTTCTTAAT 58.256 33.333 0.00 0.00 0.00 1.40
2168 4522 8.796475 TCTTCTTAATATGTTTTCTTGCAAGCT 58.204 29.630 21.99 4.45 0.00 3.74
2182 4536 3.084039 TGCAAGCTCATTAAAGGGTCAG 58.916 45.455 0.00 0.00 0.00 3.51
2187 4541 5.379706 AGCTCATTAAAGGGTCAGCTTAT 57.620 39.130 0.00 0.00 33.34 1.73
2189 4543 6.900194 AGCTCATTAAAGGGTCAGCTTATAA 58.100 36.000 0.00 0.00 33.34 0.98
2190 4544 7.521669 AGCTCATTAAAGGGTCAGCTTATAAT 58.478 34.615 0.00 0.00 33.34 1.28
2191 4545 7.446625 AGCTCATTAAAGGGTCAGCTTATAATG 59.553 37.037 0.00 0.00 33.34 1.90
2207 4561 7.669722 AGCTTATAATGTCCAAGTTTCCAAAGA 59.330 33.333 0.00 0.00 0.00 2.52
2217 4571 6.486657 TCCAAGTTTCCAAAGAAGTACATGAG 59.513 38.462 0.00 0.00 32.35 2.90
2235 4589 9.431887 GTACATGAGAGGAACTAATTAACACAA 57.568 33.333 0.00 0.00 41.55 3.33
2277 4631 8.669946 TGTGAAAAAGGAATTTATTTTGTCCC 57.330 30.769 3.23 0.00 0.00 4.46
2278 4632 8.490311 TGTGAAAAAGGAATTTATTTTGTCCCT 58.510 29.630 3.23 0.00 0.00 4.20
2279 4633 9.337396 GTGAAAAAGGAATTTATTTTGTCCCTT 57.663 29.630 0.00 0.00 34.34 3.95
2306 4660 7.645058 ATCAATGAAAATTACACTGTAGGGG 57.355 36.000 0.00 0.00 0.00 4.79
2307 4661 6.785076 TCAATGAAAATTACACTGTAGGGGA 58.215 36.000 0.00 0.00 0.00 4.81
2308 4662 7.410174 TCAATGAAAATTACACTGTAGGGGAT 58.590 34.615 0.00 0.00 0.00 3.85
2309 4663 7.893302 TCAATGAAAATTACACTGTAGGGGATT 59.107 33.333 0.00 0.00 0.00 3.01
2310 4664 9.184523 CAATGAAAATTACACTGTAGGGGATTA 57.815 33.333 0.00 0.00 0.00 1.75
2311 4665 8.747538 ATGAAAATTACACTGTAGGGGATTAC 57.252 34.615 0.00 0.00 0.00 1.89
2312 4666 7.114095 TGAAAATTACACTGTAGGGGATTACC 58.886 38.462 0.00 0.00 39.11 2.85
2325 4679 3.646736 GGATTACCCTACTGTTTGCCT 57.353 47.619 0.00 0.00 0.00 4.75
2326 4680 3.279434 GGATTACCCTACTGTTTGCCTG 58.721 50.000 0.00 0.00 0.00 4.85
2327 4681 3.308188 GGATTACCCTACTGTTTGCCTGT 60.308 47.826 0.00 0.00 0.00 4.00
2328 4682 4.080751 GGATTACCCTACTGTTTGCCTGTA 60.081 45.833 0.00 0.00 0.00 2.74
2329 4683 4.978438 TTACCCTACTGTTTGCCTGTAA 57.022 40.909 0.00 0.00 0.00 2.41
2330 4684 3.868619 ACCCTACTGTTTGCCTGTAAA 57.131 42.857 0.00 0.00 0.00 2.01
2331 4685 4.173290 ACCCTACTGTTTGCCTGTAAAA 57.827 40.909 0.00 0.00 0.00 1.52
2332 4686 4.538738 ACCCTACTGTTTGCCTGTAAAAA 58.461 39.130 0.00 0.00 0.00 1.94
2360 4714 9.813826 AAGGAATTTATATTATGAGAGGGGTTG 57.186 33.333 0.00 0.00 0.00 3.77
2361 4715 9.182642 AGGAATTTATATTATGAGAGGGGTTGA 57.817 33.333 0.00 0.00 0.00 3.18
2362 4716 9.981460 GGAATTTATATTATGAGAGGGGTTGAT 57.019 33.333 0.00 0.00 0.00 2.57
2369 4723 6.884472 TTATGAGAGGGGTTGATTAACTCA 57.116 37.500 2.30 0.00 39.11 3.41
2370 4724 5.983333 ATGAGAGGGGTTGATTAACTCAT 57.017 39.130 2.30 0.00 39.11 2.90
2371 4725 8.561536 TTATGAGAGGGGTTGATTAACTCATA 57.438 34.615 2.30 0.00 41.60 2.15
2372 4726 6.884472 TGAGAGGGGTTGATTAACTCATAA 57.116 37.500 2.30 0.00 39.11 1.90
2373 4727 6.650120 TGAGAGGGGTTGATTAACTCATAAC 58.350 40.000 2.30 0.00 39.11 1.89
2374 4728 6.214615 TGAGAGGGGTTGATTAACTCATAACA 59.785 38.462 2.30 0.00 39.11 2.41
2375 4729 7.092444 TGAGAGGGGTTGATTAACTCATAACAT 60.092 37.037 2.30 0.00 39.11 2.71
2376 4730 7.056635 AGAGGGGTTGATTAACTCATAACATG 58.943 38.462 2.30 0.00 39.11 3.21
2377 4731 5.594317 AGGGGTTGATTAACTCATAACATGC 59.406 40.000 2.30 0.00 39.11 4.06
2378 4732 5.359576 GGGGTTGATTAACTCATAACATGCA 59.640 40.000 2.30 0.00 39.11 3.96
2411 4765 8.674263 AATTATTTTGCAAACTGATTCCAACA 57.326 26.923 12.39 0.00 0.00 3.33
2419 4773 2.508526 ACTGATTCCAACAAGCCAGAC 58.491 47.619 0.00 0.00 0.00 3.51
2433 4787 5.416326 ACAAGCCAGACAGTAGTAACTAGAG 59.584 44.000 0.00 0.00 33.48 2.43
2448 4802 8.880991 AGTAACTAGAGAAGTAGGTTCATCAA 57.119 34.615 0.00 0.00 37.50 2.57
2458 4812 5.690865 AGTAGGTTCATCAAACAAAGGTCA 58.309 37.500 0.00 0.00 39.81 4.02
2562 4916 9.494271 CTATTGCCAGATATAATACACACTTGT 57.506 33.333 0.00 0.00 40.02 3.16
2591 4945 7.042950 TGTAACAGTTACACAGCTAACAGAAA 58.957 34.615 20.32 0.00 40.97 2.52
2598 4952 5.835113 ACACAGCTAACAGAAATGTTTGT 57.165 34.783 0.00 0.00 33.59 2.83
2607 4961 9.893305 GCTAACAGAAATGTTTGTTACTATTGT 57.107 29.630 0.00 0.00 38.41 2.71
2610 4964 8.458573 ACAGAAATGTTTGTTACTATTGTCCA 57.541 30.769 0.00 0.00 0.00 4.02
2612 4966 9.398170 CAGAAATGTTTGTTACTATTGTCCAAG 57.602 33.333 0.00 0.00 0.00 3.61
2613 4967 9.131791 AGAAATGTTTGTTACTATTGTCCAAGT 57.868 29.630 0.00 0.00 0.00 3.16
2614 4968 9.180678 GAAATGTTTGTTACTATTGTCCAAGTG 57.819 33.333 0.00 0.00 0.00 3.16
2615 4969 7.817418 ATGTTTGTTACTATTGTCCAAGTGT 57.183 32.000 0.00 0.00 0.00 3.55
2616 4970 7.633193 TGTTTGTTACTATTGTCCAAGTGTT 57.367 32.000 0.00 0.00 0.00 3.32
2617 4971 7.699566 TGTTTGTTACTATTGTCCAAGTGTTC 58.300 34.615 0.00 0.00 0.00 3.18
2618 4972 7.337184 TGTTTGTTACTATTGTCCAAGTGTTCA 59.663 33.333 0.00 0.00 0.00 3.18
2619 4973 6.854496 TGTTACTATTGTCCAAGTGTTCAC 57.146 37.500 0.00 0.00 0.00 3.18
2625 4979 4.746535 TTGTCCAAGTGTTCACTCACTA 57.253 40.909 5.91 0.00 46.25 2.74
2628 4982 4.161565 TGTCCAAGTGTTCACTCACTAACT 59.838 41.667 5.91 0.00 46.25 2.24
2643 4997 8.827677 CACTCACTAACTAATAAAACTATGCCC 58.172 37.037 0.00 0.00 0.00 5.36
2644 4998 8.545472 ACTCACTAACTAATAAAACTATGCCCA 58.455 33.333 0.00 0.00 0.00 5.36
2657 5011 6.824305 AACTATGCCCATCATTTATAGTGC 57.176 37.500 0.00 0.00 35.42 4.40
2664 5020 6.012945 TGCCCATCATTTATAGTGCCAGTATA 60.013 38.462 0.00 0.00 0.00 1.47
2666 5022 7.557719 GCCCATCATTTATAGTGCCAGTATAAT 59.442 37.037 11.75 2.10 29.07 1.28
2774 5134 4.037690 GCACACACATTTTGTCTGACTTC 58.962 43.478 9.51 0.00 35.67 3.01
2775 5135 4.201950 GCACACACATTTTGTCTGACTTCT 60.202 41.667 9.51 0.00 35.67 2.85
2779 5139 7.329226 CACACACATTTTGTCTGACTTCTTTTT 59.671 33.333 9.51 0.00 35.67 1.94
2780 5140 7.542130 ACACACATTTTGTCTGACTTCTTTTTC 59.458 33.333 9.51 0.00 35.67 2.29
2844 5212 2.348411 AAGGCCTGTATTCCGGATTG 57.652 50.000 5.69 0.00 0.00 2.67
2942 5322 4.216257 ACATTGCACCACAACTTCTCATAC 59.784 41.667 0.00 0.00 42.27 2.39
3158 8223 5.880054 AGTCCATACACACTTTATGTTGC 57.120 39.130 0.00 0.00 40.64 4.17
3191 8258 2.612972 GCTTACAGCAAGGCACACTCTA 60.613 50.000 0.00 0.00 41.89 2.43
3233 8300 0.596577 ACTAGCAAGCTTGTCGACGA 59.403 50.000 26.55 8.40 0.00 4.20
3251 8318 4.496341 CGACGACCCTTATAACGCTTAAGA 60.496 45.833 6.67 0.00 0.00 2.10
3258 8325 9.926751 GACCCTTATAACGCTTAAGATTAAAAC 57.073 33.333 6.67 0.00 0.00 2.43
3380 8452 2.600470 GTTGGAGGGTTGGGTGCC 60.600 66.667 0.00 0.00 0.00 5.01
3612 8685 7.441836 TCTGAGCTCTTAGTTTGTGAACAATA 58.558 34.615 16.19 0.00 38.26 1.90
3614 8687 9.371136 CTGAGCTCTTAGTTTGTGAACAATATA 57.629 33.333 16.19 0.00 38.26 0.86
3753 8826 5.490139 AAGAAAATGCGGTCACATGATAG 57.510 39.130 0.00 0.00 0.00 2.08
3924 8997 6.150641 TCCATCACTGCGGATATACTAACTAC 59.849 42.308 0.00 0.00 0.00 2.73
4112 9185 3.061697 GGGACATGATTGTTTCGTCGTAC 59.938 47.826 0.00 0.00 35.79 3.67
4141 9214 1.099879 GCTGACACATCCTGATGCCC 61.100 60.000 7.04 0.00 42.39 5.36
4226 9299 5.354234 CCGTGGAGCAGTAATTTCTGTTAAT 59.646 40.000 12.93 0.00 37.70 1.40
4438 9511 5.014123 CCCCATTGGCCTAAGATTACTATCA 59.986 44.000 3.32 0.00 32.95 2.15
4572 9645 2.593026 ACATTCCACACCAAAATCCGT 58.407 42.857 0.00 0.00 0.00 4.69
4596 9669 7.896274 CGTTTTTACATAATTGAGTACTGACCG 59.104 37.037 0.00 0.00 0.00 4.79
4598 9671 9.491675 TTTTTACATAATTGAGTACTGACCGAA 57.508 29.630 0.00 0.00 0.00 4.30
4664 9737 4.095036 GGAATTGTAAGCTGTGCTAAGACC 59.905 45.833 0.00 0.00 38.25 3.85
4707 9780 3.014623 GGCGCCTTTTTGAAGGTATAGT 58.985 45.455 22.15 0.00 42.00 2.12
4726 9799 3.428532 AGTACCACCGATACAGTCACTT 58.571 45.455 0.00 0.00 0.00 3.16
4729 9802 1.471287 CCACCGATACAGTCACTTCGA 59.529 52.381 0.00 0.00 33.59 3.71
4742 9894 4.393990 AGTCACTTCGAACGTTTCCTTTTT 59.606 37.500 0.46 0.00 0.00 1.94
4888 10224 2.662596 GGCATCGGCGGATCCATA 59.337 61.111 13.41 0.00 42.47 2.74
5015 10354 1.224075 CATCCTATGCTGACTTGCGG 58.776 55.000 0.00 0.00 35.36 5.69
5067 10406 3.360867 TCACCTGAAGTTTTGCTCCAAA 58.639 40.909 0.00 0.00 0.00 3.28
5085 10424 6.406849 GCTCCAAATTTATGTGATGGGCTTTA 60.407 38.462 0.00 0.00 0.00 1.85
5086 10425 7.673641 TCCAAATTTATGTGATGGGCTTTAT 57.326 32.000 0.00 0.00 0.00 1.40
5105 10444 6.539649 TTTATGTTTCTCGTTCCAGAACTG 57.460 37.500 8.77 3.17 39.08 3.16
5382 10727 4.641989 ACAGTTGATCTCTTTGCACAAACT 59.358 37.500 0.00 0.00 0.00 2.66
5557 10915 1.602323 GGTGGTGCCCGTCATGAAA 60.602 57.895 0.00 0.00 0.00 2.69
5566 10924 3.507597 CGTCATGAAACGGGACTCA 57.492 52.632 0.00 0.00 38.96 3.41
5581 10939 1.360551 CTCATCGCCGACCAGGTAG 59.639 63.158 0.00 0.00 43.70 3.18
5584 10942 1.076923 ATCGCCGACCAGGTAGAGT 60.077 57.895 0.24 0.00 43.70 3.24
5614 10972 2.362632 AGGTCCTTCTCCGGGTCG 60.363 66.667 0.00 0.00 0.00 4.79
5671 11029 4.798682 TCGGCCTTCTCCTCCCCC 62.799 72.222 0.00 0.00 0.00 5.40
5673 11031 2.368878 GGCCTTCTCCTCCCCCAT 60.369 66.667 0.00 0.00 0.00 4.00
5674 11032 2.761465 GGCCTTCTCCTCCCCCATG 61.761 68.421 0.00 0.00 0.00 3.66
5730 11088 2.737376 GACGGCGTTCACCCTGAC 60.737 66.667 16.19 0.00 0.00 3.51
5760 11118 2.268920 GAGCTCCATGGCCGACAA 59.731 61.111 6.96 0.00 0.00 3.18
5789 11147 5.964958 AAACGAAGAACATCATGGTCATT 57.035 34.783 5.23 0.00 36.30 2.57
5794 11152 5.586243 CGAAGAACATCATGGTCATTTAGGT 59.414 40.000 5.23 0.00 36.30 3.08
5811 11169 7.775093 TCATTTAGGTATTCAGGATTTCTGTGG 59.225 37.037 0.00 0.00 43.76 4.17
5824 11186 0.609957 TCTGTGGGCATTCAGGCTTG 60.610 55.000 0.00 0.00 43.56 4.01
5828 11190 0.469705 TGGGCATTCAGGCTTGTTGT 60.470 50.000 0.00 0.00 43.56 3.32
5829 11191 0.681175 GGGCATTCAGGCTTGTTGTT 59.319 50.000 0.00 0.00 43.56 2.83
5830 11192 1.892474 GGGCATTCAGGCTTGTTGTTA 59.108 47.619 0.00 0.00 43.56 2.41
5831 11193 2.497273 GGGCATTCAGGCTTGTTGTTAT 59.503 45.455 0.00 0.00 43.56 1.89
5842 11204 7.232534 TCAGGCTTGTTGTTATTAACAGGAAAT 59.767 33.333 9.10 0.00 43.27 2.17
5948 11310 3.879295 CGATGATTTGGGTCAAGCATACT 59.121 43.478 0.00 0.00 0.00 2.12
5954 11316 4.901197 TTGGGTCAAGCATACTACAGAA 57.099 40.909 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.744522 GAGTCCTAAGTGACGACCTCC 59.255 57.143 0.00 0.00 40.26 4.30
16 17 4.282496 GAGGATGAAGGAGTCCTAAGTGA 58.718 47.826 13.43 0.00 44.70 3.41
23 24 1.127343 CCAGGAGGATGAAGGAGTCC 58.873 60.000 0.00 0.00 36.89 3.85
25 26 1.364328 AGACCAGGAGGATGAAGGAGT 59.636 52.381 0.00 0.00 38.69 3.85
34 35 2.838202 GGTACAATGAAGACCAGGAGGA 59.162 50.000 0.00 0.00 38.69 3.71
44 45 6.765036 AGAATGCTCATACAGGTACAATGAAG 59.235 38.462 4.48 0.50 0.00 3.02
63 64 8.850454 TCCGCTTTATTAAATTGTAAGAATGC 57.150 30.769 3.08 3.08 0.00 3.56
68 69 7.915397 ACATGCTCCGCTTTATTAAATTGTAAG 59.085 33.333 0.00 0.00 0.00 2.34
73 74 9.083080 GTTAAACATGCTCCGCTTTATTAAATT 57.917 29.630 0.00 0.00 0.00 1.82
75 76 7.030768 GGTTAAACATGCTCCGCTTTATTAAA 58.969 34.615 0.00 0.00 0.00 1.52
139 141 6.210078 GTTGTGCCTATAGTCTGTGATCTAC 58.790 44.000 0.00 0.00 0.00 2.59
158 160 6.094881 CCAAATGGGTATACTTGTAGGTTGTG 59.905 42.308 2.25 0.00 0.00 3.33
189 191 4.832248 AGAGCAAAGTCATACGGAAATCA 58.168 39.130 0.00 0.00 0.00 2.57
194 196 2.742053 GCAAAGAGCAAAGTCATACGGA 59.258 45.455 0.00 0.00 44.79 4.69
195 197 3.122937 GCAAAGAGCAAAGTCATACGG 57.877 47.619 0.00 0.00 44.79 4.02
213 377 5.178061 CACACACTAAAGATCATACCAGCA 58.822 41.667 0.00 0.00 0.00 4.41
219 383 9.203421 CAACACTAACACACACTAAAGATCATA 57.797 33.333 0.00 0.00 0.00 2.15
220 384 7.173218 CCAACACTAACACACACTAAAGATCAT 59.827 37.037 0.00 0.00 0.00 2.45
228 392 3.118555 ACTGCCAACACTAACACACACTA 60.119 43.478 0.00 0.00 0.00 2.74
237 401 1.979855 ATGCACACTGCCAACACTAA 58.020 45.000 0.00 0.00 44.23 2.24
248 412 7.222805 CACGTCTACATAATTAGAATGCACACT 59.777 37.037 0.00 0.00 29.70 3.55
258 422 8.683550 TTTCTCACACACGTCTACATAATTAG 57.316 34.615 0.00 0.00 0.00 1.73
271 435 3.885484 AGATTTGCTTTCTCACACACG 57.115 42.857 0.00 0.00 0.00 4.49
275 439 7.877612 TGTTGAGTATAGATTTGCTTTCTCACA 59.122 33.333 0.00 0.00 31.38 3.58
277 441 7.063426 CGTGTTGAGTATAGATTTGCTTTCTCA 59.937 37.037 0.00 0.00 0.00 3.27
278 442 7.063544 ACGTGTTGAGTATAGATTTGCTTTCTC 59.936 37.037 0.00 0.00 0.00 2.87
279 443 6.874134 ACGTGTTGAGTATAGATTTGCTTTCT 59.126 34.615 0.00 0.00 0.00 2.52
280 444 6.955963 CACGTGTTGAGTATAGATTTGCTTTC 59.044 38.462 7.58 0.00 0.00 2.62
281 445 6.426937 ACACGTGTTGAGTATAGATTTGCTTT 59.573 34.615 17.22 0.00 0.00 3.51
282 446 5.932303 ACACGTGTTGAGTATAGATTTGCTT 59.068 36.000 17.22 0.00 0.00 3.91
285 1615 5.004440 CGGACACGTGTTGAGTATAGATTTG 59.996 44.000 24.26 0.00 34.81 2.32
296 1626 1.885388 CCAAGCGGACACGTGTTGA 60.885 57.895 24.26 0.00 43.45 3.18
298 1628 3.276846 GCCAAGCGGACACGTGTT 61.277 61.111 24.26 3.23 43.45 3.32
309 1646 3.842925 TTGTCAGGACCGGCCAAGC 62.843 63.158 15.92 6.67 40.02 4.01
312 1649 2.525124 ATGTTGTCAGGACCGGCCA 61.525 57.895 15.92 0.00 40.02 5.36
316 1653 2.494059 AGAAACATGTTGTCAGGACCG 58.506 47.619 12.82 0.00 0.00 4.79
339 1676 8.950208 AAACAAGAAACGGAAATAAATGGAAA 57.050 26.923 0.00 0.00 0.00 3.13
377 1714 9.603921 ACAAATGAAAAGAAGAAAATCACATGT 57.396 25.926 0.00 0.00 0.00 3.21
424 1761 9.566432 TGCCACAATATATGTTCATGTAATACA 57.434 29.630 0.00 0.00 41.46 2.29
425 1762 9.825972 GTGCCACAATATATGTTCATGTAATAC 57.174 33.333 0.00 0.00 41.46 1.89
426 1763 9.566432 TGTGCCACAATATATGTTCATGTAATA 57.434 29.630 0.00 0.00 41.46 0.98
427 1764 8.352201 GTGTGCCACAATATATGTTCATGTAAT 58.648 33.333 0.00 0.00 41.46 1.89
428 1765 7.337942 TGTGTGCCACAATATATGTTCATGTAA 59.662 33.333 0.00 0.00 41.69 2.41
429 1766 6.825721 TGTGTGCCACAATATATGTTCATGTA 59.174 34.615 0.00 0.00 41.69 2.29
442 1779 6.772452 GAGAGTTTCTCATGTGTGCCACAAT 61.772 44.000 0.00 0.00 41.06 2.71
455 1792 7.244886 TCATACATTTGAGGAGAGTTTCTCA 57.755 36.000 8.23 0.00 45.12 3.27
460 1797 5.690464 AGCTCATACATTTGAGGAGAGTT 57.310 39.130 3.85 0.00 42.78 3.01
466 1803 7.615582 TGAAAGTAAGCTCATACATTTGAGG 57.384 36.000 3.85 0.00 42.78 3.86
500 1839 8.320617 ACCACACAATAAGGAAAATAAATGCAT 58.679 29.630 0.00 0.00 0.00 3.96
537 1877 9.231297 CCAGAACAATTCTTCACCTCTTATTTA 57.769 33.333 0.00 0.00 38.11 1.40
542 1882 5.310409 TCCAGAACAATTCTTCACCTCTT 57.690 39.130 0.00 0.00 38.11 2.85
560 1900 8.957466 ACTGAATGCAAATGATCATATATCCAG 58.043 33.333 9.04 12.26 0.00 3.86
565 1905 9.743581 ATGGTACTGAATGCAAATGATCATATA 57.256 29.630 9.04 0.00 0.00 0.86
567 1907 7.522562 GCATGGTACTGAATGCAAATGATCATA 60.523 37.037 9.04 0.00 46.75 2.15
568 1908 6.737622 GCATGGTACTGAATGCAAATGATCAT 60.738 38.462 17.93 1.18 46.75 2.45
569 1909 5.450826 GCATGGTACTGAATGCAAATGATCA 60.451 40.000 17.93 0.00 46.75 2.92
570 1910 4.980434 GCATGGTACTGAATGCAAATGATC 59.020 41.667 17.93 0.00 46.75 2.92
571 1911 4.940463 GCATGGTACTGAATGCAAATGAT 58.060 39.130 17.93 0.00 46.75 2.45
572 1912 4.374843 GCATGGTACTGAATGCAAATGA 57.625 40.909 17.93 0.00 46.75 2.57
579 1919 5.472148 ACAAAACATGCATGGTACTGAATG 58.528 37.500 29.41 17.21 38.05 2.67
580 1920 5.726980 ACAAAACATGCATGGTACTGAAT 57.273 34.783 29.41 4.99 0.00 2.57
587 1927 3.540314 ACACAACAAAACATGCATGGT 57.460 38.095 29.41 22.35 0.00 3.55
601 1941 9.391006 TCAGGGAAAACTCATATAATACACAAC 57.609 33.333 0.00 0.00 0.00 3.32
613 1953 8.854117 GCTTGATAATAATCAGGGAAAACTCAT 58.146 33.333 0.53 0.00 42.97 2.90
614 1954 7.833682 TGCTTGATAATAATCAGGGAAAACTCA 59.166 33.333 0.53 0.00 42.97 3.41
615 1955 8.225603 TGCTTGATAATAATCAGGGAAAACTC 57.774 34.615 0.53 0.00 42.97 3.01
616 1956 8.593945 TTGCTTGATAATAATCAGGGAAAACT 57.406 30.769 2.70 0.00 43.39 2.66
622 1962 8.423349 TCCAAAATTGCTTGATAATAATCAGGG 58.577 33.333 0.53 0.00 42.97 4.45
702 2055 0.180171 TCCATGGCCATTACCTCACG 59.820 55.000 17.92 1.41 0.00 4.35
715 2068 0.394565 GACGGGAGAGGAATCCATGG 59.605 60.000 4.97 4.97 41.52 3.66
716 2069 0.032678 CGACGGGAGAGGAATCCATG 59.967 60.000 0.61 0.00 41.52 3.66
717 2070 1.749334 GCGACGGGAGAGGAATCCAT 61.749 60.000 0.61 0.00 41.52 3.41
718 2071 2.423898 GCGACGGGAGAGGAATCCA 61.424 63.158 0.61 0.00 41.52 3.41
719 2072 1.677637 AAGCGACGGGAGAGGAATCC 61.678 60.000 0.00 0.00 38.76 3.01
720 2073 0.175989 AAAGCGACGGGAGAGGAATC 59.824 55.000 0.00 0.00 0.00 2.52
721 2074 0.108138 CAAAGCGACGGGAGAGGAAT 60.108 55.000 0.00 0.00 0.00 3.01
722 2075 1.183030 TCAAAGCGACGGGAGAGGAA 61.183 55.000 0.00 0.00 0.00 3.36
723 2076 1.595993 CTCAAAGCGACGGGAGAGGA 61.596 60.000 0.00 0.00 0.00 3.71
724 2077 1.153745 CTCAAAGCGACGGGAGAGG 60.154 63.158 0.00 0.00 0.00 3.69
725 2078 1.807573 GCTCAAAGCGACGGGAGAG 60.808 63.158 0.00 0.00 0.00 3.20
726 2079 2.261671 GCTCAAAGCGACGGGAGA 59.738 61.111 0.00 0.00 0.00 3.71
748 2101 3.947841 CTCTCTCTCTCGCCCGCG 61.948 72.222 0.00 0.00 41.35 6.46
749 2102 2.515057 TCTCTCTCTCTCGCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
750 2103 1.891919 CCTCTCTCTCTCTCGCCCG 60.892 68.421 0.00 0.00 0.00 6.13
751 2104 0.470766 TACCTCTCTCTCTCTCGCCC 59.529 60.000 0.00 0.00 0.00 6.13
752 2105 1.542547 CCTACCTCTCTCTCTCTCGCC 60.543 61.905 0.00 0.00 0.00 5.54
753 2106 1.542547 CCCTACCTCTCTCTCTCTCGC 60.543 61.905 0.00 0.00 0.00 5.03
754 2107 1.071699 CCCCTACCTCTCTCTCTCTCG 59.928 61.905 0.00 0.00 0.00 4.04
755 2108 1.202891 GCCCCTACCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
763 2116 2.128507 CACTCGGCCCCTACCTCTC 61.129 68.421 0.00 0.00 0.00 3.20
775 2128 3.390521 TGCACTAGGCCCACTCGG 61.391 66.667 0.00 0.00 43.89 4.63
776 2129 2.125512 GTGCACTAGGCCCACTCG 60.126 66.667 10.32 0.00 43.89 4.18
777 2130 1.078848 CTGTGCACTAGGCCCACTC 60.079 63.158 19.41 0.00 43.89 3.51
778 2131 2.596851 CCTGTGCACTAGGCCCACT 61.597 63.158 19.41 0.00 43.89 4.00
784 2137 2.270205 CTGGGCCTGTGCACTAGG 59.730 66.667 23.28 23.28 43.18 3.02
785 2138 2.437359 GCTGGGCCTGTGCACTAG 60.437 66.667 19.41 13.21 43.18 2.57
786 2139 4.033776 GGCTGGGCCTGTGCACTA 62.034 66.667 19.41 3.54 46.69 2.74
813 2166 2.761160 GATTGGGTTGGGTCCGGT 59.239 61.111 0.00 0.00 0.00 5.28
832 2185 0.762418 GGGTTTTCCTTTGGGGTTGG 59.238 55.000 0.00 0.00 40.46 3.77
833 2186 1.801242 AGGGTTTTCCTTTGGGGTTG 58.199 50.000 0.00 0.00 45.47 3.77
855 2208 1.933812 GTGGATTGGGGAGGGGGAA 60.934 63.158 0.00 0.00 0.00 3.97
857 2210 3.429580 GGTGGATTGGGGAGGGGG 61.430 72.222 0.00 0.00 0.00 5.40
859 2212 1.935931 AAGGGTGGATTGGGGAGGG 60.936 63.158 0.00 0.00 0.00 4.30
884 2238 0.467106 CTGAGGAGAGGAGATGGCGA 60.467 60.000 0.00 0.00 0.00 5.54
885 2239 1.462731 CCTGAGGAGAGGAGATGGCG 61.463 65.000 0.00 0.00 34.69 5.69
886 2240 0.398381 ACCTGAGGAGAGGAGATGGC 60.398 60.000 4.99 0.00 36.51 4.40
888 2242 0.752054 GCACCTGAGGAGAGGAGATG 59.248 60.000 4.99 0.00 36.51 2.90
889 2243 0.754957 CGCACCTGAGGAGAGGAGAT 60.755 60.000 4.99 0.00 36.51 2.75
891 2245 3.074999 GCGCACCTGAGGAGAGGAG 62.075 68.421 4.99 0.00 36.51 3.69
892 2246 3.071206 GCGCACCTGAGGAGAGGA 61.071 66.667 4.99 0.00 36.51 3.71
894 2248 2.003658 GAGAGCGCACCTGAGGAGAG 62.004 65.000 11.47 0.00 0.00 3.20
895 2249 2.036414 AGAGCGCACCTGAGGAGA 59.964 61.111 11.47 0.00 0.00 3.71
896 2250 2.003658 GAGAGAGCGCACCTGAGGAG 62.004 65.000 11.47 0.00 0.00 3.69
897 2251 2.036414 AGAGAGCGCACCTGAGGA 59.964 61.111 11.47 0.00 0.00 3.71
898 2252 2.051518 AGAGAGAGCGCACCTGAGG 61.052 63.158 11.47 0.00 0.00 3.86
899 2253 1.139308 CAGAGAGAGCGCACCTGAG 59.861 63.158 11.47 0.00 0.00 3.35
900 2254 2.999485 GCAGAGAGAGCGCACCTGA 61.999 63.158 11.47 0.00 0.00 3.86
902 2256 2.679642 AGCAGAGAGAGCGCACCT 60.680 61.111 11.47 6.01 37.01 4.00
903 2257 2.202730 GAGCAGAGAGAGCGCACC 60.203 66.667 11.47 0.00 37.01 5.01
904 2258 2.202730 GGAGCAGAGAGAGCGCAC 60.203 66.667 11.47 2.25 37.01 5.34
905 2259 3.456365 GGGAGCAGAGAGAGCGCA 61.456 66.667 11.47 0.00 37.01 6.09
906 2260 4.219999 GGGGAGCAGAGAGAGCGC 62.220 72.222 0.00 0.00 37.01 5.92
908 2262 3.092780 GCAGGGGAGCAGAGAGAGC 62.093 68.421 0.00 0.00 0.00 4.09
909 2263 2.784356 CGCAGGGGAGCAGAGAGAG 61.784 68.421 0.00 0.00 0.00 3.20
910 2264 2.757508 CGCAGGGGAGCAGAGAGA 60.758 66.667 0.00 0.00 0.00 3.10
1064 2442 4.787280 AGGAGGAGGAGGCGTGGG 62.787 72.222 0.00 0.00 0.00 4.61
1065 2443 3.151022 GAGGAGGAGGAGGCGTGG 61.151 72.222 0.00 0.00 0.00 4.94
1066 2444 3.151022 GGAGGAGGAGGAGGCGTG 61.151 72.222 0.00 0.00 0.00 5.34
1067 2445 3.351885 AGGAGGAGGAGGAGGCGT 61.352 66.667 0.00 0.00 0.00 5.68
1068 2446 2.520741 GAGGAGGAGGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
1071 2449 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1094 2474 3.471244 GATGGACGCGACGGAGAGG 62.471 68.421 15.93 0.00 0.00 3.69
1117 2506 0.810031 CTAACAATCCACGGGCGGAG 60.810 60.000 0.00 0.00 38.83 4.63
1118 2507 1.219664 CTAACAATCCACGGGCGGA 59.780 57.895 0.00 0.00 40.07 5.54
1120 2509 0.446222 CAACTAACAATCCACGGGCG 59.554 55.000 0.00 0.00 0.00 6.13
1121 2510 0.170339 GCAACTAACAATCCACGGGC 59.830 55.000 0.00 0.00 0.00 6.13
1122 2511 0.446222 CGCAACTAACAATCCACGGG 59.554 55.000 0.00 0.00 0.00 5.28
1123 2512 0.179200 GCGCAACTAACAATCCACGG 60.179 55.000 0.30 0.00 0.00 4.94
1124 2513 0.515127 TGCGCAACTAACAATCCACG 59.485 50.000 8.16 0.00 0.00 4.94
1125 2514 1.729149 GCTGCGCAACTAACAATCCAC 60.729 52.381 13.05 0.00 0.00 4.02
1126 2515 0.521291 GCTGCGCAACTAACAATCCA 59.479 50.000 13.05 0.00 0.00 3.41
1127 2516 0.521242 CGCTGCGCAACTAACAATCC 60.521 55.000 13.05 0.00 0.00 3.01
1128 2517 2.916583 CGCTGCGCAACTAACAATC 58.083 52.632 13.05 0.00 0.00 2.67
1195 3173 1.134670 GCACACATAGTCAGTCCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
1218 3196 1.335051 GGCGAGCAGGAACAAAGAAAC 60.335 52.381 0.00 0.00 0.00 2.78
1386 3381 2.409870 GCAACATCGGGGGCTGAAG 61.410 63.158 0.00 0.00 0.00 3.02
1392 3387 0.038343 CAAACAAGCAACATCGGGGG 60.038 55.000 0.00 0.00 0.00 5.40
1615 3614 8.573035 TGTCATTCAAAAGTTGGAAATAGGTAC 58.427 33.333 0.00 0.00 0.00 3.34
1616 3615 8.698973 TGTCATTCAAAAGTTGGAAATAGGTA 57.301 30.769 0.00 0.00 0.00 3.08
1617 3616 7.595819 TGTCATTCAAAAGTTGGAAATAGGT 57.404 32.000 0.00 0.00 0.00 3.08
1622 3621 8.260818 TGGTTAATGTCATTCAAAAGTTGGAAA 58.739 29.630 0.07 0.00 0.00 3.13
1624 3623 7.353414 TGGTTAATGTCATTCAAAAGTTGGA 57.647 32.000 0.07 0.00 0.00 3.53
1625 3624 7.925483 TCTTGGTTAATGTCATTCAAAAGTTGG 59.075 33.333 0.07 0.00 0.00 3.77
1626 3625 8.755018 GTCTTGGTTAATGTCATTCAAAAGTTG 58.245 33.333 0.07 0.00 0.00 3.16
1627 3626 8.474025 TGTCTTGGTTAATGTCATTCAAAAGTT 58.526 29.630 0.07 0.00 0.00 2.66
1628 3627 8.006298 TGTCTTGGTTAATGTCATTCAAAAGT 57.994 30.769 0.07 0.00 0.00 2.66
1629 3628 8.755018 GTTGTCTTGGTTAATGTCATTCAAAAG 58.245 33.333 0.07 3.18 0.00 2.27
1630 3629 7.708752 GGTTGTCTTGGTTAATGTCATTCAAAA 59.291 33.333 0.07 0.00 0.00 2.44
1646 3645 4.499696 GGAACACAATGAAGGTTGTCTTGG 60.500 45.833 0.00 0.00 40.17 3.61
1649 3648 4.170468 AGGAACACAATGAAGGTTGTCT 57.830 40.909 0.00 0.00 40.17 3.41
1664 3671 4.102524 CAGGTAGGCCATGTATAAGGAACA 59.897 45.833 5.01 0.00 37.19 3.18
1672 3679 2.394632 TCGAACAGGTAGGCCATGTAT 58.605 47.619 5.01 0.00 37.19 2.29
1675 3682 1.737793 GTTTCGAACAGGTAGGCCATG 59.262 52.381 5.01 0.00 37.19 3.66
1680 3687 3.002965 GTGTTTGGTTTCGAACAGGTAGG 59.997 47.826 0.00 0.00 45.12 3.18
1681 3688 3.623960 TGTGTTTGGTTTCGAACAGGTAG 59.376 43.478 0.00 0.00 45.12 3.18
1692 3699 1.122227 AGCATGGCTGTGTTTGGTTT 58.878 45.000 0.00 0.00 37.57 3.27
1703 3710 2.834549 AGTAGTTCACACTAGCATGGCT 59.165 45.455 0.00 0.00 43.41 4.75
1704 3711 2.932614 CAGTAGTTCACACTAGCATGGC 59.067 50.000 0.00 0.00 36.09 4.40
1717 3724 1.066757 GCTAGTACCGGCCAGTAGTTC 59.933 57.143 11.74 1.67 0.00 3.01
1731 3738 5.479306 GAACATCTCCTGTGTTTGCTAGTA 58.521 41.667 0.00 0.00 39.72 1.82
1754 3768 2.350388 CGGTTGATGACTGAAAAACCCG 60.350 50.000 0.00 0.00 37.57 5.28
1756 3770 3.314080 TCACGGTTGATGACTGAAAAACC 59.686 43.478 0.00 0.00 38.07 3.27
1758 3772 5.124776 ACTTTCACGGTTGATGACTGAAAAA 59.875 36.000 0.00 0.00 34.18 1.94
1763 3777 4.273480 AGAAACTTTCACGGTTGATGACTG 59.727 41.667 4.34 0.00 40.65 3.51
1767 3781 5.424121 AGAAGAAACTTTCACGGTTGATG 57.576 39.130 4.34 0.00 0.00 3.07
1771 3785 5.880887 AGAAGAAGAAGAAACTTTCACGGTT 59.119 36.000 4.34 0.00 0.00 4.44
1777 3791 9.929722 GAAGAAGAAGAAGAAGAAGAAACTTTC 57.070 33.333 0.00 0.00 0.00 2.62
1780 3794 9.325198 GAAGAAGAAGAAGAAGAAGAAGAAACT 57.675 33.333 0.00 0.00 0.00 2.66
1785 3799 8.550376 CAACAGAAGAAGAAGAAGAAGAAGAAG 58.450 37.037 0.00 0.00 0.00 2.85
1787 3801 6.481644 GCAACAGAAGAAGAAGAAGAAGAAGA 59.518 38.462 0.00 0.00 0.00 2.87
1788 3802 6.259608 TGCAACAGAAGAAGAAGAAGAAGAAG 59.740 38.462 0.00 0.00 0.00 2.85
1790 3804 5.674525 TGCAACAGAAGAAGAAGAAGAAGA 58.325 37.500 0.00 0.00 0.00 2.87
1791 3805 5.049543 CCTGCAACAGAAGAAGAAGAAGAAG 60.050 44.000 0.00 0.00 32.44 2.85
1792 3806 4.818546 CCTGCAACAGAAGAAGAAGAAGAA 59.181 41.667 0.00 0.00 32.44 2.52
1793 3807 4.101585 TCCTGCAACAGAAGAAGAAGAAGA 59.898 41.667 0.00 0.00 32.44 2.87
1794 3808 4.384056 TCCTGCAACAGAAGAAGAAGAAG 58.616 43.478 0.00 0.00 32.44 2.85
1795 3809 4.422073 TCCTGCAACAGAAGAAGAAGAA 57.578 40.909 0.00 0.00 32.44 2.52
1796 3810 4.630644 ATCCTGCAACAGAAGAAGAAGA 57.369 40.909 0.00 0.00 32.44 2.87
1797 3811 5.121454 GTGTATCCTGCAACAGAAGAAGAAG 59.879 44.000 0.00 0.00 32.44 2.85
1798 3812 4.997395 GTGTATCCTGCAACAGAAGAAGAA 59.003 41.667 0.00 0.00 32.44 2.52
1799 3813 4.040339 TGTGTATCCTGCAACAGAAGAAGA 59.960 41.667 0.00 0.00 32.44 2.87
1800 3814 4.153117 GTGTGTATCCTGCAACAGAAGAAG 59.847 45.833 0.00 0.00 32.44 2.85
1811 3825 8.863049 CAATTCTTTTTAATGTGTGTATCCTGC 58.137 33.333 0.00 0.00 0.00 4.85
1827 3841 9.410556 CACTGGATAAAATCGACAATTCTTTTT 57.589 29.630 0.00 0.00 0.00 1.94
1828 3842 8.576442 ACACTGGATAAAATCGACAATTCTTTT 58.424 29.630 0.00 0.00 0.00 2.27
1829 3843 8.023128 CACACTGGATAAAATCGACAATTCTTT 58.977 33.333 0.00 0.00 0.00 2.52
1830 3844 7.174946 ACACACTGGATAAAATCGACAATTCTT 59.825 33.333 0.00 0.00 0.00 2.52
1831 3845 6.655003 ACACACTGGATAAAATCGACAATTCT 59.345 34.615 0.00 0.00 0.00 2.40
1832 3846 6.742718 CACACACTGGATAAAATCGACAATTC 59.257 38.462 0.00 0.00 0.00 2.17
1833 3847 6.349280 CCACACACTGGATAAAATCGACAATT 60.349 38.462 0.00 0.00 43.95 2.32
1834 3848 5.123820 CCACACACTGGATAAAATCGACAAT 59.876 40.000 0.00 0.00 43.95 2.71
1835 3849 4.454161 CCACACACTGGATAAAATCGACAA 59.546 41.667 0.00 0.00 43.95 3.18
1836 3850 4.000325 CCACACACTGGATAAAATCGACA 59.000 43.478 0.00 0.00 43.95 4.35
1837 3851 4.000988 ACCACACACTGGATAAAATCGAC 58.999 43.478 0.00 0.00 43.95 4.20
1838 3852 4.000325 CACCACACACTGGATAAAATCGA 59.000 43.478 0.00 0.00 43.95 3.59
1839 3853 3.126858 CCACCACACACTGGATAAAATCG 59.873 47.826 0.00 0.00 43.95 3.34
1840 3854 4.079253 ACCACCACACACTGGATAAAATC 58.921 43.478 0.00 0.00 43.95 2.17
1841 3855 4.112634 ACCACCACACACTGGATAAAAT 57.887 40.909 0.00 0.00 43.95 1.82
1842 3856 3.586470 ACCACCACACACTGGATAAAA 57.414 42.857 0.00 0.00 43.95 1.52
1843 3857 3.558321 GCTACCACCACACACTGGATAAA 60.558 47.826 0.00 0.00 43.95 1.40
1844 3858 2.027561 GCTACCACCACACACTGGATAA 60.028 50.000 0.00 0.00 43.95 1.75
1861 3875 6.442513 AAATGGAAGAATAAGCACTGCTAC 57.557 37.500 3.33 0.00 38.25 3.58
1867 3881 7.771183 TGGTGATTAAATGGAAGAATAAGCAC 58.229 34.615 4.66 4.66 41.47 4.40
1916 3991 7.831193 ACCAAGCAAGTCTGAAATCTACAATAT 59.169 33.333 0.00 0.00 0.00 1.28
1917 3992 7.168219 ACCAAGCAAGTCTGAAATCTACAATA 58.832 34.615 0.00 0.00 0.00 1.90
1918 3993 6.006449 ACCAAGCAAGTCTGAAATCTACAAT 58.994 36.000 0.00 0.00 0.00 2.71
1919 3994 5.376625 ACCAAGCAAGTCTGAAATCTACAA 58.623 37.500 0.00 0.00 0.00 2.41
1920 3995 4.973168 ACCAAGCAAGTCTGAAATCTACA 58.027 39.130 0.00 0.00 0.00 2.74
1923 3998 5.009410 CAGAAACCAAGCAAGTCTGAAATCT 59.991 40.000 0.00 0.00 38.37 2.40
1924 3999 5.009010 TCAGAAACCAAGCAAGTCTGAAATC 59.991 40.000 0.00 0.00 41.22 2.17
1925 4000 4.889409 TCAGAAACCAAGCAAGTCTGAAAT 59.111 37.500 0.00 0.00 41.22 2.17
1926 4001 4.269183 TCAGAAACCAAGCAAGTCTGAAA 58.731 39.130 0.00 0.00 41.22 2.69
1942 4294 5.115480 GGGTTTGAAGCAATTGTTCAGAAA 58.885 37.500 17.17 10.95 35.39 2.52
1945 4297 3.052036 CGGGTTTGAAGCAATTGTTCAG 58.948 45.455 17.17 7.52 35.39 3.02
1951 4303 7.386059 AGATTTAAATCGGGTTTGAAGCAATT 58.614 30.769 19.86 0.00 40.35 2.32
1963 4316 4.150897 TGGTGAGGAGATTTAAATCGGG 57.849 45.455 19.86 0.00 40.35 5.14
1971 4324 5.527582 GTGCGTTATATTGGTGAGGAGATTT 59.472 40.000 0.00 0.00 0.00 2.17
1972 4325 5.057149 GTGCGTTATATTGGTGAGGAGATT 58.943 41.667 0.00 0.00 0.00 2.40
1979 4332 4.265893 ACAATGGTGCGTTATATTGGTGA 58.734 39.130 0.00 0.00 35.42 4.02
1981 4334 5.652994 AAACAATGGTGCGTTATATTGGT 57.347 34.783 0.00 0.00 35.42 3.67
1983 4336 6.329838 CCAAAACAATGGTGCGTTATATTG 57.670 37.500 0.00 0.00 35.65 1.90
1995 4348 7.035612 GCCTCTTTTATAGACCAAAACAATGG 58.964 38.462 0.00 0.00 46.38 3.16
1999 4352 6.655003 CAGAGCCTCTTTTATAGACCAAAACA 59.345 38.462 0.00 0.00 0.00 2.83
2002 4355 6.352222 CCTCAGAGCCTCTTTTATAGACCAAA 60.352 42.308 0.00 0.00 0.00 3.28
2003 4356 5.129485 CCTCAGAGCCTCTTTTATAGACCAA 59.871 44.000 0.00 0.00 0.00 3.67
2026 4379 2.238521 TGAAAGTGGCCTCAACAATCC 58.761 47.619 3.32 0.00 0.00 3.01
2035 4388 6.071165 CCTCAATAATCTTTTGAAAGTGGCCT 60.071 38.462 3.32 0.00 37.31 5.19
2049 4403 7.319052 AGAGATTCAGATGCCTCAATAATCT 57.681 36.000 10.87 10.87 35.50 2.40
2052 4406 8.878211 AGATTAGAGATTCAGATGCCTCAATAA 58.122 33.333 0.00 0.00 0.00 1.40
2074 4428 9.935241 GAATCCATGACATACTACATGTAGATT 57.065 33.333 34.16 20.26 41.26 2.40
2088 4442 7.772292 GCCACATACTATATGAATCCATGACAT 59.228 37.037 0.00 0.00 34.31 3.06
2089 4443 7.038088 AGCCACATACTATATGAATCCATGACA 60.038 37.037 0.00 0.00 34.31 3.58
2090 4444 7.334090 AGCCACATACTATATGAATCCATGAC 58.666 38.462 0.00 0.00 34.31 3.06
2109 4463 4.469586 TCAGAAACAGTCCATATAGCCACA 59.530 41.667 0.00 0.00 0.00 4.17
2150 4504 9.362539 CTTTAATGAGCTTGCAAGAAAACATAT 57.637 29.630 30.39 17.28 0.00 1.78
2151 4505 7.814107 CCTTTAATGAGCTTGCAAGAAAACATA 59.186 33.333 30.39 11.64 0.00 2.29
2159 4513 3.507233 TGACCCTTTAATGAGCTTGCAAG 59.493 43.478 22.44 22.44 0.00 4.01
2168 4522 7.719633 GGACATTATAAGCTGACCCTTTAATGA 59.280 37.037 7.94 0.00 34.45 2.57
2182 4536 7.826690 TCTTTGGAAACTTGGACATTATAAGC 58.173 34.615 0.00 0.00 0.00 3.09
2187 4541 7.776030 TGTACTTCTTTGGAAACTTGGACATTA 59.224 33.333 0.00 0.00 0.00 1.90
2189 4543 6.126409 TGTACTTCTTTGGAAACTTGGACAT 58.874 36.000 0.00 0.00 0.00 3.06
2190 4544 5.502079 TGTACTTCTTTGGAAACTTGGACA 58.498 37.500 0.00 0.00 0.00 4.02
2191 4545 6.262273 TCATGTACTTCTTTGGAAACTTGGAC 59.738 38.462 0.00 0.00 0.00 4.02
2207 4561 9.654663 GTGTTAATTAGTTCCTCTCATGTACTT 57.345 33.333 0.00 0.00 0.00 2.24
2252 4606 8.490311 AGGGACAAAATAAATTCCTTTTTCACA 58.510 29.630 0.00 0.00 0.00 3.58
2280 4634 9.354673 CCCCTACAGTGTAATTTTCATTGATAT 57.645 33.333 4.21 0.00 0.00 1.63
2281 4635 8.553153 TCCCCTACAGTGTAATTTTCATTGATA 58.447 33.333 4.21 0.00 0.00 2.15
2282 4636 7.410174 TCCCCTACAGTGTAATTTTCATTGAT 58.590 34.615 4.21 0.00 0.00 2.57
2283 4637 6.785076 TCCCCTACAGTGTAATTTTCATTGA 58.215 36.000 4.21 0.00 0.00 2.57
2284 4638 7.645058 ATCCCCTACAGTGTAATTTTCATTG 57.355 36.000 4.21 0.00 0.00 2.82
2285 4639 9.185680 GTAATCCCCTACAGTGTAATTTTCATT 57.814 33.333 4.21 1.79 0.00 2.57
2286 4640 7.778382 GGTAATCCCCTACAGTGTAATTTTCAT 59.222 37.037 4.21 0.00 0.00 2.57
2287 4641 7.114095 GGTAATCCCCTACAGTGTAATTTTCA 58.886 38.462 4.21 0.00 0.00 2.69
2288 4642 7.563888 GGTAATCCCCTACAGTGTAATTTTC 57.436 40.000 4.21 0.00 0.00 2.29
2305 4659 3.279434 CAGGCAAACAGTAGGGTAATCC 58.721 50.000 0.00 0.00 0.00 3.01
2306 4660 3.951663 ACAGGCAAACAGTAGGGTAATC 58.048 45.455 0.00 0.00 0.00 1.75
2307 4661 5.508280 TTACAGGCAAACAGTAGGGTAAT 57.492 39.130 0.00 0.00 0.00 1.89
2308 4662 4.978438 TTACAGGCAAACAGTAGGGTAA 57.022 40.909 0.00 0.00 0.00 2.85
2309 4663 4.978438 TTTACAGGCAAACAGTAGGGTA 57.022 40.909 0.00 0.00 0.00 3.69
2310 4664 3.868619 TTTACAGGCAAACAGTAGGGT 57.131 42.857 0.00 0.00 0.00 4.34
2334 4688 9.813826 CAACCCCTCTCATAATATAAATTCCTT 57.186 33.333 0.00 0.00 0.00 3.36
2335 4689 9.182642 TCAACCCCTCTCATAATATAAATTCCT 57.817 33.333 0.00 0.00 0.00 3.36
2336 4690 9.981460 ATCAACCCCTCTCATAATATAAATTCC 57.019 33.333 0.00 0.00 0.00 3.01
2343 4697 9.170890 TGAGTTAATCAACCCCTCTCATAATAT 57.829 33.333 0.00 0.00 34.02 1.28
2344 4698 8.561536 TGAGTTAATCAACCCCTCTCATAATA 57.438 34.615 0.00 0.00 34.02 0.98
2345 4699 7.451731 TGAGTTAATCAACCCCTCTCATAAT 57.548 36.000 0.00 0.00 34.02 1.28
2346 4700 6.884472 TGAGTTAATCAACCCCTCTCATAA 57.116 37.500 0.00 0.00 34.02 1.90
2347 4701 8.429641 GTTATGAGTTAATCAACCCCTCTCATA 58.570 37.037 0.00 0.00 42.53 2.15
2348 4702 5.983333 ATGAGTTAATCAACCCCTCTCAT 57.017 39.130 0.00 0.00 42.53 2.90
2349 4703 6.214615 TGTTATGAGTTAATCAACCCCTCTCA 59.785 38.462 0.00 0.00 42.53 3.27
2350 4704 6.650120 TGTTATGAGTTAATCAACCCCTCTC 58.350 40.000 0.00 0.00 42.53 3.20
2351 4705 6.636454 TGTTATGAGTTAATCAACCCCTCT 57.364 37.500 0.00 0.00 42.53 3.69
2352 4706 6.238759 GCATGTTATGAGTTAATCAACCCCTC 60.239 42.308 0.00 0.00 42.53 4.30
2353 4707 5.594317 GCATGTTATGAGTTAATCAACCCCT 59.406 40.000 0.00 0.00 42.53 4.79
2354 4708 5.359576 TGCATGTTATGAGTTAATCAACCCC 59.640 40.000 0.00 0.00 42.53 4.95
2355 4709 6.449635 TGCATGTTATGAGTTAATCAACCC 57.550 37.500 0.00 0.00 42.53 4.11
2356 4710 8.647226 GTTTTGCATGTTATGAGTTAATCAACC 58.353 33.333 0.00 0.00 42.53 3.77
2357 4711 9.190858 TGTTTTGCATGTTATGAGTTAATCAAC 57.809 29.630 0.00 0.00 42.53 3.18
2358 4712 9.926158 ATGTTTTGCATGTTATGAGTTAATCAA 57.074 25.926 0.00 0.00 37.72 2.57
2377 4731 9.932699 TCAGTTTGCAAAATAATTCATGTTTTG 57.067 25.926 14.67 11.96 42.65 2.44
2385 4739 8.772705 TGTTGGAATCAGTTTGCAAAATAATTC 58.227 29.630 21.81 21.81 45.68 2.17
2389 4743 6.202570 GCTTGTTGGAATCAGTTTGCAAAATA 59.797 34.615 14.67 2.51 45.68 1.40
2411 4765 5.817784 TCTCTAGTTACTACTGTCTGGCTT 58.182 41.667 0.00 0.00 35.78 4.35
2419 4773 8.789825 TGAACCTACTTCTCTAGTTACTACTG 57.210 38.462 0.00 0.00 38.33 2.74
2433 4787 6.262273 TGACCTTTGTTTGATGAACCTACTTC 59.738 38.462 0.00 0.00 37.45 3.01
2562 4916 8.890124 TGTTAGCTGTGTAACTGTTACATAAA 57.110 30.769 29.66 18.24 46.73 1.40
2571 4925 6.545504 ACATTTCTGTTAGCTGTGTAACTG 57.454 37.500 0.00 0.00 34.51 3.16
2588 4942 9.180678 CACTTGGACAATAGTAACAAACATTTC 57.819 33.333 0.00 0.00 0.00 2.17
2591 4945 7.817418 ACACTTGGACAATAGTAACAAACAT 57.183 32.000 0.00 0.00 0.00 2.71
2598 4952 6.704493 GTGAGTGAACACTTGGACAATAGTAA 59.296 38.462 8.87 0.00 42.66 2.24
2616 4970 9.595823 GGCATAGTTTTATTAGTTAGTGAGTGA 57.404 33.333 0.00 0.00 0.00 3.41
2617 4971 8.827677 GGGCATAGTTTTATTAGTTAGTGAGTG 58.172 37.037 0.00 0.00 0.00 3.51
2618 4972 8.545472 TGGGCATAGTTTTATTAGTTAGTGAGT 58.455 33.333 0.00 0.00 0.00 3.41
2619 4973 8.958119 TGGGCATAGTTTTATTAGTTAGTGAG 57.042 34.615 0.00 0.00 0.00 3.51
2636 4990 5.255687 TGGCACTATAAATGATGGGCATAG 58.744 41.667 0.00 0.00 35.78 2.23
2639 4993 3.117550 ACTGGCACTATAAATGATGGGCA 60.118 43.478 0.00 0.00 0.00 5.36
2673 5029 9.731819 CTCATAGCGAGACTAAATAGTAAACAA 57.268 33.333 0.00 0.00 45.45 2.83
2724 5084 1.205417 GTGCATTGCCTGTAAGCCATT 59.795 47.619 6.12 0.00 0.00 3.16
2774 5134 5.975939 GCAGCCTGCAGATATAAAGAAAAAG 59.024 40.000 17.39 0.00 44.26 2.27
2775 5135 5.894807 GCAGCCTGCAGATATAAAGAAAAA 58.105 37.500 17.39 0.00 44.26 1.94
2844 5212 1.165270 CACCGACAAGATTTCCACCC 58.835 55.000 0.00 0.00 0.00 4.61
3009 5414 7.647907 ATTTACAAAGCAGCTCAAGAAAATG 57.352 32.000 0.00 0.00 0.00 2.32
3233 8300 9.452287 TGTTTTAATCTTAAGCGTTATAAGGGT 57.548 29.630 4.11 4.11 32.43 4.34
3288 8355 7.054124 CCAACATGCTTAAGGGAGTAAGAATA 58.946 38.462 4.29 0.00 33.62 1.75
3380 8452 1.186200 TGGGGACACGAATGAGAGAG 58.814 55.000 0.00 0.00 33.40 3.20
3753 8826 9.716531 TGTTAGAATGGATAAGATGATGATGTC 57.283 33.333 0.00 0.00 0.00 3.06
3924 8997 9.646427 GGAGTAGCTAAGAATGAATAATAGGTG 57.354 37.037 0.00 0.00 0.00 4.00
4112 9185 2.536365 GATGTGTCAGCAATGCAATGG 58.464 47.619 8.35 0.00 0.00 3.16
4141 9214 4.847757 CACATTTTGCATAACTGAGTCACG 59.152 41.667 0.00 0.00 0.00 4.35
4226 9299 9.621629 TCAGTTAAAGATAAAGTTGGAGAACAA 57.378 29.630 0.00 0.00 34.17 2.83
4391 9464 4.517075 GGGATATAAGAGCAGGAAAAGTGC 59.483 45.833 0.00 0.00 41.54 4.40
4438 9511 7.805083 AGCAGAAATGAGGTACAGGATATAT 57.195 36.000 0.00 0.00 0.00 0.86
4572 9645 9.491675 TTCGGTCAGTACTCAATTATGTAAAAA 57.508 29.630 0.00 0.00 0.00 1.94
4596 9669 5.393461 CCTGCAATAGAAGTTGGAACCATTC 60.393 44.000 0.00 0.00 0.00 2.67
4598 9671 4.019174 CCTGCAATAGAAGTTGGAACCAT 58.981 43.478 0.00 0.00 0.00 3.55
4664 9737 2.433970 GGGACCTTCCTCTCTCAAGATG 59.566 54.545 0.00 0.00 36.57 2.90
4707 9780 2.421073 CGAAGTGACTGTATCGGTGGTA 59.579 50.000 0.00 0.00 0.00 3.25
4713 9786 2.847901 ACGTTCGAAGTGACTGTATCG 58.152 47.619 0.00 0.00 36.67 2.92
4718 9791 2.470821 AGGAAACGTTCGAAGTGACTG 58.529 47.619 0.00 0.00 0.00 3.51
4720 9793 3.938778 AAAGGAAACGTTCGAAGTGAC 57.061 42.857 0.00 0.00 0.00 3.67
4742 9894 9.482627 AAACTGTTTTTCTCACACACAATAAAA 57.517 25.926 0.00 0.00 0.00 1.52
4746 9898 8.921670 GTTTAAACTGTTTTTCTCACACACAAT 58.078 29.630 11.48 0.00 0.00 2.71
4747 9899 8.138712 AGTTTAAACTGTTTTTCTCACACACAA 58.861 29.630 19.94 0.00 37.98 3.33
4849 10185 0.539669 TCCACAGAACTCGAGGCTCA 60.540 55.000 18.41 0.84 0.00 4.26
4855 10191 1.248101 TGCCGATCCACAGAACTCGA 61.248 55.000 0.00 0.00 33.07 4.04
4882 10218 1.070758 AGCACGCCGAAGAATATGGAT 59.929 47.619 0.00 0.00 0.00 3.41
4888 10224 1.448540 CTCCAGCACGCCGAAGAAT 60.449 57.895 0.00 0.00 0.00 2.40
5011 10350 3.695606 GTGGAGTGAGGAGCCGCA 61.696 66.667 0.00 0.00 32.58 5.69
5012 10351 3.695606 TGTGGAGTGAGGAGCCGC 61.696 66.667 0.00 0.00 0.00 6.53
5013 10352 2.262915 GTGTGGAGTGAGGAGCCG 59.737 66.667 0.00 0.00 0.00 5.52
5014 10353 1.557269 ATGGTGTGGAGTGAGGAGCC 61.557 60.000 0.00 0.00 0.00 4.70
5015 10354 0.326264 AATGGTGTGGAGTGAGGAGC 59.674 55.000 0.00 0.00 0.00 4.70
5016 10355 2.093447 GGTAATGGTGTGGAGTGAGGAG 60.093 54.545 0.00 0.00 0.00 3.69
5017 10356 1.906574 GGTAATGGTGTGGAGTGAGGA 59.093 52.381 0.00 0.00 0.00 3.71
5018 10357 1.065418 GGGTAATGGTGTGGAGTGAGG 60.065 57.143 0.00 0.00 0.00 3.86
5019 10358 1.405526 CGGGTAATGGTGTGGAGTGAG 60.406 57.143 0.00 0.00 0.00 3.51
5020 10359 0.611200 CGGGTAATGGTGTGGAGTGA 59.389 55.000 0.00 0.00 0.00 3.41
5067 10406 8.310122 AGAAACATAAAGCCCATCACATAAAT 57.690 30.769 0.00 0.00 0.00 1.40
5085 10424 4.073293 ACAGTTCTGGAACGAGAAACAT 57.927 40.909 7.67 0.00 45.50 2.71
5086 10425 3.536956 ACAGTTCTGGAACGAGAAACA 57.463 42.857 7.67 0.00 45.50 2.83
5105 10444 7.119846 ACTCTTGAAACTGATTGTATGCCTTAC 59.880 37.037 0.00 0.00 0.00 2.34
5222 10567 9.883142 CCTTCTTCAGATTAAAAGACATAGTCT 57.117 33.333 0.00 0.00 45.64 3.24
5223 10568 9.103861 CCCTTCTTCAGATTAAAAGACATAGTC 57.896 37.037 0.00 0.00 31.46 2.59
5224 10569 7.554476 GCCCTTCTTCAGATTAAAAGACATAGT 59.446 37.037 0.00 0.00 31.46 2.12
5225 10570 7.012799 GGCCCTTCTTCAGATTAAAAGACATAG 59.987 40.741 0.00 0.00 31.46 2.23
5226 10571 6.828785 GGCCCTTCTTCAGATTAAAAGACATA 59.171 38.462 0.00 0.00 31.46 2.29
5227 10572 5.654209 GGCCCTTCTTCAGATTAAAAGACAT 59.346 40.000 0.00 0.00 31.46 3.06
5382 10727 6.685527 TGTTGTTGTTGAATAGTAACAGCA 57.314 33.333 0.00 0.00 44.02 4.41
5389 10734 8.103305 ACTCCTGATATGTTGTTGTTGAATAGT 58.897 33.333 0.00 0.00 0.00 2.12
5557 10915 3.823330 GTCGGCGATGAGTCCCGT 61.823 66.667 14.79 0.00 38.51 5.28
5563 10921 1.101635 TCTACCTGGTCGGCGATGAG 61.102 60.000 14.79 11.99 35.61 2.90
5566 10924 0.182061 TACTCTACCTGGTCGGCGAT 59.818 55.000 14.79 0.00 35.61 4.58
5581 10939 1.215647 CCTGGCGTCCACTGTACTC 59.784 63.158 0.00 0.00 0.00 2.59
5584 10942 3.373226 GACCTGGCGTCCACTGTA 58.627 61.111 0.00 0.00 35.23 2.74
5671 11029 2.616510 GGACAAGTTCCCTGTCTCCATG 60.617 54.545 3.24 0.00 38.70 3.66
5673 11031 1.056660 GGACAAGTTCCCTGTCTCCA 58.943 55.000 3.24 0.00 38.70 3.86
5674 11032 3.938109 GGACAAGTTCCCTGTCTCC 57.062 57.895 3.24 0.00 38.70 3.71
5789 11147 5.631481 GCCCACAGAAATCCTGAATACCTAA 60.631 44.000 0.00 0.00 45.78 2.69
5794 11152 4.524802 ATGCCCACAGAAATCCTGAATA 57.475 40.909 0.00 0.00 45.78 1.75
5811 11169 3.874392 ATAACAACAAGCCTGAATGCC 57.126 42.857 0.00 0.00 0.00 4.40
5829 11191 9.832445 CAGAGTAAGCCTTATTTCCTGTTAATA 57.168 33.333 0.00 0.00 0.00 0.98
5830 11192 8.548877 TCAGAGTAAGCCTTATTTCCTGTTAAT 58.451 33.333 0.00 0.00 0.00 1.40
5831 11193 7.822822 GTCAGAGTAAGCCTTATTTCCTGTTAA 59.177 37.037 0.00 0.00 0.00 2.01
5842 11204 2.423892 CAGCTCGTCAGAGTAAGCCTTA 59.576 50.000 0.00 0.00 46.03 2.69
5933 11295 4.564821 GGTTCTGTAGTATGCTTGACCCAA 60.565 45.833 0.00 0.00 0.00 4.12
5948 11310 2.967397 CAGTCCGGCGGTTCTGTA 59.033 61.111 29.93 11.29 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.