Multiple sequence alignment - TraesCS5D01G534700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G534700 chr5D 100.000 2510 0 0 1 2510 548954985 548952476 0.000000e+00 4636.0
1 TraesCS5D01G534700 chr5D 94.089 203 11 1 172 374 548952734 548952533 8.720000e-80 307.0
2 TraesCS5D01G534700 chr5D 94.089 203 11 1 2252 2453 548954814 548954612 8.720000e-80 307.0
3 TraesCS5D01G534700 chr5B 91.838 1801 83 18 726 2510 700418123 700416371 0.000000e+00 2453.0
4 TraesCS5D01G534700 chr5B 95.038 262 12 1 371 632 700425195 700424935 6.460000e-111 411.0
5 TraesCS5D01G534700 chr5B 91.827 208 11 2 172 374 700416634 700416428 4.090000e-73 285.0
6 TraesCS5D01G534700 chr5B 97.826 46 1 0 2409 2454 364139418 364139463 2.070000e-11 80.5
7 TraesCS5D01G534700 chr5B 94.737 38 2 0 734 771 700392170 700392133 2.700000e-05 60.2
8 TraesCS5D01G534700 chr4A 95.574 1446 52 4 859 2298 620290472 620289033 0.000000e+00 2305.0
9 TraesCS5D01G534700 chr4A 93.478 276 13 2 361 632 620291006 620290732 3.010000e-109 405.0
10 TraesCS5D01G534700 chr4A 86.283 226 17 7 683 908 620290428 620290639 1.500000e-57 233.0
11 TraesCS5D01G534700 chr4A 95.789 95 4 0 633 727 620290684 620290590 1.200000e-33 154.0
12 TraesCS5D01G534700 chr4A 97.917 48 0 1 172 219 620289079 620289033 5.750000e-12 82.4
13 TraesCS5D01G534700 chr6A 73.730 807 163 32 855 1636 608285442 608284660 1.140000e-68 270.0
14 TraesCS5D01G534700 chr6B 73.408 801 172 25 855 1634 703389566 703388786 6.890000e-66 261.0
15 TraesCS5D01G534700 chr6D 74.006 654 126 26 855 1488 461501495 461500866 2.510000e-55 226.0
16 TraesCS5D01G534700 chr7A 86.842 76 10 0 248 323 731002334 731002409 4.450000e-13 86.1
17 TraesCS5D01G534700 chr7D 96.000 50 2 0 2408 2457 497023240 497023289 5.750000e-12 82.4
18 TraesCS5D01G534700 chr3B 100.000 43 0 0 2415 2457 60259744 60259702 2.070000e-11 80.5
19 TraesCS5D01G534700 chr3B 94.118 51 3 0 2405 2455 114731030 114731080 7.440000e-11 78.7
20 TraesCS5D01G534700 chr1B 95.833 48 2 0 2409 2456 192528923 192528970 7.440000e-11 78.7
21 TraesCS5D01G534700 chr7B 92.593 54 3 1 2403 2455 382279247 382279300 2.680000e-10 76.8
22 TraesCS5D01G534700 chr4D 100.000 41 0 0 2415 2455 362116500 362116460 2.680000e-10 76.8
23 TraesCS5D01G534700 chr1D 93.333 45 3 0 330 374 475604519 475604475 1.610000e-07 67.6
24 TraesCS5D01G534700 chr3D 90.909 44 4 0 330 373 527148334 527148291 2.700000e-05 60.2
25 TraesCS5D01G534700 chr2A 97.059 34 1 0 341 374 497440991 497440958 9.700000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G534700 chr5D 548952476 548954985 2509 True 1750.0 4636 96.059333 1 2510 3 chr5D.!!$R1 2509
1 TraesCS5D01G534700 chr5B 700416371 700418123 1752 True 1369.0 2453 91.832500 172 2510 2 chr5B.!!$R3 2338
2 TraesCS5D01G534700 chr4A 620289033 620291006 1973 True 736.6 2305 95.689500 172 2298 4 chr4A.!!$R1 2126
3 TraesCS5D01G534700 chr6A 608284660 608285442 782 True 270.0 270 73.730000 855 1636 1 chr6A.!!$R1 781
4 TraesCS5D01G534700 chr6B 703388786 703389566 780 True 261.0 261 73.408000 855 1634 1 chr6B.!!$R1 779
5 TraesCS5D01G534700 chr6D 461500866 461501495 629 True 226.0 226 74.006000 855 1488 1 chr6D.!!$R1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.320374 TCCCCAAGTAAGTGTCGCTG 59.680 55.0 0.0 0.0 0.00 5.18 F
850 905 0.320771 CGTGGTGTAAAGAGCCAGCT 60.321 55.0 0.0 0.0 32.31 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1264 0.470766 TGAACGGTTAGGTTGGCAGT 59.529 50.0 0.0 0.0 0.0 4.40 R
1754 1846 1.012086 CGTGCTCATCATGTTCTGGG 58.988 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.224169 CATGTTTATTTCTGAGAAAGCACAAG 57.776 34.615 13.56 8.70 0.00 3.16
26 27 7.566760 TGTTTATTTCTGAGAAAGCACAAGA 57.433 32.000 13.56 0.00 0.00 3.02
27 28 7.642669 TGTTTATTTCTGAGAAAGCACAAGAG 58.357 34.615 13.56 0.00 0.00 2.85
28 29 7.498900 TGTTTATTTCTGAGAAAGCACAAGAGA 59.501 33.333 13.56 0.00 0.00 3.10
29 30 8.345565 GTTTATTTCTGAGAAAGCACAAGAGAA 58.654 33.333 13.56 0.00 0.00 2.87
30 31 5.741388 TTTCTGAGAAAGCACAAGAGAAC 57.259 39.130 3.02 0.00 0.00 3.01
31 32 4.406648 TCTGAGAAAGCACAAGAGAACA 57.593 40.909 0.00 0.00 0.00 3.18
32 33 4.122776 TCTGAGAAAGCACAAGAGAACAC 58.877 43.478 0.00 0.00 0.00 3.32
33 34 3.872696 TGAGAAAGCACAAGAGAACACA 58.127 40.909 0.00 0.00 0.00 3.72
34 35 3.623060 TGAGAAAGCACAAGAGAACACAC 59.377 43.478 0.00 0.00 0.00 3.82
35 36 3.873952 GAGAAAGCACAAGAGAACACACT 59.126 43.478 0.00 0.00 0.00 3.55
36 37 4.265073 AGAAAGCACAAGAGAACACACTT 58.735 39.130 0.00 0.00 0.00 3.16
37 38 4.702131 AGAAAGCACAAGAGAACACACTTT 59.298 37.500 0.00 0.00 0.00 2.66
38 39 4.622701 AAGCACAAGAGAACACACTTTC 57.377 40.909 0.00 0.00 0.00 2.62
39 40 3.878778 AGCACAAGAGAACACACTTTCT 58.121 40.909 0.00 0.00 38.60 2.52
40 41 5.023533 AGCACAAGAGAACACACTTTCTA 57.976 39.130 0.00 0.00 35.90 2.10
41 42 5.428253 AGCACAAGAGAACACACTTTCTAA 58.572 37.500 0.00 0.00 35.90 2.10
42 43 5.294552 AGCACAAGAGAACACACTTTCTAAC 59.705 40.000 0.00 0.00 35.90 2.34
43 44 5.064707 GCACAAGAGAACACACTTTCTAACA 59.935 40.000 0.00 0.00 35.90 2.41
44 45 6.238484 GCACAAGAGAACACACTTTCTAACAT 60.238 38.462 0.00 0.00 35.90 2.71
45 46 7.679638 GCACAAGAGAACACACTTTCTAACATT 60.680 37.037 0.00 0.00 35.90 2.71
46 47 7.641411 CACAAGAGAACACACTTTCTAACATTG 59.359 37.037 0.00 0.00 35.90 2.82
47 48 6.305693 AGAGAACACACTTTCTAACATTGC 57.694 37.500 0.00 0.00 35.90 3.56
48 49 5.239525 AGAGAACACACTTTCTAACATTGCC 59.760 40.000 0.00 0.00 35.90 4.52
49 50 4.887071 AGAACACACTTTCTAACATTGCCA 59.113 37.500 0.00 0.00 33.89 4.92
50 51 5.359576 AGAACACACTTTCTAACATTGCCAA 59.640 36.000 0.00 0.00 33.89 4.52
51 52 5.186996 ACACACTTTCTAACATTGCCAAG 57.813 39.130 0.00 0.00 0.00 3.61
52 53 4.644685 ACACACTTTCTAACATTGCCAAGT 59.355 37.500 0.00 0.00 0.00 3.16
53 54 5.215160 CACACTTTCTAACATTGCCAAGTC 58.785 41.667 0.00 0.00 0.00 3.01
54 55 4.887071 ACACTTTCTAACATTGCCAAGTCA 59.113 37.500 0.00 0.00 0.00 3.41
55 56 5.536161 ACACTTTCTAACATTGCCAAGTCAT 59.464 36.000 0.00 0.00 0.00 3.06
56 57 6.088824 CACTTTCTAACATTGCCAAGTCATC 58.911 40.000 0.00 0.00 0.00 2.92
57 58 5.769662 ACTTTCTAACATTGCCAAGTCATCA 59.230 36.000 0.00 0.00 0.00 3.07
58 59 6.265196 ACTTTCTAACATTGCCAAGTCATCAA 59.735 34.615 0.00 0.00 0.00 2.57
59 60 5.885230 TCTAACATTGCCAAGTCATCAAG 57.115 39.130 0.00 0.00 0.00 3.02
60 61 3.308438 AACATTGCCAAGTCATCAAGC 57.692 42.857 0.00 0.00 0.00 4.01
61 62 1.547372 ACATTGCCAAGTCATCAAGCC 59.453 47.619 0.00 0.00 0.00 4.35
62 63 1.822990 CATTGCCAAGTCATCAAGCCT 59.177 47.619 0.00 0.00 0.00 4.58
63 64 1.538047 TTGCCAAGTCATCAAGCCTC 58.462 50.000 0.00 0.00 0.00 4.70
64 65 0.674581 TGCCAAGTCATCAAGCCTCG 60.675 55.000 0.00 0.00 0.00 4.63
65 66 0.674895 GCCAAGTCATCAAGCCTCGT 60.675 55.000 0.00 0.00 0.00 4.18
66 67 1.405526 GCCAAGTCATCAAGCCTCGTA 60.406 52.381 0.00 0.00 0.00 3.43
67 68 2.743183 GCCAAGTCATCAAGCCTCGTAT 60.743 50.000 0.00 0.00 0.00 3.06
68 69 3.492656 GCCAAGTCATCAAGCCTCGTATA 60.493 47.826 0.00 0.00 0.00 1.47
69 70 4.693283 CCAAGTCATCAAGCCTCGTATAA 58.307 43.478 0.00 0.00 0.00 0.98
70 71 5.116180 CCAAGTCATCAAGCCTCGTATAAA 58.884 41.667 0.00 0.00 0.00 1.40
71 72 5.584649 CCAAGTCATCAAGCCTCGTATAAAA 59.415 40.000 0.00 0.00 0.00 1.52
72 73 6.093495 CCAAGTCATCAAGCCTCGTATAAAAA 59.907 38.462 0.00 0.00 0.00 1.94
96 97 8.561738 AAAACTAATTATGACCTGAATGTCGT 57.438 30.769 0.00 0.00 38.11 4.34
97 98 7.772332 AACTAATTATGACCTGAATGTCGTC 57.228 36.000 0.00 0.00 38.11 4.20
98 99 6.281405 ACTAATTATGACCTGAATGTCGTCC 58.719 40.000 0.00 0.00 38.11 4.79
99 100 5.359194 AATTATGACCTGAATGTCGTCCT 57.641 39.130 0.00 0.00 38.11 3.85
100 101 2.969628 ATGACCTGAATGTCGTCCTC 57.030 50.000 0.00 0.00 38.11 3.71
101 102 1.924731 TGACCTGAATGTCGTCCTCT 58.075 50.000 0.00 0.00 38.11 3.69
102 103 1.546029 TGACCTGAATGTCGTCCTCTG 59.454 52.381 0.00 0.00 38.11 3.35
103 104 1.546476 GACCTGAATGTCGTCCTCTGT 59.454 52.381 0.00 0.00 0.00 3.41
104 105 1.971357 ACCTGAATGTCGTCCTCTGTT 59.029 47.619 0.00 0.00 0.00 3.16
105 106 2.368875 ACCTGAATGTCGTCCTCTGTTT 59.631 45.455 0.00 0.00 0.00 2.83
106 107 3.576982 ACCTGAATGTCGTCCTCTGTTTA 59.423 43.478 0.00 0.00 0.00 2.01
107 108 3.927142 CCTGAATGTCGTCCTCTGTTTAC 59.073 47.826 0.00 0.00 0.00 2.01
108 109 4.322049 CCTGAATGTCGTCCTCTGTTTACT 60.322 45.833 0.00 0.00 0.00 2.24
109 110 5.105877 CCTGAATGTCGTCCTCTGTTTACTA 60.106 44.000 0.00 0.00 0.00 1.82
110 111 6.405953 CCTGAATGTCGTCCTCTGTTTACTAT 60.406 42.308 0.00 0.00 0.00 2.12
111 112 6.330278 TGAATGTCGTCCTCTGTTTACTATG 58.670 40.000 0.00 0.00 0.00 2.23
112 113 4.106029 TGTCGTCCTCTGTTTACTATGC 57.894 45.455 0.00 0.00 0.00 3.14
113 114 3.119245 TGTCGTCCTCTGTTTACTATGCC 60.119 47.826 0.00 0.00 0.00 4.40
114 115 3.093814 TCGTCCTCTGTTTACTATGCCA 58.906 45.455 0.00 0.00 0.00 4.92
115 116 3.704566 TCGTCCTCTGTTTACTATGCCAT 59.295 43.478 0.00 0.00 0.00 4.40
116 117 4.161565 TCGTCCTCTGTTTACTATGCCATT 59.838 41.667 0.00 0.00 0.00 3.16
117 118 4.508124 CGTCCTCTGTTTACTATGCCATTC 59.492 45.833 0.00 0.00 0.00 2.67
118 119 5.675538 GTCCTCTGTTTACTATGCCATTCT 58.324 41.667 0.00 0.00 0.00 2.40
119 120 5.755861 GTCCTCTGTTTACTATGCCATTCTC 59.244 44.000 0.00 0.00 0.00 2.87
120 121 5.663106 TCCTCTGTTTACTATGCCATTCTCT 59.337 40.000 0.00 0.00 0.00 3.10
121 122 6.839134 TCCTCTGTTTACTATGCCATTCTCTA 59.161 38.462 0.00 0.00 0.00 2.43
122 123 7.014711 TCCTCTGTTTACTATGCCATTCTCTAG 59.985 40.741 0.00 0.00 0.00 2.43
123 124 7.055667 TCTGTTTACTATGCCATTCTCTAGG 57.944 40.000 0.00 0.00 0.00 3.02
124 125 6.611642 TCTGTTTACTATGCCATTCTCTAGGT 59.388 38.462 0.00 0.00 0.00 3.08
125 126 6.582636 TGTTTACTATGCCATTCTCTAGGTG 58.417 40.000 0.00 0.00 0.00 4.00
126 127 5.808366 TTACTATGCCATTCTCTAGGTGG 57.192 43.478 0.00 0.00 36.09 4.61
127 128 3.658725 ACTATGCCATTCTCTAGGTGGT 58.341 45.455 0.00 0.00 35.44 4.16
128 129 4.816126 ACTATGCCATTCTCTAGGTGGTA 58.184 43.478 0.00 0.00 35.44 3.25
129 130 4.835615 ACTATGCCATTCTCTAGGTGGTAG 59.164 45.833 0.00 0.00 35.44 3.18
130 131 3.398318 TGCCATTCTCTAGGTGGTAGA 57.602 47.619 0.00 0.00 36.28 2.59
131 132 3.928754 TGCCATTCTCTAGGTGGTAGAT 58.071 45.455 0.00 0.00 37.14 1.98
132 133 5.074746 TGCCATTCTCTAGGTGGTAGATA 57.925 43.478 0.00 0.00 37.14 1.98
133 134 5.080337 TGCCATTCTCTAGGTGGTAGATAG 58.920 45.833 0.00 0.00 37.14 2.08
134 135 5.081032 GCCATTCTCTAGGTGGTAGATAGT 58.919 45.833 0.00 0.00 37.14 2.12
135 136 6.183361 TGCCATTCTCTAGGTGGTAGATAGTA 60.183 42.308 0.00 0.00 37.14 1.82
136 137 6.376018 GCCATTCTCTAGGTGGTAGATAGTAG 59.624 46.154 0.00 0.00 37.14 2.57
137 138 7.691213 CCATTCTCTAGGTGGTAGATAGTAGA 58.309 42.308 0.00 0.00 37.14 2.59
138 139 8.164733 CCATTCTCTAGGTGGTAGATAGTAGAA 58.835 40.741 0.00 0.00 37.14 2.10
139 140 9.226606 CATTCTCTAGGTGGTAGATAGTAGAAG 57.773 40.741 0.00 0.00 37.14 2.85
140 141 7.934354 TCTCTAGGTGGTAGATAGTAGAAGT 57.066 40.000 0.00 0.00 37.14 3.01
141 142 8.334522 TCTCTAGGTGGTAGATAGTAGAAGTT 57.665 38.462 0.00 0.00 37.14 2.66
142 143 9.444668 TCTCTAGGTGGTAGATAGTAGAAGTTA 57.555 37.037 0.00 0.00 37.14 2.24
147 148 9.411189 AGGTGGTAGATAGTAGAAGTTAAGAAG 57.589 37.037 0.00 0.00 0.00 2.85
148 149 9.406113 GGTGGTAGATAGTAGAAGTTAAGAAGA 57.594 37.037 0.00 0.00 0.00 2.87
150 151 9.406113 TGGTAGATAGTAGAAGTTAAGAAGACC 57.594 37.037 0.00 0.00 0.00 3.85
151 152 9.406113 GGTAGATAGTAGAAGTTAAGAAGACCA 57.594 37.037 0.00 0.00 0.00 4.02
161 162 9.232473 AGAAGTTAAGAAGACCATTTTCATACC 57.768 33.333 0.00 0.00 0.00 2.73
162 163 9.232473 GAAGTTAAGAAGACCATTTTCATACCT 57.768 33.333 0.00 0.00 0.00 3.08
163 164 8.567285 AGTTAAGAAGACCATTTTCATACCTG 57.433 34.615 0.00 0.00 0.00 4.00
164 165 8.383175 AGTTAAGAAGACCATTTTCATACCTGA 58.617 33.333 0.00 0.00 0.00 3.86
165 166 9.010029 GTTAAGAAGACCATTTTCATACCTGAA 57.990 33.333 0.00 0.00 39.62 3.02
166 167 9.581289 TTAAGAAGACCATTTTCATACCTGAAA 57.419 29.630 0.00 0.00 46.92 2.69
181 182 9.739276 TCATACCTGAAAGTGAATGTTTAATCT 57.261 29.630 0.00 0.00 0.00 2.40
184 185 8.567285 ACCTGAAAGTGAATGTTTAATCTAGG 57.433 34.615 0.00 0.00 0.00 3.02
185 186 8.383175 ACCTGAAAGTGAATGTTTAATCTAGGA 58.617 33.333 0.00 0.00 0.00 2.94
186 187 9.231297 CCTGAAAGTGAATGTTTAATCTAGGAA 57.769 33.333 0.00 0.00 0.00 3.36
188 189 9.231297 TGAAAGTGAATGTTTAATCTAGGAAGG 57.769 33.333 0.00 0.00 0.00 3.46
189 190 9.232473 GAAAGTGAATGTTTAATCTAGGAAGGT 57.768 33.333 0.00 0.00 0.00 3.50
190 191 8.794335 AAGTGAATGTTTAATCTAGGAAGGTC 57.206 34.615 0.00 0.00 0.00 3.85
191 192 7.918076 AGTGAATGTTTAATCTAGGAAGGTCA 58.082 34.615 0.00 0.00 0.00 4.02
192 193 8.383175 AGTGAATGTTTAATCTAGGAAGGTCAA 58.617 33.333 0.00 0.00 0.00 3.18
193 194 9.178758 GTGAATGTTTAATCTAGGAAGGTCAAT 57.821 33.333 0.00 0.00 0.00 2.57
203 204 8.846423 ATCTAGGAAGGTCAATAGAAAGAAGA 57.154 34.615 0.00 0.00 0.00 2.87
204 205 8.846423 TCTAGGAAGGTCAATAGAAAGAAGAT 57.154 34.615 0.00 0.00 0.00 2.40
205 206 9.937876 TCTAGGAAGGTCAATAGAAAGAAGATA 57.062 33.333 0.00 0.00 0.00 1.98
208 209 8.826765 AGGAAGGTCAATAGAAAGAAGATAACA 58.173 33.333 0.00 0.00 0.00 2.41
209 210 8.884726 GGAAGGTCAATAGAAAGAAGATAACAC 58.115 37.037 0.00 0.00 0.00 3.32
210 211 8.794335 AAGGTCAATAGAAAGAAGATAACACC 57.206 34.615 0.00 0.00 0.00 4.16
211 212 7.918076 AGGTCAATAGAAAGAAGATAACACCA 58.082 34.615 0.00 0.00 0.00 4.17
212 213 8.383175 AGGTCAATAGAAAGAAGATAACACCAA 58.617 33.333 0.00 0.00 0.00 3.67
213 214 8.669243 GGTCAATAGAAAGAAGATAACACCAAG 58.331 37.037 0.00 0.00 0.00 3.61
214 215 9.220767 GTCAATAGAAAGAAGATAACACCAAGT 57.779 33.333 0.00 0.00 0.00 3.16
235 236 7.820648 CAAGTATTTGGAATAGCAACTGAACT 58.179 34.615 0.00 0.00 0.00 3.01
236 237 7.383102 AGTATTTGGAATAGCAACTGAACTG 57.617 36.000 0.00 0.00 0.00 3.16
237 238 7.168219 AGTATTTGGAATAGCAACTGAACTGA 58.832 34.615 0.00 0.00 0.00 3.41
238 239 6.899393 ATTTGGAATAGCAACTGAACTGAA 57.101 33.333 0.00 0.00 0.00 3.02
239 240 5.689383 TTGGAATAGCAACTGAACTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
240 241 4.973168 TGGAATAGCAACTGAACTGAACT 58.027 39.130 0.00 0.00 0.00 3.01
241 242 4.756642 TGGAATAGCAACTGAACTGAACTG 59.243 41.667 0.00 0.00 0.00 3.16
242 243 4.757149 GGAATAGCAACTGAACTGAACTGT 59.243 41.667 0.00 0.00 0.00 3.55
243 244 5.932303 GGAATAGCAACTGAACTGAACTGTA 59.068 40.000 0.00 0.00 0.00 2.74
244 245 6.426937 GGAATAGCAACTGAACTGAACTGTAA 59.573 38.462 0.00 0.00 0.00 2.41
245 246 7.119846 GGAATAGCAACTGAACTGAACTGTAAT 59.880 37.037 0.00 0.00 0.00 1.89
246 247 5.931441 AGCAACTGAACTGAACTGTAATC 57.069 39.130 0.00 0.00 0.00 1.75
247 248 4.757149 AGCAACTGAACTGAACTGTAATCC 59.243 41.667 0.00 0.00 0.00 3.01
248 249 4.083271 GCAACTGAACTGAACTGTAATCCC 60.083 45.833 0.00 0.00 0.00 3.85
249 250 5.308825 CAACTGAACTGAACTGTAATCCCT 58.691 41.667 0.00 0.00 0.00 4.20
250 251 5.153950 ACTGAACTGAACTGTAATCCCTC 57.846 43.478 0.00 0.00 0.00 4.30
251 252 4.020128 ACTGAACTGAACTGTAATCCCTCC 60.020 45.833 0.00 0.00 0.00 4.30
252 253 3.056107 TGAACTGAACTGTAATCCCTCCG 60.056 47.826 0.00 0.00 0.00 4.63
253 254 2.537143 ACTGAACTGTAATCCCTCCGT 58.463 47.619 0.00 0.00 0.00 4.69
254 255 2.904434 ACTGAACTGTAATCCCTCCGTT 59.096 45.455 0.00 0.00 0.00 4.44
255 256 3.056035 ACTGAACTGTAATCCCTCCGTTC 60.056 47.826 0.00 0.00 33.34 3.95
256 257 2.235402 TGAACTGTAATCCCTCCGTTCC 59.765 50.000 0.00 0.00 32.11 3.62
257 258 1.946984 ACTGTAATCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
258 259 2.478292 ACTGTAATCCCTCCGTTCCAT 58.522 47.619 0.00 0.00 0.00 3.41
259 260 3.649843 ACTGTAATCCCTCCGTTCCATA 58.350 45.455 0.00 0.00 0.00 2.74
260 261 4.035112 ACTGTAATCCCTCCGTTCCATAA 58.965 43.478 0.00 0.00 0.00 1.90
261 262 4.658901 ACTGTAATCCCTCCGTTCCATAAT 59.341 41.667 0.00 0.00 0.00 1.28
262 263 5.132144 ACTGTAATCCCTCCGTTCCATAATT 59.868 40.000 0.00 0.00 0.00 1.40
263 264 6.328148 ACTGTAATCCCTCCGTTCCATAATTA 59.672 38.462 0.00 0.00 0.00 1.40
264 265 7.017254 ACTGTAATCCCTCCGTTCCATAATTAT 59.983 37.037 0.00 0.00 0.00 1.28
265 266 7.751646 TGTAATCCCTCCGTTCCATAATTATT 58.248 34.615 0.00 0.00 0.00 1.40
266 267 7.663905 TGTAATCCCTCCGTTCCATAATTATTG 59.336 37.037 0.00 0.00 0.00 1.90
267 268 5.640158 TCCCTCCGTTCCATAATTATTGT 57.360 39.130 0.00 0.00 0.00 2.71
268 269 5.617252 TCCCTCCGTTCCATAATTATTGTC 58.383 41.667 0.00 0.00 0.00 3.18
269 270 4.451096 CCCTCCGTTCCATAATTATTGTCG 59.549 45.833 0.00 3.30 0.00 4.35
270 271 4.084013 CCTCCGTTCCATAATTATTGTCGC 60.084 45.833 0.00 0.00 0.00 5.19
271 272 3.491639 TCCGTTCCATAATTATTGTCGCG 59.508 43.478 0.00 0.00 0.00 5.87
272 273 3.363575 CCGTTCCATAATTATTGTCGCGG 60.364 47.826 6.13 5.33 0.00 6.46
273 274 3.246699 CGTTCCATAATTATTGTCGCGGT 59.753 43.478 6.13 0.00 0.00 5.68
274 275 4.260456 CGTTCCATAATTATTGTCGCGGTT 60.260 41.667 6.13 0.00 0.00 4.44
275 276 5.575019 GTTCCATAATTATTGTCGCGGTTT 58.425 37.500 6.13 0.00 0.00 3.27
276 277 5.821516 TCCATAATTATTGTCGCGGTTTT 57.178 34.783 6.13 0.00 0.00 2.43
277 278 6.922247 TCCATAATTATTGTCGCGGTTTTA 57.078 33.333 6.13 0.00 0.00 1.52
278 279 7.499321 TCCATAATTATTGTCGCGGTTTTAT 57.501 32.000 6.13 0.00 0.00 1.40
279 280 7.932335 TCCATAATTATTGTCGCGGTTTTATT 58.068 30.769 6.13 2.53 0.00 1.40
280 281 8.407064 TCCATAATTATTGTCGCGGTTTTATTT 58.593 29.630 6.13 0.00 0.00 1.40
281 282 8.476142 CCATAATTATTGTCGCGGTTTTATTTG 58.524 33.333 6.13 2.33 0.00 2.32
282 283 9.227490 CATAATTATTGTCGCGGTTTTATTTGA 57.773 29.630 6.13 0.00 0.00 2.69
283 284 9.790389 ATAATTATTGTCGCGGTTTTATTTGAA 57.210 25.926 6.13 0.00 0.00 2.69
284 285 8.522178 AATTATTGTCGCGGTTTTATTTGAAA 57.478 26.923 6.13 0.00 0.00 2.69
285 286 8.696410 ATTATTGTCGCGGTTTTATTTGAAAT 57.304 26.923 6.13 0.00 0.00 2.17
286 287 8.522178 TTATTGTCGCGGTTTTATTTGAAATT 57.478 26.923 6.13 0.00 0.00 1.82
287 288 6.830114 TTGTCGCGGTTTTATTTGAAATTT 57.170 29.167 6.13 0.00 0.00 1.82
288 289 6.204075 TGTCGCGGTTTTATTTGAAATTTG 57.796 33.333 6.13 0.00 0.00 2.32
289 290 5.977725 TGTCGCGGTTTTATTTGAAATTTGA 59.022 32.000 6.13 0.00 0.00 2.69
290 291 6.475727 TGTCGCGGTTTTATTTGAAATTTGAA 59.524 30.769 6.13 0.00 0.00 2.69
291 292 6.783759 GTCGCGGTTTTATTTGAAATTTGAAC 59.216 34.615 6.13 0.00 0.00 3.18
292 293 6.697892 TCGCGGTTTTATTTGAAATTTGAACT 59.302 30.769 6.13 0.00 0.00 3.01
293 294 7.861372 TCGCGGTTTTATTTGAAATTTGAACTA 59.139 29.630 6.13 0.00 0.00 2.24
294 295 8.480853 CGCGGTTTTATTTGAAATTTGAACTAA 58.519 29.630 0.00 0.00 0.00 2.24
302 303 6.576551 TTGAAATTTGAACTAAAACCACGC 57.423 33.333 0.00 0.00 0.00 5.34
303 304 5.044558 TGAAATTTGAACTAAAACCACGCC 58.955 37.500 0.00 0.00 0.00 5.68
304 305 4.657436 AATTTGAACTAAAACCACGCCA 57.343 36.364 0.00 0.00 0.00 5.69
305 306 4.657436 ATTTGAACTAAAACCACGCCAA 57.343 36.364 0.00 0.00 0.00 4.52
306 307 4.657436 TTTGAACTAAAACCACGCCAAT 57.343 36.364 0.00 0.00 0.00 3.16
307 308 5.769484 TTTGAACTAAAACCACGCCAATA 57.231 34.783 0.00 0.00 0.00 1.90
308 309 5.769484 TTGAACTAAAACCACGCCAATAA 57.231 34.783 0.00 0.00 0.00 1.40
309 310 5.968528 TGAACTAAAACCACGCCAATAAT 57.031 34.783 0.00 0.00 0.00 1.28
310 311 6.334102 TGAACTAAAACCACGCCAATAATT 57.666 33.333 0.00 0.00 0.00 1.40
311 312 7.450124 TGAACTAAAACCACGCCAATAATTA 57.550 32.000 0.00 0.00 0.00 1.40
312 313 8.057536 TGAACTAAAACCACGCCAATAATTAT 57.942 30.769 0.00 0.00 0.00 1.28
313 314 7.971168 TGAACTAAAACCACGCCAATAATTATG 59.029 33.333 0.00 0.00 0.00 1.90
314 315 6.801575 ACTAAAACCACGCCAATAATTATGG 58.198 36.000 0.00 4.41 41.08 2.74
315 316 5.923733 AAAACCACGCCAATAATTATGGA 57.076 34.783 14.50 0.00 40.56 3.41
316 317 5.923733 AAACCACGCCAATAATTATGGAA 57.076 34.783 14.50 0.00 40.56 3.53
317 318 6.478512 AAACCACGCCAATAATTATGGAAT 57.521 33.333 14.50 3.02 40.56 3.01
318 319 5.452078 ACCACGCCAATAATTATGGAATG 57.548 39.130 14.50 11.39 40.56 2.67
319 320 4.280677 ACCACGCCAATAATTATGGAATGG 59.719 41.667 20.60 20.60 44.25 3.16
320 321 4.522405 CCACGCCAATAATTATGGAATGGA 59.478 41.667 15.27 0.00 42.67 3.41
321 322 5.335897 CCACGCCAATAATTATGGAATGGAG 60.336 44.000 15.27 14.18 42.67 3.86
322 323 4.766891 ACGCCAATAATTATGGAATGGAGG 59.233 41.667 15.27 9.60 40.56 4.30
323 324 5.009631 CGCCAATAATTATGGAATGGAGGA 58.990 41.667 15.27 0.00 40.56 3.71
324 325 5.476599 CGCCAATAATTATGGAATGGAGGAA 59.523 40.000 15.27 0.00 40.56 3.36
325 326 6.349611 CGCCAATAATTATGGAATGGAGGAAG 60.350 42.308 15.27 1.14 40.56 3.46
326 327 6.494835 GCCAATAATTATGGAATGGAGGAAGT 59.505 38.462 15.27 0.00 40.56 3.01
327 328 7.669722 GCCAATAATTATGGAATGGAGGAAGTA 59.330 37.037 15.27 0.00 40.56 2.24
328 329 9.236006 CCAATAATTATGGAATGGAGGAAGTAG 57.764 37.037 7.81 0.00 40.56 2.57
329 330 9.799106 CAATAATTATGGAATGGAGGAAGTAGT 57.201 33.333 0.00 0.00 0.00 2.73
332 333 8.568617 AATTATGGAATGGAGGAAGTAGTACT 57.431 34.615 0.00 0.00 0.00 2.73
333 334 9.670442 AATTATGGAATGGAGGAAGTAGTACTA 57.330 33.333 2.50 0.00 0.00 1.82
334 335 6.980416 ATGGAATGGAGGAAGTAGTACTAC 57.020 41.667 23.03 23.03 36.35 2.73
335 336 5.206587 TGGAATGGAGGAAGTAGTACTACC 58.793 45.833 25.97 13.61 36.75 3.18
336 337 5.043582 TGGAATGGAGGAAGTAGTACTACCT 60.044 44.000 25.97 17.83 36.75 3.08
337 338 5.535783 GGAATGGAGGAAGTAGTACTACCTC 59.464 48.000 25.97 23.60 44.21 3.85
342 343 5.064314 AGGAAGTAGTACTACCTCCATCC 57.936 47.826 35.97 27.94 45.01 3.51
343 344 4.140971 AGGAAGTAGTACTACCTCCATCCC 60.141 50.000 35.97 22.70 45.01 3.85
344 345 3.899612 AGTAGTACTACCTCCATCCCC 57.100 52.381 25.97 1.02 36.75 4.81
345 346 3.136896 AGTAGTACTACCTCCATCCCCA 58.863 50.000 25.97 0.00 36.75 4.96
346 347 3.534747 AGTAGTACTACCTCCATCCCCAA 59.465 47.826 25.97 0.00 36.75 4.12
347 348 3.047695 AGTACTACCTCCATCCCCAAG 57.952 52.381 0.00 0.00 0.00 3.61
348 349 2.318207 AGTACTACCTCCATCCCCAAGT 59.682 50.000 0.00 0.00 0.00 3.16
349 350 3.534747 AGTACTACCTCCATCCCCAAGTA 59.465 47.826 0.00 0.00 0.00 2.24
350 351 3.502051 ACTACCTCCATCCCCAAGTAA 57.498 47.619 0.00 0.00 0.00 2.24
351 352 3.385115 ACTACCTCCATCCCCAAGTAAG 58.615 50.000 0.00 0.00 0.00 2.34
352 353 2.361085 ACCTCCATCCCCAAGTAAGT 57.639 50.000 0.00 0.00 0.00 2.24
353 354 1.916181 ACCTCCATCCCCAAGTAAGTG 59.084 52.381 0.00 0.00 0.00 3.16
354 355 1.916181 CCTCCATCCCCAAGTAAGTGT 59.084 52.381 0.00 0.00 0.00 3.55
355 356 2.092914 CCTCCATCCCCAAGTAAGTGTC 60.093 54.545 0.00 0.00 0.00 3.67
356 357 1.553248 TCCATCCCCAAGTAAGTGTCG 59.447 52.381 0.00 0.00 0.00 4.35
357 358 1.369625 CATCCCCAAGTAAGTGTCGC 58.630 55.000 0.00 0.00 0.00 5.19
358 359 1.066143 CATCCCCAAGTAAGTGTCGCT 60.066 52.381 0.00 0.00 0.00 4.93
359 360 0.320374 TCCCCAAGTAAGTGTCGCTG 59.680 55.000 0.00 0.00 0.00 5.18
360 361 0.320374 CCCCAAGTAAGTGTCGCTGA 59.680 55.000 0.00 0.00 0.00 4.26
361 362 1.066143 CCCCAAGTAAGTGTCGCTGAT 60.066 52.381 0.00 0.00 0.00 2.90
362 363 2.615493 CCCCAAGTAAGTGTCGCTGATT 60.615 50.000 0.00 0.00 0.00 2.57
363 364 3.074412 CCCAAGTAAGTGTCGCTGATTT 58.926 45.455 0.00 0.00 0.00 2.17
364 365 4.250464 CCCAAGTAAGTGTCGCTGATTTA 58.750 43.478 0.00 0.00 0.00 1.40
365 366 4.330074 CCCAAGTAAGTGTCGCTGATTTAG 59.670 45.833 0.00 0.00 0.00 1.85
366 367 4.929808 CCAAGTAAGTGTCGCTGATTTAGT 59.070 41.667 0.00 0.00 0.00 2.24
367 368 6.097356 CCAAGTAAGTGTCGCTGATTTAGTA 58.903 40.000 0.00 0.00 0.00 1.82
368 369 6.034683 CCAAGTAAGTGTCGCTGATTTAGTAC 59.965 42.308 0.00 0.00 0.00 2.73
369 370 6.263516 AGTAAGTGTCGCTGATTTAGTACA 57.736 37.500 0.00 0.00 0.00 2.90
414 415 6.312918 TCTTTAAGAACATTTCTTCCCGATCG 59.687 38.462 8.51 8.51 46.62 3.69
488 489 3.855689 ATTGCAACTATGTTCTGCCAC 57.144 42.857 0.00 0.00 35.13 5.01
509 510 5.277825 CACATCTCTCCTCTTGTAACGATC 58.722 45.833 0.00 0.00 0.00 3.69
517 518 5.833082 TCCTCTTGTAACGATCTAATCAGC 58.167 41.667 0.00 0.00 0.00 4.26
521 522 6.266323 TCTTGTAACGATCTAATCAGCACTC 58.734 40.000 0.00 0.00 0.00 3.51
549 550 7.361286 GGCTTATTGTTTCACTACTTCCTTCTG 60.361 40.741 0.00 0.00 0.00 3.02
623 628 4.587211 TTACTTTGTTGTGTCACGTGTC 57.413 40.909 16.51 10.98 0.00 3.67
629 634 3.183754 TGTTGTGTCACGTGTCTTACTG 58.816 45.455 16.51 0.00 0.00 2.74
643 695 6.414109 CGTGTCTTACTGTCGGTCATTAATAG 59.586 42.308 0.00 0.00 0.00 1.73
738 790 3.960102 TCCAAATAAATCAGGGCCATCAC 59.040 43.478 6.18 0.00 0.00 3.06
758 810 5.771469 TCACTGCATGTTGATTAACCAAAG 58.229 37.500 0.00 0.00 35.92 2.77
765 817 7.066887 TGCATGTTGATTAACCAAAGATACGAT 59.933 33.333 0.00 0.00 35.92 3.73
766 818 8.556194 GCATGTTGATTAACCAAAGATACGATA 58.444 33.333 0.00 0.00 35.92 2.92
850 905 0.320771 CGTGGTGTAAAGAGCCAGCT 60.321 55.000 0.00 0.00 32.31 4.24
851 906 1.160137 GTGGTGTAAAGAGCCAGCTG 58.840 55.000 6.78 6.78 32.31 4.24
1015 1087 7.759489 AATTAACAAATGCAGACTCTTACCA 57.241 32.000 0.00 0.00 0.00 3.25
1104 1179 2.996631 ACATGCTCCAAGATTCCTGAC 58.003 47.619 0.00 0.00 0.00 3.51
1137 1212 0.534877 ATTGTGTTGGCGTGCTCTCA 60.535 50.000 0.00 0.00 0.00 3.27
1305 1380 7.749666 AGTATATGGTTGATTTGATAGTGGCT 58.250 34.615 0.00 0.00 0.00 4.75
1321 1396 0.955428 GGCTGCCGTTGATGACTTGA 60.955 55.000 1.35 0.00 0.00 3.02
1599 1690 0.324943 ATGTCGTGTCCCCCTTTCTG 59.675 55.000 0.00 0.00 0.00 3.02
1623 1714 6.252441 TGTTTTGCTTGTTTAAACATGAGTCG 59.748 34.615 28.78 13.14 38.95 4.18
1711 1802 3.433615 GCAGATCTCAACTGTGGTACAAC 59.566 47.826 0.00 0.00 44.16 3.32
1739 1831 4.571984 TCATGGATTCATTAGCAGTGAACG 59.428 41.667 0.00 0.00 38.31 3.95
1754 1846 2.804527 GTGAACGGTTTACTCTTGTCCC 59.195 50.000 8.38 0.00 0.00 4.46
1758 1850 1.338769 CGGTTTACTCTTGTCCCCCAG 60.339 57.143 0.00 0.00 0.00 4.45
1769 1861 1.561076 TGTCCCCCAGAACATGATGAG 59.439 52.381 0.00 0.00 0.00 2.90
1775 1867 1.081094 CAGAACATGATGAGCACGCA 58.919 50.000 0.00 0.00 0.00 5.24
1904 1996 4.815533 TCTGAGAACCAGATCTTCCAAG 57.184 45.455 0.00 0.00 46.38 3.61
2068 2160 1.003580 CACTATGCCCAACTGTCCTGT 59.996 52.381 0.00 0.00 0.00 4.00
2092 2184 1.300971 GCCTGCAATCTGTCTGCGAA 61.301 55.000 0.00 0.00 42.97 4.70
2170 2264 7.711339 GTCACTAGTTTCCCTCGATTTCATTAT 59.289 37.037 0.00 0.00 0.00 1.28
2179 2273 3.804036 TCGATTTCATTATGGGCTTCGT 58.196 40.909 0.00 0.00 0.00 3.85
2180 2274 3.559655 TCGATTTCATTATGGGCTTCGTG 59.440 43.478 0.00 0.00 0.00 4.35
2186 2280 3.673956 TATGGGCTTCGTGGTGGCG 62.674 63.158 0.00 0.00 0.00 5.69
2236 2335 4.520846 GGCATTGCGGACGAAGCG 62.521 66.667 1.91 0.00 37.44 4.68
2315 2414 7.617041 AGTATTTGGAATAGCAACTGAACTC 57.383 36.000 0.00 0.00 0.00 3.01
2331 2435 3.907474 TGAACTCAACTGTAATCCCTCCA 59.093 43.478 0.00 0.00 0.00 3.86
2350 2454 8.058235 TCCCTCCATTTCATAATTATTGTCACA 58.942 33.333 0.00 0.00 0.00 3.58
2413 2517 5.677319 TGGAATGGAGGAAGTAGTACTTG 57.323 43.478 20.21 0.00 38.80 3.16
2424 2528 1.547372 GTAGTACTTGCTCCGTCCCAA 59.453 52.381 0.00 0.00 0.00 4.12
2447 2551 7.903431 CCAAAATAAGTGTCGCTGATTTAGTAC 59.097 37.037 8.84 0.00 37.29 2.73
2459 2563 8.472413 TCGCTGATTTAGTACAAAGTTATAGGT 58.528 33.333 0.00 0.00 0.00 3.08
2492 2596 3.886123 ACTTAGGTTACACATGGCATCC 58.114 45.455 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.077991 TCTTGTGCTTTCTCAGAAATAAACATG 58.922 33.333 0.00 8.03 0.00 3.21
1 2 8.169977 TCTTGTGCTTTCTCAGAAATAAACAT 57.830 30.769 0.00 0.00 0.00 2.71
3 4 7.865707 TCTCTTGTGCTTTCTCAGAAATAAAC 58.134 34.615 0.00 0.61 0.00 2.01
4 5 8.345565 GTTCTCTTGTGCTTTCTCAGAAATAAA 58.654 33.333 0.00 0.00 0.00 1.40
5 6 7.498900 TGTTCTCTTGTGCTTTCTCAGAAATAA 59.501 33.333 0.00 0.00 0.00 1.40
8 9 5.065218 GTGTTCTCTTGTGCTTTCTCAGAAA 59.935 40.000 0.00 0.00 0.00 2.52
10 11 4.122776 GTGTTCTCTTGTGCTTTCTCAGA 58.877 43.478 0.00 0.00 0.00 3.27
11 12 3.873361 TGTGTTCTCTTGTGCTTTCTCAG 59.127 43.478 0.00 0.00 0.00 3.35
12 13 3.623060 GTGTGTTCTCTTGTGCTTTCTCA 59.377 43.478 0.00 0.00 0.00 3.27
13 14 3.873952 AGTGTGTTCTCTTGTGCTTTCTC 59.126 43.478 0.00 0.00 0.00 2.87
14 15 3.878778 AGTGTGTTCTCTTGTGCTTTCT 58.121 40.909 0.00 0.00 0.00 2.52
15 16 4.622701 AAGTGTGTTCTCTTGTGCTTTC 57.377 40.909 0.00 0.00 0.00 2.62
16 17 4.702131 AGAAAGTGTGTTCTCTTGTGCTTT 59.298 37.500 0.00 0.00 32.16 3.51
17 18 4.265073 AGAAAGTGTGTTCTCTTGTGCTT 58.735 39.130 0.00 0.00 32.16 3.91
18 19 3.878778 AGAAAGTGTGTTCTCTTGTGCT 58.121 40.909 0.00 0.00 32.16 4.40
19 20 5.064707 TGTTAGAAAGTGTGTTCTCTTGTGC 59.935 40.000 0.00 0.00 38.75 4.57
20 21 6.662414 TGTTAGAAAGTGTGTTCTCTTGTG 57.338 37.500 0.00 0.00 38.75 3.33
21 22 7.679638 GCAATGTTAGAAAGTGTGTTCTCTTGT 60.680 37.037 0.00 0.00 38.75 3.16
22 23 6.634436 GCAATGTTAGAAAGTGTGTTCTCTTG 59.366 38.462 0.00 0.00 38.75 3.02
23 24 6.238759 GGCAATGTTAGAAAGTGTGTTCTCTT 60.239 38.462 0.00 0.00 38.75 2.85
24 25 5.239525 GGCAATGTTAGAAAGTGTGTTCTCT 59.760 40.000 0.00 0.00 38.75 3.10
25 26 5.008613 TGGCAATGTTAGAAAGTGTGTTCTC 59.991 40.000 0.00 0.00 38.75 2.87
26 27 4.887071 TGGCAATGTTAGAAAGTGTGTTCT 59.113 37.500 0.00 0.00 40.89 3.01
27 28 5.181690 TGGCAATGTTAGAAAGTGTGTTC 57.818 39.130 0.00 0.00 0.00 3.18
28 29 5.127031 ACTTGGCAATGTTAGAAAGTGTGTT 59.873 36.000 0.00 0.00 0.00 3.32
29 30 4.644685 ACTTGGCAATGTTAGAAAGTGTGT 59.355 37.500 0.00 0.00 0.00 3.72
30 31 5.186996 ACTTGGCAATGTTAGAAAGTGTG 57.813 39.130 0.00 0.00 0.00 3.82
31 32 4.887071 TGACTTGGCAATGTTAGAAAGTGT 59.113 37.500 0.00 0.00 0.00 3.55
32 33 5.437289 TGACTTGGCAATGTTAGAAAGTG 57.563 39.130 0.00 0.00 0.00 3.16
33 34 5.769662 TGATGACTTGGCAATGTTAGAAAGT 59.230 36.000 0.00 0.00 0.00 2.66
34 35 6.258230 TGATGACTTGGCAATGTTAGAAAG 57.742 37.500 0.00 0.00 0.00 2.62
35 36 6.647334 TTGATGACTTGGCAATGTTAGAAA 57.353 33.333 0.00 0.00 0.00 2.52
36 37 5.335897 GCTTGATGACTTGGCAATGTTAGAA 60.336 40.000 0.00 0.00 0.00 2.10
37 38 4.156556 GCTTGATGACTTGGCAATGTTAGA 59.843 41.667 0.00 0.00 0.00 2.10
38 39 4.418392 GCTTGATGACTTGGCAATGTTAG 58.582 43.478 0.00 0.00 0.00 2.34
39 40 3.193267 GGCTTGATGACTTGGCAATGTTA 59.807 43.478 0.00 0.00 0.00 2.41
40 41 2.028748 GGCTTGATGACTTGGCAATGTT 60.029 45.455 0.00 0.00 0.00 2.71
41 42 1.547372 GGCTTGATGACTTGGCAATGT 59.453 47.619 0.00 0.77 0.00 2.71
42 43 1.822990 AGGCTTGATGACTTGGCAATG 59.177 47.619 0.00 0.00 0.00 2.82
43 44 2.097825 GAGGCTTGATGACTTGGCAAT 58.902 47.619 0.00 0.00 31.30 3.56
44 45 1.538047 GAGGCTTGATGACTTGGCAA 58.462 50.000 0.00 0.00 31.30 4.52
45 46 0.674581 CGAGGCTTGATGACTTGGCA 60.675 55.000 0.00 0.00 31.30 4.92
46 47 0.674895 ACGAGGCTTGATGACTTGGC 60.675 55.000 9.20 0.00 39.61 4.52
47 48 2.672961 TACGAGGCTTGATGACTTGG 57.327 50.000 9.20 0.00 39.61 3.61
48 49 6.662414 TTTTATACGAGGCTTGATGACTTG 57.338 37.500 9.20 0.00 41.14 3.16
70 71 9.010029 ACGACATTCAGGTCATAATTAGTTTTT 57.990 29.630 0.00 0.00 37.66 1.94
71 72 8.561738 ACGACATTCAGGTCATAATTAGTTTT 57.438 30.769 0.00 0.00 37.66 2.43
72 73 7.280205 GGACGACATTCAGGTCATAATTAGTTT 59.720 37.037 0.00 0.00 37.66 2.66
73 74 6.761714 GGACGACATTCAGGTCATAATTAGTT 59.238 38.462 0.00 0.00 37.66 2.24
74 75 6.098409 AGGACGACATTCAGGTCATAATTAGT 59.902 38.462 0.00 0.00 37.66 2.24
75 76 6.516718 AGGACGACATTCAGGTCATAATTAG 58.483 40.000 0.00 0.00 37.66 1.73
76 77 6.323996 AGAGGACGACATTCAGGTCATAATTA 59.676 38.462 0.00 0.00 37.66 1.40
77 78 5.129485 AGAGGACGACATTCAGGTCATAATT 59.871 40.000 0.00 0.00 37.66 1.40
78 79 4.651503 AGAGGACGACATTCAGGTCATAAT 59.348 41.667 0.00 0.00 37.66 1.28
79 80 4.023980 AGAGGACGACATTCAGGTCATAA 58.976 43.478 0.00 0.00 37.66 1.90
80 81 3.381590 CAGAGGACGACATTCAGGTCATA 59.618 47.826 0.00 0.00 37.66 2.15
81 82 2.167281 CAGAGGACGACATTCAGGTCAT 59.833 50.000 0.00 0.00 37.66 3.06
82 83 1.546029 CAGAGGACGACATTCAGGTCA 59.454 52.381 0.00 0.00 37.66 4.02
83 84 1.546476 ACAGAGGACGACATTCAGGTC 59.454 52.381 0.00 0.00 34.42 3.85
84 85 1.633774 ACAGAGGACGACATTCAGGT 58.366 50.000 0.00 0.00 0.00 4.00
85 86 2.751166 AACAGAGGACGACATTCAGG 57.249 50.000 0.00 0.00 0.00 3.86
86 87 4.810790 AGTAAACAGAGGACGACATTCAG 58.189 43.478 0.00 0.00 0.00 3.02
87 88 4.866508 AGTAAACAGAGGACGACATTCA 57.133 40.909 0.00 0.00 0.00 2.57
88 89 5.232414 GCATAGTAAACAGAGGACGACATTC 59.768 44.000 0.00 0.00 0.00 2.67
89 90 5.109903 GCATAGTAAACAGAGGACGACATT 58.890 41.667 0.00 0.00 0.00 2.71
90 91 4.441634 GGCATAGTAAACAGAGGACGACAT 60.442 45.833 0.00 0.00 0.00 3.06
91 92 3.119245 GGCATAGTAAACAGAGGACGACA 60.119 47.826 0.00 0.00 0.00 4.35
92 93 3.119245 TGGCATAGTAAACAGAGGACGAC 60.119 47.826 0.00 0.00 0.00 4.34
93 94 3.093814 TGGCATAGTAAACAGAGGACGA 58.906 45.455 0.00 0.00 0.00 4.20
94 95 3.520290 TGGCATAGTAAACAGAGGACG 57.480 47.619 0.00 0.00 0.00 4.79
95 96 5.675538 AGAATGGCATAGTAAACAGAGGAC 58.324 41.667 0.00 0.00 0.00 3.85
96 97 5.663106 AGAGAATGGCATAGTAAACAGAGGA 59.337 40.000 0.00 0.00 0.00 3.71
97 98 5.923204 AGAGAATGGCATAGTAAACAGAGG 58.077 41.667 0.00 0.00 0.00 3.69
98 99 7.151308 CCTAGAGAATGGCATAGTAAACAGAG 58.849 42.308 0.00 0.00 0.00 3.35
99 100 6.611642 ACCTAGAGAATGGCATAGTAAACAGA 59.388 38.462 0.00 0.00 0.00 3.41
100 101 6.703607 CACCTAGAGAATGGCATAGTAAACAG 59.296 42.308 0.00 0.00 0.00 3.16
101 102 6.408092 CCACCTAGAGAATGGCATAGTAAACA 60.408 42.308 0.00 0.00 0.00 2.83
102 103 5.992217 CCACCTAGAGAATGGCATAGTAAAC 59.008 44.000 0.00 0.00 0.00 2.01
103 104 5.665812 ACCACCTAGAGAATGGCATAGTAAA 59.334 40.000 0.00 0.00 36.96 2.01
104 105 5.216622 ACCACCTAGAGAATGGCATAGTAA 58.783 41.667 0.00 0.00 36.96 2.24
105 106 4.816126 ACCACCTAGAGAATGGCATAGTA 58.184 43.478 0.00 0.00 36.96 1.82
106 107 3.658725 ACCACCTAGAGAATGGCATAGT 58.341 45.455 0.00 0.00 36.96 2.12
107 108 5.080337 TCTACCACCTAGAGAATGGCATAG 58.920 45.833 0.00 0.00 36.96 2.23
108 109 5.074746 TCTACCACCTAGAGAATGGCATA 57.925 43.478 0.00 0.00 36.96 3.14
109 110 3.928754 TCTACCACCTAGAGAATGGCAT 58.071 45.455 0.00 0.00 36.96 4.40
110 111 3.398318 TCTACCACCTAGAGAATGGCA 57.602 47.619 0.00 0.00 36.96 4.92
111 112 5.081032 ACTATCTACCACCTAGAGAATGGC 58.919 45.833 0.00 0.00 34.80 4.40
112 113 7.691213 TCTACTATCTACCACCTAGAGAATGG 58.309 42.308 0.00 0.00 34.80 3.16
113 114 9.226606 CTTCTACTATCTACCACCTAGAGAATG 57.773 40.741 0.00 0.00 34.80 2.67
114 115 8.951541 ACTTCTACTATCTACCACCTAGAGAAT 58.048 37.037 0.00 0.00 34.80 2.40
115 116 8.334522 ACTTCTACTATCTACCACCTAGAGAA 57.665 38.462 0.00 0.00 34.80 2.87
116 117 7.934354 ACTTCTACTATCTACCACCTAGAGA 57.066 40.000 0.00 0.00 34.80 3.10
121 122 9.411189 CTTCTTAACTTCTACTATCTACCACCT 57.589 37.037 0.00 0.00 0.00 4.00
122 123 9.406113 TCTTCTTAACTTCTACTATCTACCACC 57.594 37.037 0.00 0.00 0.00 4.61
124 125 9.406113 GGTCTTCTTAACTTCTACTATCTACCA 57.594 37.037 0.00 0.00 0.00 3.25
125 126 9.406113 TGGTCTTCTTAACTTCTACTATCTACC 57.594 37.037 0.00 0.00 0.00 3.18
135 136 9.232473 GGTATGAAAATGGTCTTCTTAACTTCT 57.768 33.333 0.00 0.00 0.00 2.85
136 137 9.232473 AGGTATGAAAATGGTCTTCTTAACTTC 57.768 33.333 0.00 0.00 30.36 3.01
137 138 9.014297 CAGGTATGAAAATGGTCTTCTTAACTT 57.986 33.333 0.00 0.00 31.54 2.66
138 139 8.383175 TCAGGTATGAAAATGGTCTTCTTAACT 58.617 33.333 0.00 0.00 33.18 2.24
139 140 8.561738 TCAGGTATGAAAATGGTCTTCTTAAC 57.438 34.615 0.00 0.00 30.61 2.01
155 156 9.739276 AGATTAAACATTCACTTTCAGGTATGA 57.261 29.630 0.00 0.00 0.00 2.15
158 159 9.667107 CCTAGATTAAACATTCACTTTCAGGTA 57.333 33.333 0.00 0.00 0.00 3.08
159 160 8.383175 TCCTAGATTAAACATTCACTTTCAGGT 58.617 33.333 0.00 0.00 0.00 4.00
160 161 8.792830 TCCTAGATTAAACATTCACTTTCAGG 57.207 34.615 0.00 0.00 0.00 3.86
162 163 9.231297 CCTTCCTAGATTAAACATTCACTTTCA 57.769 33.333 0.00 0.00 0.00 2.69
163 164 9.232473 ACCTTCCTAGATTAAACATTCACTTTC 57.768 33.333 0.00 0.00 0.00 2.62
164 165 9.232473 GACCTTCCTAGATTAAACATTCACTTT 57.768 33.333 0.00 0.00 0.00 2.66
165 166 8.383175 TGACCTTCCTAGATTAAACATTCACTT 58.617 33.333 0.00 0.00 0.00 3.16
166 167 7.918076 TGACCTTCCTAGATTAAACATTCACT 58.082 34.615 0.00 0.00 0.00 3.41
167 168 8.561738 TTGACCTTCCTAGATTAAACATTCAC 57.438 34.615 0.00 0.00 0.00 3.18
177 178 9.273137 TCTTCTTTCTATTGACCTTCCTAGATT 57.727 33.333 0.00 0.00 0.00 2.40
178 179 8.846423 TCTTCTTTCTATTGACCTTCCTAGAT 57.154 34.615 0.00 0.00 0.00 1.98
179 180 8.846423 ATCTTCTTTCTATTGACCTTCCTAGA 57.154 34.615 0.00 0.00 0.00 2.43
182 183 8.826765 TGTTATCTTCTTTCTATTGACCTTCCT 58.173 33.333 0.00 0.00 0.00 3.36
183 184 8.884726 GTGTTATCTTCTTTCTATTGACCTTCC 58.115 37.037 0.00 0.00 0.00 3.46
184 185 8.884726 GGTGTTATCTTCTTTCTATTGACCTTC 58.115 37.037 0.00 0.00 0.00 3.46
185 186 8.383175 TGGTGTTATCTTCTTTCTATTGACCTT 58.617 33.333 0.00 0.00 0.00 3.50
186 187 7.918076 TGGTGTTATCTTCTTTCTATTGACCT 58.082 34.615 0.00 0.00 0.00 3.85
187 188 8.561738 TTGGTGTTATCTTCTTTCTATTGACC 57.438 34.615 0.00 0.00 0.00 4.02
188 189 9.220767 ACTTGGTGTTATCTTCTTTCTATTGAC 57.779 33.333 0.00 0.00 0.00 3.18
194 195 9.014297 CCAAATACTTGGTGTTATCTTCTTTCT 57.986 33.333 0.00 0.00 46.25 2.52
210 211 7.752239 CAGTTCAGTTGCTATTCCAAATACTTG 59.248 37.037 0.00 0.00 0.00 3.16
211 212 7.665559 TCAGTTCAGTTGCTATTCCAAATACTT 59.334 33.333 0.00 0.00 0.00 2.24
212 213 7.168219 TCAGTTCAGTTGCTATTCCAAATACT 58.832 34.615 0.00 0.00 0.00 2.12
213 214 7.377766 TCAGTTCAGTTGCTATTCCAAATAC 57.622 36.000 0.00 0.00 0.00 1.89
214 215 7.665559 AGTTCAGTTCAGTTGCTATTCCAAATA 59.334 33.333 0.00 0.00 0.00 1.40
215 216 6.491403 AGTTCAGTTCAGTTGCTATTCCAAAT 59.509 34.615 0.00 0.00 0.00 2.32
216 217 5.827797 AGTTCAGTTCAGTTGCTATTCCAAA 59.172 36.000 0.00 0.00 0.00 3.28
217 218 5.239306 CAGTTCAGTTCAGTTGCTATTCCAA 59.761 40.000 0.00 0.00 0.00 3.53
218 219 4.756642 CAGTTCAGTTCAGTTGCTATTCCA 59.243 41.667 0.00 0.00 0.00 3.53
219 220 4.757149 ACAGTTCAGTTCAGTTGCTATTCC 59.243 41.667 0.00 0.00 0.00 3.01
220 221 5.931441 ACAGTTCAGTTCAGTTGCTATTC 57.069 39.130 0.00 0.00 0.00 1.75
221 222 7.119846 GGATTACAGTTCAGTTCAGTTGCTATT 59.880 37.037 0.00 0.00 0.00 1.73
222 223 6.595716 GGATTACAGTTCAGTTCAGTTGCTAT 59.404 38.462 0.00 0.00 0.00 2.97
223 224 5.932303 GGATTACAGTTCAGTTCAGTTGCTA 59.068 40.000 0.00 0.00 0.00 3.49
224 225 4.757149 GGATTACAGTTCAGTTCAGTTGCT 59.243 41.667 0.00 0.00 0.00 3.91
225 226 4.083271 GGGATTACAGTTCAGTTCAGTTGC 60.083 45.833 0.00 0.00 0.00 4.17
226 227 5.308825 AGGGATTACAGTTCAGTTCAGTTG 58.691 41.667 0.00 0.00 0.00 3.16
227 228 5.513267 GGAGGGATTACAGTTCAGTTCAGTT 60.513 44.000 0.00 0.00 0.00 3.16
228 229 4.020128 GGAGGGATTACAGTTCAGTTCAGT 60.020 45.833 0.00 0.00 0.00 3.41
229 230 4.508662 GGAGGGATTACAGTTCAGTTCAG 58.491 47.826 0.00 0.00 0.00 3.02
230 231 3.056107 CGGAGGGATTACAGTTCAGTTCA 60.056 47.826 0.00 0.00 0.00 3.18
231 232 3.056035 ACGGAGGGATTACAGTTCAGTTC 60.056 47.826 0.00 0.00 0.00 3.01
232 233 2.904434 ACGGAGGGATTACAGTTCAGTT 59.096 45.455 0.00 0.00 0.00 3.16
233 234 2.537143 ACGGAGGGATTACAGTTCAGT 58.463 47.619 0.00 0.00 0.00 3.41
234 235 3.522553 GAACGGAGGGATTACAGTTCAG 58.477 50.000 0.00 0.00 39.57 3.02
235 236 2.235402 GGAACGGAGGGATTACAGTTCA 59.765 50.000 0.00 0.00 40.78 3.18
236 237 2.235402 TGGAACGGAGGGATTACAGTTC 59.765 50.000 0.00 0.00 39.26 3.01
237 238 2.262637 TGGAACGGAGGGATTACAGTT 58.737 47.619 0.00 0.00 0.00 3.16
238 239 1.946984 TGGAACGGAGGGATTACAGT 58.053 50.000 0.00 0.00 0.00 3.55
239 240 4.682778 TTATGGAACGGAGGGATTACAG 57.317 45.455 0.00 0.00 0.00 2.74
240 241 5.640158 AATTATGGAACGGAGGGATTACA 57.360 39.130 0.00 0.00 0.00 2.41
241 242 7.664318 ACAATAATTATGGAACGGAGGGATTAC 59.336 37.037 6.86 0.00 0.00 1.89
242 243 7.751646 ACAATAATTATGGAACGGAGGGATTA 58.248 34.615 6.86 0.00 0.00 1.75
243 244 6.610830 ACAATAATTATGGAACGGAGGGATT 58.389 36.000 6.86 0.00 0.00 3.01
244 245 6.200878 ACAATAATTATGGAACGGAGGGAT 57.799 37.500 6.86 0.00 0.00 3.85
245 246 5.617252 GACAATAATTATGGAACGGAGGGA 58.383 41.667 6.86 0.00 0.00 4.20
246 247 4.451096 CGACAATAATTATGGAACGGAGGG 59.549 45.833 6.86 0.00 0.00 4.30
247 248 4.084013 GCGACAATAATTATGGAACGGAGG 60.084 45.833 18.08 0.84 0.00 4.30
248 249 4.376008 CGCGACAATAATTATGGAACGGAG 60.376 45.833 0.00 2.23 0.00 4.63
249 250 3.491639 CGCGACAATAATTATGGAACGGA 59.508 43.478 0.00 0.00 0.00 4.69
250 251 3.363575 CCGCGACAATAATTATGGAACGG 60.364 47.826 8.23 16.23 0.00 4.44
251 252 3.246699 ACCGCGACAATAATTATGGAACG 59.753 43.478 8.23 11.81 0.00 3.95
252 253 4.806342 ACCGCGACAATAATTATGGAAC 57.194 40.909 8.23 0.34 0.00 3.62
253 254 5.821516 AAACCGCGACAATAATTATGGAA 57.178 34.783 8.23 0.00 0.00 3.53
254 255 5.821516 AAAACCGCGACAATAATTATGGA 57.178 34.783 8.23 0.00 0.00 3.41
255 256 8.476142 CAAATAAAACCGCGACAATAATTATGG 58.524 33.333 8.23 0.00 0.00 2.74
256 257 9.227490 TCAAATAAAACCGCGACAATAATTATG 57.773 29.630 8.23 0.00 0.00 1.90
257 258 9.790389 TTCAAATAAAACCGCGACAATAATTAT 57.210 25.926 8.23 0.00 0.00 1.28
258 259 9.622004 TTTCAAATAAAACCGCGACAATAATTA 57.378 25.926 8.23 0.00 0.00 1.40
259 260 8.522178 TTTCAAATAAAACCGCGACAATAATT 57.478 26.923 8.23 0.00 0.00 1.40
260 261 8.696410 ATTTCAAATAAAACCGCGACAATAAT 57.304 26.923 8.23 0.00 0.00 1.28
261 262 8.522178 AATTTCAAATAAAACCGCGACAATAA 57.478 26.923 8.23 0.00 0.00 1.40
262 263 8.428536 CAAATTTCAAATAAAACCGCGACAATA 58.571 29.630 8.23 0.00 0.00 1.90
263 264 7.169982 TCAAATTTCAAATAAAACCGCGACAAT 59.830 29.630 8.23 0.00 0.00 2.71
264 265 6.475727 TCAAATTTCAAATAAAACCGCGACAA 59.524 30.769 8.23 0.00 0.00 3.18
265 266 5.977725 TCAAATTTCAAATAAAACCGCGACA 59.022 32.000 8.23 0.00 0.00 4.35
266 267 6.441099 TCAAATTTCAAATAAAACCGCGAC 57.559 33.333 8.23 0.00 0.00 5.19
267 268 6.697892 AGTTCAAATTTCAAATAAAACCGCGA 59.302 30.769 8.23 0.00 0.00 5.87
268 269 6.872608 AGTTCAAATTTCAAATAAAACCGCG 58.127 32.000 0.00 0.00 0.00 6.46
276 277 8.756864 GCGTGGTTTTAGTTCAAATTTCAAATA 58.243 29.630 0.00 0.00 0.00 1.40
277 278 7.254624 GGCGTGGTTTTAGTTCAAATTTCAAAT 60.255 33.333 0.00 0.00 0.00 2.32
278 279 6.036191 GGCGTGGTTTTAGTTCAAATTTCAAA 59.964 34.615 0.00 0.00 0.00 2.69
279 280 5.520649 GGCGTGGTTTTAGTTCAAATTTCAA 59.479 36.000 0.00 0.00 0.00 2.69
280 281 5.044558 GGCGTGGTTTTAGTTCAAATTTCA 58.955 37.500 0.00 0.00 0.00 2.69
281 282 5.044558 TGGCGTGGTTTTAGTTCAAATTTC 58.955 37.500 0.00 0.00 0.00 2.17
282 283 5.012328 TGGCGTGGTTTTAGTTCAAATTT 57.988 34.783 0.00 0.00 0.00 1.82
283 284 4.657436 TGGCGTGGTTTTAGTTCAAATT 57.343 36.364 0.00 0.00 0.00 1.82
284 285 4.657436 TTGGCGTGGTTTTAGTTCAAAT 57.343 36.364 0.00 0.00 0.00 2.32
285 286 4.657436 ATTGGCGTGGTTTTAGTTCAAA 57.343 36.364 0.00 0.00 0.00 2.69
286 287 5.769484 TTATTGGCGTGGTTTTAGTTCAA 57.231 34.783 0.00 0.00 0.00 2.69
287 288 5.968528 ATTATTGGCGTGGTTTTAGTTCA 57.031 34.783 0.00 0.00 0.00 3.18
288 289 7.434013 CCATAATTATTGGCGTGGTTTTAGTTC 59.566 37.037 0.00 0.00 0.00 3.01
289 290 7.122948 TCCATAATTATTGGCGTGGTTTTAGTT 59.877 33.333 0.00 0.00 34.06 2.24
290 291 6.603997 TCCATAATTATTGGCGTGGTTTTAGT 59.396 34.615 0.00 0.00 34.06 2.24
291 292 7.033530 TCCATAATTATTGGCGTGGTTTTAG 57.966 36.000 0.00 0.00 34.06 1.85
292 293 7.406031 TTCCATAATTATTGGCGTGGTTTTA 57.594 32.000 0.00 0.00 34.06 1.52
293 294 5.923733 TCCATAATTATTGGCGTGGTTTT 57.076 34.783 0.00 0.00 34.06 2.43
294 295 5.923733 TTCCATAATTATTGGCGTGGTTT 57.076 34.783 0.00 0.00 34.06 3.27
295 296 5.221422 CCATTCCATAATTATTGGCGTGGTT 60.221 40.000 17.46 3.33 35.49 3.67
296 297 4.280677 CCATTCCATAATTATTGGCGTGGT 59.719 41.667 17.46 0.00 35.49 4.16
297 298 4.522405 TCCATTCCATAATTATTGGCGTGG 59.478 41.667 18.44 18.44 38.65 4.94
298 299 5.335897 CCTCCATTCCATAATTATTGGCGTG 60.336 44.000 8.49 8.87 34.06 5.34
299 300 4.766891 CCTCCATTCCATAATTATTGGCGT 59.233 41.667 8.49 0.00 34.06 5.68
300 301 5.009631 TCCTCCATTCCATAATTATTGGCG 58.990 41.667 8.49 3.79 34.06 5.69
301 302 6.494835 ACTTCCTCCATTCCATAATTATTGGC 59.505 38.462 8.49 0.00 34.06 4.52
302 303 9.236006 CTACTTCCTCCATTCCATAATTATTGG 57.764 37.037 7.37 7.37 35.45 3.16
303 304 9.799106 ACTACTTCCTCCATTCCATAATTATTG 57.201 33.333 0.00 0.00 0.00 1.90
306 307 9.670442 AGTACTACTTCCTCCATTCCATAATTA 57.330 33.333 0.00 0.00 0.00 1.40
307 308 8.568617 AGTACTACTTCCTCCATTCCATAATT 57.431 34.615 0.00 0.00 0.00 1.40
308 309 9.091220 GTAGTACTACTTCCTCCATTCCATAAT 57.909 37.037 23.17 0.00 33.45 1.28
309 310 7.508296 GGTAGTACTACTTCCTCCATTCCATAA 59.492 40.741 27.71 0.00 33.44 1.90
310 311 7.008941 GGTAGTACTACTTCCTCCATTCCATA 58.991 42.308 27.71 0.00 33.44 2.74
311 312 5.839606 GGTAGTACTACTTCCTCCATTCCAT 59.160 44.000 27.71 0.00 33.44 3.41
312 313 5.043582 AGGTAGTACTACTTCCTCCATTCCA 60.044 44.000 27.71 0.00 41.42 3.53
313 314 5.456779 AGGTAGTACTACTTCCTCCATTCC 58.543 45.833 27.71 10.52 41.42 3.01
322 323 4.151121 GGGGATGGAGGTAGTACTACTTC 58.849 52.174 28.31 28.31 40.24 3.01
323 324 3.534747 TGGGGATGGAGGTAGTACTACTT 59.465 47.826 27.71 22.74 36.36 2.24
324 325 3.136896 TGGGGATGGAGGTAGTACTACT 58.863 50.000 27.71 16.29 36.36 2.57
325 326 3.607490 TGGGGATGGAGGTAGTACTAC 57.393 52.381 22.53 22.53 35.40 2.73
326 327 3.534747 ACTTGGGGATGGAGGTAGTACTA 59.465 47.826 0.00 0.00 0.00 1.82
327 328 2.318207 ACTTGGGGATGGAGGTAGTACT 59.682 50.000 0.00 0.00 0.00 2.73
328 329 2.760581 ACTTGGGGATGGAGGTAGTAC 58.239 52.381 0.00 0.00 0.00 2.73
329 330 4.015918 ACTTACTTGGGGATGGAGGTAGTA 60.016 45.833 0.00 0.00 0.00 1.82
330 331 3.246387 ACTTACTTGGGGATGGAGGTAGT 60.246 47.826 0.00 0.00 0.00 2.73
331 332 3.134804 CACTTACTTGGGGATGGAGGTAG 59.865 52.174 0.00 0.00 0.00 3.18
332 333 3.112263 CACTTACTTGGGGATGGAGGTA 58.888 50.000 0.00 0.00 0.00 3.08
333 334 1.916181 CACTTACTTGGGGATGGAGGT 59.084 52.381 0.00 0.00 0.00 3.85
334 335 1.916181 ACACTTACTTGGGGATGGAGG 59.084 52.381 0.00 0.00 0.00 4.30
335 336 2.418746 CGACACTTACTTGGGGATGGAG 60.419 54.545 0.00 0.00 0.00 3.86
336 337 1.553248 CGACACTTACTTGGGGATGGA 59.447 52.381 0.00 0.00 0.00 3.41
337 338 2.012051 GCGACACTTACTTGGGGATGG 61.012 57.143 0.00 0.00 0.00 3.51
338 339 1.066143 AGCGACACTTACTTGGGGATG 60.066 52.381 0.00 0.00 0.00 3.51
339 340 1.066143 CAGCGACACTTACTTGGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
340 341 0.320374 CAGCGACACTTACTTGGGGA 59.680 55.000 0.00 0.00 0.00 4.81
341 342 0.320374 TCAGCGACACTTACTTGGGG 59.680 55.000 0.00 0.00 0.00 4.96
342 343 2.386661 ATCAGCGACACTTACTTGGG 57.613 50.000 0.00 0.00 0.00 4.12
343 344 4.929808 ACTAAATCAGCGACACTTACTTGG 59.070 41.667 0.00 0.00 0.00 3.61
344 345 6.584942 TGTACTAAATCAGCGACACTTACTTG 59.415 38.462 0.00 0.00 0.00 3.16
345 346 6.684686 TGTACTAAATCAGCGACACTTACTT 58.315 36.000 0.00 0.00 0.00 2.24
346 347 6.263516 TGTACTAAATCAGCGACACTTACT 57.736 37.500 0.00 0.00 0.00 2.24
347 348 6.939551 TTGTACTAAATCAGCGACACTTAC 57.060 37.500 0.00 0.00 0.00 2.34
348 349 7.115805 CACTTTGTACTAAATCAGCGACACTTA 59.884 37.037 0.00 0.00 0.00 2.24
349 350 5.989777 ACTTTGTACTAAATCAGCGACACTT 59.010 36.000 0.00 0.00 0.00 3.16
350 351 5.405571 CACTTTGTACTAAATCAGCGACACT 59.594 40.000 0.00 0.00 0.00 3.55
351 352 5.609088 CACTTTGTACTAAATCAGCGACAC 58.391 41.667 0.00 0.00 0.00 3.67
352 353 4.151689 GCACTTTGTACTAAATCAGCGACA 59.848 41.667 0.00 0.00 0.00 4.35
353 354 4.151689 TGCACTTTGTACTAAATCAGCGAC 59.848 41.667 0.00 0.00 0.00 5.19
354 355 4.311606 TGCACTTTGTACTAAATCAGCGA 58.688 39.130 0.00 0.00 0.00 4.93
355 356 4.661993 TGCACTTTGTACTAAATCAGCG 57.338 40.909 0.00 0.00 0.00 5.18
356 357 7.594758 TGAAAATGCACTTTGTACTAAATCAGC 59.405 33.333 0.00 0.00 0.00 4.26
357 358 9.630098 ATGAAAATGCACTTTGTACTAAATCAG 57.370 29.630 0.00 0.00 0.00 2.90
358 359 9.979578 AATGAAAATGCACTTTGTACTAAATCA 57.020 25.926 0.00 0.00 0.00 2.57
364 365 9.463443 GAAACTAATGAAAATGCACTTTGTACT 57.537 29.630 0.00 0.00 0.00 2.73
365 366 9.463443 AGAAACTAATGAAAATGCACTTTGTAC 57.537 29.630 0.00 0.00 0.00 2.90
367 368 8.947055 AAGAAACTAATGAAAATGCACTTTGT 57.053 26.923 0.00 0.00 0.00 2.83
414 415 5.653507 TGAATTATTTTGCTGGCAGATCAC 58.346 37.500 20.86 0.00 0.00 3.06
488 489 5.766150 AGATCGTTACAAGAGGAGAGATG 57.234 43.478 0.00 0.00 0.00 2.90
509 510 2.890808 TAAGCCCGAGTGCTGATTAG 57.109 50.000 0.00 0.00 41.80 1.73
517 518 3.074412 AGTGAAACAATAAGCCCGAGTG 58.926 45.455 0.00 0.00 41.43 3.51
521 522 4.094442 GGAAGTAGTGAAACAATAAGCCCG 59.906 45.833 0.00 0.00 41.43 6.13
549 550 7.832503 ATTGTCATAAGCCTTTTGTTTATGC 57.167 32.000 4.50 0.00 35.67 3.14
591 592 7.663905 TGACACAACAAAGTAATACTTAGCCAT 59.336 33.333 6.04 0.00 37.47 4.40
643 695 6.093633 ACAAAAGGCTTATCGTATCTTTGGTC 59.906 38.462 0.00 0.00 28.68 4.02
676 728 9.783081 AATGCATGATTTTCTTTCCTTTTTAGT 57.217 25.926 0.00 0.00 0.00 2.24
718 770 4.738541 GCAGTGATGGCCCTGATTTATTTG 60.739 45.833 10.58 0.00 0.00 2.32
727 779 0.968901 AACATGCAGTGATGGCCCTG 60.969 55.000 0.00 0.35 0.00 4.45
728 780 0.968901 CAACATGCAGTGATGGCCCT 60.969 55.000 0.00 0.00 0.00 5.19
729 781 0.966875 TCAACATGCAGTGATGGCCC 60.967 55.000 0.00 0.00 31.98 5.80
738 790 6.688385 CGTATCTTTGGTTAATCAACATGCAG 59.312 38.462 0.00 0.00 36.29 4.41
806 858 9.019764 CGGGCATTTATGAACATAACTTAAAAG 57.980 33.333 6.73 0.00 33.40 2.27
809 861 7.415765 CCACGGGCATTTATGAACATAACTTAA 60.416 37.037 6.73 0.00 33.40 1.85
813 868 4.097286 ACCACGGGCATTTATGAACATAAC 59.903 41.667 6.73 0.00 33.40 1.89
830 885 1.298859 GCTGGCTCTTTACACCACGG 61.299 60.000 0.00 0.00 0.00 4.94
1015 1087 1.963985 AGGGTGAGGAAGAAGAGCAT 58.036 50.000 0.00 0.00 0.00 3.79
1104 1179 4.635765 CCAACACAATAGTGGTAGGACATG 59.364 45.833 0.00 0.00 45.94 3.21
1137 1212 2.594592 GCACCTGTTGGTTCGGCT 60.595 61.111 0.00 0.00 46.05 5.52
1189 1264 0.470766 TGAACGGTTAGGTTGGCAGT 59.529 50.000 0.00 0.00 0.00 4.40
1305 1380 1.960417 TGTTCAAGTCATCAACGGCA 58.040 45.000 0.00 0.00 0.00 5.69
1321 1396 2.808543 GTTCAGCATCTCGTCCTTTGTT 59.191 45.455 0.00 0.00 0.00 2.83
1599 1690 6.252655 ACGACTCATGTTTAAACAAGCAAAAC 59.747 34.615 23.97 11.59 43.03 2.43
1623 1714 3.313526 CAGTAGGCCAACATATTGCAGAC 59.686 47.826 5.01 0.00 34.17 3.51
1711 1802 8.331730 TCACTGCTAATGAATCCATGATTATG 57.668 34.615 0.00 0.00 31.89 1.90
1739 1831 1.982958 TCTGGGGGACAAGAGTAAACC 59.017 52.381 0.00 0.00 0.00 3.27
1754 1846 1.012086 CGTGCTCATCATGTTCTGGG 58.988 55.000 0.00 0.00 0.00 4.45
1758 1850 2.838386 AATGCGTGCTCATCATGTTC 57.162 45.000 0.00 0.00 34.19 3.18
1775 1867 8.980596 TGAATTTGTATATTCAGGGCAAGAAAT 58.019 29.630 0.00 0.00 39.07 2.17
1904 1996 5.125100 TCCAATCAATGCAAACAGAAGTC 57.875 39.130 0.00 0.00 0.00 3.01
2042 2134 4.202441 GACAGTTGGGCATAGTGATCATT 58.798 43.478 0.00 0.00 0.00 2.57
2068 2160 1.375908 GACAGATTGCAGGCCACGA 60.376 57.895 5.01 0.00 0.00 4.35
2092 2184 1.277580 CCTCCAGGTTCCAGCCATCT 61.278 60.000 0.00 0.00 0.00 2.90
2143 2235 4.282449 TGAAATCGAGGGAAACTAGTGACA 59.718 41.667 0.00 0.00 0.00 3.58
2186 2280 1.109323 AACAACAGCACTGGAAGCCC 61.109 55.000 2.21 0.00 37.60 5.19
2236 2335 1.359848 AACATGGCGAACGAGTGATC 58.640 50.000 0.00 0.00 0.00 2.92
2315 2414 7.880160 TTATGAAATGGAGGGATTACAGTTG 57.120 36.000 0.00 0.00 25.39 3.16
2370 2474 7.033530 TCCATAATTATTGGCGTGGTTTTAG 57.966 36.000 0.00 0.00 34.06 1.85
2413 2517 2.418976 GACACTTATTTTGGGACGGAGC 59.581 50.000 0.00 0.00 0.00 4.70
2416 2520 1.129811 GCGACACTTATTTTGGGACGG 59.870 52.381 0.00 0.00 0.00 4.79
2424 2528 8.542497 TTGTACTAAATCAGCGACACTTATTT 57.458 30.769 0.00 0.00 36.43 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.