Multiple sequence alignment - TraesCS5D01G535700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G535700 chr5D 100.000 3764 0 0 1 3764 549549330 549545567 0.000000e+00 6951.0
1 TraesCS5D01G535700 chr5D 92.244 2063 133 15 864 2906 549430398 549428343 0.000000e+00 2898.0
2 TraesCS5D01G535700 chr5D 82.875 1635 223 36 1178 2764 549262020 549260395 0.000000e+00 1415.0
3 TraesCS5D01G535700 chr5D 81.056 1647 234 36 1178 2775 549229685 549228068 0.000000e+00 1242.0
4 TraesCS5D01G535700 chr5D 96.414 753 25 2 3013 3764 470564816 470565567 0.000000e+00 1240.0
5 TraesCS5D01G535700 chr5D 88.914 902 75 10 2118 3008 549489367 549488480 0.000000e+00 1088.0
6 TraesCS5D01G535700 chr5D 88.770 561 29 9 786 1337 549489908 549489373 0.000000e+00 656.0
7 TraesCS5D01G535700 chr5D 93.119 218 11 2 64 280 549432702 549432488 2.180000e-82 316.0
8 TraesCS5D01G535700 chr5D 77.355 499 62 20 321 791 438192402 438191927 8.070000e-62 248.0
9 TraesCS5D01G535700 chr5D 76.253 459 79 19 289 720 9499053 9499508 2.280000e-52 217.0
10 TraesCS5D01G535700 chr5D 97.143 70 1 1 788 856 549432494 549432425 2.380000e-22 117.0
11 TraesCS5D01G535700 chr5D 93.421 76 5 0 204 279 549489976 549489901 3.070000e-21 113.0
12 TraesCS5D01G535700 chr5D 87.805 82 8 1 1 82 404190277 404190356 1.110000e-15 95.3
13 TraesCS5D01G535700 chr5B 92.857 2156 136 12 857 2998 701052020 701049869 0.000000e+00 3112.0
14 TraesCS5D01G535700 chr5B 82.492 1645 231 39 1178 2775 700856493 700854859 0.000000e+00 1389.0
15 TraesCS5D01G535700 chr5B 88.525 366 28 9 822 1176 701053359 701052997 7.470000e-117 431.0
16 TraesCS5D01G535700 chr5B 89.778 225 13 3 63 280 701053596 701053375 2.860000e-71 279.0
17 TraesCS5D01G535700 chr5B 81.230 309 49 6 349 656 335801873 335801573 1.350000e-59 241.0
18 TraesCS5D01G535700 chr5B 80.952 315 46 13 345 656 335550771 335550468 1.750000e-58 237.0
19 TraesCS5D01G535700 chr5B 89.655 87 9 0 321 407 375615029 375614943 1.110000e-20 111.0
20 TraesCS5D01G535700 chr5B 86.486 74 9 1 715 788 560247799 560247727 3.120000e-11 80.5
21 TraesCS5D01G535700 chr2D 84.537 1772 213 30 1003 2764 110843361 110841641 0.000000e+00 1698.0
22 TraesCS5D01G535700 chr2D 96.405 751 27 0 3014 3764 138869074 138869824 0.000000e+00 1238.0
23 TraesCS5D01G535700 chr2D 96.138 751 29 0 3014 3764 48590990 48590240 0.000000e+00 1227.0
24 TraesCS5D01G535700 chr2D 96.138 751 28 1 3015 3764 345137687 345138437 0.000000e+00 1225.0
25 TraesCS5D01G535700 chr2D 77.075 253 25 16 556 786 32642090 32642331 8.540000e-22 115.0
26 TraesCS5D01G535700 chr2D 94.030 67 4 0 1 67 31708427 31708493 6.650000e-18 102.0
27 TraesCS5D01G535700 chr2B 83.973 1772 223 31 1003 2764 159971194 159969474 0.000000e+00 1642.0
28 TraesCS5D01G535700 chr2B 93.939 66 4 0 2 67 578147730 578147795 2.390000e-17 100.0
29 TraesCS5D01G535700 chr2A 85.109 1605 199 20 1164 2764 107182776 107181208 0.000000e+00 1604.0
30 TraesCS5D01G535700 chr2A 81.297 401 62 11 322 718 758314984 758315375 2.820000e-81 313.0
31 TraesCS5D01G535700 chr4A 82.422 1610 231 40 1178 2746 620704604 620703006 0.000000e+00 1358.0
32 TraesCS5D01G535700 chr3D 96.405 751 27 0 3014 3764 295132917 295133667 0.000000e+00 1238.0
33 TraesCS5D01G535700 chr3D 96.016 753 30 0 3012 3764 506209040 506209792 0.000000e+00 1225.0
34 TraesCS5D01G535700 chr7D 96.277 752 28 0 3013 3764 88315674 88314923 0.000000e+00 1234.0
35 TraesCS5D01G535700 chr7D 85.080 878 102 17 1178 2027 162823648 162822772 0.000000e+00 869.0
36 TraesCS5D01G535700 chr7D 92.754 69 5 0 1 69 80504194 80504126 2.390000e-17 100.0
37 TraesCS5D01G535700 chr4D 96.272 751 28 0 3014 3764 414582233 414582983 0.000000e+00 1232.0
38 TraesCS5D01G535700 chr4D 96.144 752 29 0 3013 3764 22629190 22629941 0.000000e+00 1229.0
39 TraesCS5D01G535700 chrUn 83.252 818 119 12 1210 2018 75777180 75777988 0.000000e+00 736.0
40 TraesCS5D01G535700 chrUn 83.252 818 119 12 1210 2018 228925104 228924296 0.000000e+00 736.0
41 TraesCS5D01G535700 chrUn 80.186 646 115 11 2092 2731 75745826 75746464 4.400000e-129 472.0
42 TraesCS5D01G535700 chrUn 79.630 594 109 10 2144 2731 228922465 228921878 2.090000e-112 416.0
43 TraesCS5D01G535700 chrUn 79.630 594 109 10 2144 2731 325066151 325065564 2.090000e-112 416.0
44 TraesCS5D01G535700 chrUn 77.673 636 131 10 2114 2746 76990017 76989390 9.870000e-101 377.0
45 TraesCS5D01G535700 chrUn 77.516 636 132 10 2114 2746 394209876 394209249 4.590000e-99 372.0
46 TraesCS5D01G535700 chr1A 78.434 779 156 9 1178 1953 10424872 10424103 7.260000e-137 497.0
47 TraesCS5D01G535700 chr6D 86.422 464 50 10 330 786 387049877 387049420 2.610000e-136 496.0
48 TraesCS5D01G535700 chr6D 75.893 448 58 19 362 786 455908609 455909029 2.310000e-42 183.0
49 TraesCS5D01G535700 chr6B 88.974 390 37 4 330 718 578407248 578406864 9.460000e-131 477.0
50 TraesCS5D01G535700 chr6B 77.830 636 130 10 2114 2746 76420684 76420057 2.120000e-102 383.0
51 TraesCS5D01G535700 chr6B 90.580 138 7 4 281 412 137460893 137460756 1.070000e-40 178.0
52 TraesCS5D01G535700 chr6B 85.185 81 11 1 712 792 224161451 224161530 8.670000e-12 82.4
53 TraesCS5D01G535700 chr6A 86.667 390 43 6 330 718 532342759 532342378 1.250000e-114 424.0
54 TraesCS5D01G535700 chr1D 79.944 359 43 14 449 785 8620151 8619800 1.750000e-58 237.0
55 TraesCS5D01G535700 chr1D 80.874 183 17 6 283 464 140044523 140044358 1.100000e-25 128.0
56 TraesCS5D01G535700 chr1D 83.607 122 14 3 598 718 18070190 18070074 3.970000e-20 110.0
57 TraesCS5D01G535700 chr1D 94.286 70 4 0 1 70 216282 216213 1.430000e-19 108.0
58 TraesCS5D01G535700 chr1D 96.667 60 2 0 653 712 386167810 386167869 2.390000e-17 100.0
59 TraesCS5D01G535700 chr1D 85.542 83 10 2 712 794 455044842 455044922 6.700000e-13 86.1
60 TraesCS5D01G535700 chr4B 94.118 68 4 0 1 68 26357679 26357746 1.850000e-18 104.0
61 TraesCS5D01G535700 chr1B 80.882 136 22 3 626 761 3927619 3927750 1.850000e-18 104.0
62 TraesCS5D01G535700 chr1B 93.939 66 4 0 1 66 634510141 634510076 2.390000e-17 100.0
63 TraesCS5D01G535700 chr3A 90.789 76 7 0 1 76 697786455 697786530 6.650000e-18 102.0
64 TraesCS5D01G535700 chr3A 93.939 66 4 0 1 66 671661773 671661838 2.390000e-17 100.0
65 TraesCS5D01G535700 chr3A 78.788 132 22 4 638 769 35990309 35990434 2.410000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G535700 chr5D 549545567 549549330 3763 True 6951.000000 6951 100.000000 1 3764 1 chr5D.!!$R4 3763
1 TraesCS5D01G535700 chr5D 549260395 549262020 1625 True 1415.000000 1415 82.875000 1178 2764 1 chr5D.!!$R3 1586
2 TraesCS5D01G535700 chr5D 549228068 549229685 1617 True 1242.000000 1242 81.056000 1178 2775 1 chr5D.!!$R2 1597
3 TraesCS5D01G535700 chr5D 470564816 470565567 751 False 1240.000000 1240 96.414000 3013 3764 1 chr5D.!!$F3 751
4 TraesCS5D01G535700 chr5D 549428343 549432702 4359 True 1110.333333 2898 94.168667 64 2906 3 chr5D.!!$R5 2842
5 TraesCS5D01G535700 chr5D 549488480 549489976 1496 True 619.000000 1088 90.368333 204 3008 3 chr5D.!!$R6 2804
6 TraesCS5D01G535700 chr5B 700854859 700856493 1634 True 1389.000000 1389 82.492000 1178 2775 1 chr5B.!!$R5 1597
7 TraesCS5D01G535700 chr5B 701049869 701053596 3727 True 1274.000000 3112 90.386667 63 2998 3 chr5B.!!$R6 2935
8 TraesCS5D01G535700 chr2D 110841641 110843361 1720 True 1698.000000 1698 84.537000 1003 2764 1 chr2D.!!$R2 1761
9 TraesCS5D01G535700 chr2D 138869074 138869824 750 False 1238.000000 1238 96.405000 3014 3764 1 chr2D.!!$F3 750
10 TraesCS5D01G535700 chr2D 48590240 48590990 750 True 1227.000000 1227 96.138000 3014 3764 1 chr2D.!!$R1 750
11 TraesCS5D01G535700 chr2D 345137687 345138437 750 False 1225.000000 1225 96.138000 3015 3764 1 chr2D.!!$F4 749
12 TraesCS5D01G535700 chr2B 159969474 159971194 1720 True 1642.000000 1642 83.973000 1003 2764 1 chr2B.!!$R1 1761
13 TraesCS5D01G535700 chr2A 107181208 107182776 1568 True 1604.000000 1604 85.109000 1164 2764 1 chr2A.!!$R1 1600
14 TraesCS5D01G535700 chr4A 620703006 620704604 1598 True 1358.000000 1358 82.422000 1178 2746 1 chr4A.!!$R1 1568
15 TraesCS5D01G535700 chr3D 295132917 295133667 750 False 1238.000000 1238 96.405000 3014 3764 1 chr3D.!!$F1 750
16 TraesCS5D01G535700 chr3D 506209040 506209792 752 False 1225.000000 1225 96.016000 3012 3764 1 chr3D.!!$F2 752
17 TraesCS5D01G535700 chr7D 88314923 88315674 751 True 1234.000000 1234 96.277000 3013 3764 1 chr7D.!!$R2 751
18 TraesCS5D01G535700 chr7D 162822772 162823648 876 True 869.000000 869 85.080000 1178 2027 1 chr7D.!!$R3 849
19 TraesCS5D01G535700 chr4D 414582233 414582983 750 False 1232.000000 1232 96.272000 3014 3764 1 chr4D.!!$F2 750
20 TraesCS5D01G535700 chr4D 22629190 22629941 751 False 1229.000000 1229 96.144000 3013 3764 1 chr4D.!!$F1 751
21 TraesCS5D01G535700 chrUn 75777180 75777988 808 False 736.000000 736 83.252000 1210 2018 1 chrUn.!!$F2 808
22 TraesCS5D01G535700 chrUn 228921878 228925104 3226 True 576.000000 736 81.441000 1210 2731 2 chrUn.!!$R4 1521
23 TraesCS5D01G535700 chrUn 75745826 75746464 638 False 472.000000 472 80.186000 2092 2731 1 chrUn.!!$F1 639
24 TraesCS5D01G535700 chrUn 325065564 325066151 587 True 416.000000 416 79.630000 2144 2731 1 chrUn.!!$R2 587
25 TraesCS5D01G535700 chrUn 76989390 76990017 627 True 377.000000 377 77.673000 2114 2746 1 chrUn.!!$R1 632
26 TraesCS5D01G535700 chrUn 394209249 394209876 627 True 372.000000 372 77.516000 2114 2746 1 chrUn.!!$R3 632
27 TraesCS5D01G535700 chr1A 10424103 10424872 769 True 497.000000 497 78.434000 1178 1953 1 chr1A.!!$R1 775
28 TraesCS5D01G535700 chr6B 76420057 76420684 627 True 383.000000 383 77.830000 2114 2746 1 chr6B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 321 0.108424 AAGTCATGTCGAGCCAGCTC 60.108 55.0 9.67 9.67 39.55 4.09 F
365 373 0.109226 GTTAGCTTGGCTCGACTCGT 60.109 55.0 0.00 0.00 40.44 4.18 F
759 767 0.247974 GCTACTCGTTTAGCTCGCGA 60.248 55.0 9.26 9.26 41.24 5.87 F
770 778 0.315568 AGCTCGCGAGTTTCTGAGTT 59.684 50.0 34.46 4.56 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 4905 0.322816 AGACGTAGCGGGTGAGGTTA 60.323 55.000 0.00 0.00 0.00 2.85 R
2334 7464 1.794116 GCAACATGTGGCACATTGAAC 59.206 47.619 29.57 16.01 44.52 3.18 R
2571 7701 0.321564 TGGTTGTCCCAAGCGATGAG 60.322 55.000 0.00 0.00 41.50 2.90 R
2764 7894 0.537188 TCCAGCCGACCAAAGATCTC 59.463 55.000 0.00 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.918630 AAAGCGTTTAGATAACTACTTTAGTGA 57.081 29.630 0.00 0.00 39.39 3.41
31 32 9.733219 AGCGTTTAGATAACTACTTTAGTGATC 57.267 33.333 3.29 3.29 44.00 2.92
42 43 9.978044 AACTACTTTAGTGATCTAAACGTTCTT 57.022 29.630 0.00 0.00 40.05 2.52
71 72 9.670442 ATTAGTATACAGAGGGATTACTTTCCA 57.330 33.333 5.50 0.00 37.53 3.53
112 113 9.533831 TGCAATCTATCAGTATTCAGAGGTATA 57.466 33.333 0.00 0.00 0.00 1.47
215 223 6.175712 TCTTCACCAAAACAAAACAATTGC 57.824 33.333 5.05 0.00 0.00 3.56
273 281 5.633601 TGTTCAAACGTGCACAAAATAAACA 59.366 32.000 18.64 15.43 27.22 2.83
274 282 6.311445 TGTTCAAACGTGCACAAAATAAACAT 59.689 30.769 18.64 0.00 27.22 2.71
275 283 6.266203 TCAAACGTGCACAAAATAAACATG 57.734 33.333 18.64 0.00 0.00 3.21
276 284 4.707210 AACGTGCACAAAATAAACATGC 57.293 36.364 18.64 0.00 36.81 4.06
277 285 3.711086 ACGTGCACAAAATAAACATGCA 58.289 36.364 18.64 0.00 43.70 3.96
284 292 7.208777 TGCACAAAATAAACATGCATATAGGG 58.791 34.615 0.00 0.00 41.18 3.53
285 293 6.646240 GCACAAAATAAACATGCATATAGGGG 59.354 38.462 0.00 0.00 36.30 4.79
286 294 7.686615 GCACAAAATAAACATGCATATAGGGGT 60.687 37.037 0.00 0.00 36.30 4.95
287 295 7.652909 CACAAAATAAACATGCATATAGGGGTG 59.347 37.037 0.00 0.00 0.00 4.61
288 296 6.916360 AAATAAACATGCATATAGGGGTGG 57.084 37.500 0.00 0.00 0.00 4.61
289 297 5.858876 ATAAACATGCATATAGGGGTGGA 57.141 39.130 0.00 0.00 0.00 4.02
290 298 4.534647 AAACATGCATATAGGGGTGGAA 57.465 40.909 0.00 0.00 0.00 3.53
291 299 4.747265 AACATGCATATAGGGGTGGAAT 57.253 40.909 0.00 0.00 0.00 3.01
292 300 4.747265 ACATGCATATAGGGGTGGAATT 57.253 40.909 0.00 0.00 0.00 2.17
293 301 4.666512 ACATGCATATAGGGGTGGAATTC 58.333 43.478 0.00 0.00 0.00 2.17
294 302 4.106179 ACATGCATATAGGGGTGGAATTCA 59.894 41.667 7.93 0.00 0.00 2.57
295 303 4.805140 TGCATATAGGGGTGGAATTCAA 57.195 40.909 7.93 0.00 0.00 2.69
296 304 4.728772 TGCATATAGGGGTGGAATTCAAG 58.271 43.478 7.93 0.00 0.00 3.02
297 305 4.167892 TGCATATAGGGGTGGAATTCAAGT 59.832 41.667 7.93 0.00 0.00 3.16
298 306 4.762251 GCATATAGGGGTGGAATTCAAGTC 59.238 45.833 7.93 0.00 0.00 3.01
299 307 5.690097 GCATATAGGGGTGGAATTCAAGTCA 60.690 44.000 7.93 0.00 0.00 3.41
300 308 6.546484 CATATAGGGGTGGAATTCAAGTCAT 58.454 40.000 7.93 0.00 0.00 3.06
301 309 3.091633 AGGGGTGGAATTCAAGTCATG 57.908 47.619 7.93 0.00 0.00 3.07
302 310 2.379907 AGGGGTGGAATTCAAGTCATGT 59.620 45.455 7.93 0.00 0.00 3.21
303 311 2.755103 GGGGTGGAATTCAAGTCATGTC 59.245 50.000 7.93 0.00 0.00 3.06
304 312 2.420022 GGGTGGAATTCAAGTCATGTCG 59.580 50.000 7.93 0.00 0.00 4.35
305 313 3.334691 GGTGGAATTCAAGTCATGTCGA 58.665 45.455 7.93 0.00 0.00 4.20
306 314 3.372206 GGTGGAATTCAAGTCATGTCGAG 59.628 47.826 7.93 0.00 0.00 4.04
307 315 3.002791 TGGAATTCAAGTCATGTCGAGC 58.997 45.455 7.93 0.00 0.00 5.03
308 316 2.352960 GGAATTCAAGTCATGTCGAGCC 59.647 50.000 7.93 0.00 0.00 4.70
309 317 2.768253 ATTCAAGTCATGTCGAGCCA 57.232 45.000 0.00 0.00 0.00 4.75
310 318 2.084610 TTCAAGTCATGTCGAGCCAG 57.915 50.000 0.00 0.00 0.00 4.85
311 319 0.390340 TCAAGTCATGTCGAGCCAGC 60.390 55.000 0.00 0.00 0.00 4.85
312 320 0.390866 CAAGTCATGTCGAGCCAGCT 60.391 55.000 0.00 0.00 0.00 4.24
313 321 0.108424 AAGTCATGTCGAGCCAGCTC 60.108 55.000 9.67 9.67 39.55 4.09
326 334 3.068691 AGCTCGGCTGGCTCGTTA 61.069 61.111 2.97 0.00 37.57 3.18
327 335 2.583593 GCTCGGCTGGCTCGTTAG 60.584 66.667 0.00 0.00 0.00 2.34
328 336 3.064987 GCTCGGCTGGCTCGTTAGA 62.065 63.158 0.00 0.00 0.00 2.10
344 352 7.541743 CTCGTTAGAGCTCGTTAAGATAATG 57.458 40.000 8.37 5.41 37.73 1.90
345 353 7.255491 TCGTTAGAGCTCGTTAAGATAATGA 57.745 36.000 8.37 7.64 0.00 2.57
346 354 7.353497 TCGTTAGAGCTCGTTAAGATAATGAG 58.647 38.462 8.37 12.77 36.59 2.90
347 355 7.012138 TCGTTAGAGCTCGTTAAGATAATGAGT 59.988 37.037 8.37 7.33 36.07 3.41
348 356 7.644551 CGTTAGAGCTCGTTAAGATAATGAGTT 59.355 37.037 8.37 12.54 36.07 3.01
349 357 9.947669 GTTAGAGCTCGTTAAGATAATGAGTTA 57.052 33.333 8.37 7.95 36.07 2.24
351 359 7.142680 AGAGCTCGTTAAGATAATGAGTTAGC 58.857 38.462 8.37 7.02 36.07 3.09
352 360 7.013846 AGAGCTCGTTAAGATAATGAGTTAGCT 59.986 37.037 8.37 10.56 38.13 3.32
353 361 7.493367 AGCTCGTTAAGATAATGAGTTAGCTT 58.507 34.615 16.55 4.42 45.57 3.74
354 362 7.436673 AGCTCGTTAAGATAATGAGTTAGCTTG 59.563 37.037 16.55 0.00 44.00 4.01
355 363 7.306866 GCTCGTTAAGATAATGAGTTAGCTTGG 60.307 40.741 16.55 0.48 44.00 3.61
356 364 6.479001 TCGTTAAGATAATGAGTTAGCTTGGC 59.521 38.462 8.47 2.14 44.00 4.52
357 365 6.480320 CGTTAAGATAATGAGTTAGCTTGGCT 59.520 38.462 8.47 0.00 44.00 4.75
358 366 7.306866 CGTTAAGATAATGAGTTAGCTTGGCTC 60.307 40.741 8.47 0.00 44.00 4.70
359 367 4.626042 AGATAATGAGTTAGCTTGGCTCG 58.374 43.478 0.00 0.00 40.44 5.03
360 368 4.342378 AGATAATGAGTTAGCTTGGCTCGA 59.658 41.667 0.00 0.00 40.44 4.04
361 369 2.301577 ATGAGTTAGCTTGGCTCGAC 57.698 50.000 0.00 0.00 40.44 4.20
362 370 1.257743 TGAGTTAGCTTGGCTCGACT 58.742 50.000 0.00 7.76 40.44 4.18
363 371 1.202582 TGAGTTAGCTTGGCTCGACTC 59.797 52.381 19.63 19.63 44.62 3.36
364 372 0.171455 AGTTAGCTTGGCTCGACTCG 59.829 55.000 0.00 0.00 40.44 4.18
365 373 0.109226 GTTAGCTTGGCTCGACTCGT 60.109 55.000 0.00 0.00 40.44 4.18
366 374 0.601558 TTAGCTTGGCTCGACTCGTT 59.398 50.000 0.00 0.00 40.44 3.85
367 375 1.456296 TAGCTTGGCTCGACTCGTTA 58.544 50.000 0.00 0.00 40.44 3.18
368 376 0.601558 AGCTTGGCTCGACTCGTTAA 59.398 50.000 0.00 0.00 30.62 2.01
369 377 0.714439 GCTTGGCTCGACTCGTTAAC 59.286 55.000 0.00 0.00 0.00 2.01
370 378 1.933500 GCTTGGCTCGACTCGTTAACA 60.934 52.381 6.39 0.00 0.00 2.41
371 379 2.607187 CTTGGCTCGACTCGTTAACAT 58.393 47.619 6.39 0.00 0.00 2.71
372 380 3.766151 CTTGGCTCGACTCGTTAACATA 58.234 45.455 6.39 0.00 0.00 2.29
373 381 3.853831 TGGCTCGACTCGTTAACATAA 57.146 42.857 6.39 0.00 0.00 1.90
374 382 3.504863 TGGCTCGACTCGTTAACATAAC 58.495 45.455 6.39 0.00 0.00 1.89
375 383 2.529090 GGCTCGACTCGTTAACATAACG 59.471 50.000 14.63 14.63 44.29 3.18
388 396 9.571810 TCGTTAACATAACGAGCTTAGATTAAA 57.428 29.630 18.30 0.00 46.21 1.52
393 401 8.116624 ACATAACGAGCTTAGATTAAAACTCG 57.883 34.615 8.52 8.52 43.93 4.18
394 402 7.222224 ACATAACGAGCTTAGATTAAAACTCGG 59.778 37.037 13.88 0.07 43.26 4.63
395 403 5.069501 ACGAGCTTAGATTAAAACTCGGT 57.930 39.130 13.88 0.00 43.26 4.69
396 404 5.476614 ACGAGCTTAGATTAAAACTCGGTT 58.523 37.500 13.88 0.00 43.26 4.44
397 405 5.575995 ACGAGCTTAGATTAAAACTCGGTTC 59.424 40.000 13.88 5.36 43.26 3.62
398 406 5.275788 CGAGCTTAGATTAAAACTCGGTTCG 60.276 44.000 0.00 0.00 39.14 3.95
399 407 5.717119 AGCTTAGATTAAAACTCGGTTCGA 58.283 37.500 0.00 0.00 0.00 3.71
400 408 5.575995 AGCTTAGATTAAAACTCGGTTCGAC 59.424 40.000 0.00 0.00 0.00 4.20
401 409 5.575995 GCTTAGATTAAAACTCGGTTCGACT 59.424 40.000 0.00 0.00 0.00 4.18
402 410 6.237516 GCTTAGATTAAAACTCGGTTCGACTC 60.238 42.308 0.00 0.00 0.00 3.36
403 411 5.130292 AGATTAAAACTCGGTTCGACTCA 57.870 39.130 0.00 0.00 0.00 3.41
404 412 5.721232 AGATTAAAACTCGGTTCGACTCAT 58.279 37.500 0.00 0.00 0.00 2.90
405 413 5.577164 AGATTAAAACTCGGTTCGACTCATG 59.423 40.000 0.00 0.00 0.00 3.07
406 414 2.814280 AAACTCGGTTCGACTCATGT 57.186 45.000 0.00 0.00 0.00 3.21
407 415 3.928727 AAACTCGGTTCGACTCATGTA 57.071 42.857 0.00 0.00 0.00 2.29
408 416 3.928727 AACTCGGTTCGACTCATGTAA 57.071 42.857 0.00 0.00 0.00 2.41
409 417 3.213249 ACTCGGTTCGACTCATGTAAC 57.787 47.619 0.00 0.00 0.00 2.50
410 418 2.818432 ACTCGGTTCGACTCATGTAACT 59.182 45.455 0.00 0.00 0.00 2.24
411 419 3.119919 ACTCGGTTCGACTCATGTAACTC 60.120 47.826 0.00 0.00 0.00 3.01
412 420 2.159612 TCGGTTCGACTCATGTAACTCG 60.160 50.000 0.00 0.00 0.00 4.18
413 421 1.918609 GGTTCGACTCATGTAACTCGC 59.081 52.381 0.00 0.00 0.00 5.03
414 422 1.578023 GTTCGACTCATGTAACTCGCG 59.422 52.381 0.00 0.00 0.00 5.87
415 423 1.081094 TCGACTCATGTAACTCGCGA 58.919 50.000 9.26 9.26 0.00 5.87
416 424 1.062148 TCGACTCATGTAACTCGCGAG 59.938 52.381 33.45 33.45 0.00 5.03
417 425 1.192793 GACTCATGTAACTCGCGAGC 58.807 55.000 34.83 19.69 0.00 5.03
418 426 0.811915 ACTCATGTAACTCGCGAGCT 59.188 50.000 34.83 26.16 0.00 4.09
419 427 2.014857 ACTCATGTAACTCGCGAGCTA 58.985 47.619 34.83 24.98 0.00 3.32
420 428 2.032302 ACTCATGTAACTCGCGAGCTAG 59.968 50.000 34.83 18.86 0.00 3.42
421 429 1.124462 CATGTAACTCGCGAGCTAGC 58.876 55.000 34.83 21.84 0.00 3.42
422 430 1.025812 ATGTAACTCGCGAGCTAGCT 58.974 50.000 34.83 19.45 34.40 3.32
423 431 0.377554 TGTAACTCGCGAGCTAGCTC 59.622 55.000 34.83 31.12 39.55 4.09
434 442 3.134021 GAGCTAGCTCGTTTAACTCGT 57.866 47.619 28.04 0.00 33.06 4.18
435 443 3.500014 GAGCTAGCTCGTTTAACTCGTT 58.500 45.455 28.04 0.00 33.06 3.85
436 444 4.656041 GAGCTAGCTCGTTTAACTCGTTA 58.344 43.478 28.04 0.00 33.06 3.18
437 445 5.051891 AGCTAGCTCGTTTAACTCGTTAA 57.948 39.130 12.68 0.00 33.63 2.01
438 446 5.464168 AGCTAGCTCGTTTAACTCGTTAAA 58.536 37.500 12.68 10.11 41.23 1.52
452 460 9.677567 TTAACTCGTTAAACTTGTTATAGACGT 57.322 29.630 0.00 0.00 32.64 4.34
453 461 7.558435 ACTCGTTAAACTTGTTATAGACGTG 57.442 36.000 0.00 0.00 0.00 4.49
454 462 7.362662 ACTCGTTAAACTTGTTATAGACGTGA 58.637 34.615 0.00 0.00 0.00 4.35
455 463 7.862372 ACTCGTTAAACTTGTTATAGACGTGAA 59.138 33.333 0.00 0.00 0.00 3.18
456 464 8.746922 TCGTTAAACTTGTTATAGACGTGAAT 57.253 30.769 0.00 0.00 0.00 2.57
457 465 9.838975 TCGTTAAACTTGTTATAGACGTGAATA 57.161 29.630 0.00 0.00 0.00 1.75
532 540 9.944663 TTGTAGACACATAATTTTTCTTCACAC 57.055 29.630 0.00 0.00 33.76 3.82
533 541 9.114952 TGTAGACACATAATTTTTCTTCACACA 57.885 29.630 0.00 0.00 0.00 3.72
536 544 8.849168 AGACACATAATTTTTCTTCACACATCA 58.151 29.630 0.00 0.00 0.00 3.07
537 545 8.801715 ACACATAATTTTTCTTCACACATCAC 57.198 30.769 0.00 0.00 0.00 3.06
538 546 8.412456 ACACATAATTTTTCTTCACACATCACA 58.588 29.630 0.00 0.00 0.00 3.58
539 547 8.908678 CACATAATTTTTCTTCACACATCACAG 58.091 33.333 0.00 0.00 0.00 3.66
540 548 7.596248 ACATAATTTTTCTTCACACATCACAGC 59.404 33.333 0.00 0.00 0.00 4.40
541 549 4.979943 TTTTTCTTCACACATCACAGCA 57.020 36.364 0.00 0.00 0.00 4.41
542 550 4.979943 TTTTCTTCACACATCACAGCAA 57.020 36.364 0.00 0.00 0.00 3.91
543 551 5.518848 TTTTCTTCACACATCACAGCAAT 57.481 34.783 0.00 0.00 0.00 3.56
544 552 4.754372 TTCTTCACACATCACAGCAATC 57.246 40.909 0.00 0.00 0.00 2.67
545 553 3.742385 TCTTCACACATCACAGCAATCA 58.258 40.909 0.00 0.00 0.00 2.57
546 554 4.136051 TCTTCACACATCACAGCAATCAA 58.864 39.130 0.00 0.00 0.00 2.57
547 555 3.902261 TCACACATCACAGCAATCAAC 57.098 42.857 0.00 0.00 0.00 3.18
548 556 3.212685 TCACACATCACAGCAATCAACA 58.787 40.909 0.00 0.00 0.00 3.33
549 557 3.631227 TCACACATCACAGCAATCAACAA 59.369 39.130 0.00 0.00 0.00 2.83
550 558 4.278919 TCACACATCACAGCAATCAACAAT 59.721 37.500 0.00 0.00 0.00 2.71
551 559 4.986034 CACACATCACAGCAATCAACAATT 59.014 37.500 0.00 0.00 0.00 2.32
552 560 5.464057 CACACATCACAGCAATCAACAATTT 59.536 36.000 0.00 0.00 0.00 1.82
553 561 6.641723 CACACATCACAGCAATCAACAATTTA 59.358 34.615 0.00 0.00 0.00 1.40
554 562 6.642131 ACACATCACAGCAATCAACAATTTAC 59.358 34.615 0.00 0.00 0.00 2.01
555 563 6.641723 CACATCACAGCAATCAACAATTTACA 59.358 34.615 0.00 0.00 0.00 2.41
556 564 6.642131 ACATCACAGCAATCAACAATTTACAC 59.358 34.615 0.00 0.00 0.00 2.90
557 565 5.527951 TCACAGCAATCAACAATTTACACC 58.472 37.500 0.00 0.00 0.00 4.16
558 566 5.068329 TCACAGCAATCAACAATTTACACCA 59.932 36.000 0.00 0.00 0.00 4.17
559 567 5.752472 CACAGCAATCAACAATTTACACCAA 59.248 36.000 0.00 0.00 0.00 3.67
560 568 6.257411 CACAGCAATCAACAATTTACACCAAA 59.743 34.615 0.00 0.00 0.00 3.28
561 569 6.479660 ACAGCAATCAACAATTTACACCAAAG 59.520 34.615 0.00 0.00 0.00 2.77
562 570 5.990996 AGCAATCAACAATTTACACCAAAGG 59.009 36.000 0.00 0.00 0.00 3.11
563 571 5.988561 GCAATCAACAATTTACACCAAAGGA 59.011 36.000 0.00 0.00 0.00 3.36
564 572 6.481644 GCAATCAACAATTTACACCAAAGGAA 59.518 34.615 0.00 0.00 0.00 3.36
565 573 7.011857 GCAATCAACAATTTACACCAAAGGAAA 59.988 33.333 0.00 0.00 0.00 3.13
566 574 8.887717 CAATCAACAATTTACACCAAAGGAAAA 58.112 29.630 0.00 0.00 0.00 2.29
567 575 7.835634 TCAACAATTTACACCAAAGGAAAAC 57.164 32.000 0.00 0.00 0.00 2.43
568 576 7.616313 TCAACAATTTACACCAAAGGAAAACT 58.384 30.769 0.00 0.00 0.00 2.66
569 577 8.097662 TCAACAATTTACACCAAAGGAAAACTT 58.902 29.630 0.00 0.00 42.52 2.66
570 578 7.841915 ACAATTTACACCAAAGGAAAACTTG 57.158 32.000 0.00 0.00 39.96 3.16
571 579 6.821160 ACAATTTACACCAAAGGAAAACTTGG 59.179 34.615 0.00 0.00 39.96 3.61
572 580 6.553953 ATTTACACCAAAGGAAAACTTGGT 57.446 33.333 0.62 0.62 39.96 3.67
573 581 7.663043 ATTTACACCAAAGGAAAACTTGGTA 57.337 32.000 6.18 0.00 39.96 3.25
574 582 4.994907 ACACCAAAGGAAAACTTGGTAC 57.005 40.909 6.18 0.00 39.96 3.34
575 583 4.345854 ACACCAAAGGAAAACTTGGTACA 58.654 39.130 6.18 0.00 39.96 2.90
592 600 6.471233 TGGTACAATCCAAAAATGACAACA 57.529 33.333 0.00 0.00 34.24 3.33
593 601 6.878317 TGGTACAATCCAAAAATGACAACAA 58.122 32.000 0.00 0.00 34.24 2.83
594 602 7.504403 TGGTACAATCCAAAAATGACAACAAT 58.496 30.769 0.00 0.00 34.24 2.71
595 603 7.655328 TGGTACAATCCAAAAATGACAACAATC 59.345 33.333 0.00 0.00 34.24 2.67
596 604 7.872483 GGTACAATCCAAAAATGACAACAATCT 59.128 33.333 0.00 0.00 0.00 2.40
597 605 9.906660 GTACAATCCAAAAATGACAACAATCTA 57.093 29.630 0.00 0.00 0.00 1.98
598 606 8.816640 ACAATCCAAAAATGACAACAATCTAC 57.183 30.769 0.00 0.00 0.00 2.59
599 607 8.420222 ACAATCCAAAAATGACAACAATCTACA 58.580 29.630 0.00 0.00 0.00 2.74
600 608 8.702438 CAATCCAAAAATGACAACAATCTACAC 58.298 33.333 0.00 0.00 0.00 2.90
601 609 7.340122 TCCAAAAATGACAACAATCTACACA 57.660 32.000 0.00 0.00 0.00 3.72
602 610 7.776107 TCCAAAAATGACAACAATCTACACAA 58.224 30.769 0.00 0.00 0.00 3.33
603 611 8.420222 TCCAAAAATGACAACAATCTACACAAT 58.580 29.630 0.00 0.00 0.00 2.71
604 612 8.489559 CCAAAAATGACAACAATCTACACAATG 58.510 33.333 0.00 0.00 0.00 2.82
605 613 9.033481 CAAAAATGACAACAATCTACACAATGT 57.967 29.630 0.00 0.00 0.00 2.71
606 614 9.598517 AAAAATGACAACAATCTACACAATGTT 57.401 25.926 0.00 0.00 36.49 2.71
623 631 9.102757 ACACAATGTTGATACTTATCTCATGTC 57.897 33.333 0.00 0.00 32.77 3.06
624 632 9.101655 CACAATGTTGATACTTATCTCATGTCA 57.898 33.333 0.00 0.00 32.77 3.58
625 633 9.102757 ACAATGTTGATACTTATCTCATGTCAC 57.897 33.333 0.00 0.00 32.77 3.67
626 634 9.322773 CAATGTTGATACTTATCTCATGTCACT 57.677 33.333 0.00 0.00 32.77 3.41
627 635 9.896645 AATGTTGATACTTATCTCATGTCACTT 57.103 29.630 0.00 0.00 32.77 3.16
628 636 9.896645 ATGTTGATACTTATCTCATGTCACTTT 57.103 29.630 0.00 0.00 33.88 2.66
629 637 9.725019 TGTTGATACTTATCTCATGTCACTTTT 57.275 29.630 0.00 0.00 33.88 2.27
630 638 9.979270 GTTGATACTTATCTCATGTCACTTTTG 57.021 33.333 0.00 0.00 33.88 2.44
631 639 9.942850 TTGATACTTATCTCATGTCACTTTTGA 57.057 29.630 0.00 0.00 33.88 2.69
640 648 7.362662 TCTCATGTCACTTTTGATTAACAAGC 58.637 34.615 0.00 0.00 39.77 4.01
641 649 7.229306 TCTCATGTCACTTTTGATTAACAAGCT 59.771 33.333 0.00 0.00 39.77 3.74
642 650 7.715657 TCATGTCACTTTTGATTAACAAGCTT 58.284 30.769 0.00 0.00 39.77 3.74
643 651 8.845227 TCATGTCACTTTTGATTAACAAGCTTA 58.155 29.630 0.00 0.00 39.77 3.09
644 652 9.462174 CATGTCACTTTTGATTAACAAGCTTAA 57.538 29.630 0.00 0.00 39.77 1.85
645 653 8.850454 TGTCACTTTTGATTAACAAGCTTAAC 57.150 30.769 0.00 0.00 39.77 2.01
646 654 7.642194 TGTCACTTTTGATTAACAAGCTTAACG 59.358 33.333 0.00 0.00 39.77 3.18
647 655 7.853929 GTCACTTTTGATTAACAAGCTTAACGA 59.146 33.333 0.00 0.00 39.77 3.85
648 656 8.067784 TCACTTTTGATTAACAAGCTTAACGAG 58.932 33.333 0.00 0.00 39.77 4.18
649 657 7.855904 CACTTTTGATTAACAAGCTTAACGAGT 59.144 33.333 0.00 0.00 39.77 4.18
650 658 8.068380 ACTTTTGATTAACAAGCTTAACGAGTC 58.932 33.333 0.00 0.00 39.77 3.36
651 659 7.485418 TTTGATTAACAAGCTTAACGAGTCA 57.515 32.000 0.00 0.00 39.77 3.41
652 660 7.485418 TTGATTAACAAGCTTAACGAGTCAA 57.515 32.000 0.00 3.63 34.20 3.18
653 661 7.485418 TGATTAACAAGCTTAACGAGTCAAA 57.515 32.000 0.00 0.00 0.00 2.69
654 662 7.921787 TGATTAACAAGCTTAACGAGTCAAAA 58.078 30.769 0.00 0.00 0.00 2.44
655 663 7.853929 TGATTAACAAGCTTAACGAGTCAAAAC 59.146 33.333 0.00 0.00 0.00 2.43
656 664 4.191662 ACAAGCTTAACGAGTCAAAACG 57.808 40.909 0.00 0.00 0.00 3.60
657 665 3.866910 ACAAGCTTAACGAGTCAAAACGA 59.133 39.130 0.00 0.00 0.00 3.85
658 666 4.025979 ACAAGCTTAACGAGTCAAAACGAG 60.026 41.667 0.00 0.00 0.00 4.18
659 667 3.714391 AGCTTAACGAGTCAAAACGAGT 58.286 40.909 0.00 0.00 0.00 4.18
660 668 4.863491 AGCTTAACGAGTCAAAACGAGTA 58.137 39.130 0.00 0.00 0.00 2.59
661 669 5.284079 AGCTTAACGAGTCAAAACGAGTAA 58.716 37.500 0.00 0.00 0.00 2.24
662 670 5.174579 AGCTTAACGAGTCAAAACGAGTAAC 59.825 40.000 0.00 0.00 0.00 2.50
663 671 5.174579 GCTTAACGAGTCAAAACGAGTAACT 59.825 40.000 0.00 0.00 0.00 2.24
664 672 6.292008 GCTTAACGAGTCAAAACGAGTAACTT 60.292 38.462 0.00 0.00 0.00 2.66
665 673 5.385396 AACGAGTCAAAACGAGTAACTTG 57.615 39.130 0.00 0.00 0.00 3.16
666 674 4.427312 ACGAGTCAAAACGAGTAACTTGT 58.573 39.130 0.00 0.00 31.28 3.16
667 675 4.866486 ACGAGTCAAAACGAGTAACTTGTT 59.134 37.500 0.00 0.00 39.51 2.83
668 676 6.035843 ACGAGTCAAAACGAGTAACTTGTTA 58.964 36.000 0.00 0.00 37.12 2.41
669 677 6.197842 ACGAGTCAAAACGAGTAACTTGTTAG 59.802 38.462 0.00 0.00 37.12 2.34
670 678 6.283161 AGTCAAAACGAGTAACTTGTTAGC 57.717 37.500 0.00 0.00 37.12 3.09
671 679 6.047231 AGTCAAAACGAGTAACTTGTTAGCT 58.953 36.000 0.00 0.00 37.12 3.32
672 680 6.200475 AGTCAAAACGAGTAACTTGTTAGCTC 59.800 38.462 0.00 4.07 37.12 4.09
675 683 1.918609 CGAGTAACTTGTTAGCTCGGC 59.081 52.381 22.42 4.26 43.41 5.54
676 684 2.415625 CGAGTAACTTGTTAGCTCGGCT 60.416 50.000 22.42 3.87 43.41 5.52
677 685 3.180613 GAGTAACTTGTTAGCTCGGCTC 58.819 50.000 1.46 0.00 40.44 4.70
678 686 1.918609 GTAACTTGTTAGCTCGGCTCG 59.081 52.381 1.46 0.00 40.44 5.03
679 687 0.317479 AACTTGTTAGCTCGGCTCGT 59.683 50.000 1.46 0.00 40.44 4.18
680 688 0.317479 ACTTGTTAGCTCGGCTCGTT 59.683 50.000 1.46 0.00 40.44 3.85
681 689 1.542915 ACTTGTTAGCTCGGCTCGTTA 59.457 47.619 1.46 0.00 40.44 3.18
682 690 2.029649 ACTTGTTAGCTCGGCTCGTTAA 60.030 45.455 1.46 0.00 40.44 2.01
683 691 2.728690 TGTTAGCTCGGCTCGTTAAA 57.271 45.000 1.46 0.00 40.44 1.52
684 692 2.331194 TGTTAGCTCGGCTCGTTAAAC 58.669 47.619 1.46 2.47 40.44 2.01
685 693 2.029649 TGTTAGCTCGGCTCGTTAAACT 60.030 45.455 1.46 0.00 40.44 2.66
686 694 2.991866 GTTAGCTCGGCTCGTTAAACTT 59.008 45.455 1.46 0.00 40.44 2.66
687 695 1.429463 AGCTCGGCTCGTTAAACTTG 58.571 50.000 0.00 0.00 30.62 3.16
688 696 1.145803 GCTCGGCTCGTTAAACTTGT 58.854 50.000 0.00 0.00 0.00 3.16
689 697 1.529865 GCTCGGCTCGTTAAACTTGTT 59.470 47.619 0.00 0.00 0.00 2.83
690 698 2.032290 GCTCGGCTCGTTAAACTTGTTT 60.032 45.455 4.14 4.14 0.00 2.83
691 699 3.547413 GCTCGGCTCGTTAAACTTGTTTT 60.547 43.478 4.00 0.00 0.00 2.43
692 700 3.942739 TCGGCTCGTTAAACTTGTTTTG 58.057 40.909 4.00 0.00 0.00 2.44
693 701 3.374678 TCGGCTCGTTAAACTTGTTTTGT 59.625 39.130 4.00 0.00 0.00 2.83
694 702 4.099824 CGGCTCGTTAAACTTGTTTTGTT 58.900 39.130 4.00 0.00 0.00 2.83
695 703 5.064452 TCGGCTCGTTAAACTTGTTTTGTTA 59.936 36.000 4.00 0.00 0.00 2.41
696 704 5.738225 CGGCTCGTTAAACTTGTTTTGTTAA 59.262 36.000 4.00 0.00 0.00 2.01
697 705 6.290696 CGGCTCGTTAAACTTGTTTTGTTAAC 60.291 38.462 4.00 0.00 0.00 2.01
698 706 6.290696 GGCTCGTTAAACTTGTTTTGTTAACG 60.291 38.462 18.17 18.17 36.70 3.18
699 707 6.465465 GCTCGTTAAACTTGTTTTGTTAACGA 59.535 34.615 22.10 22.10 38.84 3.85
700 708 7.304453 GCTCGTTAAACTTGTTTTGTTAACGAG 60.304 37.037 31.48 31.48 46.34 4.18
701 709 6.465465 TCGTTAAACTTGTTTTGTTAACGAGC 59.535 34.615 20.79 0.00 37.81 5.03
702 710 6.466730 CGTTAAACTTGTTTTGTTAACGAGCT 59.533 34.615 18.91 0.00 37.03 4.09
703 711 7.304453 CGTTAAACTTGTTTTGTTAACGAGCTC 60.304 37.037 18.91 2.73 37.03 4.09
704 712 5.554822 AACTTGTTTTGTTAACGAGCTCA 57.445 34.783 15.40 0.00 35.54 4.26
705 713 5.156804 ACTTGTTTTGTTAACGAGCTCAG 57.843 39.130 15.40 9.21 35.54 3.35
706 714 4.873827 ACTTGTTTTGTTAACGAGCTCAGA 59.126 37.500 15.40 0.00 35.54 3.27
707 715 5.527582 ACTTGTTTTGTTAACGAGCTCAGAT 59.472 36.000 15.40 4.16 35.54 2.90
708 716 6.038271 ACTTGTTTTGTTAACGAGCTCAGATT 59.962 34.615 15.40 7.29 35.54 2.40
709 717 7.225931 ACTTGTTTTGTTAACGAGCTCAGATTA 59.774 33.333 15.40 6.27 35.54 1.75
710 718 7.485418 TGTTTTGTTAACGAGCTCAGATTAA 57.515 32.000 15.40 11.89 0.00 1.40
711 719 7.921787 TGTTTTGTTAACGAGCTCAGATTAAA 58.078 30.769 15.40 4.89 0.00 1.52
712 720 8.067784 TGTTTTGTTAACGAGCTCAGATTAAAG 58.932 33.333 15.40 0.00 0.00 1.85
713 721 5.779806 TGTTAACGAGCTCAGATTAAAGC 57.220 39.130 15.40 5.44 38.84 3.51
719 727 2.820330 AGCTCAGATTAAAGCTCGAGC 58.180 47.619 30.01 30.01 45.57 5.03
720 728 1.864082 GCTCAGATTAAAGCTCGAGCC 59.136 52.381 32.94 16.86 43.38 4.70
721 729 2.739932 GCTCAGATTAAAGCTCGAGCCA 60.740 50.000 32.94 16.44 43.38 4.75
722 730 3.525537 CTCAGATTAAAGCTCGAGCCAA 58.474 45.455 32.94 23.60 43.38 4.52
723 731 3.525537 TCAGATTAAAGCTCGAGCCAAG 58.474 45.455 32.94 14.50 43.38 3.61
724 732 3.055819 TCAGATTAAAGCTCGAGCCAAGT 60.056 43.478 32.94 17.92 43.38 3.16
725 733 3.308323 CAGATTAAAGCTCGAGCCAAGTC 59.692 47.826 32.94 22.35 43.38 3.01
726 734 1.710013 TTAAAGCTCGAGCCAAGTCG 58.290 50.000 32.94 0.00 43.38 4.18
727 735 0.885879 TAAAGCTCGAGCCAAGTCGA 59.114 50.000 32.94 9.55 46.52 4.20
731 739 4.116328 TCGAGCCAAGTCGAGCCG 62.116 66.667 0.00 0.00 43.91 5.52
732 740 4.116328 CGAGCCAAGTCGAGCCGA 62.116 66.667 0.00 0.00 42.85 5.54
733 741 2.202676 GAGCCAAGTCGAGCCGAG 60.203 66.667 0.00 0.00 36.23 4.63
734 742 2.992114 AGCCAAGTCGAGCCGAGT 60.992 61.111 0.00 0.00 41.56 4.18
735 743 2.507324 GCCAAGTCGAGCCGAGTC 60.507 66.667 5.56 0.00 38.67 3.36
736 744 2.962569 CCAAGTCGAGCCGAGTCA 59.037 61.111 5.56 0.00 38.67 3.41
737 745 1.444553 CCAAGTCGAGCCGAGTCAC 60.445 63.158 5.56 0.00 38.67 3.67
738 746 1.797933 CAAGTCGAGCCGAGTCACG 60.798 63.158 5.56 0.00 38.67 4.35
739 747 1.964891 AAGTCGAGCCGAGTCACGA 60.965 57.895 5.56 0.00 45.77 4.35
740 748 1.913451 AAGTCGAGCCGAGTCACGAG 61.913 60.000 5.56 0.00 45.77 4.18
741 749 3.800863 TCGAGCCGAGTCACGAGC 61.801 66.667 0.00 0.00 45.77 5.03
742 750 3.805307 CGAGCCGAGTCACGAGCT 61.805 66.667 5.61 5.61 45.57 4.09
743 751 2.461945 CGAGCCGAGTCACGAGCTA 61.462 63.158 5.84 0.00 44.01 3.32
744 752 1.062845 GAGCCGAGTCACGAGCTAC 59.937 63.158 5.84 0.00 44.01 3.58
745 753 1.370587 GAGCCGAGTCACGAGCTACT 61.371 60.000 5.84 0.00 44.01 2.57
746 754 1.062845 GCCGAGTCACGAGCTACTC 59.937 63.158 4.54 4.54 45.77 2.59
758 766 2.196497 GCTACTCGTTTAGCTCGCG 58.804 57.895 0.00 0.00 41.24 5.87
759 767 0.247974 GCTACTCGTTTAGCTCGCGA 60.248 55.000 9.26 9.26 41.24 5.87
761 769 4.767633 CTCGTTTAGCTCGCGAGT 57.232 55.556 34.46 23.50 44.69 4.18
762 770 3.017232 CTCGTTTAGCTCGCGAGTT 57.983 52.632 34.46 31.41 44.69 3.01
763 771 1.337821 CTCGTTTAGCTCGCGAGTTT 58.662 50.000 34.46 25.12 44.69 2.66
764 772 1.317904 CTCGTTTAGCTCGCGAGTTTC 59.682 52.381 34.46 19.75 44.69 2.78
765 773 1.068748 TCGTTTAGCTCGCGAGTTTCT 60.069 47.619 34.46 25.19 0.00 2.52
766 774 1.057847 CGTTTAGCTCGCGAGTTTCTG 59.942 52.381 34.46 17.82 0.00 3.02
767 775 2.325761 GTTTAGCTCGCGAGTTTCTGA 58.674 47.619 34.46 18.49 0.00 3.27
768 776 2.264109 TTAGCTCGCGAGTTTCTGAG 57.736 50.000 34.46 10.65 0.00 3.35
769 777 1.166129 TAGCTCGCGAGTTTCTGAGT 58.834 50.000 34.46 13.20 0.00 3.41
770 778 0.315568 AGCTCGCGAGTTTCTGAGTT 59.684 50.000 34.46 4.56 0.00 3.01
771 779 1.540267 AGCTCGCGAGTTTCTGAGTTA 59.460 47.619 34.46 0.00 0.00 2.24
772 780 2.030185 AGCTCGCGAGTTTCTGAGTTAA 60.030 45.455 34.46 0.00 0.00 2.01
773 781 2.729882 GCTCGCGAGTTTCTGAGTTAAA 59.270 45.455 34.46 0.00 0.00 1.52
774 782 3.183775 GCTCGCGAGTTTCTGAGTTAAAA 59.816 43.478 34.46 0.00 0.00 1.52
775 783 4.143094 GCTCGCGAGTTTCTGAGTTAAAAT 60.143 41.667 34.46 0.00 0.00 1.82
776 784 5.614887 GCTCGCGAGTTTCTGAGTTAAAATT 60.615 40.000 34.46 0.00 0.00 1.82
777 785 5.912528 TCGCGAGTTTCTGAGTTAAAATTC 58.087 37.500 3.71 0.00 0.00 2.17
778 786 5.080068 CGCGAGTTTCTGAGTTAAAATTCC 58.920 41.667 0.00 0.00 0.00 3.01
779 787 5.333798 CGCGAGTTTCTGAGTTAAAATTCCA 60.334 40.000 0.00 0.00 0.00 3.53
780 788 6.612306 GCGAGTTTCTGAGTTAAAATTCCAT 58.388 36.000 0.00 0.00 0.00 3.41
781 789 6.743172 GCGAGTTTCTGAGTTAAAATTCCATC 59.257 38.462 0.00 0.00 0.00 3.51
782 790 7.244192 CGAGTTTCTGAGTTAAAATTCCATCC 58.756 38.462 0.00 0.00 0.00 3.51
783 791 7.468141 AGTTTCTGAGTTAAAATTCCATCCC 57.532 36.000 0.00 0.00 0.00 3.85
784 792 7.241628 AGTTTCTGAGTTAAAATTCCATCCCT 58.758 34.615 0.00 0.00 0.00 4.20
785 793 8.390921 AGTTTCTGAGTTAAAATTCCATCCCTA 58.609 33.333 0.00 0.00 0.00 3.53
786 794 8.459635 GTTTCTGAGTTAAAATTCCATCCCTAC 58.540 37.037 0.00 0.00 0.00 3.18
856 865 0.458889 ATGCATGCACGGAACAATGC 60.459 50.000 25.37 0.00 40.12 3.56
862 871 2.431454 TGCACGGAACAATGCATAGAA 58.569 42.857 0.00 0.00 43.76 2.10
1120 3181 1.821332 CGCCCCAAGAGCAAGATCC 60.821 63.158 0.00 0.00 0.00 3.36
1152 4506 2.894387 GGTCGCAGCTCCAGCATC 60.894 66.667 0.48 0.00 45.16 3.91
1172 4526 1.357690 CTAATGCTACGTCGGCGGA 59.642 57.895 16.39 3.19 43.45 5.54
1875 5262 4.657824 CGGCTCCACGACACGGTT 62.658 66.667 0.00 0.00 35.47 4.44
2025 5436 0.320771 CGCAGGTAGGTATCCCATGC 60.321 60.000 0.00 0.00 0.00 4.06
2026 5437 0.764890 GCAGGTAGGTATCCCATGCA 59.235 55.000 0.00 0.00 32.01 3.96
2027 5438 1.352352 GCAGGTAGGTATCCCATGCAT 59.648 52.381 0.00 0.00 32.01 3.96
2028 5439 2.877300 GCAGGTAGGTATCCCATGCATG 60.877 54.545 20.19 20.19 32.01 4.06
2362 7492 1.001020 CCACATGTTGCCCTAGCCA 60.001 57.895 0.00 0.00 38.69 4.75
2394 7524 2.979120 GGTTACCGCGTGCCCAAA 60.979 61.111 4.92 0.00 0.00 3.28
2613 7743 1.014044 GCGTGATGCTCTTTGGACGA 61.014 55.000 0.00 0.00 41.73 4.20
2631 7761 2.165030 ACGACTATTACAGGGGTTCACG 59.835 50.000 0.00 0.00 0.00 4.35
2657 7787 2.078665 AGCCACCAGGGTTGTCAGT 61.079 57.895 0.00 0.00 45.14 3.41
2753 7883 2.608998 CGATGCATCTCTACTTCGCCAT 60.609 50.000 23.73 0.00 0.00 4.40
2764 7894 5.592054 TCTACTTCGCCATTGACATCTAAG 58.408 41.667 0.00 0.00 0.00 2.18
2781 7911 2.393271 AAGAGATCTTTGGTCGGCTG 57.607 50.000 0.00 0.00 30.82 4.85
2785 7915 0.537188 GATCTTTGGTCGGCTGGAGA 59.463 55.000 0.00 0.00 0.00 3.71
2838 7968 5.670792 AACCAGTTCCATCGACAGTATAA 57.329 39.130 0.00 0.00 0.00 0.98
2920 8061 8.871629 ATTTATGTTTGTCTGGTGGTACATTA 57.128 30.769 0.00 0.00 44.52 1.90
2921 8062 8.693120 TTTATGTTTGTCTGGTGGTACATTAA 57.307 30.769 0.00 0.00 44.52 1.40
2923 8064 4.512198 TGTTTGTCTGGTGGTACATTAACG 59.488 41.667 0.00 0.00 44.52 3.18
2924 8065 2.690786 TGTCTGGTGGTACATTAACGC 58.309 47.619 0.00 0.00 44.52 4.84
2938 8079 0.670854 TAACGCCGCTTGTGCATGTA 60.671 50.000 0.00 0.00 39.64 2.29
2943 8084 1.603802 GCCGCTTGTGCATGTATGTAT 59.396 47.619 0.00 0.00 39.64 2.29
2947 8088 3.186409 CGCTTGTGCATGTATGTATACCC 59.814 47.826 0.00 0.00 39.64 3.69
2949 8090 4.821805 GCTTGTGCATGTATGTATACCCTT 59.178 41.667 0.00 0.00 39.41 3.95
2987 8128 3.149196 TCAACTCAAGGAGCACATTTCC 58.851 45.455 0.00 0.00 32.04 3.13
3001 8142 5.413833 AGCACATTTCCTAGTCAAACTGATG 59.586 40.000 0.00 0.00 0.00 3.07
3003 8144 6.094603 GCACATTTCCTAGTCAAACTGATGAT 59.905 38.462 0.00 0.00 0.00 2.45
3008 8149 9.911788 ATTTCCTAGTCAAACTGATGATACATT 57.088 29.630 0.00 0.00 0.00 2.71
3009 8150 8.722480 TTCCTAGTCAAACTGATGATACATTG 57.278 34.615 0.00 0.00 0.00 2.82
3010 8151 7.275183 TCCTAGTCAAACTGATGATACATTGG 58.725 38.462 0.00 0.00 0.00 3.16
3198 8341 7.820648 ACTAGCTTGTTAATCAAAGATGGTTG 58.179 34.615 0.00 0.00 35.48 3.77
3216 8359 4.349636 TGGTTGAGTTTCCTGACCATAGAA 59.650 41.667 0.00 0.00 35.58 2.10
3370 8514 5.931146 CCTCTGACTATGAGATTATGCAACC 59.069 44.000 0.00 0.00 33.68 3.77
3437 8581 9.396022 ACAACATAACTGGGTGATTATAAAGAG 57.604 33.333 0.00 0.00 0.00 2.85
3438 8582 9.396022 CAACATAACTGGGTGATTATAAAGAGT 57.604 33.333 0.00 0.00 0.00 3.24
3456 8600 0.452585 GTCTCTACAGGTGTCTCCGC 59.547 60.000 0.00 0.00 41.99 5.54
3472 8616 1.065600 CGCAGGTGTTTGTTGGGTG 59.934 57.895 0.00 0.00 0.00 4.61
3483 8627 1.595311 TGTTGGGTGGGCATAGATCT 58.405 50.000 0.00 0.00 0.00 2.75
3629 8773 2.338500 GAGTAAAGAGACTTGCCGGTG 58.662 52.381 1.90 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.918630 TCACTAAAGTAGTTATCTAAACGCTTT 57.081 29.630 13.57 13.57 36.76 3.51
5 6 9.733219 GATCACTAAAGTAGTTATCTAAACGCT 57.267 33.333 3.42 0.00 36.79 5.07
6 7 9.733219 AGATCACTAAAGTAGTTATCTAAACGC 57.267 33.333 9.38 0.00 43.99 4.84
16 17 9.978044 AAGAACGTTTAGATCACTAAAGTAGTT 57.022 29.630 0.46 0.00 45.42 2.24
45 46 9.670442 TGGAAAGTAATCCCTCTGTATACTAAT 57.330 33.333 4.17 0.00 38.82 1.73
46 47 9.496710 TTGGAAAGTAATCCCTCTGTATACTAA 57.503 33.333 4.17 0.00 38.82 2.24
47 48 9.496710 TTTGGAAAGTAATCCCTCTGTATACTA 57.503 33.333 4.17 0.00 38.82 1.82
48 49 7.989947 TTGGAAAGTAATCCCTCTGTATACT 57.010 36.000 4.17 0.00 38.82 2.12
49 50 9.274206 GATTTGGAAAGTAATCCCTCTGTATAC 57.726 37.037 0.00 0.00 38.82 1.47
50 51 8.437575 GGATTTGGAAAGTAATCCCTCTGTATA 58.562 37.037 0.00 0.00 38.82 1.47
51 52 7.129504 AGGATTTGGAAAGTAATCCCTCTGTAT 59.870 37.037 9.58 0.00 41.54 2.29
52 53 6.447084 AGGATTTGGAAAGTAATCCCTCTGTA 59.553 38.462 9.58 0.00 41.54 2.74
53 54 5.254032 AGGATTTGGAAAGTAATCCCTCTGT 59.746 40.000 9.58 0.00 41.54 3.41
54 55 5.760131 AGGATTTGGAAAGTAATCCCTCTG 58.240 41.667 9.58 0.00 41.54 3.35
55 56 6.408770 AAGGATTTGGAAAGTAATCCCTCT 57.591 37.500 9.58 0.00 41.54 3.69
56 57 8.768501 AATAAGGATTTGGAAAGTAATCCCTC 57.231 34.615 9.58 0.00 41.54 4.30
57 58 9.868160 CTAATAAGGATTTGGAAAGTAATCCCT 57.132 33.333 9.58 1.23 41.54 4.20
58 59 9.642343 ACTAATAAGGATTTGGAAAGTAATCCC 57.358 33.333 9.58 0.00 41.54 3.85
112 113 9.945904 GTAGCTTGCCTTTAAGTATCCTATAAT 57.054 33.333 0.00 0.00 0.00 1.28
196 204 4.961435 AGGCAATTGTTTTGTTTTGGTG 57.039 36.364 7.40 0.00 0.00 4.17
215 223 9.471742 CGTTTAAAAGTCAATTTTCACAAAAGG 57.528 29.630 0.00 0.00 41.40 3.11
273 281 5.162947 ACTTGAATTCCACCCCTATATGCAT 60.163 40.000 3.79 3.79 0.00 3.96
274 282 4.167892 ACTTGAATTCCACCCCTATATGCA 59.832 41.667 2.27 0.00 0.00 3.96
275 283 4.729868 ACTTGAATTCCACCCCTATATGC 58.270 43.478 2.27 0.00 0.00 3.14
276 284 5.940617 TGACTTGAATTCCACCCCTATATG 58.059 41.667 2.27 0.00 0.00 1.78
277 285 6.103205 ACATGACTTGAATTCCACCCCTATAT 59.897 38.462 0.00 0.00 0.00 0.86
278 286 5.431731 ACATGACTTGAATTCCACCCCTATA 59.568 40.000 0.00 0.00 0.00 1.31
279 287 4.230502 ACATGACTTGAATTCCACCCCTAT 59.769 41.667 0.00 0.00 0.00 2.57
280 288 3.591527 ACATGACTTGAATTCCACCCCTA 59.408 43.478 0.00 0.00 0.00 3.53
281 289 2.379907 ACATGACTTGAATTCCACCCCT 59.620 45.455 0.00 0.00 0.00 4.79
282 290 2.755103 GACATGACTTGAATTCCACCCC 59.245 50.000 0.00 0.00 0.00 4.95
283 291 2.420022 CGACATGACTTGAATTCCACCC 59.580 50.000 0.00 0.00 0.00 4.61
284 292 3.334691 TCGACATGACTTGAATTCCACC 58.665 45.455 0.00 0.00 0.00 4.61
285 293 3.181516 GCTCGACATGACTTGAATTCCAC 60.182 47.826 0.00 0.00 0.00 4.02
286 294 3.002791 GCTCGACATGACTTGAATTCCA 58.997 45.455 0.00 0.00 0.00 3.53
287 295 2.352960 GGCTCGACATGACTTGAATTCC 59.647 50.000 0.00 0.00 0.00 3.01
288 296 3.002791 TGGCTCGACATGACTTGAATTC 58.997 45.455 0.00 0.00 0.00 2.17
289 297 3.005554 CTGGCTCGACATGACTTGAATT 58.994 45.455 0.00 0.00 0.00 2.17
290 298 2.625737 CTGGCTCGACATGACTTGAAT 58.374 47.619 0.00 0.00 0.00 2.57
291 299 1.941209 GCTGGCTCGACATGACTTGAA 60.941 52.381 0.00 0.00 0.00 2.69
292 300 0.390340 GCTGGCTCGACATGACTTGA 60.390 55.000 0.00 0.00 0.00 3.02
293 301 0.390866 AGCTGGCTCGACATGACTTG 60.391 55.000 0.00 0.00 0.00 3.16
294 302 0.108424 GAGCTGGCTCGACATGACTT 60.108 55.000 6.84 0.00 33.06 3.01
295 303 1.515020 GAGCTGGCTCGACATGACT 59.485 57.895 6.84 0.00 33.06 3.41
296 304 4.100981 GAGCTGGCTCGACATGAC 57.899 61.111 6.84 0.00 33.06 3.06
309 317 3.068691 TAACGAGCCAGCCGAGCT 61.069 61.111 7.38 0.00 45.23 4.09
310 318 2.583593 CTAACGAGCCAGCCGAGC 60.584 66.667 7.38 0.00 0.00 5.03
311 319 1.064946 CTCTAACGAGCCAGCCGAG 59.935 63.158 7.38 0.00 0.00 4.63
312 320 3.197614 CTCTAACGAGCCAGCCGA 58.802 61.111 7.38 0.00 0.00 5.54
320 328 7.353497 TCATTATCTTAACGAGCTCTAACGAG 58.647 38.462 12.85 3.62 40.35 4.18
321 329 7.012138 ACTCATTATCTTAACGAGCTCTAACGA 59.988 37.037 12.85 2.27 0.00 3.85
322 330 7.133513 ACTCATTATCTTAACGAGCTCTAACG 58.866 38.462 12.85 0.93 0.00 3.18
323 331 8.859517 AACTCATTATCTTAACGAGCTCTAAC 57.140 34.615 12.85 0.00 0.00 2.34
325 333 8.291032 GCTAACTCATTATCTTAACGAGCTCTA 58.709 37.037 12.85 0.00 0.00 2.43
326 334 7.013846 AGCTAACTCATTATCTTAACGAGCTCT 59.986 37.037 12.85 0.00 29.72 4.09
327 335 7.142680 AGCTAACTCATTATCTTAACGAGCTC 58.857 38.462 2.73 2.73 29.72 4.09
328 336 7.045126 AGCTAACTCATTATCTTAACGAGCT 57.955 36.000 0.00 0.00 0.00 4.09
329 337 7.306866 CCAAGCTAACTCATTATCTTAACGAGC 60.307 40.741 0.00 0.00 28.07 5.03
330 338 7.306866 GCCAAGCTAACTCATTATCTTAACGAG 60.307 40.741 0.00 0.00 28.07 4.18
331 339 6.479001 GCCAAGCTAACTCATTATCTTAACGA 59.521 38.462 0.00 0.00 28.07 3.85
332 340 6.480320 AGCCAAGCTAACTCATTATCTTAACG 59.520 38.462 0.00 0.00 36.99 3.18
333 341 7.306866 CGAGCCAAGCTAACTCATTATCTTAAC 60.307 40.741 10.21 0.00 39.88 2.01
334 342 6.701841 CGAGCCAAGCTAACTCATTATCTTAA 59.298 38.462 10.21 0.00 39.88 1.85
335 343 6.040504 TCGAGCCAAGCTAACTCATTATCTTA 59.959 38.462 10.21 0.00 39.88 2.10
336 344 5.053145 CGAGCCAAGCTAACTCATTATCTT 58.947 41.667 10.21 0.00 39.88 2.40
337 345 4.342378 TCGAGCCAAGCTAACTCATTATCT 59.658 41.667 10.21 0.00 39.88 1.98
338 346 4.446051 GTCGAGCCAAGCTAACTCATTATC 59.554 45.833 10.21 0.00 39.88 1.75
339 347 4.100189 AGTCGAGCCAAGCTAACTCATTAT 59.900 41.667 10.21 0.00 39.88 1.28
340 348 3.447586 AGTCGAGCCAAGCTAACTCATTA 59.552 43.478 10.21 0.00 39.88 1.90
341 349 2.234908 AGTCGAGCCAAGCTAACTCATT 59.765 45.455 10.21 0.00 39.88 2.57
342 350 1.827969 AGTCGAGCCAAGCTAACTCAT 59.172 47.619 10.21 0.00 39.88 2.90
343 351 1.202582 GAGTCGAGCCAAGCTAACTCA 59.797 52.381 19.18 0.00 44.19 3.41
344 352 1.795889 CGAGTCGAGCCAAGCTAACTC 60.796 57.143 6.73 16.17 42.77 3.01
345 353 0.171455 CGAGTCGAGCCAAGCTAACT 59.829 55.000 6.73 4.32 39.88 2.24
346 354 0.109226 ACGAGTCGAGCCAAGCTAAC 60.109 55.000 21.50 0.00 39.88 2.34
347 355 0.601558 AACGAGTCGAGCCAAGCTAA 59.398 50.000 21.50 0.00 39.88 3.09
348 356 1.456296 TAACGAGTCGAGCCAAGCTA 58.544 50.000 21.50 0.00 39.88 3.32
349 357 0.601558 TTAACGAGTCGAGCCAAGCT 59.398 50.000 21.50 0.00 43.88 3.74
350 358 0.714439 GTTAACGAGTCGAGCCAAGC 59.286 55.000 21.50 0.00 0.00 4.01
351 359 2.060326 TGTTAACGAGTCGAGCCAAG 57.940 50.000 21.50 0.00 0.00 3.61
352 360 2.736144 ATGTTAACGAGTCGAGCCAA 57.264 45.000 21.50 4.25 0.00 4.52
353 361 3.504863 GTTATGTTAACGAGTCGAGCCA 58.495 45.455 21.50 10.19 0.00 4.75
354 362 2.529090 CGTTATGTTAACGAGTCGAGCC 59.471 50.000 21.50 4.50 45.64 4.70
355 363 3.419915 TCGTTATGTTAACGAGTCGAGC 58.580 45.455 21.50 6.50 46.21 5.03
367 375 8.592998 CGAGTTTTAATCTAAGCTCGTTATGTT 58.407 33.333 12.43 0.00 38.71 2.71
368 376 7.222224 CCGAGTTTTAATCTAAGCTCGTTATGT 59.778 37.037 17.11 0.00 40.25 2.29
369 377 7.222224 ACCGAGTTTTAATCTAAGCTCGTTATG 59.778 37.037 17.11 7.88 40.25 1.90
370 378 7.263496 ACCGAGTTTTAATCTAAGCTCGTTAT 58.737 34.615 17.11 4.54 40.25 1.89
371 379 6.624423 ACCGAGTTTTAATCTAAGCTCGTTA 58.376 36.000 17.11 0.00 40.25 3.18
372 380 5.476614 ACCGAGTTTTAATCTAAGCTCGTT 58.523 37.500 17.11 4.82 40.25 3.85
373 381 5.069501 ACCGAGTTTTAATCTAAGCTCGT 57.930 39.130 17.11 6.79 40.25 4.18
374 382 5.275788 CGAACCGAGTTTTAATCTAAGCTCG 60.276 44.000 13.34 13.34 40.87 5.03
375 383 5.803967 TCGAACCGAGTTTTAATCTAAGCTC 59.196 40.000 0.00 0.00 0.00 4.09
376 384 5.575995 GTCGAACCGAGTTTTAATCTAAGCT 59.424 40.000 0.00 0.00 36.23 3.74
377 385 5.575995 AGTCGAACCGAGTTTTAATCTAAGC 59.424 40.000 0.00 0.00 35.97 3.09
378 386 6.805271 TGAGTCGAACCGAGTTTTAATCTAAG 59.195 38.462 0.00 0.00 39.77 2.18
379 387 6.680810 TGAGTCGAACCGAGTTTTAATCTAA 58.319 36.000 0.00 0.00 39.77 2.10
380 388 6.258230 TGAGTCGAACCGAGTTTTAATCTA 57.742 37.500 0.00 0.00 39.77 1.98
381 389 5.130292 TGAGTCGAACCGAGTTTTAATCT 57.870 39.130 0.00 0.00 39.77 2.40
382 390 5.347907 ACATGAGTCGAACCGAGTTTTAATC 59.652 40.000 0.00 0.00 39.77 1.75
383 391 5.235516 ACATGAGTCGAACCGAGTTTTAAT 58.764 37.500 0.00 0.00 39.77 1.40
384 392 4.624015 ACATGAGTCGAACCGAGTTTTAA 58.376 39.130 0.00 0.00 39.77 1.52
385 393 4.247267 ACATGAGTCGAACCGAGTTTTA 57.753 40.909 0.00 0.00 39.77 1.52
386 394 3.107642 ACATGAGTCGAACCGAGTTTT 57.892 42.857 0.00 0.00 39.77 2.43
387 395 2.814280 ACATGAGTCGAACCGAGTTT 57.186 45.000 0.00 0.00 39.77 2.66
388 396 3.255149 AGTTACATGAGTCGAACCGAGTT 59.745 43.478 0.00 0.00 39.77 3.01
389 397 2.818432 AGTTACATGAGTCGAACCGAGT 59.182 45.455 0.00 0.00 42.52 4.18
390 398 3.427243 GAGTTACATGAGTCGAACCGAG 58.573 50.000 0.00 0.00 36.23 4.63
391 399 2.159612 CGAGTTACATGAGTCGAACCGA 60.160 50.000 0.00 0.00 43.39 4.69
392 400 2.174764 CGAGTTACATGAGTCGAACCG 58.825 52.381 0.00 0.00 43.39 4.44
393 401 1.918609 GCGAGTTACATGAGTCGAACC 59.081 52.381 14.04 0.00 43.39 3.62
394 402 1.578023 CGCGAGTTACATGAGTCGAAC 59.422 52.381 14.04 4.15 43.39 3.95
395 403 1.465777 TCGCGAGTTACATGAGTCGAA 59.534 47.619 3.71 0.93 43.39 3.71
396 404 1.062148 CTCGCGAGTTACATGAGTCGA 59.938 52.381 27.79 5.63 43.39 4.20
397 405 1.457738 CTCGCGAGTTACATGAGTCG 58.542 55.000 27.79 3.24 43.52 4.18
398 406 1.192793 GCTCGCGAGTTACATGAGTC 58.807 55.000 34.46 12.23 0.00 3.36
399 407 0.811915 AGCTCGCGAGTTACATGAGT 59.188 50.000 34.46 7.91 0.00 3.41
400 408 2.645163 CTAGCTCGCGAGTTACATGAG 58.355 52.381 34.46 19.75 0.00 2.90
401 409 1.268589 GCTAGCTCGCGAGTTACATGA 60.269 52.381 34.46 14.48 0.00 3.07
402 410 1.124462 GCTAGCTCGCGAGTTACATG 58.876 55.000 34.46 22.09 0.00 3.21
403 411 1.002251 GAGCTAGCTCGCGAGTTACAT 60.002 52.381 34.46 21.73 33.06 2.29
404 412 0.377554 GAGCTAGCTCGCGAGTTACA 59.622 55.000 34.46 15.95 33.06 2.41
405 413 3.151848 GAGCTAGCTCGCGAGTTAC 57.848 57.895 34.46 24.83 33.06 2.50
414 422 3.134021 ACGAGTTAAACGAGCTAGCTC 57.866 47.619 31.12 31.12 39.55 4.09
415 423 3.572604 AACGAGTTAAACGAGCTAGCT 57.427 42.857 19.45 19.45 34.70 3.32
416 424 5.752098 TTTAACGAGTTAAACGAGCTAGC 57.248 39.130 14.88 6.62 39.34 3.42
426 434 9.677567 ACGTCTATAACAAGTTTAACGAGTTAA 57.322 29.630 15.22 4.48 33.63 2.01
427 435 9.117145 CACGTCTATAACAAGTTTAACGAGTTA 57.883 33.333 14.18 14.18 33.44 2.24
428 436 7.862372 TCACGTCTATAACAAGTTTAACGAGTT 59.138 33.333 11.46 11.46 33.44 3.01
429 437 7.362662 TCACGTCTATAACAAGTTTAACGAGT 58.637 34.615 12.55 0.00 33.44 4.18
430 438 7.786305 TCACGTCTATAACAAGTTTAACGAG 57.214 36.000 12.55 7.56 33.44 4.18
431 439 8.746922 ATTCACGTCTATAACAAGTTTAACGA 57.253 30.769 12.55 0.00 33.44 3.85
506 514 9.944663 GTGTGAAGAAAAATTATGTGTCTACAA 57.055 29.630 0.00 0.00 40.84 2.41
507 515 9.114952 TGTGTGAAGAAAAATTATGTGTCTACA 57.885 29.630 0.00 0.00 41.89 2.74
510 518 8.849168 TGATGTGTGAAGAAAAATTATGTGTCT 58.151 29.630 0.00 0.00 0.00 3.41
511 519 8.905702 GTGATGTGTGAAGAAAAATTATGTGTC 58.094 33.333 0.00 0.00 0.00 3.67
512 520 8.412456 TGTGATGTGTGAAGAAAAATTATGTGT 58.588 29.630 0.00 0.00 0.00 3.72
513 521 8.800231 TGTGATGTGTGAAGAAAAATTATGTG 57.200 30.769 0.00 0.00 0.00 3.21
514 522 7.596248 GCTGTGATGTGTGAAGAAAAATTATGT 59.404 33.333 0.00 0.00 0.00 2.29
515 523 7.595875 TGCTGTGATGTGTGAAGAAAAATTATG 59.404 33.333 0.00 0.00 0.00 1.90
516 524 7.660112 TGCTGTGATGTGTGAAGAAAAATTAT 58.340 30.769 0.00 0.00 0.00 1.28
517 525 7.036996 TGCTGTGATGTGTGAAGAAAAATTA 57.963 32.000 0.00 0.00 0.00 1.40
518 526 5.904941 TGCTGTGATGTGTGAAGAAAAATT 58.095 33.333 0.00 0.00 0.00 1.82
519 527 5.518848 TGCTGTGATGTGTGAAGAAAAAT 57.481 34.783 0.00 0.00 0.00 1.82
520 528 4.979943 TGCTGTGATGTGTGAAGAAAAA 57.020 36.364 0.00 0.00 0.00 1.94
521 529 4.979943 TTGCTGTGATGTGTGAAGAAAA 57.020 36.364 0.00 0.00 0.00 2.29
522 530 4.579753 TGATTGCTGTGATGTGTGAAGAAA 59.420 37.500 0.00 0.00 0.00 2.52
523 531 4.136051 TGATTGCTGTGATGTGTGAAGAA 58.864 39.130 0.00 0.00 0.00 2.52
524 532 3.742385 TGATTGCTGTGATGTGTGAAGA 58.258 40.909 0.00 0.00 0.00 2.87
525 533 4.224433 GTTGATTGCTGTGATGTGTGAAG 58.776 43.478 0.00 0.00 0.00 3.02
526 534 3.631227 TGTTGATTGCTGTGATGTGTGAA 59.369 39.130 0.00 0.00 0.00 3.18
527 535 3.212685 TGTTGATTGCTGTGATGTGTGA 58.787 40.909 0.00 0.00 0.00 3.58
528 536 3.629438 TGTTGATTGCTGTGATGTGTG 57.371 42.857 0.00 0.00 0.00 3.82
529 537 4.859304 ATTGTTGATTGCTGTGATGTGT 57.141 36.364 0.00 0.00 0.00 3.72
530 538 6.641723 TGTAAATTGTTGATTGCTGTGATGTG 59.358 34.615 0.00 0.00 0.00 3.21
531 539 6.642131 GTGTAAATTGTTGATTGCTGTGATGT 59.358 34.615 0.00 0.00 0.00 3.06
532 540 6.089820 GGTGTAAATTGTTGATTGCTGTGATG 59.910 38.462 0.00 0.00 0.00 3.07
533 541 6.158598 GGTGTAAATTGTTGATTGCTGTGAT 58.841 36.000 0.00 0.00 0.00 3.06
534 542 5.068329 TGGTGTAAATTGTTGATTGCTGTGA 59.932 36.000 0.00 0.00 0.00 3.58
535 543 5.288015 TGGTGTAAATTGTTGATTGCTGTG 58.712 37.500 0.00 0.00 0.00 3.66
536 544 5.528043 TGGTGTAAATTGTTGATTGCTGT 57.472 34.783 0.00 0.00 0.00 4.40
537 545 6.073657 CCTTTGGTGTAAATTGTTGATTGCTG 60.074 38.462 0.00 0.00 0.00 4.41
538 546 5.990996 CCTTTGGTGTAAATTGTTGATTGCT 59.009 36.000 0.00 0.00 0.00 3.91
539 547 5.988561 TCCTTTGGTGTAAATTGTTGATTGC 59.011 36.000 0.00 0.00 0.00 3.56
540 548 8.430801 TTTCCTTTGGTGTAAATTGTTGATTG 57.569 30.769 0.00 0.00 0.00 2.67
541 549 8.888716 GTTTTCCTTTGGTGTAAATTGTTGATT 58.111 29.630 0.00 0.00 0.00 2.57
542 550 8.264347 AGTTTTCCTTTGGTGTAAATTGTTGAT 58.736 29.630 0.00 0.00 0.00 2.57
543 551 7.616313 AGTTTTCCTTTGGTGTAAATTGTTGA 58.384 30.769 0.00 0.00 0.00 3.18
544 552 7.841915 AGTTTTCCTTTGGTGTAAATTGTTG 57.158 32.000 0.00 0.00 0.00 3.33
545 553 7.335673 CCAAGTTTTCCTTTGGTGTAAATTGTT 59.664 33.333 0.00 0.00 0.00 2.83
546 554 6.821160 CCAAGTTTTCCTTTGGTGTAAATTGT 59.179 34.615 0.00 0.00 0.00 2.71
547 555 6.821160 ACCAAGTTTTCCTTTGGTGTAAATTG 59.179 34.615 8.01 0.00 34.96 2.32
548 556 6.953101 ACCAAGTTTTCCTTTGGTGTAAATT 58.047 32.000 8.01 0.00 34.96 1.82
549 557 6.553953 ACCAAGTTTTCCTTTGGTGTAAAT 57.446 33.333 8.01 0.00 34.96 1.40
550 558 6.436532 TGTACCAAGTTTTCCTTTGGTGTAAA 59.563 34.615 16.78 0.00 36.15 2.01
551 559 5.950549 TGTACCAAGTTTTCCTTTGGTGTAA 59.049 36.000 16.78 2.39 36.15 2.41
552 560 5.507637 TGTACCAAGTTTTCCTTTGGTGTA 58.492 37.500 16.78 5.14 36.15 2.90
553 561 4.345854 TGTACCAAGTTTTCCTTTGGTGT 58.654 39.130 16.78 0.00 36.15 4.16
554 562 4.993029 TGTACCAAGTTTTCCTTTGGTG 57.007 40.909 16.78 0.00 36.15 4.17
555 563 5.069914 GGATTGTACCAAGTTTTCCTTTGGT 59.930 40.000 12.86 12.86 37.88 3.67
556 564 5.069781 TGGATTGTACCAAGTTTTCCTTTGG 59.930 40.000 1.90 1.90 36.96 3.28
557 565 6.155475 TGGATTGTACCAAGTTTTCCTTTG 57.845 37.500 0.00 0.00 36.96 2.77
558 566 6.800072 TTGGATTGTACCAAGTTTTCCTTT 57.200 33.333 0.00 0.00 43.79 3.11
568 576 6.878317 TGTTGTCATTTTTGGATTGTACCAA 58.122 32.000 0.00 0.00 46.44 3.67
569 577 6.471233 TGTTGTCATTTTTGGATTGTACCA 57.529 33.333 0.00 0.00 38.24 3.25
570 578 7.872483 AGATTGTTGTCATTTTTGGATTGTACC 59.128 33.333 0.00 0.00 0.00 3.34
571 579 8.816640 AGATTGTTGTCATTTTTGGATTGTAC 57.183 30.769 0.00 0.00 0.00 2.90
572 580 9.906660 GTAGATTGTTGTCATTTTTGGATTGTA 57.093 29.630 0.00 0.00 0.00 2.41
573 581 8.420222 TGTAGATTGTTGTCATTTTTGGATTGT 58.580 29.630 0.00 0.00 0.00 2.71
574 582 8.702438 GTGTAGATTGTTGTCATTTTTGGATTG 58.298 33.333 0.00 0.00 0.00 2.67
575 583 8.420222 TGTGTAGATTGTTGTCATTTTTGGATT 58.580 29.630 0.00 0.00 0.00 3.01
576 584 7.950512 TGTGTAGATTGTTGTCATTTTTGGAT 58.049 30.769 0.00 0.00 0.00 3.41
577 585 7.340122 TGTGTAGATTGTTGTCATTTTTGGA 57.660 32.000 0.00 0.00 0.00 3.53
578 586 8.489559 CATTGTGTAGATTGTTGTCATTTTTGG 58.510 33.333 0.00 0.00 0.00 3.28
579 587 9.033481 ACATTGTGTAGATTGTTGTCATTTTTG 57.967 29.630 0.00 0.00 0.00 2.44
580 588 9.598517 AACATTGTGTAGATTGTTGTCATTTTT 57.401 25.926 0.00 0.00 31.45 1.94
581 589 9.033481 CAACATTGTGTAGATTGTTGTCATTTT 57.967 29.630 6.50 0.00 42.37 1.82
582 590 8.412456 TCAACATTGTGTAGATTGTTGTCATTT 58.588 29.630 12.68 0.00 45.65 2.32
583 591 7.939782 TCAACATTGTGTAGATTGTTGTCATT 58.060 30.769 12.68 0.00 45.65 2.57
584 592 7.509141 TCAACATTGTGTAGATTGTTGTCAT 57.491 32.000 12.68 0.00 45.65 3.06
585 593 6.934048 TCAACATTGTGTAGATTGTTGTCA 57.066 33.333 12.68 0.00 45.65 3.58
586 594 8.721478 AGTATCAACATTGTGTAGATTGTTGTC 58.279 33.333 12.68 6.76 45.65 3.18
587 595 8.621532 AGTATCAACATTGTGTAGATTGTTGT 57.378 30.769 12.68 5.29 45.65 3.32
597 605 9.102757 GACATGAGATAAGTATCAACATTGTGT 57.897 33.333 0.00 3.31 35.17 3.72
598 606 9.101655 TGACATGAGATAAGTATCAACATTGTG 57.898 33.333 0.00 0.81 35.17 3.33
599 607 9.102757 GTGACATGAGATAAGTATCAACATTGT 57.897 33.333 0.00 6.99 35.17 2.71
600 608 9.322773 AGTGACATGAGATAAGTATCAACATTG 57.677 33.333 0.00 0.00 35.17 2.82
601 609 9.896645 AAGTGACATGAGATAAGTATCAACATT 57.103 29.630 0.00 0.00 35.17 2.71
602 610 9.896645 AAAGTGACATGAGATAAGTATCAACAT 57.103 29.630 0.00 3.92 35.17 2.71
603 611 9.725019 AAAAGTGACATGAGATAAGTATCAACA 57.275 29.630 0.00 1.96 35.17 3.33
604 612 9.979270 CAAAAGTGACATGAGATAAGTATCAAC 57.021 33.333 0.00 0.00 35.17 3.18
605 613 9.942850 TCAAAAGTGACATGAGATAAGTATCAA 57.057 29.630 0.00 0.00 35.17 2.57
614 622 8.025445 GCTTGTTAATCAAAAGTGACATGAGAT 58.975 33.333 0.00 0.00 36.31 2.75
615 623 7.229306 AGCTTGTTAATCAAAAGTGACATGAGA 59.771 33.333 0.00 0.00 36.31 3.27
616 624 7.365741 AGCTTGTTAATCAAAAGTGACATGAG 58.634 34.615 0.00 0.00 36.31 2.90
617 625 7.275888 AGCTTGTTAATCAAAAGTGACATGA 57.724 32.000 0.00 0.00 36.31 3.07
618 626 7.935338 AAGCTTGTTAATCAAAAGTGACATG 57.065 32.000 0.00 0.00 36.31 3.21
619 627 9.463443 GTTAAGCTTGTTAATCAAAAGTGACAT 57.537 29.630 9.86 0.00 36.31 3.06
620 628 7.642194 CGTTAAGCTTGTTAATCAAAAGTGACA 59.358 33.333 9.86 0.00 36.31 3.58
621 629 7.853929 TCGTTAAGCTTGTTAATCAAAAGTGAC 59.146 33.333 9.86 0.00 36.31 3.67
622 630 7.921787 TCGTTAAGCTTGTTAATCAAAAGTGA 58.078 30.769 9.86 0.00 38.41 3.41
623 631 7.855904 ACTCGTTAAGCTTGTTAATCAAAAGTG 59.144 33.333 9.86 0.00 35.48 3.16
624 632 7.927048 ACTCGTTAAGCTTGTTAATCAAAAGT 58.073 30.769 9.86 0.00 35.48 2.66
625 633 8.067784 TGACTCGTTAAGCTTGTTAATCAAAAG 58.932 33.333 9.86 0.00 35.48 2.27
626 634 7.921787 TGACTCGTTAAGCTTGTTAATCAAAA 58.078 30.769 9.86 0.00 35.48 2.44
627 635 7.485418 TGACTCGTTAAGCTTGTTAATCAAA 57.515 32.000 9.86 0.00 35.48 2.69
628 636 7.485418 TTGACTCGTTAAGCTTGTTAATCAA 57.515 32.000 9.86 9.16 34.61 2.57
629 637 7.485418 TTTGACTCGTTAAGCTTGTTAATCA 57.515 32.000 9.86 3.25 0.00 2.57
630 638 7.058016 CGTTTTGACTCGTTAAGCTTGTTAATC 59.942 37.037 9.86 0.50 0.00 1.75
631 639 6.849305 CGTTTTGACTCGTTAAGCTTGTTAAT 59.151 34.615 9.86 0.00 0.00 1.40
632 640 6.035866 TCGTTTTGACTCGTTAAGCTTGTTAA 59.964 34.615 9.86 0.00 0.00 2.01
633 641 5.519566 TCGTTTTGACTCGTTAAGCTTGTTA 59.480 36.000 9.86 0.00 0.00 2.41
634 642 4.330620 TCGTTTTGACTCGTTAAGCTTGTT 59.669 37.500 9.86 0.00 0.00 2.83
635 643 3.866910 TCGTTTTGACTCGTTAAGCTTGT 59.133 39.130 9.86 0.00 0.00 3.16
636 644 4.025979 ACTCGTTTTGACTCGTTAAGCTTG 60.026 41.667 9.86 0.00 0.00 4.01
637 645 4.117685 ACTCGTTTTGACTCGTTAAGCTT 58.882 39.130 3.48 3.48 0.00 3.74
638 646 3.714391 ACTCGTTTTGACTCGTTAAGCT 58.286 40.909 0.00 0.00 0.00 3.74
639 647 5.174579 AGTTACTCGTTTTGACTCGTTAAGC 59.825 40.000 0.00 0.00 0.00 3.09
640 648 6.744550 AGTTACTCGTTTTGACTCGTTAAG 57.255 37.500 0.00 0.00 0.00 1.85
641 649 6.531240 ACAAGTTACTCGTTTTGACTCGTTAA 59.469 34.615 0.00 0.00 0.00 2.01
642 650 6.035843 ACAAGTTACTCGTTTTGACTCGTTA 58.964 36.000 0.00 0.00 0.00 3.18
643 651 4.866486 ACAAGTTACTCGTTTTGACTCGTT 59.134 37.500 0.00 0.00 0.00 3.85
644 652 4.427312 ACAAGTTACTCGTTTTGACTCGT 58.573 39.130 0.00 0.00 0.00 4.18
645 653 5.385396 AACAAGTTACTCGTTTTGACTCG 57.615 39.130 0.00 0.00 0.00 4.18
646 654 6.200475 AGCTAACAAGTTACTCGTTTTGACTC 59.800 38.462 0.00 0.00 0.00 3.36
647 655 6.047231 AGCTAACAAGTTACTCGTTTTGACT 58.953 36.000 0.00 0.00 0.00 3.41
648 656 6.283161 AGCTAACAAGTTACTCGTTTTGAC 57.717 37.500 0.00 0.00 0.00 3.18
649 657 5.174398 CGAGCTAACAAGTTACTCGTTTTGA 59.826 40.000 22.30 0.00 39.25 2.69
650 658 5.363517 CGAGCTAACAAGTTACTCGTTTTG 58.636 41.667 22.30 1.61 39.25 2.44
651 659 4.446719 CCGAGCTAACAAGTTACTCGTTTT 59.553 41.667 25.12 0.00 40.60 2.43
652 660 3.985925 CCGAGCTAACAAGTTACTCGTTT 59.014 43.478 25.12 0.00 40.60 3.60
653 661 3.572584 CCGAGCTAACAAGTTACTCGTT 58.427 45.455 25.12 0.00 40.60 3.85
654 662 2.670509 GCCGAGCTAACAAGTTACTCGT 60.671 50.000 25.12 0.00 40.60 4.18
655 663 1.918609 GCCGAGCTAACAAGTTACTCG 59.081 52.381 22.95 22.95 41.14 4.18
656 664 3.180613 GAGCCGAGCTAACAAGTTACTC 58.819 50.000 0.00 10.11 39.88 2.59
657 665 2.415625 CGAGCCGAGCTAACAAGTTACT 60.416 50.000 0.00 0.00 39.88 2.24
658 666 1.918609 CGAGCCGAGCTAACAAGTTAC 59.081 52.381 0.00 0.00 39.88 2.50
659 667 1.542915 ACGAGCCGAGCTAACAAGTTA 59.457 47.619 1.50 0.00 39.88 2.24
660 668 0.317479 ACGAGCCGAGCTAACAAGTT 59.683 50.000 1.50 0.00 39.88 2.66
661 669 0.317479 AACGAGCCGAGCTAACAAGT 59.683 50.000 1.50 0.00 39.88 3.16
662 670 2.273370 TAACGAGCCGAGCTAACAAG 57.727 50.000 1.50 0.00 39.88 3.16
663 671 2.728690 TTAACGAGCCGAGCTAACAA 57.271 45.000 1.50 0.00 39.88 2.83
664 672 2.029649 AGTTTAACGAGCCGAGCTAACA 60.030 45.455 1.50 0.00 39.88 2.41
665 673 2.603953 AGTTTAACGAGCCGAGCTAAC 58.396 47.619 1.50 0.54 39.88 2.34
666 674 2.991190 CAAGTTTAACGAGCCGAGCTAA 59.009 45.455 1.50 0.00 39.88 3.09
667 675 2.029649 ACAAGTTTAACGAGCCGAGCTA 60.030 45.455 1.50 0.00 39.88 3.32
668 676 1.270147 ACAAGTTTAACGAGCCGAGCT 60.270 47.619 1.50 0.00 43.88 4.09
669 677 1.145803 ACAAGTTTAACGAGCCGAGC 58.854 50.000 1.50 0.00 0.00 5.03
670 678 3.872560 AAACAAGTTTAACGAGCCGAG 57.127 42.857 0.00 0.00 0.00 4.63
671 679 3.374678 ACAAAACAAGTTTAACGAGCCGA 59.625 39.130 0.00 0.00 31.63 5.54
672 680 3.687200 ACAAAACAAGTTTAACGAGCCG 58.313 40.909 0.00 0.00 31.63 5.52
673 681 6.290696 CGTTAACAAAACAAGTTTAACGAGCC 60.291 38.462 18.97 0.01 37.70 4.70
674 682 6.465465 TCGTTAACAAAACAAGTTTAACGAGC 59.535 34.615 20.91 4.58 38.47 5.03
675 683 7.935804 TCGTTAACAAAACAAGTTTAACGAG 57.064 32.000 20.91 5.70 38.47 4.18
676 684 6.465465 GCTCGTTAACAAAACAAGTTTAACGA 59.535 34.615 22.25 22.25 39.54 3.85
677 685 6.466730 AGCTCGTTAACAAAACAAGTTTAACG 59.533 34.615 18.20 18.20 37.34 3.18
678 686 7.482428 TGAGCTCGTTAACAAAACAAGTTTAAC 59.518 33.333 9.64 0.00 31.63 2.01
679 687 7.528307 TGAGCTCGTTAACAAAACAAGTTTAA 58.472 30.769 9.64 0.00 31.63 1.52
680 688 7.064847 TCTGAGCTCGTTAACAAAACAAGTTTA 59.935 33.333 9.64 0.00 31.63 2.01
681 689 5.945155 TGAGCTCGTTAACAAAACAAGTTT 58.055 33.333 9.64 0.00 0.00 2.66
682 690 5.353123 TCTGAGCTCGTTAACAAAACAAGTT 59.647 36.000 9.64 0.00 0.00 2.66
683 691 4.873827 TCTGAGCTCGTTAACAAAACAAGT 59.126 37.500 9.64 0.00 0.00 3.16
684 692 5.403897 TCTGAGCTCGTTAACAAAACAAG 57.596 39.130 9.64 0.00 0.00 3.16
685 693 6.371809 AATCTGAGCTCGTTAACAAAACAA 57.628 33.333 9.64 0.00 0.00 2.83
686 694 7.485418 TTAATCTGAGCTCGTTAACAAAACA 57.515 32.000 9.64 0.00 0.00 2.83
687 695 7.059602 GCTTTAATCTGAGCTCGTTAACAAAAC 59.940 37.037 9.64 0.00 36.01 2.43
688 696 7.041372 AGCTTTAATCTGAGCTCGTTAACAAAA 60.041 33.333 9.64 3.21 45.68 2.44
689 697 6.426937 AGCTTTAATCTGAGCTCGTTAACAAA 59.573 34.615 9.64 4.40 45.68 2.83
690 698 5.932303 AGCTTTAATCTGAGCTCGTTAACAA 59.068 36.000 9.64 0.00 45.68 2.83
691 699 5.479306 AGCTTTAATCTGAGCTCGTTAACA 58.521 37.500 9.64 5.43 45.68 2.41
700 708 1.864082 GGCTCGAGCTTTAATCTGAGC 59.136 52.381 34.46 11.47 46.05 4.26
701 709 3.170791 TGGCTCGAGCTTTAATCTGAG 57.829 47.619 34.46 0.00 41.70 3.35
702 710 3.055819 ACTTGGCTCGAGCTTTAATCTGA 60.056 43.478 34.46 10.54 41.70 3.27
703 711 3.265791 ACTTGGCTCGAGCTTTAATCTG 58.734 45.455 34.46 18.17 41.70 2.90
704 712 3.526534 GACTTGGCTCGAGCTTTAATCT 58.473 45.455 34.46 15.53 41.70 2.40
705 713 2.282820 CGACTTGGCTCGAGCTTTAATC 59.717 50.000 34.46 23.12 41.70 1.75
706 714 2.094182 TCGACTTGGCTCGAGCTTTAAT 60.094 45.455 34.46 17.82 37.76 1.40
707 715 1.271379 TCGACTTGGCTCGAGCTTTAA 59.729 47.619 34.46 24.39 37.76 1.52
708 716 0.885879 TCGACTTGGCTCGAGCTTTA 59.114 50.000 34.46 19.49 37.76 1.85
709 717 1.666011 TCGACTTGGCTCGAGCTTT 59.334 52.632 34.46 17.44 37.76 3.51
710 718 3.366629 TCGACTTGGCTCGAGCTT 58.633 55.556 34.46 17.79 37.76 3.74
714 722 4.116328 CGGCTCGACTTGGCTCGA 62.116 66.667 0.00 0.00 40.37 4.04
715 723 4.116328 TCGGCTCGACTTGGCTCG 62.116 66.667 0.00 0.00 34.83 5.03
716 724 2.202676 CTCGGCTCGACTTGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
717 725 2.992114 ACTCGGCTCGACTTGGCT 60.992 61.111 0.00 0.00 0.00 4.75
718 726 2.507324 GACTCGGCTCGACTTGGC 60.507 66.667 0.00 0.00 0.00 4.52
719 727 1.444553 GTGACTCGGCTCGACTTGG 60.445 63.158 0.00 0.00 0.00 3.61
720 728 1.797933 CGTGACTCGGCTCGACTTG 60.798 63.158 0.00 0.00 35.71 3.16
721 729 1.913451 CTCGTGACTCGGCTCGACTT 61.913 60.000 0.00 0.00 40.32 3.01
722 730 2.358369 TCGTGACTCGGCTCGACT 60.358 61.111 0.00 0.00 40.32 4.18
723 731 2.098680 CTCGTGACTCGGCTCGAC 59.901 66.667 0.00 0.00 40.32 4.20
724 732 2.847435 TAGCTCGTGACTCGGCTCGA 62.847 60.000 13.56 0.00 42.01 4.04
725 733 2.461945 TAGCTCGTGACTCGGCTCG 61.462 63.158 13.56 0.00 42.01 5.03
726 734 1.062845 GTAGCTCGTGACTCGGCTC 59.937 63.158 13.56 5.64 42.01 4.70
727 735 1.370587 GAGTAGCTCGTGACTCGGCT 61.371 60.000 14.29 14.29 43.93 5.52
728 736 1.062845 GAGTAGCTCGTGACTCGGC 59.937 63.158 0.00 0.27 40.32 5.54
740 748 0.247974 TCGCGAGCTAAACGAGTAGC 60.248 55.000 3.71 12.33 45.77 3.58
741 749 1.732528 CTCGCGAGCTAAACGAGTAG 58.267 55.000 25.07 0.00 46.19 2.57
742 750 3.891786 CTCGCGAGCTAAACGAGTA 57.108 52.632 25.07 0.00 46.19 2.59
743 751 4.767633 CTCGCGAGCTAAACGAGT 57.232 55.556 25.07 0.00 46.19 4.18
745 753 1.068748 AGAAACTCGCGAGCTAAACGA 60.069 47.619 34.83 5.26 0.00 3.85
746 754 1.057847 CAGAAACTCGCGAGCTAAACG 59.942 52.381 34.83 15.90 0.00 3.60
747 755 2.325761 TCAGAAACTCGCGAGCTAAAC 58.674 47.619 34.83 20.65 0.00 2.01
748 756 2.030185 ACTCAGAAACTCGCGAGCTAAA 60.030 45.455 34.83 15.06 0.00 1.85
749 757 1.540267 ACTCAGAAACTCGCGAGCTAA 59.460 47.619 34.83 10.41 0.00 3.09
750 758 1.166129 ACTCAGAAACTCGCGAGCTA 58.834 50.000 34.83 13.33 0.00 3.32
751 759 0.315568 AACTCAGAAACTCGCGAGCT 59.684 50.000 34.83 22.04 0.00 4.09
752 760 1.978542 TAACTCAGAAACTCGCGAGC 58.021 50.000 34.83 19.34 0.00 5.03
753 761 4.966850 TTTTAACTCAGAAACTCGCGAG 57.033 40.909 33.45 33.45 0.00 5.03
754 762 5.107220 GGAATTTTAACTCAGAAACTCGCGA 60.107 40.000 9.26 9.26 0.00 5.87
755 763 5.080068 GGAATTTTAACTCAGAAACTCGCG 58.920 41.667 0.00 0.00 0.00 5.87
756 764 5.997385 TGGAATTTTAACTCAGAAACTCGC 58.003 37.500 0.00 0.00 0.00 5.03
757 765 7.244192 GGATGGAATTTTAACTCAGAAACTCG 58.756 38.462 0.00 0.00 0.00 4.18
758 766 7.394641 AGGGATGGAATTTTAACTCAGAAACTC 59.605 37.037 0.00 0.00 0.00 3.01
759 767 7.241628 AGGGATGGAATTTTAACTCAGAAACT 58.758 34.615 0.00 0.00 0.00 2.66
760 768 7.468141 AGGGATGGAATTTTAACTCAGAAAC 57.532 36.000 0.00 0.00 0.00 2.78
761 769 8.167392 TGTAGGGATGGAATTTTAACTCAGAAA 58.833 33.333 0.00 0.00 0.00 2.52
762 770 7.695055 TGTAGGGATGGAATTTTAACTCAGAA 58.305 34.615 0.00 0.00 0.00 3.02
763 771 7.265599 TGTAGGGATGGAATTTTAACTCAGA 57.734 36.000 0.00 0.00 0.00 3.27
764 772 7.469181 GCATGTAGGGATGGAATTTTAACTCAG 60.469 40.741 0.00 0.00 0.00 3.35
765 773 6.321181 GCATGTAGGGATGGAATTTTAACTCA 59.679 38.462 0.00 0.00 0.00 3.41
766 774 6.321181 TGCATGTAGGGATGGAATTTTAACTC 59.679 38.462 0.00 0.00 0.00 3.01
767 775 6.194235 TGCATGTAGGGATGGAATTTTAACT 58.806 36.000 0.00 0.00 0.00 2.24
768 776 6.463995 TGCATGTAGGGATGGAATTTTAAC 57.536 37.500 0.00 0.00 0.00 2.01
769 777 8.004215 AGTATGCATGTAGGGATGGAATTTTAA 58.996 33.333 10.16 0.00 0.00 1.52
770 778 7.526041 AGTATGCATGTAGGGATGGAATTTTA 58.474 34.615 10.16 0.00 0.00 1.52
771 779 6.376248 AGTATGCATGTAGGGATGGAATTTT 58.624 36.000 10.16 0.00 0.00 1.82
772 780 5.957132 AGTATGCATGTAGGGATGGAATTT 58.043 37.500 10.16 0.00 0.00 1.82
773 781 5.311649 AGAGTATGCATGTAGGGATGGAATT 59.688 40.000 10.16 0.00 0.00 2.17
774 782 4.848660 AGAGTATGCATGTAGGGATGGAAT 59.151 41.667 10.16 0.00 0.00 3.01
775 783 4.234550 AGAGTATGCATGTAGGGATGGAA 58.765 43.478 10.16 0.00 0.00 3.53
776 784 3.834813 GAGAGTATGCATGTAGGGATGGA 59.165 47.826 10.16 0.00 0.00 3.41
777 785 3.837146 AGAGAGTATGCATGTAGGGATGG 59.163 47.826 10.16 0.00 0.00 3.51
778 786 5.236282 CAAGAGAGTATGCATGTAGGGATG 58.764 45.833 10.16 0.00 0.00 3.51
779 787 4.285517 CCAAGAGAGTATGCATGTAGGGAT 59.714 45.833 10.16 0.00 0.00 3.85
780 788 3.643320 CCAAGAGAGTATGCATGTAGGGA 59.357 47.826 10.16 0.00 0.00 4.20
781 789 3.805108 GCCAAGAGAGTATGCATGTAGGG 60.805 52.174 10.16 1.35 0.00 3.53
782 790 3.397482 GCCAAGAGAGTATGCATGTAGG 58.603 50.000 10.16 1.23 0.00 3.18
783 791 3.055591 CGCCAAGAGAGTATGCATGTAG 58.944 50.000 10.16 0.00 0.00 2.74
784 792 2.430694 ACGCCAAGAGAGTATGCATGTA 59.569 45.455 10.16 0.00 0.00 2.29
785 793 1.208052 ACGCCAAGAGAGTATGCATGT 59.792 47.619 10.16 0.00 0.00 3.21
786 794 1.863454 GACGCCAAGAGAGTATGCATG 59.137 52.381 10.16 0.00 0.00 4.06
859 868 9.350951 GCATTAACCCCTATTTATAGTGTTTCT 57.649 33.333 7.02 0.00 30.81 2.52
860 869 9.127277 TGCATTAACCCCTATTTATAGTGTTTC 57.873 33.333 7.02 0.00 30.81 2.78
1152 4506 1.206745 CCGCCGACGTAGCATTAGTG 61.207 60.000 10.35 0.00 37.70 2.74
1451 4805 1.460689 TTCTTCCACTGGTCCCCGT 60.461 57.895 0.00 0.00 0.00 5.28
1549 4903 1.135721 GACGTAGCGGGTGAGGTTATT 59.864 52.381 0.00 0.00 0.00 1.40
1551 4905 0.322816 AGACGTAGCGGGTGAGGTTA 60.323 55.000 0.00 0.00 0.00 2.85
1803 5184 4.988716 TGGCCGTCGAGGTCCAGT 62.989 66.667 3.34 0.00 46.38 4.00
1825 5212 2.087646 GTTTGCCTCCTTGACCATCTC 58.912 52.381 0.00 0.00 0.00 2.75
1875 5262 2.184830 CCTCCACCGCTCGTCGATA 61.185 63.158 0.00 0.00 41.67 2.92
2025 5436 1.866059 CGCTGACATTGCACGCATG 60.866 57.895 0.00 0.00 0.00 4.06
2026 5437 2.481919 CGCTGACATTGCACGCAT 59.518 55.556 0.00 0.00 0.00 4.73
2172 7302 1.819632 GTTCGCCATCTCCGCCAAT 60.820 57.895 0.00 0.00 0.00 3.16
2334 7464 1.794116 GCAACATGTGGCACATTGAAC 59.206 47.619 29.57 16.01 44.52 3.18
2362 7492 2.030490 TAACCGGCGACTGTGGTGTT 62.030 55.000 9.30 3.58 35.79 3.32
2394 7524 1.276859 TGAGGATGATGTGGCTGCCT 61.277 55.000 21.03 0.00 0.00 4.75
2571 7701 0.321564 TGGTTGTCCCAAGCGATGAG 60.322 55.000 0.00 0.00 41.50 2.90
2613 7743 2.235402 CCACGTGAACCCCTGTAATAGT 59.765 50.000 19.30 0.00 0.00 2.12
2657 7787 4.142204 GCTCTGACTCACTGAGATCAATGA 60.142 45.833 13.25 6.70 43.97 2.57
2747 7877 4.586421 AGATCTCTTAGATGTCAATGGCGA 59.414 41.667 0.00 0.00 34.53 5.54
2753 7883 6.333416 CGACCAAAGATCTCTTAGATGTCAA 58.667 40.000 0.00 0.00 34.53 3.18
2764 7894 0.537188 TCCAGCCGACCAAAGATCTC 59.463 55.000 0.00 0.00 0.00 2.75
2781 7911 8.764524 AACAGAATATTATTACGCTCATCTCC 57.235 34.615 0.00 0.00 0.00 3.71
2785 7915 8.926710 GTGCTAACAGAATATTATTACGCTCAT 58.073 33.333 0.00 0.00 0.00 2.90
2808 7938 3.438781 TCGATGGAACTGGTTATTTGTGC 59.561 43.478 0.00 0.00 0.00 4.57
2899 8029 5.180492 CGTTAATGTACCACCAGACAAACAT 59.820 40.000 0.00 0.00 0.00 2.71
2907 8037 1.003851 CGGCGTTAATGTACCACCAG 58.996 55.000 0.00 0.00 0.00 4.00
2920 8061 1.305219 ATACATGCACAAGCGGCGTT 61.305 50.000 9.37 0.00 46.23 4.84
2921 8062 1.745115 ATACATGCACAAGCGGCGT 60.745 52.632 9.37 0.00 46.23 5.68
2923 8064 1.013596 TACATACATGCACAAGCGGC 58.986 50.000 0.00 0.00 46.23 6.53
2924 8065 3.186409 GGTATACATACATGCACAAGCGG 59.814 47.826 5.01 0.00 38.11 5.52
2987 8128 8.498054 AACCAATGTATCATCAGTTTGACTAG 57.502 34.615 0.00 0.00 0.00 2.57
3001 8142 7.653311 GGCATATTTCCTTCAAACCAATGTATC 59.347 37.037 0.00 0.00 0.00 2.24
3003 8144 6.127196 GGGCATATTTCCTTCAAACCAATGTA 60.127 38.462 0.00 0.00 0.00 2.29
3008 8149 4.059773 AGGGCATATTTCCTTCAAACCA 57.940 40.909 0.00 0.00 0.00 3.67
3009 8150 5.445964 TCTAGGGCATATTTCCTTCAAACC 58.554 41.667 0.00 0.00 34.75 3.27
3010 8151 5.532779 CCTCTAGGGCATATTTCCTTCAAAC 59.467 44.000 0.00 0.00 34.75 2.93
3101 8242 9.321562 CACATGTACTAAGTTTCCGGTTAATAT 57.678 33.333 0.00 0.00 0.00 1.28
3198 8341 5.940470 ACACATTTCTATGGTCAGGAAACTC 59.060 40.000 0.00 0.00 35.45 3.01
3216 8359 5.221880 CCGTTCATCAAATGACAACACATT 58.778 37.500 7.48 0.00 41.43 2.71
3370 8514 1.134491 GTGTTCCTCTGGTATTCGGGG 60.134 57.143 0.00 0.00 0.00 5.73
3437 8581 0.452585 GCGGAGACACCTGTAGAGAC 59.547 60.000 0.00 0.00 36.31 3.36
3438 8582 0.037734 TGCGGAGACACCTGTAGAGA 59.962 55.000 0.00 0.00 36.31 3.10
3456 8600 2.026945 GCCCACCCAACAAACACCTG 62.027 60.000 0.00 0.00 0.00 4.00
3472 8616 7.856415 ACAAATCCTAATCTAGATCTATGCCC 58.144 38.462 5.51 0.00 0.00 5.36
3483 8627 5.892119 ACTCGGAGTGACAAATCCTAATCTA 59.108 40.000 10.41 0.00 33.12 1.98
3629 8773 6.971602 TCATCATACCTAGTTCAATCTCGTC 58.028 40.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.