Multiple sequence alignment - TraesCS5D01G534500

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G534500 chr5D 100.000 5711 0 0 1 5711 548630223 548624513 0.000000e+00 10547.0
1 TraesCS5D01G534500 chr5D 100.000 1312 0 0 5991 7302 548624233 548622922 0.000000e+00 2423.0
2 TraesCS5D01G534500 chr5D 85.100 651 59 16 1 647 114628086 114627470 1.340000e-176 630.0
3 TraesCS5D01G534500 chr5D 84.579 629 69 18 5 622 391983431 391982820 3.770000e-167 599.0
4 TraesCS5D01G534500 chr5D 87.841 403 35 7 248 647 486900302 486899911 1.860000e-125 460.0
5 TraesCS5D01G534500 chr5D 87.789 303 31 4 683 979 486910510 486910208 4.190000e-92 350.0
6 TraesCS5D01G534500 chr5D 87.296 307 29 7 683 982 12992057 12991754 7.010000e-90 342.0
7 TraesCS5D01G534500 chr5D 86.207 319 37 6 670 981 486899932 486899614 9.070000e-89 339.0
8 TraesCS5D01G534500 chr5D 96.774 62 2 0 1319 1380 148305013 148305074 3.600000e-18 104.0
9 TraesCS5D01G534500 chr5D 96.774 62 2 0 1319 1380 503219017 503219078 3.600000e-18 104.0
10 TraesCS5D01G534500 chr5D 93.443 61 4 0 2563 2623 437601594 437601534 2.810000e-14 91.6
11 TraesCS5D01G534500 chr5D 82.667 75 5 3 6445 6511 538176611 538176537 7.910000e-05 60.2
12 TraesCS5D01G534500 chr5D 92.683 41 2 1 6435 6475 228069679 228069718 2.850000e-04 58.4
13 TraesCS5D01G534500 chr5D 92.683 41 2 1 6435 6475 232594872 232594911 2.850000e-04 58.4
14 TraesCS5D01G534500 chr5D 89.362 47 1 3 6429 6475 500118281 500118323 1.000000e-03 56.5
15 TraesCS5D01G534500 chr5B 92.435 1269 70 12 683 1939 692785898 692784644 0.000000e+00 1788.0
16 TraesCS5D01G534500 chr5B 93.323 674 27 6 1938 2596 692784562 692783892 0.000000e+00 979.0
17 TraesCS5D01G534500 chr5B 91.064 705 40 12 4813 5499 692772872 692772173 0.000000e+00 931.0
18 TraesCS5D01G534500 chr5B 92.790 638 32 3 2628 3265 513852856 513853479 0.000000e+00 911.0
19 TraesCS5D01G534500 chr5B 88.957 652 48 13 1 647 692786522 692785890 0.000000e+00 784.0
20 TraesCS5D01G534500 chr5B 94.375 480 25 1 3587 4066 692783775 692783298 0.000000e+00 736.0
21 TraesCS5D01G534500 chr5B 89.041 511 37 11 4631 5125 692773376 692772869 3.740000e-172 616.0
22 TraesCS5D01G534500 chr5B 87.243 486 26 12 6000 6454 692771950 692771470 8.390000e-144 521.0
23 TraesCS5D01G534500 chr5B 93.953 215 13 0 3367 3581 513853481 513853695 7.060000e-85 326.0
24 TraesCS5D01G534500 chr5B 85.449 323 34 8 670 982 12859930 12859611 2.540000e-84 324.0
25 TraesCS5D01G534500 chr5B 94.313 211 12 0 4421 4631 692776135 692775925 2.540000e-84 324.0
26 TraesCS5D01G534500 chr5B 81.977 344 38 13 6509 6830 692771478 692771137 3.360000e-68 270.0
27 TraesCS5D01G534500 chr5B 91.608 143 9 3 7160 7302 692757344 692757205 2.080000e-45 195.0
28 TraesCS5D01G534500 chr5B 83.117 231 16 10 6940 7161 692758510 692758294 9.670000e-44 189.0
29 TraesCS5D01G534500 chr5B 94.186 86 5 0 3289 3374 659412213 659412128 1.650000e-26 132.0
30 TraesCS5D01G534500 chr5B 95.238 63 3 0 1318 1380 559429838 559429776 4.660000e-17 100.0
31 TraesCS5D01G534500 chr5B 93.443 61 4 0 2563 2623 384559395 384559455 2.810000e-14 91.6
32 TraesCS5D01G534500 chr5B 97.500 40 1 0 3583 3622 73990198 73990159 1.310000e-07 69.4
33 TraesCS5D01G534500 chr5B 93.617 47 0 3 3583 3627 624198332 624198287 4.730000e-07 67.6
34 TraesCS5D01G534500 chr5B 93.617 47 0 3 3583 3627 627798730 627798685 4.730000e-07 67.6
35 TraesCS5D01G534500 chr5B 95.238 42 1 1 3586 3626 249579786 249579827 1.700000e-06 65.8
36 TraesCS5D01G534500 chr5B 92.683 41 1 2 6716 6754 652568539 652568499 2.850000e-04 58.4
37 TraesCS5D01G534500 chr5B 100.000 30 0 0 6717 6746 449753722 449753693 1.000000e-03 56.5
38 TraesCS5D01G534500 chr4D 98.328 957 14 2 2628 3584 40819674 40820628 0.000000e+00 1677.0
39 TraesCS5D01G534500 chr4D 98.411 881 13 1 2702 3582 127560365 127559486 0.000000e+00 1548.0
40 TraesCS5D01G534500 chr4D 100.000 33 0 0 6445 6477 16412311 16412343 2.200000e-05 62.1
41 TraesCS5D01G534500 chr4D 97.222 36 1 0 6440 6475 508228234 508228269 2.200000e-05 62.1
42 TraesCS5D01G534500 chr4D 90.909 44 3 1 6432 6475 455811159 455811201 2.850000e-04 58.4
43 TraesCS5D01G534500 chr4D 90.244 41 4 0 6435 6475 15786185 15786225 4.000000e-03 54.7
44 TraesCS5D01G534500 chr2B 90.573 1135 89 9 3608 4739 182357949 182359068 0.000000e+00 1487.0
45 TraesCS5D01G534500 chr2B 89.960 1006 75 14 1384 2370 182356823 182357821 0.000000e+00 1275.0
46 TraesCS5D01G534500 chr2B 90.017 601 42 10 4749 5335 182359600 182360196 0.000000e+00 761.0
47 TraesCS5D01G534500 chr2B 89.394 330 24 5 5382 5711 182360207 182360525 8.820000e-109 405.0
48 TraesCS5D01G534500 chr2B 87.861 346 29 9 979 1321 182356480 182356815 1.910000e-105 394.0
49 TraesCS5D01G534500 chr2B 81.481 243 27 9 6196 6432 182360829 182361059 4.500000e-42 183.0
50 TraesCS5D01G534500 chr2B 85.714 161 15 2 5992 6152 182360679 182360831 5.860000e-36 163.0
51 TraesCS5D01G534500 chr2B 89.706 68 5 2 2558 2623 55859812 55859745 1.310000e-12 86.1
52 TraesCS5D01G534500 chr2B 85.965 57 7 1 6422 6477 460177696 460177752 7.910000e-05 60.2
53 TraesCS5D01G534500 chr2B 83.333 72 5 3 6445 6511 766079473 766079404 7.910000e-05 60.2
54 TraesCS5D01G534500 chr2D 90.088 1019 67 12 1378 2368 128448746 128449758 0.000000e+00 1291.0
55 TraesCS5D01G534500 chr2D 87.876 998 69 15 4737 5711 128456289 128457257 0.000000e+00 1125.0
56 TraesCS5D01G534500 chr2D 89.110 652 52 9 4092 4739 128455597 128456233 0.000000e+00 793.0
57 TraesCS5D01G534500 chr2D 90.055 362 31 3 3732 4093 128455147 128455503 1.430000e-126 464.0
58 TraesCS5D01G534500 chr2D 87.172 343 32 7 979 1318 128448412 128448745 5.350000e-101 379.0
59 TraesCS5D01G534500 chr2D 81.893 243 26 9 6196 6432 128457541 128457771 9.670000e-44 189.0
60 TraesCS5D01G534500 chr2D 91.473 129 10 1 3608 3736 128449891 128450018 7.530000e-40 176.0
61 TraesCS5D01G534500 chr2D 81.366 161 10 10 5992 6152 128457403 128457543 5.990000e-21 113.0
62 TraesCS5D01G534500 chr2D 96.429 56 2 0 2568 2623 13622543 13622488 7.800000e-15 93.5
63 TraesCS5D01G534500 chr2D 91.429 70 2 3 2558 2623 422331537 422331606 7.800000e-15 93.5
64 TraesCS5D01G534500 chr2D 97.059 34 1 0 3255 3288 609490967 609491000 2.850000e-04 58.4
65 TraesCS5D01G534500 chr2A 89.585 989 72 14 4737 5711 135475709 135476680 0.000000e+00 1227.0
66 TraesCS5D01G534500 chr2A 90.226 931 67 13 1458 2370 135473387 135474311 0.000000e+00 1194.0
67 TraesCS5D01G534500 chr2A 95.455 528 22 2 3056 3582 48552533 48553059 0.000000e+00 841.0
68 TraesCS5D01G534500 chr2A 89.692 650 45 7 4092 4739 135475021 135475650 0.000000e+00 809.0
69 TraesCS5D01G534500 chr2A 97.712 437 9 1 2627 3062 48551794 48552230 0.000000e+00 750.0
70 TraesCS5D01G534500 chr2A 90.574 488 42 4 3608 4093 135474442 135474927 1.720000e-180 643.0
71 TraesCS5D01G534500 chr2A 86.982 338 33 6 983 1318 135472815 135473143 3.220000e-98 370.0
72 TraesCS5D01G534500 chr2A 86.792 318 29 11 670 981 691230619 691230309 7.010000e-90 342.0
73 TraesCS5D01G534500 chr2A 91.304 138 9 3 3445 3581 769557990 769558125 1.250000e-42 185.0
74 TraesCS5D01G534500 chr2A 81.070 243 28 9 6196 6432 135476954 135477184 2.090000e-40 178.0
75 TraesCS5D01G534500 chr2A 83.851 161 16 3 5992 6152 135476806 135476956 2.120000e-30 145.0
76 TraesCS5D01G534500 chr3A 96.388 526 17 1 3057 3582 13512095 13512618 0.000000e+00 865.0
77 TraesCS5D01G534500 chr3A 96.560 436 13 2 2627 3062 13511357 13511790 0.000000e+00 721.0
78 TraesCS5D01G534500 chr6A 88.290 649 58 9 1 647 579956354 579955722 0.000000e+00 761.0
79 TraesCS5D01G534500 chr6A 84.091 660 73 18 1 647 535995855 535995215 6.260000e-170 608.0
80 TraesCS5D01G534500 chr6A 94.872 39 0 2 6436 6473 4694785 4694748 7.910000e-05 60.2
81 TraesCS5D01G534500 chr6A 90.698 43 2 2 6437 6477 569482682 569482724 1.000000e-03 56.5
82 TraesCS5D01G534500 chr6A 100.000 28 0 0 6448 6475 83436942 83436915 1.300000e-02 52.8
83 TraesCS5D01G534500 chr1B 92.925 523 28 6 2628 3148 648681013 648680498 0.000000e+00 752.0
84 TraesCS5D01G534500 chr1B 86.242 596 61 13 34 625 551720727 551721305 1.730000e-175 627.0
85 TraesCS5D01G534500 chr1B 89.691 97 8 2 3289 3385 584878041 584877947 9.950000e-24 122.0
86 TraesCS5D01G534500 chr1B 87.500 48 6 0 6428 6475 252286747 252286794 1.000000e-03 56.5
87 TraesCS5D01G534500 chr6D 86.133 649 74 9 1 647 433769258 433768624 0.000000e+00 686.0
88 TraesCS5D01G534500 chr6D 83.459 665 72 19 1 647 389609246 389608602 1.060000e-162 584.0
89 TraesCS5D01G534500 chr6D 100.000 33 0 0 6445 6477 134695797 134695765 2.200000e-05 62.1
90 TraesCS5D01G534500 chr6D 94.737 38 0 2 6439 6475 41532060 41532096 2.850000e-04 58.4
91 TraesCS5D01G534500 chr6D 86.207 58 2 6 6419 6475 68509718 68509770 2.850000e-04 58.4
92 TraesCS5D01G534500 chr6D 100.000 31 0 0 6447 6477 215340803 215340833 2.850000e-04 58.4
93 TraesCS5D01G534500 chr6D 97.059 34 1 0 6441 6474 262513888 262513921 2.850000e-04 58.4
94 TraesCS5D01G534500 chr6D 94.595 37 2 0 6441 6477 287026509 287026473 2.850000e-04 58.4
95 TraesCS5D01G534500 chr6D 97.059 34 1 0 6442 6475 309072498 309072531 2.850000e-04 58.4
96 TraesCS5D01G534500 chr6D 92.500 40 0 3 6436 6475 334072629 334072665 4.000000e-03 54.7
97 TraesCS5D01G534500 chr1D 86.598 582 58 10 32 607 452340982 452341549 6.220000e-175 625.0
98 TraesCS5D01G534500 chr1D 87.421 318 31 6 670 981 110519547 110519233 2.510000e-94 357.0
99 TraesCS5D01G534500 chr1D 91.154 260 18 4 391 647 110519783 110519526 1.510000e-91 348.0
100 TraesCS5D01G534500 chr1D 96.364 55 2 0 2569 2623 160674652 160674706 2.810000e-14 91.6
101 TraesCS5D01G534500 chr1D 97.143 35 1 0 6443 6477 430477615 430477649 7.910000e-05 60.2
102 TraesCS5D01G534500 chr1D 92.500 40 1 2 6436 6473 415405156 415405117 1.000000e-03 56.5
103 TraesCS5D01G534500 chr1D 90.909 44 1 2 6435 6475 455143519 455143476 1.000000e-03 56.5
104 TraesCS5D01G534500 chr1D 90.698 43 3 1 6447 6489 481330449 481330408 1.000000e-03 56.5
105 TraesCS5D01G534500 chr6B 87.386 547 51 8 1 543 656034300 656033768 4.840000e-171 612.0
106 TraesCS5D01G534500 chr6B 90.083 363 18 4 2905 3267 7555482 7555826 8.640000e-124 455.0
107 TraesCS5D01G534500 chr6B 87.952 332 37 3 32 360 505248005 505248336 8.880000e-104 388.0
108 TraesCS5D01G534500 chr6B 88.889 306 27 6 683 981 656033641 656033336 3.220000e-98 370.0
109 TraesCS5D01G534500 chr6B 92.237 219 10 1 3365 3583 7555824 7556035 3.310000e-78 303.0
110 TraesCS5D01G534500 chr6B 98.113 53 1 0 2571 2623 610260266 610260214 7.800000e-15 93.5
111 TraesCS5D01G534500 chr6B 100.000 36 0 0 6442 6477 542559239 542559204 4.730000e-07 67.6
112 TraesCS5D01G534500 chr6B 95.000 40 0 2 6717 6754 471183798 471183759 2.200000e-05 62.1
113 TraesCS5D01G534500 chr6B 100.000 30 0 0 6717 6746 707799630 707799659 1.000000e-03 56.5
114 TraesCS5D01G534500 chr6B 100.000 28 0 0 6717 6744 145045397 145045370 1.300000e-02 52.8
115 TraesCS5D01G534500 chr4A 83.455 683 63 27 4675 5347 619442177 619441535 2.270000e-164 590.0
116 TraesCS5D01G534500 chr4A 83.309 683 64 27 4675 5347 619507239 619506597 1.060000e-162 584.0
117 TraesCS5D01G534500 chr4A 83.163 683 65 22 4675 5347 619578589 619577947 4.910000e-161 579.0
118 TraesCS5D01G534500 chr4A 87.069 464 45 8 5992 6454 619505600 619505151 1.820000e-140 510.0
119 TraesCS5D01G534500 chr4A 86.638 464 47 8 5992 6454 619577045 619576596 3.930000e-137 499.0
120 TraesCS5D01G534500 chr4A 86.710 459 47 6 5992 6450 619440877 619440433 1.410000e-136 497.0
121 TraesCS5D01G534500 chr4A 88.747 391 24 10 6905 7287 619575179 619574801 1.860000e-125 460.0
122 TraesCS5D01G534500 chr4A 82.709 561 53 22 4796 5347 619445926 619445401 6.680000e-125 459.0
123 TraesCS5D01G534500 chr4A 91.573 178 11 3 7110 7287 619438896 619438723 7.320000e-60 243.0
124 TraesCS5D01G534500 chr4A 91.573 178 11 3 7110 7287 619503619 619503446 7.320000e-60 243.0
125 TraesCS5D01G534500 chr4A 85.590 229 20 6 6509 6733 619505159 619504940 2.050000e-55 228.0
126 TraesCS5D01G534500 chr4A 85.590 229 20 6 6509 6733 619576604 619576385 2.050000e-55 228.0
127 TraesCS5D01G534500 chr4A 85.153 229 21 6 6509 6733 619440436 619440217 9.540000e-54 222.0
128 TraesCS5D01G534500 chr4A 91.011 89 4 3 6905 6989 619439012 619438924 4.630000e-22 117.0
129 TraesCS5D01G534500 chr4A 91.011 89 4 3 6905 6989 619503735 619503647 4.630000e-22 117.0
130 TraesCS5D01G534500 chr4A 96.774 62 2 0 1319 1380 309515929 309515990 3.600000e-18 104.0
131 TraesCS5D01G534500 chr4A 97.917 48 1 0 5992 6039 619444807 619444760 4.690000e-12 84.2
132 TraesCS5D01G534500 chr4A 86.885 61 1 7 6418 6475 5972868 5972924 2.200000e-05 62.1
133 TraesCS5D01G534500 chr4A 86.792 53 5 2 6440 6491 165711695 165711746 2.850000e-04 58.4
134 TraesCS5D01G534500 chr4A 81.333 75 6 5 6443 6509 725888862 725888936 4.000000e-03 54.7
135 TraesCS5D01G534500 chr7D 84.405 622 56 14 32 647 591455517 591454931 2.290000e-159 573.0
136 TraesCS5D01G534500 chr7D 86.834 319 34 6 670 981 591454952 591454635 4.190000e-92 350.0
137 TraesCS5D01G534500 chr7D 95.349 43 0 2 6435 6475 82866862 82866904 4.730000e-07 67.6
138 TraesCS5D01G534500 chr7D 97.297 37 1 0 6441 6477 60339118 60339082 6.120000e-06 63.9
139 TraesCS5D01G534500 chr7D 100.000 30 0 0 6717 6746 485101377 485101406 1.000000e-03 56.5
140 TraesCS5D01G534500 chr7D 81.690 71 6 4 6446 6509 49192224 49192294 1.300000e-02 52.8
141 TraesCS5D01G534500 chr7B 84.058 621 63 14 33 647 26739224 26739814 3.820000e-157 566.0
142 TraesCS5D01G534500 chr7B 89.583 96 8 2 3271 3364 687105326 687105421 3.580000e-23 121.0
143 TraesCS5D01G534500 chr7B 98.113 53 1 0 2571 2623 226902802 226902854 7.800000e-15 93.5
144 TraesCS5D01G534500 chr7B 100.000 31 0 0 6447 6477 67223384 67223354 2.850000e-04 58.4
145 TraesCS5D01G534500 chr7B 100.000 30 0 0 6717 6746 413571183 413571212 1.000000e-03 56.5
146 TraesCS5D01G534500 chr1A 85.333 450 47 14 1 438 115368650 115368208 1.450000e-121 448.0
147 TraesCS5D01G534500 chr1A 95.872 218 9 0 3365 3582 10844192 10844409 3.240000e-93 353.0
148 TraesCS5D01G534500 chr1A 95.872 218 9 0 3365 3582 10899147 10899364 3.240000e-93 353.0
149 TraesCS5D01G534500 chr1A 96.985 199 4 1 2644 2842 10898700 10898896 4.220000e-87 333.0
150 TraesCS5D01G534500 chr1A 89.474 266 17 2 3002 3267 10843940 10844194 7.060000e-85 326.0
151 TraesCS5D01G534500 chr1A 89.474 266 17 2 3002 3267 10898895 10899149 7.060000e-85 326.0
152 TraesCS5D01G534500 chr1A 95.980 199 6 1 2644 2842 10843745 10843941 9.140000e-84 322.0
153 TraesCS5D01G534500 chr1A 92.857 42 2 1 6436 6477 531229972 531230012 7.910000e-05 60.2
154 TraesCS5D01G534500 chr4B 82.883 333 37 14 2628 2952 75037341 75037021 1.550000e-71 281.0
155 TraesCS5D01G534500 chr4B 96.429 56 2 0 2568 2623 16799144 16799199 7.800000e-15 93.5
156 TraesCS5D01G534500 chr4B 94.737 38 2 0 6438 6475 23660774 23660811 7.910000e-05 60.2
157 TraesCS5D01G534500 chr5A 95.122 82 4 0 3286 3367 464132767 464132848 5.950000e-26 130.0
158 TraesCS5D01G534500 chr5A 92.308 39 1 1 6718 6754 311968960 311968922 4.000000e-03 54.7
159 TraesCS5D01G534500 chr7A 93.023 86 6 0 3286 3371 509167408 509167323 7.690000e-25 126.0
160 TraesCS5D01G534500 chr7A 91.667 48 3 1 3583 3629 155147928 155147881 1.700000e-06 65.8
161 TraesCS5D01G534500 chr7A 83.333 66 9 2 6448 6511 135963971 135963906 7.910000e-05 60.2
162 TraesCS5D01G534500 chrUn 96.774 62 2 0 1319 1380 389445835 389445896 3.600000e-18 104.0
163 TraesCS5D01G534500 chrUn 95.161 62 3 0 1319 1380 93408833 93408772 1.680000e-16 99.0
164 TraesCS5D01G534500 chrUn 95.161 62 3 0 1319 1380 346595695 346595634 1.680000e-16 99.0
165 TraesCS5D01G534500 chrUn 90.196 51 4 1 3583 3632 135090774 135090824 1.700000e-06 65.8
166 TraesCS5D01G534500 chrUn 90.196 51 4 1 3583 3632 152687630 152687680 1.700000e-06 65.8
167 TraesCS5D01G534500 chrUn 88.000 50 4 2 6427 6475 19086552 19086504 2.850000e-04 58.4
168 TraesCS5D01G534500 chrUn 94.595 37 2 0 6439 6475 31861201 31861237 2.850000e-04 58.4
169 TraesCS5D01G534500 chrUn 100.000 31 0 0 6445 6475 95984989 95984959 2.850000e-04 58.4
170 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 83685304 83685275 1.000000e-03 56.5
171 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 91676006 91675977 1.000000e-03 56.5
172 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 184004382 184004353 1.000000e-03 56.5
173 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 191274137 191274166 1.000000e-03 56.5
174 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 208649054 208649083 1.000000e-03 56.5
175 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 226179886 226179915 1.000000e-03 56.5
176 TraesCS5D01G534500 chrUn 100.000 30 0 0 6448 6477 241641870 241641899 1.000000e-03 56.5
177 TraesCS5D01G534500 chrUn 100.000 30 0 0 6444 6473 267647702 267647673 1.000000e-03 56.5
178 TraesCS5D01G534500 chrUn 100.000 28 0 0 6446 6473 347112610 347112637 1.300000e-02 52.8
179 TraesCS5D01G534500 chrUn 88.636 44 3 2 6446 6487 352128662 352128619 1.300000e-02 52.8
180 TraesCS5D01G534500 chr3B 96.774 62 2 0 1319 1380 101911974 101912035 3.600000e-18 104.0
181 TraesCS5D01G534500 chr3D 97.436 39 1 0 643 681 613620780 613620742 4.730000e-07 67.6
182 TraesCS5D01G534500 chr3D 90.385 52 1 4 6426 6475 515964532 515964483 1.700000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G534500 chr5D 548622922 548630223 7301 True 6485.000000 10547 100.000000 1 7302 2 chr5D.!!$R8 7301
1 TraesCS5D01G534500 chr5D 114627470 114628086 616 True 630.000000 630 85.100000 1 647 1 chr5D.!!$R2 646
2 TraesCS5D01G534500 chr5D 391982820 391983431 611 True 599.000000 599 84.579000 5 622 1 chr5D.!!$R3 617
3 TraesCS5D01G534500 chr5D 486899614 486900302 688 True 399.500000 460 87.024000 248 981 2 chr5D.!!$R7 733
4 TraesCS5D01G534500 chr5B 692783298 692786522 3224 True 1071.750000 1788 92.272500 1 4066 4 chr5B.!!$R11 4065
5 TraesCS5D01G534500 chr5B 513852856 513853695 839 False 618.500000 911 93.371500 2628 3581 2 chr5B.!!$F3 953
6 TraesCS5D01G534500 chr5B 692771137 692776135 4998 True 532.400000 931 88.727600 4421 6830 5 chr5B.!!$R10 2409
7 TraesCS5D01G534500 chr4D 40819674 40820628 954 False 1677.000000 1677 98.328000 2628 3584 1 chr4D.!!$F3 956
8 TraesCS5D01G534500 chr4D 127559486 127560365 879 True 1548.000000 1548 98.411000 2702 3582 1 chr4D.!!$R1 880
9 TraesCS5D01G534500 chr2B 182356480 182361059 4579 False 666.857143 1487 87.857143 979 6432 7 chr2B.!!$F2 5453
10 TraesCS5D01G534500 chr2D 128448412 128450018 1606 False 615.333333 1291 89.577667 979 3736 3 chr2D.!!$F3 2757
11 TraesCS5D01G534500 chr2D 128455147 128457771 2624 False 536.800000 1125 86.060000 3732 6432 5 chr2D.!!$F4 2700
12 TraesCS5D01G534500 chr2A 48551794 48553059 1265 False 795.500000 841 96.583500 2627 3582 2 chr2A.!!$F2 955
13 TraesCS5D01G534500 chr2A 135472815 135477184 4369 False 652.285714 1227 87.425714 983 6432 7 chr2A.!!$F3 5449
14 TraesCS5D01G534500 chr3A 13511357 13512618 1261 False 793.000000 865 96.474000 2627 3582 2 chr3A.!!$F1 955
15 TraesCS5D01G534500 chr6A 579955722 579956354 632 True 761.000000 761 88.290000 1 647 1 chr6A.!!$R4 646
16 TraesCS5D01G534500 chr6A 535995215 535995855 640 True 608.000000 608 84.091000 1 647 1 chr6A.!!$R3 646
17 TraesCS5D01G534500 chr1B 648680498 648681013 515 True 752.000000 752 92.925000 2628 3148 1 chr1B.!!$R2 520
18 TraesCS5D01G534500 chr1B 551720727 551721305 578 False 627.000000 627 86.242000 34 625 1 chr1B.!!$F2 591
19 TraesCS5D01G534500 chr6D 433768624 433769258 634 True 686.000000 686 86.133000 1 647 1 chr6D.!!$R4 646
20 TraesCS5D01G534500 chr6D 389608602 389609246 644 True 584.000000 584 83.459000 1 647 1 chr6D.!!$R3 646
21 TraesCS5D01G534500 chr1D 452340982 452341549 567 False 625.000000 625 86.598000 32 607 1 chr1D.!!$F3 575
22 TraesCS5D01G534500 chr1D 110519233 110519783 550 True 352.500000 357 89.287500 391 981 2 chr1D.!!$R4 590
23 TraesCS5D01G534500 chr6B 656033336 656034300 964 True 491.000000 612 88.137500 1 981 2 chr6B.!!$R5 980
24 TraesCS5D01G534500 chr6B 7555482 7556035 553 False 379.000000 455 91.160000 2905 3583 2 chr6B.!!$F3 678
25 TraesCS5D01G534500 chr4A 619574801 619578589 3788 True 441.500000 579 86.034500 4675 7287 4 chr4A.!!$R3 2612
26 TraesCS5D01G534500 chr4A 619503446 619507239 3793 True 336.400000 584 87.710400 4675 7287 5 chr4A.!!$R2 2612
27 TraesCS5D01G534500 chr4A 619438723 619445926 7203 True 316.028571 590 88.361143 4675 7287 7 chr4A.!!$R1 2612
28 TraesCS5D01G534500 chr7D 591454635 591455517 882 True 461.500000 573 85.619500 32 981 2 chr7D.!!$R2 949
29 TraesCS5D01G534500 chr7B 26739224 26739814 590 False 566.000000 566 84.058000 33 647 1 chr7B.!!$F1 614
30 TraesCS5D01G534500 chr1A 10898700 10899364 664 False 337.333333 353 94.110333 2644 3582 3 chr1A.!!$F3 938
31 TraesCS5D01G534500 chr1A 10843745 10844409 664 False 333.666667 353 93.775333 2644 3582 3 chr1A.!!$F2 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 385 0.391927 TTTTATCTGCCCCGTCGTGG 60.392 55.0 0.00 0.0 37.55 4.94 F
1069 1181 0.318441 CCTCGTTCTGGTGCTCTTCA 59.682 55.0 0.00 0.0 0.00 3.02 F
2586 2983 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.0 0.00 0.0 0.00 4.37 F
2958 3356 0.044549 ATTGGGCCATGGGAATGGTT 59.955 50.0 15.13 0.0 43.53 3.67 F
3613 4511 0.397254 ATGGGACGGAGGGAGTAGTG 60.397 60.0 0.00 0.0 0.00 2.74 F
4066 4967 0.984230 CTGTGTTTCCCTCCAGCCTA 59.016 55.0 0.00 0.0 0.00 3.93 F
5262 9760 1.448985 TGCCTATCCGTTTGAAGCAC 58.551 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1150 1262 0.473694 TGGAGGGGAAGCACTGAGAA 60.474 55.000 0.00 0.0 0.0 2.87 R
2614 3011 0.179194 GGAGCTCGACGTGACACTAC 60.179 60.000 7.83 0.0 0.0 2.73 R
3594 4492 0.397254 CACTACTCCCTCCGTCCCAT 60.397 60.000 0.00 0.0 0.0 4.00 R
3893 4794 1.129251 CCTGCACTTATGTTCACTGCG 59.871 52.381 0.00 0.0 0.0 5.18 R
5245 9743 1.006832 CGGTGCTTCAAACGGATAGG 58.993 55.000 0.00 0.0 0.0 2.57 R
5499 10113 1.208776 GGTACCCGCTAGTTCATTGGT 59.791 52.381 0.00 0.0 0.0 3.67 R
6443 15284 0.042131 TGGGACGGAGGGAGTACAAT 59.958 55.000 0.00 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 213 6.446318 TGATTTTGCTTGATAGGTGTTTGTC 58.554 36.000 0.00 0.00 0.00 3.18
207 240 4.085733 TGCTTGTAAGGGCAAATGTGTAT 58.914 39.130 0.00 0.00 35.40 2.29
218 252 8.361169 AGGGCAAATGTGTATAAATTGTAGTT 57.639 30.769 0.00 0.00 0.00 2.24
220 254 8.868916 GGGCAAATGTGTATAAATTGTAGTTTG 58.131 33.333 0.00 0.00 0.00 2.93
252 291 5.900865 TTGCATATGAGCAGATGTTTTGA 57.099 34.783 6.97 0.00 46.54 2.69
327 375 9.140286 GGAAAAGATTAAGTTGTTTTATCTGCC 57.860 33.333 0.00 0.00 35.82 4.85
336 385 0.391927 TTTTATCTGCCCCGTCGTGG 60.392 55.000 0.00 0.00 37.55 4.94
365 414 6.824305 AATCAAAGCTTAGCAGTAACATGT 57.176 33.333 7.07 0.00 0.00 3.21
381 430 6.820656 AGTAACATGTAATTTGAGAGAGCAGG 59.179 38.462 0.00 0.00 0.00 4.85
382 431 5.426689 ACATGTAATTTGAGAGAGCAGGA 57.573 39.130 0.00 0.00 0.00 3.86
383 432 5.181748 ACATGTAATTTGAGAGAGCAGGAC 58.818 41.667 0.00 0.00 0.00 3.85
384 433 5.046014 ACATGTAATTTGAGAGAGCAGGACT 60.046 40.000 0.00 0.00 0.00 3.85
406 457 2.226674 GCAGGAGCTTTGTCTTGGTTAC 59.773 50.000 0.00 0.00 37.91 2.50
425 479 1.883926 ACACTGGCCGAAATTGGTTAC 59.116 47.619 0.00 0.00 0.00 2.50
618 714 4.956085 GGTTCCACCTTTTGTTTTATGCT 58.044 39.130 0.00 0.00 34.73 3.79
653 749 9.158233 TGTACAACTAACTAATGATTACCTTGC 57.842 33.333 0.00 0.00 0.00 4.01
654 750 9.158233 GTACAACTAACTAATGATTACCTTGCA 57.842 33.333 0.00 0.00 0.00 4.08
655 751 8.630054 ACAACTAACTAATGATTACCTTGCAA 57.370 30.769 0.00 0.00 0.00 4.08
656 752 9.243105 ACAACTAACTAATGATTACCTTGCAAT 57.757 29.630 0.00 0.00 0.00 3.56
663 759 9.686683 ACTAATGATTACCTTGCAATAAAGAGT 57.313 29.630 0.00 0.00 0.00 3.24
666 762 9.686683 AATGATTACCTTGCAATAAAGAGTACT 57.313 29.630 0.00 0.00 0.00 2.73
667 763 9.686683 ATGATTACCTTGCAATAAAGAGTACTT 57.313 29.630 0.00 0.00 38.05 2.24
668 764 9.515226 TGATTACCTTGCAATAAAGAGTACTTT 57.485 29.630 0.00 0.00 46.36 2.66
669 765 9.774742 GATTACCTTGCAATAAAGAGTACTTTG 57.225 33.333 0.00 0.00 44.67 2.77
670 766 8.911918 TTACCTTGCAATAAAGAGTACTTTGA 57.088 30.769 0.00 0.00 44.67 2.69
671 767 9.515226 TTACCTTGCAATAAAGAGTACTTTGAT 57.485 29.630 0.00 0.00 44.67 2.57
672 768 7.820648 ACCTTGCAATAAAGAGTACTTTGATG 58.179 34.615 0.00 0.00 44.67 3.07
673 769 7.448469 ACCTTGCAATAAAGAGTACTTTGATGT 59.552 33.333 0.00 0.00 44.67 3.06
674 770 8.946085 CCTTGCAATAAAGAGTACTTTGATGTA 58.054 33.333 0.00 0.00 44.67 2.29
715 811 8.880878 TTGATTTGATGCTCCATATTCATTTG 57.119 30.769 0.00 0.00 0.00 2.32
723 819 7.936496 TGCTCCATATTCATTTGACACTTAA 57.064 32.000 0.00 0.00 0.00 1.85
819 915 2.825836 GCTTCGGCATCCACTGGG 60.826 66.667 0.00 0.00 41.33 4.45
841 937 4.767409 GGGAGCAAACAAGAAGGTAATCTT 59.233 41.667 0.00 0.00 40.23 2.40
935 1044 6.375736 TCCAAAATGCTGAATTTACGTATCCA 59.624 34.615 0.00 0.00 37.51 3.41
941 1052 6.683715 TGCTGAATTTACGTATCCATATCGA 58.316 36.000 0.00 0.00 0.00 3.59
963 1074 5.408909 CGACCTGATACTGATACACGTATCT 59.591 44.000 16.12 2.41 41.45 1.98
983 1094 7.096023 CGTATCTGTATCAGTGCATTTTAGTCC 60.096 40.741 0.00 0.00 32.61 3.85
990 1101 2.027561 AGTGCATTTTAGTCCGCCACTA 60.028 45.455 0.00 0.00 36.43 2.74
991 1102 2.943033 GTGCATTTTAGTCCGCCACTAT 59.057 45.455 0.00 0.00 37.44 2.12
992 1103 3.002348 GTGCATTTTAGTCCGCCACTATC 59.998 47.826 0.00 0.00 37.44 2.08
993 1104 3.118408 TGCATTTTAGTCCGCCACTATCT 60.118 43.478 0.00 0.00 37.44 1.98
994 1105 3.248602 GCATTTTAGTCCGCCACTATCTG 59.751 47.826 0.00 0.00 37.44 2.90
995 1106 4.442706 CATTTTAGTCCGCCACTATCTGT 58.557 43.478 0.00 0.00 37.44 3.41
1069 1181 0.318441 CCTCGTTCTGGTGCTCTTCA 59.682 55.000 0.00 0.00 0.00 3.02
1150 1262 0.608640 CCGTAAGCACCTCTCCTTGT 59.391 55.000 0.00 0.00 0.00 3.16
1216 1328 4.083003 GCCGTAATTGGACATCTTGTTTGA 60.083 41.667 0.00 0.00 0.00 2.69
1223 1335 2.485814 GGACATCTTGTTTGACTCCTGC 59.514 50.000 0.00 0.00 0.00 4.85
1260 1372 0.833287 ACGGATACTGGCTGAAGCAT 59.167 50.000 4.43 0.00 44.36 3.79
1263 1375 1.671979 GATACTGGCTGAAGCATGCA 58.328 50.000 21.98 0.00 44.36 3.96
1287 1399 2.234896 TGTCACCCTATTCCGGTACA 57.765 50.000 0.00 0.00 30.42 2.90
1289 1401 2.696707 TGTCACCCTATTCCGGTACATC 59.303 50.000 0.00 0.00 30.42 3.06
1303 1417 1.327690 TACATCACGCACCTCCCTCC 61.328 60.000 0.00 0.00 0.00 4.30
1365 1479 7.201741 GCTTTATTTCTGTCTTAGTGAATCCCC 60.202 40.741 0.00 0.00 0.00 4.81
1439 1556 0.824759 GAGGCCAGGATAGTCGTGTT 59.175 55.000 5.01 0.00 30.87 3.32
1442 1559 1.090052 GCCAGGATAGTCGTGTTGGC 61.090 60.000 0.00 0.00 43.54 4.52
1576 1859 9.902684 AACTCCTGATGGATGAAATATGATATC 57.097 33.333 0.00 0.00 42.29 1.63
1680 1975 8.848948 TTGTAATGTTGATGTGTTAACAGTTG 57.151 30.769 8.98 0.00 40.39 3.16
1716 2011 4.502105 TGCTCCAGCCTGTTAAATGATA 57.498 40.909 0.00 0.00 41.18 2.15
1840 2135 4.458642 TGATCATTTCTTTGATGTCGCCAA 59.541 37.500 0.00 0.00 36.48 4.52
1851 2146 0.451383 TGTCGCCAATGTTGCTATGC 59.549 50.000 0.00 0.00 0.00 3.14
1857 2152 2.167075 GCCAATGTTGCTATGCCTCTTT 59.833 45.455 0.00 0.00 0.00 2.52
1872 2167 5.674525 TGCCTCTTTATTTGATCAGATCGT 58.325 37.500 1.29 0.00 0.00 3.73
2284 2671 3.675698 CGTAACAGAAGCTTGAAGTCTCC 59.324 47.826 2.10 0.00 0.00 3.71
2313 2700 6.430925 CCTCACCAAATCAGTGAACAATTCTA 59.569 38.462 0.00 0.00 43.36 2.10
2493 2882 6.103997 TCTCTACTTATTTTGCCAAGTACCG 58.896 40.000 0.00 0.00 36.44 4.02
2500 2889 0.390603 TTGCCAAGTACCGATGACCG 60.391 55.000 0.00 0.00 38.18 4.79
2577 2974 9.368674 GAGATGTTTTACTTCTAAAGTACTCCC 57.631 37.037 0.00 0.00 43.30 4.30
2578 2975 9.102453 AGATGTTTTACTTCTAAAGTACTCCCT 57.898 33.333 0.00 0.00 43.30 4.20
2579 2976 9.368674 GATGTTTTACTTCTAAAGTACTCCCTC 57.631 37.037 0.00 0.00 43.30 4.30
2580 2977 7.674120 TGTTTTACTTCTAAAGTACTCCCTCC 58.326 38.462 0.00 0.00 43.30 4.30
2581 2978 6.521151 TTTACTTCTAAAGTACTCCCTCCG 57.479 41.667 0.00 0.00 43.30 4.63
2582 2979 4.044946 ACTTCTAAAGTACTCCCTCCGT 57.955 45.455 0.00 0.00 40.69 4.69
2583 2980 4.015764 ACTTCTAAAGTACTCCCTCCGTC 58.984 47.826 0.00 0.00 40.69 4.79
2584 2981 3.010200 TCTAAAGTACTCCCTCCGTCC 57.990 52.381 0.00 0.00 0.00 4.79
2585 2982 2.030371 CTAAAGTACTCCCTCCGTCCC 58.970 57.143 0.00 0.00 0.00 4.46
2586 2983 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2587 2984 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2588 2985 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2589 2986 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2590 2987 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2591 2988 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2592 2989 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2593 2990 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2594 2991 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2595 2992 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2596 2993 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2597 2994 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
2598 2995 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
2599 2996 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
2600 2997 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
2601 2998 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
2602 2999 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
2603 3000 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
2958 3356 0.044549 ATTGGGCCATGGGAATGGTT 59.955 50.000 15.13 0.00 43.53 3.67
3047 3447 0.893727 AATTGGAAACTCGCCCGCTT 60.894 50.000 0.00 0.00 0.00 4.68
3238 3955 2.022129 CGAACGTCTTGCGAGCCTT 61.022 57.895 0.00 0.00 44.77 4.35
3597 4495 6.422776 AAAAGCTCACGTCTTACATTATGG 57.577 37.500 0.00 0.00 0.00 2.74
3598 4496 4.060038 AGCTCACGTCTTACATTATGGG 57.940 45.455 0.00 0.00 0.00 4.00
3613 4511 0.397254 ATGGGACGGAGGGAGTAGTG 60.397 60.000 0.00 0.00 0.00 2.74
3717 4617 2.091541 TGGATTTGCCTCGTGGAATTC 58.908 47.619 7.92 0.00 37.63 2.17
3768 4668 7.981789 TGATAGTGCAAATTTGTTGTTGGTAAA 59.018 29.630 19.03 0.00 0.00 2.01
3836 4737 5.783100 CTCTCTTTGAGTCAGATGCTTTC 57.217 43.478 0.00 0.00 37.99 2.62
3858 4759 8.560355 TTTCTGCTTGTGATGCTTACTAATTA 57.440 30.769 0.00 0.00 0.00 1.40
4066 4967 0.984230 CTGTGTTTCCCTCCAGCCTA 59.016 55.000 0.00 0.00 0.00 3.93
4067 4968 1.561542 CTGTGTTTCCCTCCAGCCTAT 59.438 52.381 0.00 0.00 0.00 2.57
4070 4971 2.239907 GTGTTTCCCTCCAGCCTATTCT 59.760 50.000 0.00 0.00 0.00 2.40
4071 4972 3.454812 GTGTTTCCCTCCAGCCTATTCTA 59.545 47.826 0.00 0.00 0.00 2.10
4215 5211 3.356529 ACCTAGAATTGCCCAAGTCTG 57.643 47.619 18.09 7.49 44.29 3.51
4240 5236 4.141846 TGCCAGTTAAAACATCCTTGCAAA 60.142 37.500 0.00 0.00 0.00 3.68
4254 5250 6.084326 TCCTTGCAAATTTTGTAGGTCTTC 57.916 37.500 21.46 3.52 36.56 2.87
4256 5252 5.221422 CCTTGCAAATTTTGTAGGTCTTCCA 60.221 40.000 17.39 1.98 35.89 3.53
4289 5285 4.792704 GCCTTTGGATATGTTATGGCAACG 60.793 45.833 0.00 0.00 38.99 4.10
4292 5288 3.485394 TGGATATGTTATGGCAACGCAT 58.515 40.909 0.00 0.00 42.51 4.73
4316 5312 8.684520 CATCTTTCTCTTTATCCTGCAATTCTT 58.315 33.333 0.00 0.00 0.00 2.52
4333 5329 9.219603 TGCAATTCTTATTCTACCTATATGTGC 57.780 33.333 0.00 0.00 0.00 4.57
4395 5400 5.762711 ACGTACATGCCATTTATCTGCATTA 59.237 36.000 0.00 0.00 42.79 1.90
4400 5405 5.756195 TGCCATTTATCTGCATTACTGAC 57.244 39.130 0.00 0.00 0.00 3.51
4402 5407 4.823989 GCCATTTATCTGCATTACTGACCT 59.176 41.667 0.00 0.00 0.00 3.85
4403 5408 5.049129 GCCATTTATCTGCATTACTGACCTC 60.049 44.000 0.00 0.00 0.00 3.85
4404 5409 6.294473 CCATTTATCTGCATTACTGACCTCT 58.706 40.000 0.00 0.00 0.00 3.69
4475 5480 8.865244 ATACCCCTCCAACTAAAGTATTTCTA 57.135 34.615 0.00 0.00 40.09 2.10
4485 5490 9.406828 CAACTAAAGTATTTCTACAAAAAGGCC 57.593 33.333 0.00 0.00 40.09 5.19
4585 5590 8.650143 AAACCAATACTCCACTTCATATTGTT 57.350 30.769 0.00 0.00 34.56 2.83
4589 5594 7.201732 CCAATACTCCACTTCATATTGTTGGTC 60.202 40.741 0.00 0.00 34.56 4.02
4758 8906 3.611766 ACTGTAAGACTTCCCCATTCG 57.388 47.619 0.00 0.00 37.43 3.34
4844 8992 9.856488 GATATTTGCATATTCTGATCAGCATTT 57.144 29.630 18.36 5.15 0.00 2.32
4846 8994 7.764695 TTTGCATATTCTGATCAGCATTTTG 57.235 32.000 18.36 13.97 0.00 2.44
4847 8995 5.286438 TGCATATTCTGATCAGCATTTTGC 58.714 37.500 23.58 23.58 45.46 3.68
4878 9039 4.202243 ACATTTCCCCAACATGTCAACTTG 60.202 41.667 0.00 0.00 0.00 3.16
4879 9040 2.746279 TCCCCAACATGTCAACTTGT 57.254 45.000 0.00 0.00 36.02 3.16
4936 9098 5.726980 TGCAATTGACTGGCTTTTATCTT 57.273 34.783 10.34 0.00 0.00 2.40
4969 9140 3.743911 CACTTGTGTGCATTGCAATTGAT 59.256 39.130 13.94 0.00 41.47 2.57
5000 9438 8.726870 TTTATCTGTTACCAAATGCCTAGTAC 57.273 34.615 0.00 0.00 0.00 2.73
5007 9445 4.833390 ACCAAATGCCTAGTACTGACTTC 58.167 43.478 5.39 0.00 37.10 3.01
5046 9539 5.593909 TGCAGGACATATGGTTTTATCCTTG 59.406 40.000 7.80 5.56 34.27 3.61
5066 9559 2.575735 TGCAGTGAGGGATTTATCACCA 59.424 45.455 0.00 0.00 45.61 4.17
5092 9585 7.875327 AATATTGGTGTGTTATGGTAAGTCC 57.125 36.000 0.00 0.00 0.00 3.85
5096 9589 6.436738 TGGTGTGTTATGGTAAGTCCTAAA 57.563 37.500 0.00 0.00 37.07 1.85
5262 9760 1.448985 TGCCTATCCGTTTGAAGCAC 58.551 50.000 0.00 0.00 0.00 4.40
5289 9787 3.305335 CGTGCTTCCTTGCCTTTGTTTAT 60.305 43.478 0.00 0.00 0.00 1.40
5291 9789 5.393027 CGTGCTTCCTTGCCTTTGTTTATAT 60.393 40.000 0.00 0.00 0.00 0.86
5299 9797 9.415008 TCCTTGCCTTTGTTTATATAGCAATTA 57.585 29.630 4.39 0.00 38.02 1.40
5467 10081 4.886489 GCTTATCTTGAAGGCTGGAGATTT 59.114 41.667 11.29 0.00 31.71 2.17
5536 10150 4.711399 GGTACCTAAAATGCCGGTTATCT 58.289 43.478 4.06 0.00 32.36 1.98
5622 10236 2.751259 GCAGAGATGCAATTCACCTTCA 59.249 45.455 0.00 0.00 34.41 3.02
5625 10239 4.036498 CAGAGATGCAATTCACCTTCATCC 59.964 45.833 0.00 0.00 35.41 3.51
6046 14859 3.274288 GGCTGATTGTTCCTTGAGGTAG 58.726 50.000 0.00 0.00 36.34 3.18
6065 14879 5.412904 AGGTAGCAAACATCTCAGCTAAAAC 59.587 40.000 0.00 0.00 40.83 2.43
6166 14980 9.836179 ATCTTTATCATACTACTTCCTCCATCT 57.164 33.333 0.00 0.00 0.00 2.90
6352 15182 6.551385 TGTCAGAAGATTCTTTTCTTGCTC 57.449 37.500 0.00 0.00 36.10 4.26
6378 15214 6.299805 TCCCTATATATGATGCAACCAGTC 57.700 41.667 0.00 0.00 0.00 3.51
6382 15218 6.478016 CCTATATATGATGCAACCAGTCGATG 59.522 42.308 0.00 0.00 0.00 3.84
6403 15244 3.886505 TGGTTGTGTGATTTTGGGTAGAC 59.113 43.478 0.00 0.00 0.00 2.59
6452 15293 8.613060 ATCATCATCATGTTGTATTGTACTCC 57.387 34.615 3.76 0.00 0.00 3.85
6453 15294 6.992123 TCATCATCATGTTGTATTGTACTCCC 59.008 38.462 3.76 0.00 0.00 4.30
6454 15295 6.560003 TCATCATGTTGTATTGTACTCCCT 57.440 37.500 3.76 0.00 0.00 4.20
6455 15296 6.582636 TCATCATGTTGTATTGTACTCCCTC 58.417 40.000 3.76 0.00 0.00 4.30
6456 15297 5.353394 TCATGTTGTATTGTACTCCCTCC 57.647 43.478 0.00 0.00 0.00 4.30
6457 15298 3.880047 TGTTGTATTGTACTCCCTCCG 57.120 47.619 0.00 0.00 0.00 4.63
6458 15299 3.167485 TGTTGTATTGTACTCCCTCCGT 58.833 45.455 0.00 0.00 0.00 4.69
6459 15300 3.194116 TGTTGTATTGTACTCCCTCCGTC 59.806 47.826 0.00 0.00 0.00 4.79
6460 15301 2.381911 TGTATTGTACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
6461 15302 1.685517 GTATTGTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
6462 15303 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
6463 15304 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
6464 15305 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
6465 15306 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
6466 15307 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
6467 15308 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
6468 15309 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6469 15310 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6470 15311 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6471 15312 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6472 15313 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6473 15314 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6474 15315 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6475 15316 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
6476 15317 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
6477 15318 6.222038 TCCGTCCCATAATATAAGAGCATC 57.778 41.667 0.00 0.00 0.00 3.91
6478 15319 5.719563 TCCGTCCCATAATATAAGAGCATCA 59.280 40.000 0.00 0.00 37.82 3.07
6479 15320 5.812642 CCGTCCCATAATATAAGAGCATCAC 59.187 44.000 0.00 0.00 37.82 3.06
6480 15321 6.351371 CCGTCCCATAATATAAGAGCATCACT 60.351 42.308 0.00 0.00 37.82 3.41
6481 15322 7.147897 CCGTCCCATAATATAAGAGCATCACTA 60.148 40.741 0.00 0.00 37.82 2.74
6482 15323 7.702772 CGTCCCATAATATAAGAGCATCACTAC 59.297 40.741 0.00 0.00 37.82 2.73
6483 15324 8.531982 GTCCCATAATATAAGAGCATCACTACA 58.468 37.037 0.00 0.00 37.82 2.74
6484 15325 9.100197 TCCCATAATATAAGAGCATCACTACAA 57.900 33.333 0.00 0.00 37.82 2.41
6485 15326 9.725019 CCCATAATATAAGAGCATCACTACAAA 57.275 33.333 0.00 0.00 37.82 2.83
6490 15331 9.956720 AATATAAGAGCATCACTACAAAAATGC 57.043 29.630 0.00 0.00 43.75 3.56
6491 15332 5.710513 AAGAGCATCACTACAAAAATGCA 57.289 34.783 8.68 0.00 45.39 3.96
6492 15333 5.909621 AGAGCATCACTACAAAAATGCAT 57.090 34.783 8.68 0.00 45.39 3.96
6493 15334 6.276832 AGAGCATCACTACAAAAATGCATT 57.723 33.333 5.99 5.99 45.39 3.56
6494 15335 7.395190 AGAGCATCACTACAAAAATGCATTA 57.605 32.000 13.39 0.00 45.39 1.90
6495 15336 8.004087 AGAGCATCACTACAAAAATGCATTAT 57.996 30.769 13.39 1.77 45.39 1.28
6496 15337 7.919091 AGAGCATCACTACAAAAATGCATTATG 59.081 33.333 13.39 16.65 45.39 1.90
6497 15338 6.982141 AGCATCACTACAAAAATGCATTATGG 59.018 34.615 22.14 13.63 45.39 2.74
6498 15339 6.201425 GCATCACTACAAAAATGCATTATGGG 59.799 38.462 22.14 17.48 43.10 4.00
6499 15340 7.490840 CATCACTACAAAAATGCATTATGGGA 58.509 34.615 22.14 15.82 0.00 4.37
6500 15341 7.473735 TCACTACAAAAATGCATTATGGGAA 57.526 32.000 22.14 11.05 0.00 3.97
6501 15342 7.546358 TCACTACAAAAATGCATTATGGGAAG 58.454 34.615 22.14 18.36 0.00 3.46
6502 15343 6.757947 CACTACAAAAATGCATTATGGGAAGG 59.242 38.462 22.14 12.72 0.00 3.46
6503 15344 6.667414 ACTACAAAAATGCATTATGGGAAGGA 59.333 34.615 22.14 4.23 0.00 3.36
6504 15345 5.981174 ACAAAAATGCATTATGGGAAGGAG 58.019 37.500 22.14 5.62 0.00 3.69
6505 15346 5.104817 ACAAAAATGCATTATGGGAAGGAGG 60.105 40.000 22.14 4.33 0.00 4.30
6506 15347 2.986534 ATGCATTATGGGAAGGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
6507 15348 1.905839 TGCATTATGGGAAGGAGGGA 58.094 50.000 0.00 0.00 0.00 4.20
6573 15414 6.670027 AGAAAGAATCTAGCTAGGTTTCTCCA 59.330 38.462 26.45 8.18 36.32 3.86
6635 15476 5.050499 GCCTTGTCTGATCTGTATGAAATCG 60.050 44.000 0.00 0.00 0.00 3.34
6638 15479 7.440556 CCTTGTCTGATCTGTATGAAATCGATT 59.559 37.037 4.39 4.39 0.00 3.34
6641 15482 6.088749 GTCTGATCTGTATGAAATCGATTCCG 59.911 42.308 11.83 0.00 37.22 4.30
6684 15525 1.683385 GCCTTTTTCTGAACTGCACCT 59.317 47.619 0.00 0.00 0.00 4.00
6714 15560 1.092921 TTGACGGGTTGCACTGTGTC 61.093 55.000 9.86 2.63 0.00 3.67
6720 15566 1.602377 GGGTTGCACTGTGTCAACTAC 59.398 52.381 29.18 23.00 41.53 2.73
6726 15587 4.698575 TGCACTGTGTCAACTACATACAA 58.301 39.130 9.86 0.00 41.10 2.41
6758 15619 4.905269 AGTGAACAAAGACTAAAACACGC 58.095 39.130 0.00 0.00 33.18 5.34
6760 15621 3.690139 TGAACAAAGACTAAAACACGCCA 59.310 39.130 0.00 0.00 0.00 5.69
6769 15630 0.040425 AAAACACGCCACGATTCAGC 60.040 50.000 0.00 0.00 0.00 4.26
6810 15672 9.764363 TTATATCCATATTAATCGCCACTGATC 57.236 33.333 0.00 0.00 0.00 2.92
6825 15687 6.533723 CGCCACTGATCTAGTACAAAATTGTA 59.466 38.462 1.96 1.96 42.35 2.41
6840 15702 4.634012 AATTGTACTAGGCCAGTGTCAA 57.366 40.909 5.01 15.30 38.24 3.18
6847 15709 7.853299 TGTACTAGGCCAGTGTCAATTAATAA 58.147 34.615 5.01 0.00 38.24 1.40
6848 15710 8.491134 TGTACTAGGCCAGTGTCAATTAATAAT 58.509 33.333 5.01 0.00 38.24 1.28
6849 15711 7.807977 ACTAGGCCAGTGTCAATTAATAATG 57.192 36.000 5.01 0.00 35.62 1.90
6850 15712 6.772716 ACTAGGCCAGTGTCAATTAATAATGG 59.227 38.462 5.01 0.00 35.62 3.16
6851 15713 5.765510 AGGCCAGTGTCAATTAATAATGGA 58.234 37.500 5.01 0.00 0.00 3.41
6852 15714 6.376248 AGGCCAGTGTCAATTAATAATGGAT 58.624 36.000 5.01 0.00 0.00 3.41
6853 15715 6.840705 AGGCCAGTGTCAATTAATAATGGATT 59.159 34.615 5.01 0.00 0.00 3.01
6855 15717 6.925165 GCCAGTGTCAATTAATAATGGATTGG 59.075 38.462 6.61 11.20 32.91 3.16
6859 15721 7.506938 AGTGTCAATTAATAATGGATTGGAGGG 59.493 37.037 0.00 0.00 32.91 4.30
6861 15723 7.725397 TGTCAATTAATAATGGATTGGAGGGAG 59.275 37.037 0.00 0.00 32.91 4.30
6866 15728 8.575736 TTAATAATGGATTGGAGGGAGTAGAA 57.424 34.615 0.00 0.00 0.00 2.10
6880 15742 9.847224 GGAGGGAGTAGAACATTTTATAATTCA 57.153 33.333 0.70 0.00 0.00 2.57
6903 15765 4.879545 AGAACGAGGAAGTACTCTCTCATC 59.120 45.833 19.15 16.39 35.33 2.92
6905 15767 5.617528 ACGAGGAAGTACTCTCTCATCTA 57.382 43.478 19.15 0.00 35.33 1.98
6906 15768 5.991861 ACGAGGAAGTACTCTCTCATCTAA 58.008 41.667 19.15 0.00 35.33 2.10
6907 15769 6.416415 ACGAGGAAGTACTCTCTCATCTAAA 58.584 40.000 19.15 0.00 35.33 1.85
6908 15770 6.885376 ACGAGGAAGTACTCTCTCATCTAAAA 59.115 38.462 19.15 0.00 35.33 1.52
6909 15771 7.558444 ACGAGGAAGTACTCTCTCATCTAAAAT 59.442 37.037 19.15 0.00 35.33 1.82
6910 15772 7.860373 CGAGGAAGTACTCTCTCATCTAAAATG 59.140 40.741 19.15 3.22 35.33 2.32
6912 15774 8.691797 AGGAAGTACTCTCTCATCTAAAATGTC 58.308 37.037 0.00 0.00 0.00 3.06
6913 15775 7.923878 GGAAGTACTCTCTCATCTAAAATGTCC 59.076 40.741 0.00 0.00 0.00 4.02
6915 15777 9.702253 AAGTACTCTCTCATCTAAAATGTCCTA 57.298 33.333 0.00 0.00 0.00 2.94
6953 16900 1.965643 AGTACTTGTCAAGTGGCGGTA 59.034 47.619 25.41 4.14 42.84 4.02
6998 16946 2.800544 AGAAATCCAACACGAACGAGTG 59.199 45.455 0.14 8.40 46.83 3.51
7017 16965 1.872197 GCCCATGCACGCAAGGTTTA 61.872 55.000 11.96 0.00 46.39 2.01
7034 16983 4.042187 AGGTTTACATCCTATGATCCTGCC 59.958 45.833 0.00 0.00 33.04 4.85
7036 16985 0.979665 ACATCCTATGATCCTGCCGG 59.020 55.000 0.00 0.00 0.00 6.13
7037 16986 0.392193 CATCCTATGATCCTGCCGGC 60.392 60.000 22.73 22.73 0.00 6.13
7039 16988 2.047844 CTATGATCCTGCCGGCCG 60.048 66.667 26.77 21.04 0.00 6.13
7040 16989 2.523168 TATGATCCTGCCGGCCGA 60.523 61.111 30.73 20.18 0.00 5.54
7041 16990 2.498291 CTATGATCCTGCCGGCCGAG 62.498 65.000 30.73 17.65 0.00 4.63
7066 17015 4.654412 GCGGCCGCAGATCGAGAT 62.654 66.667 43.55 0.00 41.67 2.75
7083 17032 3.376540 GAGATCAATGGTCGAGCTGTAC 58.623 50.000 16.64 5.75 0.00 2.90
7092 17043 1.082038 CGAGCTGTACTATCGGGCG 60.082 63.158 0.00 0.00 32.93 6.13
7094 17045 1.233019 GAGCTGTACTATCGGGCGTA 58.767 55.000 0.00 0.00 0.00 4.42
7103 17054 5.921976 TGTACTATCGGGCGTACAAATAATG 59.078 40.000 8.55 0.00 41.95 1.90
7104 17055 3.744426 ACTATCGGGCGTACAAATAATGC 59.256 43.478 0.00 0.00 0.00 3.56
7105 17056 0.931702 TCGGGCGTACAAATAATGCG 59.068 50.000 0.00 0.00 0.00 4.73
7106 17057 0.653636 CGGGCGTACAAATAATGCGT 59.346 50.000 0.00 0.00 0.00 5.24
7107 17058 1.859703 CGGGCGTACAAATAATGCGTA 59.140 47.619 0.00 0.00 0.00 4.42
7109 17060 3.422603 CGGGCGTACAAATAATGCGTATC 60.423 47.826 0.00 0.00 0.00 2.24
7111 17062 3.744426 GGCGTACAAATAATGCGTATCCT 59.256 43.478 0.00 0.00 0.00 3.24
7112 17063 4.212636 GGCGTACAAATAATGCGTATCCTT 59.787 41.667 0.00 0.00 0.00 3.36
7114 17065 5.050634 GCGTACAAATAATGCGTATCCTTCA 60.051 40.000 0.00 0.00 0.00 3.02
7115 17066 6.347402 GCGTACAAATAATGCGTATCCTTCAT 60.347 38.462 0.00 0.00 0.00 2.57
7116 17067 7.227461 CGTACAAATAATGCGTATCCTTCATC 58.773 38.462 0.00 0.00 0.00 2.92
7117 17068 6.228273 ACAAATAATGCGTATCCTTCATCG 57.772 37.500 0.00 0.00 0.00 3.84
7118 17069 5.758296 ACAAATAATGCGTATCCTTCATCGT 59.242 36.000 0.00 0.00 0.00 3.73
7119 17070 6.926826 ACAAATAATGCGTATCCTTCATCGTA 59.073 34.615 0.00 0.00 0.00 3.43
7120 17071 7.116376 ACAAATAATGCGTATCCTTCATCGTAG 59.884 37.037 0.00 0.00 0.00 3.51
7121 17072 2.417339 TGCGTATCCTTCATCGTAGC 57.583 50.000 0.00 0.00 0.00 3.58
7124 17075 2.096069 GCGTATCCTTCATCGTAGCGTA 60.096 50.000 0.00 0.00 0.00 4.42
7126 17077 3.424565 CGTATCCTTCATCGTAGCGTAGG 60.425 52.174 0.00 0.00 0.00 3.18
7127 17078 2.048444 TCCTTCATCGTAGCGTAGGT 57.952 50.000 0.00 0.00 44.89 3.08
7128 17079 1.674441 TCCTTCATCGTAGCGTAGGTG 59.326 52.381 0.00 0.00 40.22 4.00
7129 17080 1.269102 CCTTCATCGTAGCGTAGGTGG 60.269 57.143 0.00 0.00 40.22 4.61
7130 17081 0.742505 TTCATCGTAGCGTAGGTGGG 59.257 55.000 0.00 0.00 40.22 4.61
7131 17082 0.394762 TCATCGTAGCGTAGGTGGGT 60.395 55.000 0.00 0.00 40.22 4.51
7132 17083 0.030369 CATCGTAGCGTAGGTGGGTC 59.970 60.000 0.00 0.00 40.22 4.46
7150 17101 1.180029 TCGTCTTCCGAAACCCTAGG 58.820 55.000 0.06 0.06 44.03 3.02
7194 17145 2.755876 TGGCGATCGCTCCTCAGT 60.756 61.111 36.25 0.00 41.60 3.41
7206 17157 3.374402 CTCAGTCGGTCGCACCCT 61.374 66.667 0.50 0.00 33.75 4.34
7227 17178 2.363018 CTCTCTGGTCTCCGGCCA 60.363 66.667 2.24 0.00 34.42 5.36
7266 17217 3.741476 CCGGCAGCAGTTCTTGGC 61.741 66.667 0.00 0.00 0.00 4.52
7292 17243 3.814577 ACCTGATCGGTTCTTCACG 57.185 52.632 0.00 0.00 46.37 4.35
7293 17244 1.254026 ACCTGATCGGTTCTTCACGA 58.746 50.000 0.00 0.00 46.37 4.35
7294 17245 1.202582 ACCTGATCGGTTCTTCACGAG 59.797 52.381 0.00 0.00 46.37 4.18
7295 17246 1.469940 CCTGATCGGTTCTTCACGAGG 60.470 57.143 0.00 0.00 42.89 4.63
7296 17247 1.472878 CTGATCGGTTCTTCACGAGGA 59.527 52.381 0.00 0.00 42.89 3.71
7297 17248 2.099921 CTGATCGGTTCTTCACGAGGAT 59.900 50.000 0.00 0.00 42.89 3.24
7298 17249 3.284617 TGATCGGTTCTTCACGAGGATA 58.715 45.455 0.00 0.00 42.89 2.59
7299 17250 3.066342 TGATCGGTTCTTCACGAGGATAC 59.934 47.826 0.00 0.00 42.89 2.24
7300 17251 1.399440 TCGGTTCTTCACGAGGATACG 59.601 52.381 0.00 0.00 46.39 3.06
7301 17252 1.557651 GGTTCTTCACGAGGATACGC 58.442 55.000 0.00 0.00 46.39 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 184 6.040278 TGACAAACACCTATCAAGCAAAATCA 59.960 34.615 0.00 0.00 0.00 2.57
180 213 5.521010 CACATTTGCCCTTACAAGCATTATG 59.479 40.000 0.00 0.00 39.11 1.90
263 302 6.700081 GTCAATCATTGCATGTTTCATGCTAT 59.300 34.615 27.05 23.29 44.79 2.97
265 304 4.868171 GTCAATCATTGCATGTTTCATGCT 59.132 37.500 27.05 11.83 44.79 3.79
266 305 4.259650 CGTCAATCATTGCATGTTTCATGC 60.260 41.667 22.59 22.59 44.76 4.06
267 306 5.096849 TCGTCAATCATTGCATGTTTCATG 58.903 37.500 5.49 5.49 0.00 3.07
268 307 5.313520 TCGTCAATCATTGCATGTTTCAT 57.686 34.783 0.00 0.00 0.00 2.57
269 308 4.762956 TCGTCAATCATTGCATGTTTCA 57.237 36.364 0.00 0.00 0.00 2.69
270 309 6.257423 TGTATCGTCAATCATTGCATGTTTC 58.743 36.000 0.00 0.00 0.00 2.78
327 375 2.046314 ATTTCAGGCCACGACGGG 60.046 61.111 5.01 0.00 34.06 5.28
336 385 3.192212 ACTGCTAAGCTTTGATTTCAGGC 59.808 43.478 12.29 1.17 0.00 4.85
381 430 1.534595 CAAGACAAAGCTCCTGCAGTC 59.465 52.381 13.81 1.38 42.74 3.51
382 431 1.602311 CAAGACAAAGCTCCTGCAGT 58.398 50.000 13.81 0.00 42.74 4.40
383 432 0.879765 CCAAGACAAAGCTCCTGCAG 59.120 55.000 6.78 6.78 42.74 4.41
384 433 0.183492 ACCAAGACAAAGCTCCTGCA 59.817 50.000 0.00 0.00 42.74 4.41
406 457 1.201414 GGTAACCAATTTCGGCCAGTG 59.799 52.381 2.24 0.00 0.00 3.66
447 501 3.949586 TGGGACATCTATCATGCCAAA 57.050 42.857 0.00 0.00 0.00 3.28
647 743 7.448469 ACATCAAAGTACTCTTTATTGCAAGGT 59.552 33.333 4.94 0.00 41.31 3.50
648 744 7.820648 ACATCAAAGTACTCTTTATTGCAAGG 58.179 34.615 4.94 0.00 41.31 3.61
676 772 9.729281 AGCATCAAATCAAATCATTAGGTTTTT 57.271 25.926 0.00 0.00 0.00 1.94
677 773 9.374838 GAGCATCAAATCAAATCATTAGGTTTT 57.625 29.630 0.00 0.00 33.17 2.43
678 774 7.983484 GGAGCATCAAATCAAATCATTAGGTTT 59.017 33.333 0.00 0.00 36.25 3.27
679 775 7.124599 TGGAGCATCAAATCAAATCATTAGGTT 59.875 33.333 0.00 0.00 36.25 3.50
680 776 6.608405 TGGAGCATCAAATCAAATCATTAGGT 59.392 34.615 0.00 0.00 36.25 3.08
681 777 7.046292 TGGAGCATCAAATCAAATCATTAGG 57.954 36.000 0.00 0.00 36.25 2.69
684 780 9.706691 GAATATGGAGCATCAAATCAAATCATT 57.293 29.630 0.00 0.00 36.25 2.57
685 781 8.866093 TGAATATGGAGCATCAAATCAAATCAT 58.134 29.630 0.00 0.00 36.25 2.45
686 782 8.240267 TGAATATGGAGCATCAAATCAAATCA 57.760 30.769 0.00 0.00 36.25 2.57
687 783 9.706691 AATGAATATGGAGCATCAAATCAAATC 57.293 29.630 0.00 0.00 36.25 2.17
689 785 9.320352 CAAATGAATATGGAGCATCAAATCAAA 57.680 29.630 0.00 0.00 36.25 2.69
690 786 8.697292 TCAAATGAATATGGAGCATCAAATCAA 58.303 29.630 0.00 0.00 36.25 2.57
723 819 8.842764 TCCAAAGGGGTAGAATTAGACTTTTAT 58.157 33.333 0.00 0.00 38.11 1.40
819 915 5.944013 GAAGATTACCTTCTTGTTTGCTCC 58.056 41.667 0.00 0.00 46.03 4.70
935 1044 5.938710 ACGTGTATCAGTATCAGGTCGATAT 59.061 40.000 0.00 0.00 38.85 1.63
941 1052 6.062749 ACAGATACGTGTATCAGTATCAGGT 58.937 40.000 19.21 10.81 46.95 4.00
963 1074 3.621268 GCGGACTAAAATGCACTGATACA 59.379 43.478 0.00 0.00 0.00 2.29
969 1080 1.165270 GTGGCGGACTAAAATGCACT 58.835 50.000 0.00 0.00 0.00 4.40
990 1101 1.301244 GATCGCCATCGCCACAGAT 60.301 57.895 0.00 0.00 35.26 2.90
991 1102 2.106938 GATCGCCATCGCCACAGA 59.893 61.111 0.00 0.00 35.26 3.41
992 1103 2.969238 GGATCGCCATCGCCACAG 60.969 66.667 0.00 0.00 35.26 3.66
993 1104 4.889856 CGGATCGCCATCGCCACA 62.890 66.667 0.00 0.00 35.26 4.17
994 1105 4.585526 TCGGATCGCCATCGCCAC 62.586 66.667 0.00 0.00 35.26 5.01
995 1106 4.585526 GTCGGATCGCCATCGCCA 62.586 66.667 0.00 0.00 35.26 5.69
1069 1181 1.835927 GCAAGGTGGAGGTCTCTGCT 61.836 60.000 0.00 0.00 32.15 4.24
1072 1184 0.907230 GAGGCAAGGTGGAGGTCTCT 60.907 60.000 0.00 0.00 0.00 3.10
1141 1253 3.324993 GAAGCACTGAGAACAAGGAGAG 58.675 50.000 0.00 0.00 0.00 3.20
1142 1254 2.037772 GGAAGCACTGAGAACAAGGAGA 59.962 50.000 0.00 0.00 0.00 3.71
1150 1262 0.473694 TGGAGGGGAAGCACTGAGAA 60.474 55.000 0.00 0.00 0.00 2.87
1242 1354 1.224075 CATGCTTCAGCCAGTATCCG 58.776 55.000 0.00 0.00 41.18 4.18
1260 1372 2.158623 GGAATAGGGTGACATGGATGCA 60.159 50.000 0.00 0.00 0.00 3.96
1263 1375 1.699634 CCGGAATAGGGTGACATGGAT 59.300 52.381 0.00 0.00 0.00 3.41
1287 1399 1.613630 AAGGAGGGAGGTGCGTGAT 60.614 57.895 0.00 0.00 0.00 3.06
1289 1401 2.046892 CAAGGAGGGAGGTGCGTG 60.047 66.667 0.00 0.00 0.00 5.34
1303 1417 1.265095 TCTTTGAGCAAAGCGAGCAAG 59.735 47.619 16.12 0.00 45.48 4.01
1326 1440 6.041979 ACAGAAATAAAGCATTGGGTTGAACT 59.958 34.615 0.00 0.00 34.38 3.01
1331 1445 6.670695 AAGACAGAAATAAAGCATTGGGTT 57.329 33.333 0.00 0.00 35.98 4.11
1379 1493 8.306038 TCTGATGCAAATGTTAAGTGCTAAAAT 58.694 29.630 0.00 0.00 39.09 1.82
1391 1508 4.669206 TGGTTGTTCTGATGCAAATGTT 57.331 36.364 0.00 0.00 0.00 2.71
1439 1556 4.225573 AGTACCTAATAATACCACCGCCA 58.774 43.478 0.00 0.00 0.00 5.69
1442 1559 7.574592 GCTCTGTAGTACCTAATAATACCACCG 60.575 44.444 0.00 0.00 34.13 4.94
1481 1761 7.607991 CAGTATTCAGTAGAAACCCAATCAAGT 59.392 37.037 0.00 0.00 37.29 3.16
1487 1768 7.635089 GCCTATCAGTATTCAGTAGAAACCCAA 60.635 40.741 0.00 0.00 37.29 4.12
1576 1859 6.656632 TCTAGGCCTCTGATGTTAAGTATG 57.343 41.667 9.68 0.00 0.00 2.39
1716 2011 7.415541 CCATGATACATCGAACCTGAAAAACAT 60.416 37.037 0.00 0.00 0.00 2.71
1840 2135 7.286087 TGATCAAATAAAGAGGCATAGCAACAT 59.714 33.333 0.00 0.00 0.00 2.71
1851 2146 7.959689 ATGACGATCTGATCAAATAAAGAGG 57.040 36.000 17.19 0.24 0.00 3.69
1857 2152 9.415544 CACTTCATATGACGATCTGATCAAATA 57.584 33.333 15.55 11.09 0.00 1.40
1975 2357 8.697846 TCTAAGACAAACATATACTGGTTTCG 57.302 34.615 0.00 0.00 35.17 3.46
2030 2412 6.657875 AGGAGACCTGATTTTTCTTCTATGG 58.342 40.000 0.00 0.00 29.57 2.74
2072 2454 7.939039 TGATACCATAAAGGGCAAGATAAAGAG 59.061 37.037 0.00 0.00 43.89 2.85
2119 2502 1.895131 AGTTGTGGGAATGTTCATGGC 59.105 47.619 0.00 0.00 0.00 4.40
2284 2671 3.407424 TCACTGATTTGGTGAGGTCAG 57.593 47.619 0.00 0.00 42.80 3.51
2455 2844 4.799715 AGTAGAGAGTGGTGCCTATAGT 57.200 45.455 0.00 0.00 0.00 2.12
2493 2882 2.634982 TCAAAAGCATTGCGGTCATC 57.365 45.000 2.38 0.00 0.00 2.92
2500 2889 9.109533 CAAGTATCAAAAATTCAAAAGCATTGC 57.890 29.630 0.00 0.00 0.00 3.56
2528 2918 7.929785 TCTCTAAGATTTCACTTTTGGTACGTT 59.070 33.333 0.00 0.00 0.00 3.99
2562 2959 3.380954 GGACGGAGGGAGTACTTTAGAAG 59.619 52.174 0.00 0.00 0.00 2.85
2565 2962 2.030371 GGGACGGAGGGAGTACTTTAG 58.970 57.143 0.00 0.00 0.00 1.85
2570 2967 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2574 2971 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2575 2972 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2576 2973 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
2577 2974 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
2578 2975 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
2579 2976 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
2600 2997 5.517411 CGTGACACTACACTACTGTCAAAAA 59.483 40.000 3.68 0.00 44.45 1.94
2601 2998 5.038683 CGTGACACTACACTACTGTCAAAA 58.961 41.667 3.68 0.00 44.45 2.44
2602 2999 4.096833 ACGTGACACTACACTACTGTCAAA 59.903 41.667 3.68 0.00 44.45 2.69
2603 3000 3.628942 ACGTGACACTACACTACTGTCAA 59.371 43.478 3.68 0.00 44.45 3.18
2604 3001 3.208594 ACGTGACACTACACTACTGTCA 58.791 45.455 3.68 0.00 41.54 3.58
2605 3002 3.663754 CGACGTGACACTACACTACTGTC 60.664 52.174 3.68 0.00 38.47 3.51
2606 3003 2.222678 CGACGTGACACTACACTACTGT 59.777 50.000 3.68 0.00 38.47 3.55
2607 3004 2.477754 TCGACGTGACACTACACTACTG 59.522 50.000 3.68 0.00 38.47 2.74
2608 3005 2.735663 CTCGACGTGACACTACACTACT 59.264 50.000 3.68 0.00 38.47 2.57
2609 3006 2.724228 GCTCGACGTGACACTACACTAC 60.724 54.545 3.68 0.00 38.47 2.73
2610 3007 1.462283 GCTCGACGTGACACTACACTA 59.538 52.381 3.68 0.00 38.47 2.74
2611 3008 0.237761 GCTCGACGTGACACTACACT 59.762 55.000 3.68 0.00 38.47 3.55
2612 3009 0.237761 AGCTCGACGTGACACTACAC 59.762 55.000 3.68 0.00 37.42 2.90
2613 3010 0.516001 GAGCTCGACGTGACACTACA 59.484 55.000 0.00 0.00 0.00 2.74
2614 3011 0.179194 GGAGCTCGACGTGACACTAC 60.179 60.000 7.83 0.00 0.00 2.73
2615 3012 0.321387 AGGAGCTCGACGTGACACTA 60.321 55.000 7.83 0.00 0.00 2.74
2616 3013 1.173444 AAGGAGCTCGACGTGACACT 61.173 55.000 7.83 0.00 0.00 3.55
2617 3014 0.318784 AAAGGAGCTCGACGTGACAC 60.319 55.000 7.83 0.00 0.00 3.67
2618 3015 1.068748 GTAAAGGAGCTCGACGTGACA 60.069 52.381 7.83 0.00 0.00 3.58
2619 3016 1.068748 TGTAAAGGAGCTCGACGTGAC 60.069 52.381 7.83 1.63 0.00 3.67
2620 3017 1.199327 CTGTAAAGGAGCTCGACGTGA 59.801 52.381 7.83 0.00 0.00 4.35
2621 3018 1.068472 ACTGTAAAGGAGCTCGACGTG 60.068 52.381 7.83 0.00 0.00 4.49
2622 3019 1.245732 ACTGTAAAGGAGCTCGACGT 58.754 50.000 7.83 0.00 0.00 4.34
2623 3020 2.477525 GGTACTGTAAAGGAGCTCGACG 60.478 54.545 7.83 0.00 0.00 5.12
2624 3021 2.159268 GGGTACTGTAAAGGAGCTCGAC 60.159 54.545 7.83 3.80 0.00 4.20
2625 3022 2.097825 GGGTACTGTAAAGGAGCTCGA 58.902 52.381 7.83 0.00 0.00 4.04
2958 3356 3.785859 GCCCAGCCCTGATCGACA 61.786 66.667 0.00 0.00 0.00 4.35
3216 3933 1.407329 CTCGCAAGACGTTCGTTCG 59.593 57.895 0.00 2.39 45.01 3.95
3352 4150 0.927767 ACATCTACTCCCTCCGTCCT 59.072 55.000 0.00 0.00 0.00 3.85
3584 4482 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3585 4483 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3586 4484 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3587 4485 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3588 4486 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3589 4487 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3590 4488 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3591 4489 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3592 4490 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3593 4491 1.133575 CACTACTCCCTCCGTCCCATA 60.134 57.143 0.00 0.00 0.00 2.74
3594 4492 0.397254 CACTACTCCCTCCGTCCCAT 60.397 60.000 0.00 0.00 0.00 4.00
3595 4493 1.000019 CACTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
3596 4494 0.614134 AACACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
3597 4495 1.264295 AAACACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3598 4496 3.698040 TGATAAACACTACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
3690 4588 1.318576 CGAGGCAAATCCATAACCCC 58.681 55.000 0.00 0.00 37.29 4.95
3717 4617 4.272018 GCAAGCAGAGGACTATACACATTG 59.728 45.833 0.00 0.00 0.00 2.82
3768 4668 5.105917 CCAGGCAAGGTTGTATATTTTTCGT 60.106 40.000 0.00 0.00 0.00 3.85
3893 4794 1.129251 CCTGCACTTATGTTCACTGCG 59.871 52.381 0.00 0.00 0.00 5.18
4107 5103 4.060205 GCCAAGAAACAATGATGCAAACT 58.940 39.130 0.00 0.00 0.00 2.66
4114 5110 7.391275 CCAAATAAAAGGCCAAGAAACAATGAT 59.609 33.333 5.01 0.00 0.00 2.45
4181 5177 7.285401 GGCAATTCTAGGTTATCCAAAGATCAA 59.715 37.037 0.00 0.00 33.67 2.57
4189 5185 4.229582 ACTTGGGCAATTCTAGGTTATCCA 59.770 41.667 0.00 0.00 35.89 3.41
4215 5211 4.176271 GCAAGGATGTTTTAACTGGCATC 58.824 43.478 0.00 0.00 37.56 3.91
4240 5236 2.039879 AGCGGTGGAAGACCTACAAAAT 59.960 45.455 0.00 0.00 43.55 1.82
4289 5285 5.824904 TTGCAGGATAAAGAGAAAGATGC 57.175 39.130 0.00 0.00 0.00 3.91
4292 5288 9.911788 ATAAGAATTGCAGGATAAAGAGAAAGA 57.088 29.630 0.00 0.00 0.00 2.52
4316 5312 6.327887 TGGTTGTGGCACATATAGGTAGAATA 59.672 38.462 22.73 0.00 44.52 1.75
4351 5347 5.352284 ACGTACCATTCAACATTGCAAAAA 58.648 33.333 1.71 0.00 0.00 1.94
4352 5348 4.938080 ACGTACCATTCAACATTGCAAAA 58.062 34.783 1.71 0.00 0.00 2.44
4353 5349 4.576216 ACGTACCATTCAACATTGCAAA 57.424 36.364 1.71 0.00 0.00 3.68
4354 5350 4.515567 TGTACGTACCATTCAACATTGCAA 59.484 37.500 22.43 0.00 0.00 4.08
4355 5351 4.065789 TGTACGTACCATTCAACATTGCA 58.934 39.130 22.43 0.00 0.00 4.08
4356 5352 4.671880 TGTACGTACCATTCAACATTGC 57.328 40.909 22.43 0.00 0.00 3.56
4372 5368 4.754372 ATGCAGATAAATGGCATGTACG 57.246 40.909 0.00 0.00 45.80 3.67
4395 5400 7.562135 TGAAAAACTAACAGTTAGAGGTCAGT 58.438 34.615 24.59 2.22 37.47 3.41
4400 5405 7.639945 CAACCTGAAAAACTAACAGTTAGAGG 58.360 38.462 24.59 20.10 37.47 3.69
4402 5407 6.826741 AGCAACCTGAAAAACTAACAGTTAGA 59.173 34.615 24.59 2.60 37.47 2.10
4403 5408 7.012421 AGAGCAACCTGAAAAACTAACAGTTAG 59.988 37.037 17.48 17.48 37.47 2.34
4404 5409 6.826741 AGAGCAACCTGAAAAACTAACAGTTA 59.173 34.615 0.00 0.00 37.47 2.24
4485 5490 7.172875 TGAAATGTCAATTTTATTGGCACTTGG 59.827 33.333 8.68 0.00 36.80 3.61
4585 5590 6.823182 CACATAACATGACCAGATAAAGACCA 59.177 38.462 0.00 0.00 0.00 4.02
4589 5594 6.317140 ACAGCACATAACATGACCAGATAAAG 59.683 38.462 0.00 0.00 0.00 1.85
4626 5631 6.605995 AGGCCACCCACTTTATTTAGAATAAC 59.394 38.462 5.01 0.00 0.00 1.89
4735 8291 5.109903 CGAATGGGGAAGTCTTACAGTAAG 58.890 45.833 13.53 13.53 37.13 2.34
4746 8302 2.119484 TTCACCGCGAATGGGGAAGT 62.119 55.000 8.23 0.00 46.40 3.01
4747 8303 1.376683 TTCACCGCGAATGGGGAAG 60.377 57.895 8.23 0.00 46.40 3.46
4758 8906 6.386654 TCATTTCTCCTTTAAAATTCACCGC 58.613 36.000 0.00 0.00 0.00 5.68
4844 8992 3.127250 TGGGGAAATGTAGGATAGGCAA 58.873 45.455 0.00 0.00 0.00 4.52
4846 8994 3.117663 TGTTGGGGAAATGTAGGATAGGC 60.118 47.826 0.00 0.00 0.00 3.93
4847 8995 4.788925 TGTTGGGGAAATGTAGGATAGG 57.211 45.455 0.00 0.00 0.00 2.57
4878 9039 2.092323 GACTAAATGAGGCCCACCAAC 58.908 52.381 0.00 0.00 39.06 3.77
4879 9040 1.707989 TGACTAAATGAGGCCCACCAA 59.292 47.619 0.00 0.00 39.06 3.67
4881 9042 2.507407 TTGACTAAATGAGGCCCACC 57.493 50.000 0.00 0.00 28.20 4.61
5000 9438 5.687285 GCAAAACCAAATACACAGAAGTCAG 59.313 40.000 0.00 0.00 0.00 3.51
5007 9445 4.202101 TGTCCTGCAAAACCAAATACACAG 60.202 41.667 0.00 0.00 0.00 3.66
5046 9539 3.281727 TGGTGATAAATCCCTCACTGC 57.718 47.619 3.06 0.00 41.21 4.40
5066 9559 8.745590 GGACTTACCATAACACACCAATATTTT 58.254 33.333 0.00 0.00 38.79 1.82
5245 9743 1.006832 CGGTGCTTCAAACGGATAGG 58.993 55.000 0.00 0.00 0.00 2.57
5262 9760 3.423154 GCAAGGAAGCACGGTCGG 61.423 66.667 0.00 0.00 0.00 4.79
5299 9797 7.521099 CGAGGTATAAGATTTCAGCATTGCAAT 60.521 37.037 11.91 5.99 0.00 3.56
5301 9799 5.237127 CGAGGTATAAGATTTCAGCATTGCA 59.763 40.000 11.91 0.00 0.00 4.08
5320 9818 6.099269 ACCATGTAAAATATACTCACCGAGGT 59.901 38.462 0.00 0.00 33.35 3.85
5436 10047 6.406624 CCAGCCTTCAAGATAAGCATGAATTT 60.407 38.462 0.00 0.00 29.15 1.82
5437 10048 5.068723 CCAGCCTTCAAGATAAGCATGAATT 59.931 40.000 0.00 0.00 29.15 2.17
5438 10049 4.583489 CCAGCCTTCAAGATAAGCATGAAT 59.417 41.667 0.00 0.00 29.15 2.57
5439 10050 3.949754 CCAGCCTTCAAGATAAGCATGAA 59.050 43.478 0.00 0.00 29.15 2.57
5467 10081 7.340256 GCCTACAAGTCCTAGATATAGAGCTA 58.660 42.308 0.00 0.00 0.00 3.32
5499 10113 1.208776 GGTACCCGCTAGTTCATTGGT 59.791 52.381 0.00 0.00 0.00 3.67
5508 10122 2.490991 GGCATTTTAGGTACCCGCTAG 58.509 52.381 8.74 0.00 0.00 3.42
5573 10187 8.786898 GCATGGAAAGACAAAGAGCATTATATA 58.213 33.333 0.00 0.00 0.00 0.86
5574 10188 7.504911 AGCATGGAAAGACAAAGAGCATTATAT 59.495 33.333 0.00 0.00 0.00 0.86
5575 10189 6.830324 AGCATGGAAAGACAAAGAGCATTATA 59.170 34.615 0.00 0.00 0.00 0.98
5576 10190 5.655532 AGCATGGAAAGACAAAGAGCATTAT 59.344 36.000 0.00 0.00 0.00 1.28
5588 10202 2.105006 TCTCTGCAGCATGGAAAGAC 57.895 50.000 9.47 0.00 34.45 3.01
5589 10203 2.640184 CATCTCTGCAGCATGGAAAGA 58.360 47.619 9.47 5.07 34.45 2.52
5990 10604 6.032094 GGAACATTCAATATTGTGCTCACAG 58.968 40.000 14.97 1.76 42.94 3.66
6046 14859 5.113502 ACTGTTTTAGCTGAGATGTTTGC 57.886 39.130 0.00 0.00 0.00 3.68
6065 14879 8.014322 TCTAAGCAAGTTAATAAACACGACTG 57.986 34.615 0.00 0.00 38.12 3.51
6076 14890 6.881065 TCAGTCAGCATTCTAAGCAAGTTAAT 59.119 34.615 0.00 0.00 0.00 1.40
6166 14980 4.150980 CCGTTTGAGCGTCAACTAATTACA 59.849 41.667 0.76 0.00 35.89 2.41
6232 15062 5.475909 TGAACTTACAGTCTCTACGACCAAT 59.524 40.000 0.00 0.00 43.91 3.16
6352 15182 5.487433 TGGTTGCATCATATATAGGGAACG 58.513 41.667 0.00 0.00 31.61 3.95
6378 15214 2.295909 ACCCAAAATCACACAACCATCG 59.704 45.455 0.00 0.00 0.00 3.84
6382 15218 3.058501 CGTCTACCCAAAATCACACAACC 60.059 47.826 0.00 0.00 0.00 3.77
6435 15276 4.119862 CGGAGGGAGTACAATACAACATG 58.880 47.826 0.00 0.00 0.00 3.21
6436 15277 3.773119 ACGGAGGGAGTACAATACAACAT 59.227 43.478 0.00 0.00 0.00 2.71
6440 15281 2.381911 GGACGGAGGGAGTACAATACA 58.618 52.381 0.00 0.00 0.00 2.29
6441 15282 1.685517 GGGACGGAGGGAGTACAATAC 59.314 57.143 0.00 0.00 0.00 1.89
6443 15284 0.042131 TGGGACGGAGGGAGTACAAT 59.958 55.000 0.00 0.00 0.00 2.71
6444 15285 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.000 0.00 0.00 0.00 2.41
6445 15286 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
6446 15287 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
6447 15288 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
6448 15289 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
6449 15290 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6450 15291 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
6451 15292 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
6452 15293 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
6453 15294 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
6454 15295 5.719563 TGATGCTCTTATATTATGGGACGGA 59.280 40.000 0.00 0.00 0.00 4.69
6455 15296 5.812642 GTGATGCTCTTATATTATGGGACGG 59.187 44.000 0.00 0.00 0.00 4.79
6456 15297 6.634805 AGTGATGCTCTTATATTATGGGACG 58.365 40.000 0.00 0.00 0.00 4.79
6457 15298 8.531982 TGTAGTGATGCTCTTATATTATGGGAC 58.468 37.037 0.00 0.00 0.00 4.46
6458 15299 8.664669 TGTAGTGATGCTCTTATATTATGGGA 57.335 34.615 0.00 0.00 0.00 4.37
6459 15300 9.725019 TTTGTAGTGATGCTCTTATATTATGGG 57.275 33.333 0.00 0.00 0.00 4.00
6464 15305 9.956720 GCATTTTTGTAGTGATGCTCTTATATT 57.043 29.630 0.00 0.00 41.16 1.28
6465 15306 9.123902 TGCATTTTTGTAGTGATGCTCTTATAT 57.876 29.630 8.41 0.00 43.89 0.86
6466 15307 8.504812 TGCATTTTTGTAGTGATGCTCTTATA 57.495 30.769 8.41 0.00 43.89 0.98
6467 15308 7.395190 TGCATTTTTGTAGTGATGCTCTTAT 57.605 32.000 8.41 0.00 43.89 1.73
6468 15309 6.816134 TGCATTTTTGTAGTGATGCTCTTA 57.184 33.333 8.41 0.00 43.89 2.10
6469 15310 5.710513 TGCATTTTTGTAGTGATGCTCTT 57.289 34.783 8.41 0.00 43.89 2.85
6470 15311 5.909621 ATGCATTTTTGTAGTGATGCTCT 57.090 34.783 0.00 0.00 43.89 4.09
6471 15312 7.168637 CCATAATGCATTTTTGTAGTGATGCTC 59.831 37.037 18.75 0.00 43.89 4.26
6472 15313 6.982141 CCATAATGCATTTTTGTAGTGATGCT 59.018 34.615 18.75 0.00 43.89 3.79
6473 15314 6.201425 CCCATAATGCATTTTTGTAGTGATGC 59.799 38.462 18.75 0.00 43.83 3.91
6474 15315 7.490840 TCCCATAATGCATTTTTGTAGTGATG 58.509 34.615 18.75 11.17 0.00 3.07
6475 15316 7.658525 TCCCATAATGCATTTTTGTAGTGAT 57.341 32.000 18.75 0.00 0.00 3.06
6476 15317 7.363705 CCTTCCCATAATGCATTTTTGTAGTGA 60.364 37.037 18.75 6.91 0.00 3.41
6477 15318 6.757947 CCTTCCCATAATGCATTTTTGTAGTG 59.242 38.462 18.75 5.71 0.00 2.74
6478 15319 6.667414 TCCTTCCCATAATGCATTTTTGTAGT 59.333 34.615 18.75 0.00 0.00 2.73
6479 15320 7.111247 TCCTTCCCATAATGCATTTTTGTAG 57.889 36.000 18.75 11.45 0.00 2.74
6480 15321 6.098124 CCTCCTTCCCATAATGCATTTTTGTA 59.902 38.462 18.75 0.00 0.00 2.41
6481 15322 5.104817 CCTCCTTCCCATAATGCATTTTTGT 60.105 40.000 18.75 0.00 0.00 2.83
6482 15323 5.362263 CCTCCTTCCCATAATGCATTTTTG 58.638 41.667 18.75 15.04 0.00 2.44
6483 15324 4.409901 CCCTCCTTCCCATAATGCATTTTT 59.590 41.667 18.75 2.82 0.00 1.94
6484 15325 3.969312 CCCTCCTTCCCATAATGCATTTT 59.031 43.478 18.75 6.94 0.00 1.82
6485 15326 3.207321 TCCCTCCTTCCCATAATGCATTT 59.793 43.478 18.75 2.72 0.00 2.32
6486 15327 2.791179 TCCCTCCTTCCCATAATGCATT 59.209 45.455 17.56 17.56 0.00 3.56
6487 15328 2.377869 CTCCCTCCTTCCCATAATGCAT 59.622 50.000 0.00 0.00 0.00 3.96
6488 15329 1.776667 CTCCCTCCTTCCCATAATGCA 59.223 52.381 0.00 0.00 0.00 3.96
6489 15330 1.777272 ACTCCCTCCTTCCCATAATGC 59.223 52.381 0.00 0.00 0.00 3.56
6490 15331 3.328050 GGTACTCCCTCCTTCCCATAATG 59.672 52.174 0.00 0.00 0.00 1.90
6491 15332 3.212397 AGGTACTCCCTCCTTCCCATAAT 59.788 47.826 0.00 0.00 40.71 1.28
6492 15333 2.595380 AGGTACTCCCTCCTTCCCATAA 59.405 50.000 0.00 0.00 40.71 1.90
6493 15334 2.233178 AGGTACTCCCTCCTTCCCATA 58.767 52.381 0.00 0.00 40.71 2.74
6494 15335 1.027815 AGGTACTCCCTCCTTCCCAT 58.972 55.000 0.00 0.00 40.71 4.00
6495 15336 2.511560 AGGTACTCCCTCCTTCCCA 58.488 57.895 0.00 0.00 40.71 4.37
6520 15361 6.801539 TCTTGGTTAAGCAATCTGTACAAG 57.198 37.500 19.63 5.80 33.82 3.16
6597 15438 6.530120 TCAGACAAGGCAGTAAATTCAGTAA 58.470 36.000 0.00 0.00 0.00 2.24
6638 15479 7.227711 CACATATTATACATTTTCCCACACGGA 59.772 37.037 0.00 0.00 39.68 4.69
6641 15482 7.014230 AGGCACATATTATACATTTTCCCACAC 59.986 37.037 0.00 0.00 0.00 3.82
6652 15493 9.461312 AGTTCAGAAAAAGGCACATATTATACA 57.539 29.630 0.00 0.00 0.00 2.29
6709 15555 9.676195 CATTTCAATTTGTATGTAGTTGACACA 57.324 29.630 0.00 0.00 42.17 3.72
6746 15607 2.477375 TGAATCGTGGCGTGTTTTAGTC 59.523 45.455 0.00 0.00 0.00 2.59
6751 15612 1.163420 TGCTGAATCGTGGCGTGTTT 61.163 50.000 0.00 0.00 0.00 2.83
6782 15644 9.952030 TCAGTGGCGATTAATATGGATATAAAA 57.048 29.630 0.00 0.00 0.00 1.52
6786 15648 8.027524 AGATCAGTGGCGATTAATATGGATAT 57.972 34.615 0.00 0.00 0.00 1.63
6800 15662 5.351465 ACAATTTTGTACTAGATCAGTGGCG 59.649 40.000 0.00 0.00 40.16 5.69
6825 15687 6.772716 CCATTATTAATTGACACTGGCCTAGT 59.227 38.462 3.32 2.75 41.36 2.57
6835 15697 7.590907 TCCCTCCAATCCATTATTAATTGACA 58.409 34.615 0.00 0.00 33.22 3.58
6840 15702 8.757307 TCTACTCCCTCCAATCCATTATTAAT 57.243 34.615 0.00 0.00 0.00 1.40
6847 15709 3.736094 TGTTCTACTCCCTCCAATCCAT 58.264 45.455 0.00 0.00 0.00 3.41
6848 15710 3.199442 TGTTCTACTCCCTCCAATCCA 57.801 47.619 0.00 0.00 0.00 3.41
6849 15711 4.779993 AATGTTCTACTCCCTCCAATCC 57.220 45.455 0.00 0.00 0.00 3.01
6850 15712 9.847224 TTATAAAATGTTCTACTCCCTCCAATC 57.153 33.333 0.00 0.00 0.00 2.67
6853 15715 9.847224 GAATTATAAAATGTTCTACTCCCTCCA 57.153 33.333 0.00 0.00 0.00 3.86
6866 15728 9.449719 ACTTCCTCGTTCTGAATTATAAAATGT 57.550 29.630 0.00 0.00 0.00 2.71
6880 15742 4.289238 TGAGAGAGTACTTCCTCGTTCT 57.711 45.455 15.97 0.10 36.56 3.01
6881 15743 4.879545 AGATGAGAGAGTACTTCCTCGTTC 59.120 45.833 16.43 15.07 36.56 3.95
6909 15771 9.225682 ACTCCCTCTGAAAATTAATATAGGACA 57.774 33.333 0.00 0.00 0.00 4.02
6925 16872 3.574396 CACTTGACAAGTACTCCCTCTGA 59.426 47.826 20.17 0.00 40.46 3.27
6930 16877 1.809684 GCCACTTGACAAGTACTCCC 58.190 55.000 20.17 4.24 40.46 4.30
6953 16900 5.370584 TCATCTCTCACCCCAATATTCATGT 59.629 40.000 0.00 0.00 0.00 3.21
6998 16946 1.872197 TAAACCTTGCGTGCATGGGC 61.872 55.000 25.06 4.18 43.17 5.36
7017 16965 0.979665 CCGGCAGGATCATAGGATGT 59.020 55.000 0.00 0.00 41.02 3.06
7062 17011 2.593346 ACAGCTCGACCATTGATCTC 57.407 50.000 0.00 0.00 0.00 2.75
7066 17015 3.003378 CGATAGTACAGCTCGACCATTGA 59.997 47.826 6.02 0.00 34.41 2.57
7083 17032 3.181534 CGCATTATTTGTACGCCCGATAG 60.182 47.826 0.00 0.00 0.00 2.08
7092 17043 7.095774 ACGATGAAGGATACGCATTATTTGTAC 60.096 37.037 0.00 0.00 46.39 2.90
7094 17045 5.758296 ACGATGAAGGATACGCATTATTTGT 59.242 36.000 0.00 0.00 46.39 2.83
7103 17054 1.328439 CGCTACGATGAAGGATACGC 58.672 55.000 0.00 0.00 46.39 4.42
7104 17055 2.682952 ACGCTACGATGAAGGATACG 57.317 50.000 0.00 0.00 46.39 3.06
7105 17056 3.501445 ACCTACGCTACGATGAAGGATAC 59.499 47.826 0.00 0.00 0.00 2.24
7106 17057 3.501062 CACCTACGCTACGATGAAGGATA 59.499 47.826 0.00 0.00 0.00 2.59
7107 17058 2.293677 CACCTACGCTACGATGAAGGAT 59.706 50.000 0.00 0.00 0.00 3.24
7109 17060 1.269102 CCACCTACGCTACGATGAAGG 60.269 57.143 0.00 0.00 0.00 3.46
7111 17062 0.742505 CCCACCTACGCTACGATGAA 59.257 55.000 0.00 0.00 0.00 2.57
7112 17063 0.394762 ACCCACCTACGCTACGATGA 60.395 55.000 0.00 0.00 0.00 2.92
7114 17065 1.442526 CGACCCACCTACGCTACGAT 61.443 60.000 0.00 0.00 0.00 3.73
7115 17066 2.108514 CGACCCACCTACGCTACGA 61.109 63.158 0.00 0.00 0.00 3.43
7116 17067 2.315038 GACGACCCACCTACGCTACG 62.315 65.000 0.00 0.00 0.00 3.51
7117 17068 1.028868 AGACGACCCACCTACGCTAC 61.029 60.000 0.00 0.00 0.00 3.58
7118 17069 0.322816 AAGACGACCCACCTACGCTA 60.323 55.000 0.00 0.00 0.00 4.26
7119 17070 1.593296 GAAGACGACCCACCTACGCT 61.593 60.000 0.00 0.00 0.00 5.07
7120 17071 1.153881 GAAGACGACCCACCTACGC 60.154 63.158 0.00 0.00 0.00 4.42
7121 17072 1.509923 GGAAGACGACCCACCTACG 59.490 63.158 0.00 0.00 0.00 3.51
7132 17083 0.459759 GCCTAGGGTTTCGGAAGACG 60.460 60.000 11.72 0.00 41.84 4.18
7194 17145 4.361971 AGGAGAGGGTGCGACCGA 62.362 66.667 0.00 0.00 39.83 4.69
7206 17157 1.610327 CCGGAGACCAGAGAGGAGA 59.390 63.158 0.00 0.00 41.22 3.71
7257 17208 0.104120 GGTTTTTGCCGCCAAGAACT 59.896 50.000 11.53 0.00 42.51 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.