Multiple sequence alignment - TraesCS5D01G534000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G534000 chr5D 100.000 6293 0 0 1 6293 548349025 548355317 0.000000e+00 11622.0
1 TraesCS5D01G534000 chr5D 96.714 213 5 2 1260 1471 484573599 484573810 2.790000e-93 353.0
2 TraesCS5D01G534000 chr5D 96.209 211 6 2 1260 1469 98272142 98271933 1.680000e-90 344.0
3 TraesCS5D01G534000 chr5D 95.775 213 8 1 1260 1471 393806968 393806756 6.040000e-90 342.0
4 TraesCS5D01G534000 chr5D 95.261 211 9 1 1260 1469 412323312 412323522 3.640000e-87 333.0
5 TraesCS5D01G534000 chr5B 89.040 4179 239 98 1989 6065 692561578 692565639 0.000000e+00 4977.0
6 TraesCS5D01G534000 chr5B 88.120 1229 71 24 57 1255 692559931 692561114 0.000000e+00 1391.0
7 TraesCS5D01G534000 chr5B 93.932 412 24 1 1469 1880 692561112 692561522 6.930000e-174 621.0
8 TraesCS5D01G534000 chr5B 77.632 228 18 14 6083 6289 692566418 692566633 2.400000e-19 108.0
9 TraesCS5D01G534000 chr4A 93.463 1545 46 11 2706 4247 619186054 619187546 0.000000e+00 2242.0
10 TraesCS5D01G534000 chr4A 88.778 1711 83 50 4303 5971 619187539 619189182 0.000000e+00 1995.0
11 TraesCS5D01G534000 chr4A 88.723 1206 103 20 18 1201 619183368 619184562 0.000000e+00 1443.0
12 TraesCS5D01G534000 chr4A 86.176 1237 117 27 1472 2683 619184644 619185851 0.000000e+00 1288.0
13 TraesCS5D01G534000 chr4A 81.057 227 22 8 6080 6291 619189724 619189944 1.820000e-35 161.0
14 TraesCS5D01G534000 chr4A 100.000 37 0 0 5971 6007 619189200 619189236 1.130000e-07 69.4
15 TraesCS5D01G534000 chr3B 91.646 395 27 5 1969 2360 103247060 103247451 5.550000e-150 542.0
16 TraesCS5D01G534000 chr3B 76.486 370 52 21 2218 2570 131943682 131943331 1.080000e-37 169.0
17 TraesCS5D01G534000 chr7B 97.156 211 4 2 1260 1469 531664002 531663793 7.760000e-94 355.0
18 TraesCS5D01G534000 chr4D 95.327 214 9 1 1260 1472 497016851 497017064 7.810000e-89 339.0
19 TraesCS5D01G534000 chr4B 95.327 214 8 2 1260 1471 667403943 667403730 7.810000e-89 339.0
20 TraesCS5D01G534000 chr1D 95.735 211 7 2 1260 1469 48513548 48513339 7.810000e-89 339.0
21 TraesCS5D01G534000 chr1D 95.755 212 6 3 1260 1470 140226431 140226222 7.810000e-89 339.0
22 TraesCS5D01G534000 chr2A 81.735 219 26 9 2363 2571 332147985 332147771 3.020000e-38 171.0
23 TraesCS5D01G534000 chr2B 76.404 356 47 20 2233 2571 198993789 198993454 2.350000e-34 158.0
24 TraesCS5D01G534000 chr7D 82.759 174 21 8 2405 2571 307322682 307322853 5.080000e-31 147.0
25 TraesCS5D01G534000 chr6D 85.526 76 8 2 1092 1167 423441979 423442051 6.770000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G534000 chr5D 548349025 548355317 6292 False 11622.000000 11622 100.0000 1 6293 1 chr5D.!!$F3 6292
1 TraesCS5D01G534000 chr5B 692559931 692566633 6702 False 1774.250000 4977 87.1810 57 6289 4 chr5B.!!$F1 6232
2 TraesCS5D01G534000 chr4A 619183368 619189944 6576 False 1199.733333 2242 89.6995 18 6291 6 chr4A.!!$F1 6273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 111 0.179094 ACTGATTCCGCCGCGAATTA 60.179 50.000 15.93 8.07 32.56 1.40 F
1304 1376 0.110678 GAATAAGCTGCCCCCTACCC 59.889 60.000 0.00 0.00 0.00 3.69 F
1434 1506 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.000 0.00 0.00 45.86 4.08 F
1435 1507 0.183492 TAGGGGGCAGCTTATTGCAG 59.817 55.000 0.00 0.00 45.86 4.41 F
1465 1537 0.752658 AAGCCACCAAAAGAACTGCC 59.247 50.000 0.00 0.00 0.00 4.85 F
1853 1935 0.871057 GCAATTCCTATCTGCGCTCC 59.129 55.000 9.73 0.00 0.00 4.70 F
2834 3119 2.027385 GCTTCCCCTTATGAGCCTTTG 58.973 52.381 0.00 0.00 0.00 2.77 F
4281 4624 0.836606 TGTTCTGTGAGGGCAGTGAA 59.163 50.000 0.00 0.00 37.70 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1487 0.106719 TGCAATAAGCTGCCCCCTAC 60.107 55.000 0.00 0.0 45.94 3.18 R
2813 3098 0.181350 AAGGCTCATAAGGGGAAGCG 59.819 55.000 0.00 0.0 0.00 4.68 R
3338 3624 0.469892 AACTTTGCCCCAAGACCAGG 60.470 55.000 0.00 0.0 0.00 4.45 R
3684 3972 3.254060 CCGTAGACAACTCAATGTGGAG 58.746 50.000 0.00 0.0 40.79 3.86 R
3783 4071 5.028549 TCATCTTTGAGTAGGAAGCATCC 57.971 43.478 0.00 0.0 46.98 3.51 R
4057 4361 1.670811 GTGCAGGTTCAATATGACCGG 59.329 52.381 0.00 0.0 0.00 5.28 R
5103 5478 0.737219 GCAATGATGAGTGGAGTGGC 59.263 55.000 0.00 0.0 0.00 5.01 R
6231 7649 0.105408 AGTTTTACGCCCGTGTCACT 59.895 50.000 3.22 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.201980 GGTTTGTTAGAGTTTGCCTCGTTT 60.202 41.667 0.00 0.00 45.44 3.60
43 44 2.875933 TGTTAGAGTTTGCCTCGTTTGG 59.124 45.455 0.00 0.00 45.44 3.28
91 94 1.398390 GGATTTCGCTGCGATTCAACT 59.602 47.619 26.51 4.70 35.23 3.16
103 106 1.705337 ATTCAACTGATTCCGCCGCG 61.705 55.000 5.59 5.59 0.00 6.46
108 111 0.179094 ACTGATTCCGCCGCGAATTA 60.179 50.000 15.93 8.07 32.56 1.40
109 112 1.148310 CTGATTCCGCCGCGAATTAT 58.852 50.000 15.93 1.43 32.56 1.28
114 117 1.300620 CCGCCGCGAATTATGGAGA 60.301 57.895 15.93 0.00 0.00 3.71
117 120 0.951040 GCCGCGAATTATGGAGAGGG 60.951 60.000 8.23 0.00 0.00 4.30
121 124 3.306780 CCGCGAATTATGGAGAGGGTAAT 60.307 47.826 8.23 0.00 0.00 1.89
124 127 6.183360 CCGCGAATTATGGAGAGGGTAATATA 60.183 42.308 8.23 0.00 0.00 0.86
171 177 3.942130 GGCTCTGCCTGTTTTAAATGT 57.058 42.857 0.73 0.00 46.69 2.71
208 214 2.054232 TCGTAGCCTTCTCCTCGAAT 57.946 50.000 0.00 0.00 0.00 3.34
233 239 2.753319 GAGTAGATCTCTGGCCCCC 58.247 63.158 0.00 0.00 39.86 5.40
299 315 2.184322 GCGCGGAAGTCATCTCCA 59.816 61.111 8.83 0.00 0.00 3.86
322 338 9.401058 TCCACCATTATTTTGTTGATTTTGTTT 57.599 25.926 0.00 0.00 0.00 2.83
365 382 3.468770 TGTTTTTCGAGGATCCGTTTCA 58.531 40.909 5.98 0.00 0.00 2.69
375 392 4.065789 AGGATCCGTTTCACTTTTGTCTC 58.934 43.478 5.98 0.00 0.00 3.36
405 427 4.220602 GCCACTGTTCCATCCTTTATTTGT 59.779 41.667 0.00 0.00 0.00 2.83
586 627 8.706035 GTGTGCTCGATTTACTTTACTTTCTTA 58.294 33.333 0.00 0.00 0.00 2.10
602 643 5.353678 ACTTTCTTAGCTGCATCTGTTCATC 59.646 40.000 1.02 0.00 0.00 2.92
609 650 1.341187 TGCATCTGTTCATCCATGGCA 60.341 47.619 6.96 0.00 0.00 4.92
611 652 1.337071 CATCTGTTCATCCATGGCAGC 59.663 52.381 6.96 0.00 34.04 5.25
649 690 4.380867 CGCTAAGGGATGCAATTTTGTCTT 60.381 41.667 0.00 0.00 0.00 3.01
670 713 5.650266 TCTTCAGTCTTGAGAGTCAGATACC 59.350 44.000 0.00 0.00 34.15 2.73
680 723 3.118956 AGAGTCAGATACCGAGGCAAAAG 60.119 47.826 0.00 0.00 0.00 2.27
689 732 3.421844 ACCGAGGCAAAAGCTCTTTTAT 58.578 40.909 7.22 0.00 40.45 1.40
694 740 5.220567 CGAGGCAAAAGCTCTTTTATCTCTC 60.221 44.000 20.94 16.36 40.45 3.20
701 747 4.870363 AGCTCTTTTATCTCTCGCAGATC 58.130 43.478 0.37 0.00 41.39 2.75
788 834 1.601903 TGCGTTGCTGAGTTTTACTGG 59.398 47.619 0.00 0.00 0.00 4.00
906 952 0.247974 CGAGCGAACCTACTACCGTG 60.248 60.000 0.00 0.00 0.00 4.94
912 958 2.681848 CGAACCTACTACCGTGATGAGT 59.318 50.000 0.00 0.00 0.00 3.41
933 979 2.203437 AAAGGTGGTGCGGGTTCC 60.203 61.111 0.00 0.00 0.00 3.62
1016 1062 0.610232 ACCATGGAAAGGTGAGCTGC 60.610 55.000 21.47 0.00 38.13 5.25
1022 1069 3.495331 TGGAAAGGTGAGCTGCAATTAA 58.505 40.909 1.02 0.00 0.00 1.40
1046 1093 5.476752 TTTGCCCATTATAAATTTTGCGC 57.523 34.783 0.00 0.00 0.00 6.09
1060 1108 2.202349 GCGCCGCATGAACAGTTC 60.202 61.111 3.15 6.32 0.00 3.01
1065 1113 1.400242 GCCGCATGAACAGTTCTTGAC 60.400 52.381 26.00 17.73 37.08 3.18
1176 1224 8.981647 AGAAACAAATGAAATTGTAAGTGCATC 58.018 29.630 0.00 0.00 42.49 3.91
1185 1233 5.633830 ATTGTAAGTGCATCCTTGTCAAG 57.366 39.130 5.53 5.53 0.00 3.02
1205 1261 3.511477 AGGGACTCTGCTCTCTTGTAAA 58.489 45.455 0.00 0.00 0.00 2.01
1257 1329 8.705594 TCTTTATCTATCCTGTGACTTTTAGGG 58.294 37.037 0.00 0.00 32.39 3.53
1258 1330 4.755266 TCTATCCTGTGACTTTTAGGGC 57.245 45.455 0.00 0.00 32.39 5.19
1259 1331 2.808906 ATCCTGTGACTTTTAGGGCC 57.191 50.000 0.00 0.00 32.39 5.80
1260 1332 1.742308 TCCTGTGACTTTTAGGGCCT 58.258 50.000 12.58 12.58 32.39 5.19
1261 1333 2.062636 TCCTGTGACTTTTAGGGCCTT 58.937 47.619 13.45 0.00 32.39 4.35
1262 1334 2.445525 TCCTGTGACTTTTAGGGCCTTT 59.554 45.455 13.45 0.00 32.39 3.11
1263 1335 3.117284 TCCTGTGACTTTTAGGGCCTTTT 60.117 43.478 13.45 0.00 32.39 2.27
1264 1336 3.005791 CCTGTGACTTTTAGGGCCTTTTG 59.994 47.826 13.45 2.40 0.00 2.44
1265 1337 2.364002 TGTGACTTTTAGGGCCTTTTGC 59.636 45.455 13.45 0.00 40.16 3.68
1266 1338 2.628178 GTGACTTTTAGGGCCTTTTGCT 59.372 45.455 13.45 0.00 40.92 3.91
1267 1339 3.824443 GTGACTTTTAGGGCCTTTTGCTA 59.176 43.478 13.45 0.00 40.92 3.49
1268 1340 4.079253 TGACTTTTAGGGCCTTTTGCTAG 58.921 43.478 13.45 3.82 40.92 3.42
1269 1341 2.826128 ACTTTTAGGGCCTTTTGCTAGC 59.174 45.455 13.45 8.10 40.92 3.42
1270 1342 2.899303 TTTAGGGCCTTTTGCTAGCT 57.101 45.000 13.45 0.00 40.92 3.32
1271 1343 2.899303 TTAGGGCCTTTTGCTAGCTT 57.101 45.000 13.45 0.00 40.92 3.74
1272 1344 2.899303 TAGGGCCTTTTGCTAGCTTT 57.101 45.000 13.45 0.00 40.92 3.51
1273 1345 2.015456 AGGGCCTTTTGCTAGCTTTT 57.985 45.000 17.23 0.00 40.92 2.27
1274 1346 2.329267 AGGGCCTTTTGCTAGCTTTTT 58.671 42.857 17.23 0.00 40.92 1.94
1294 1366 6.515272 TTTTTGGGCTTCTAGAATAAGCTG 57.485 37.500 13.28 0.00 46.81 4.24
1295 1367 3.199880 TGGGCTTCTAGAATAAGCTGC 57.800 47.619 13.28 8.77 46.81 5.25
1296 1368 2.158755 TGGGCTTCTAGAATAAGCTGCC 60.159 50.000 18.36 18.36 46.81 4.85
1297 1369 2.499197 GGCTTCTAGAATAAGCTGCCC 58.501 52.381 16.58 3.50 46.81 5.36
1298 1370 2.499197 GCTTCTAGAATAAGCTGCCCC 58.501 52.381 5.44 0.00 44.75 5.80
1299 1371 2.812243 GCTTCTAGAATAAGCTGCCCCC 60.812 54.545 5.44 0.00 44.75 5.40
1300 1372 2.496679 TCTAGAATAAGCTGCCCCCT 57.503 50.000 0.00 0.00 0.00 4.79
1301 1373 3.630625 TCTAGAATAAGCTGCCCCCTA 57.369 47.619 0.00 0.00 0.00 3.53
1302 1374 3.240302 TCTAGAATAAGCTGCCCCCTAC 58.760 50.000 0.00 0.00 0.00 3.18
1303 1375 1.141185 AGAATAAGCTGCCCCCTACC 58.859 55.000 0.00 0.00 0.00 3.18
1304 1376 0.110678 GAATAAGCTGCCCCCTACCC 59.889 60.000 0.00 0.00 0.00 3.69
1305 1377 0.626277 AATAAGCTGCCCCCTACCCA 60.626 55.000 0.00 0.00 0.00 4.51
1306 1378 1.062488 ATAAGCTGCCCCCTACCCAG 61.062 60.000 0.00 0.00 0.00 4.45
1309 1381 3.017581 CTGCCCCCTACCCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
1310 1382 1.692749 CTGCCCCCTACCCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
1311 1383 1.005556 TGCCCCCTACCCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
1312 1384 0.626277 TGCCCCCTACCCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
1313 1385 0.110678 GCCCCCTACCCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
1314 1386 1.821088 CCCCCTACCCAGCTTATTCT 58.179 55.000 0.00 0.00 0.00 2.40
1315 1387 2.986050 CCCCCTACCCAGCTTATTCTA 58.014 52.381 0.00 0.00 0.00 2.10
1316 1388 2.907042 CCCCCTACCCAGCTTATTCTAG 59.093 54.545 0.00 0.00 0.00 2.43
1317 1389 3.439558 CCCCCTACCCAGCTTATTCTAGA 60.440 52.174 0.00 0.00 0.00 2.43
1318 1390 4.232091 CCCCTACCCAGCTTATTCTAGAA 58.768 47.826 7.82 7.82 0.00 2.10
1319 1391 4.284746 CCCCTACCCAGCTTATTCTAGAAG 59.715 50.000 11.53 0.00 0.00 2.85
1326 1398 3.560636 GCTTATTCTAGAAGCCCACCA 57.439 47.619 11.53 0.00 42.90 4.17
1327 1399 3.886123 GCTTATTCTAGAAGCCCACCAA 58.114 45.455 11.53 0.00 42.90 3.67
1328 1400 4.270008 GCTTATTCTAGAAGCCCACCAAA 58.730 43.478 11.53 0.00 42.90 3.28
1329 1401 4.705023 GCTTATTCTAGAAGCCCACCAAAA 59.295 41.667 11.53 0.00 42.90 2.44
1330 1402 5.360999 GCTTATTCTAGAAGCCCACCAAAAT 59.639 40.000 11.53 0.00 42.90 1.82
1331 1403 6.127338 GCTTATTCTAGAAGCCCACCAAAATT 60.127 38.462 11.53 0.00 42.90 1.82
1332 1404 7.579531 GCTTATTCTAGAAGCCCACCAAAATTT 60.580 37.037 11.53 0.00 42.90 1.82
1333 1405 6.686484 ATTCTAGAAGCCCACCAAAATTTT 57.314 33.333 11.53 0.00 0.00 1.82
1334 1406 5.722021 TCTAGAAGCCCACCAAAATTTTC 57.278 39.130 0.00 0.00 0.00 2.29
1335 1407 5.393866 TCTAGAAGCCCACCAAAATTTTCT 58.606 37.500 0.00 0.00 0.00 2.52
1336 1408 5.838521 TCTAGAAGCCCACCAAAATTTTCTT 59.161 36.000 0.00 0.30 0.00 2.52
1337 1409 5.372343 AGAAGCCCACCAAAATTTTCTTT 57.628 34.783 0.00 0.00 0.00 2.52
1338 1410 5.754782 AGAAGCCCACCAAAATTTTCTTTT 58.245 33.333 0.00 0.00 0.00 2.27
1339 1411 6.186957 AGAAGCCCACCAAAATTTTCTTTTT 58.813 32.000 0.00 0.00 0.00 1.94
1340 1412 7.342581 AGAAGCCCACCAAAATTTTCTTTTTA 58.657 30.769 0.00 0.00 0.00 1.52
1341 1413 7.498900 AGAAGCCCACCAAAATTTTCTTTTTAG 59.501 33.333 0.00 0.00 0.00 1.85
1342 1414 6.894682 AGCCCACCAAAATTTTCTTTTTAGA 58.105 32.000 0.00 0.00 0.00 2.10
1343 1415 7.342581 AGCCCACCAAAATTTTCTTTTTAGAA 58.657 30.769 0.00 0.00 0.00 2.10
1344 1416 7.498900 AGCCCACCAAAATTTTCTTTTTAGAAG 59.501 33.333 0.00 0.00 0.00 2.85
1345 1417 7.639039 CCCACCAAAATTTTCTTTTTAGAAGC 58.361 34.615 0.00 0.00 0.00 3.86
1346 1418 7.255104 CCCACCAAAATTTTCTTTTTAGAAGCC 60.255 37.037 0.00 0.00 0.00 4.35
1347 1419 7.498900 CCACCAAAATTTTCTTTTTAGAAGCCT 59.501 33.333 0.00 0.00 0.00 4.58
1348 1420 9.541143 CACCAAAATTTTCTTTTTAGAAGCCTA 57.459 29.630 0.00 0.00 0.00 3.93
1349 1421 9.542462 ACCAAAATTTTCTTTTTAGAAGCCTAC 57.458 29.630 0.00 0.00 0.00 3.18
1350 1422 9.764363 CCAAAATTTTCTTTTTAGAAGCCTACT 57.236 29.630 0.00 0.00 0.00 2.57
1356 1428 9.841295 TTTTCTTTTTAGAAGCCTACTAGTCAA 57.159 29.630 0.00 0.00 0.00 3.18
1357 1429 9.490379 TTTCTTTTTAGAAGCCTACTAGTCAAG 57.510 33.333 0.00 0.00 0.00 3.02
1358 1430 8.191534 TCTTTTTAGAAGCCTACTAGTCAAGT 57.808 34.615 0.00 0.00 42.62 3.16
1359 1431 8.305317 TCTTTTTAGAAGCCTACTAGTCAAGTC 58.695 37.037 0.00 0.00 39.80 3.01
1360 1432 7.778185 TTTTAGAAGCCTACTAGTCAAGTCT 57.222 36.000 0.00 0.00 39.80 3.24
1361 1433 7.778185 TTTAGAAGCCTACTAGTCAAGTCTT 57.222 36.000 0.00 0.00 39.80 3.01
1362 1434 8.874744 TTTAGAAGCCTACTAGTCAAGTCTTA 57.125 34.615 0.00 0.00 39.80 2.10
1363 1435 8.874744 TTAGAAGCCTACTAGTCAAGTCTTAA 57.125 34.615 0.00 0.00 39.80 1.85
1364 1436 7.160547 AGAAGCCTACTAGTCAAGTCTTAAC 57.839 40.000 0.00 0.00 39.80 2.01
1365 1437 6.949463 AGAAGCCTACTAGTCAAGTCTTAACT 59.051 38.462 0.00 0.00 39.80 2.24
1366 1438 8.108364 AGAAGCCTACTAGTCAAGTCTTAACTA 58.892 37.037 0.00 0.00 39.80 2.24
1367 1439 7.628769 AGCCTACTAGTCAAGTCTTAACTAC 57.371 40.000 0.00 0.00 39.80 2.73
1368 1440 7.404481 AGCCTACTAGTCAAGTCTTAACTACT 58.596 38.462 0.00 0.00 39.80 2.57
1369 1441 8.547173 AGCCTACTAGTCAAGTCTTAACTACTA 58.453 37.037 0.00 0.00 39.80 1.82
1370 1442 8.829612 GCCTACTAGTCAAGTCTTAACTACTAG 58.170 40.741 0.00 15.35 43.88 2.57
1371 1443 9.328845 CCTACTAGTCAAGTCTTAACTACTAGG 57.671 40.741 18.40 15.19 43.22 3.02
1372 1444 7.628769 ACTAGTCAAGTCTTAACTACTAGGC 57.371 40.000 18.40 0.00 43.22 3.93
1373 1445 7.404481 ACTAGTCAAGTCTTAACTACTAGGCT 58.596 38.462 18.40 0.00 43.22 4.58
1374 1446 7.889600 ACTAGTCAAGTCTTAACTACTAGGCTT 59.110 37.037 18.40 0.00 43.22 4.35
1375 1447 7.160547 AGTCAAGTCTTAACTACTAGGCTTC 57.839 40.000 0.00 0.00 34.27 3.86
1376 1448 6.949463 AGTCAAGTCTTAACTACTAGGCTTCT 59.051 38.462 0.00 0.00 34.27 2.85
1377 1449 8.108364 AGTCAAGTCTTAACTACTAGGCTTCTA 58.892 37.037 0.00 0.00 34.27 2.10
1378 1450 8.738106 GTCAAGTCTTAACTACTAGGCTTCTAA 58.262 37.037 0.00 0.00 34.27 2.10
1379 1451 9.305555 TCAAGTCTTAACTACTAGGCTTCTAAA 57.694 33.333 0.00 0.00 34.27 1.85
1380 1452 9.924650 CAAGTCTTAACTACTAGGCTTCTAAAA 57.075 33.333 0.00 0.00 34.27 1.52
1411 1483 7.905604 ATTTGTTTGGGCTTCTAAAATAAGC 57.094 32.000 0.00 0.00 46.90 3.09
1412 1484 6.664428 TTGTTTGGGCTTCTAAAATAAGCT 57.336 33.333 7.65 0.00 46.81 3.74
1413 1485 6.024552 TGTTTGGGCTTCTAAAATAAGCTG 57.975 37.500 7.65 0.00 46.81 4.24
1414 1486 5.047377 TGTTTGGGCTTCTAAAATAAGCTGG 60.047 40.000 7.65 0.00 46.81 4.85
1415 1487 3.631250 TGGGCTTCTAAAATAAGCTGGG 58.369 45.455 7.65 0.00 46.81 4.45
1416 1488 3.011257 TGGGCTTCTAAAATAAGCTGGGT 59.989 43.478 7.65 0.00 46.81 4.51
1417 1489 4.228666 TGGGCTTCTAAAATAAGCTGGGTA 59.771 41.667 7.65 0.00 46.81 3.69
1418 1490 4.822350 GGGCTTCTAAAATAAGCTGGGTAG 59.178 45.833 7.65 0.00 46.81 3.18
1419 1491 4.822350 GGCTTCTAAAATAAGCTGGGTAGG 59.178 45.833 7.65 0.00 46.81 3.18
1420 1492 4.822350 GCTTCTAAAATAAGCTGGGTAGGG 59.178 45.833 0.00 0.00 44.75 3.53
1421 1493 5.377478 CTTCTAAAATAAGCTGGGTAGGGG 58.623 45.833 0.00 0.00 0.00 4.79
1422 1494 3.720002 TCTAAAATAAGCTGGGTAGGGGG 59.280 47.826 0.00 0.00 0.00 5.40
1423 1495 0.556258 AAATAAGCTGGGTAGGGGGC 59.444 55.000 0.00 0.00 0.00 5.80
1424 1496 0.626277 AATAAGCTGGGTAGGGGGCA 60.626 55.000 0.00 0.00 0.00 5.36
1425 1497 1.062488 ATAAGCTGGGTAGGGGGCAG 61.062 60.000 0.00 0.00 0.00 4.85
1428 1500 3.017581 CTGGGTAGGGGGCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
1429 1501 1.692749 CTGGGTAGGGGGCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
1430 1502 1.005556 TGGGTAGGGGGCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
1431 1503 0.626277 TGGGTAGGGGGCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
1432 1504 0.178990 GGGTAGGGGGCAGCTTATTG 60.179 60.000 0.00 0.00 0.00 1.90
1433 1505 0.823769 GGTAGGGGGCAGCTTATTGC 60.824 60.000 0.00 0.00 43.34 3.56
1434 1506 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.000 0.00 0.00 45.86 4.08
1435 1507 0.183492 TAGGGGGCAGCTTATTGCAG 59.817 55.000 0.00 0.00 45.86 4.41
1457 1529 5.897377 GCTTATTCTAGAAGCCACCAAAA 57.103 39.130 11.53 0.00 42.90 2.44
1458 1530 5.884771 GCTTATTCTAGAAGCCACCAAAAG 58.115 41.667 11.53 5.59 42.90 2.27
1459 1531 5.648092 GCTTATTCTAGAAGCCACCAAAAGA 59.352 40.000 11.53 0.00 42.90 2.52
1460 1532 6.151144 GCTTATTCTAGAAGCCACCAAAAGAA 59.849 38.462 11.53 0.00 42.90 2.52
1461 1533 5.966742 ATTCTAGAAGCCACCAAAAGAAC 57.033 39.130 11.53 0.00 0.00 3.01
1462 1534 4.706842 TCTAGAAGCCACCAAAAGAACT 57.293 40.909 0.00 0.00 0.00 3.01
1463 1535 4.389374 TCTAGAAGCCACCAAAAGAACTG 58.611 43.478 0.00 0.00 0.00 3.16
1464 1536 1.683385 AGAAGCCACCAAAAGAACTGC 59.317 47.619 0.00 0.00 0.00 4.40
1465 1537 0.752658 AAGCCACCAAAAGAACTGCC 59.247 50.000 0.00 0.00 0.00 4.85
1466 1538 1.115326 AGCCACCAAAAGAACTGCCC 61.115 55.000 0.00 0.00 0.00 5.36
1467 1539 2.049435 CCACCAAAAGAACTGCCCC 58.951 57.895 0.00 0.00 0.00 5.80
1603 1681 7.169476 GTCTGCGAGAAGTAAAGGTAATATTCC 59.831 40.741 0.00 0.00 0.00 3.01
1638 1716 7.707035 GGGTATATCATCGTATCTGATCAAACC 59.293 40.741 0.00 0.00 35.12 3.27
1643 1721 4.801330 TCGTATCTGATCAAACCACACT 57.199 40.909 0.00 0.00 0.00 3.55
1651 1729 3.446873 TGATCAAACCACACTGTTTTGCT 59.553 39.130 0.00 0.00 36.33 3.91
1780 1862 9.906660 TCTTCATTTTTGAACACATGGTATTAC 57.093 29.630 0.00 0.00 0.00 1.89
1781 1863 9.689976 CTTCATTTTTGAACACATGGTATTACA 57.310 29.630 0.00 0.00 0.00 2.41
1794 1876 7.862372 CACATGGTATTACATTATTCTTGGCAC 59.138 37.037 0.00 0.00 0.00 5.01
1796 1878 6.427441 TGGTATTACATTATTCTTGGCACCA 58.573 36.000 0.00 0.00 0.00 4.17
1813 1895 5.066764 TGGCACCAGTTTTACTGTTTAACTC 59.933 40.000 6.13 0.00 44.50 3.01
1831 1913 8.699749 GTTTAACTCATGGAAGCAAAACATTAC 58.300 33.333 0.00 0.00 30.42 1.89
1844 1926 8.525290 AGCAAAACATTACTAGCAATTCCTAT 57.475 30.769 0.00 0.00 0.00 2.57
1853 1935 0.871057 GCAATTCCTATCTGCGCTCC 59.129 55.000 9.73 0.00 0.00 4.70
1867 1949 2.203800 CGCTCCGCTATGTTCTTGTA 57.796 50.000 0.00 0.00 0.00 2.41
1868 1950 2.743938 CGCTCCGCTATGTTCTTGTAT 58.256 47.619 0.00 0.00 0.00 2.29
1872 1954 4.627467 GCTCCGCTATGTTCTTGTATATGG 59.373 45.833 0.00 0.00 0.00 2.74
1894 1992 5.163447 TGGTTGTACCTACATGTATCTCAGC 60.163 44.000 5.91 6.03 39.58 4.26
1897 1995 4.885325 TGTACCTACATGTATCTCAGCGAA 59.115 41.667 5.91 0.00 0.00 4.70
1925 2023 6.030849 CACTAGTCTTGTAGTGTGTATGCTC 58.969 44.000 0.00 0.00 43.39 4.26
1929 2027 5.182570 AGTCTTGTAGTGTGTATGCTCGTTA 59.817 40.000 0.00 0.00 0.00 3.18
1943 2041 3.111853 CTCGTTAGCATGGCCATTAGA 57.888 47.619 17.92 8.29 0.00 2.10
1946 2044 5.222079 TCGTTAGCATGGCCATTAGATTA 57.778 39.130 17.92 0.00 0.00 1.75
1947 2045 5.237815 TCGTTAGCATGGCCATTAGATTAG 58.762 41.667 17.92 3.75 0.00 1.73
1948 2046 4.997395 CGTTAGCATGGCCATTAGATTAGT 59.003 41.667 17.92 0.00 0.00 2.24
1949 2047 5.470098 CGTTAGCATGGCCATTAGATTAGTT 59.530 40.000 17.92 3.34 0.00 2.24
1950 2048 6.649141 CGTTAGCATGGCCATTAGATTAGTTA 59.351 38.462 17.92 2.25 0.00 2.24
1952 2050 8.507249 GTTAGCATGGCCATTAGATTAGTTAAG 58.493 37.037 17.92 0.40 0.00 1.85
1953 2051 6.841601 AGCATGGCCATTAGATTAGTTAAGA 58.158 36.000 17.92 0.00 0.00 2.10
1955 2053 7.946776 AGCATGGCCATTAGATTAGTTAAGAAT 59.053 33.333 17.92 0.00 0.00 2.40
1956 2054 8.025445 GCATGGCCATTAGATTAGTTAAGAATG 58.975 37.037 17.92 0.00 0.00 2.67
1957 2055 9.071276 CATGGCCATTAGATTAGTTAAGAATGT 57.929 33.333 17.92 0.00 0.00 2.71
1987 2085 4.250464 TGGTTGGATCATTAACGTCACTC 58.750 43.478 0.00 0.00 0.00 3.51
2020 2118 9.191995 CTTGGGTTCACATTTCTTATTTTGTAC 57.808 33.333 0.00 0.00 0.00 2.90
2041 2139 8.771920 TGTACGTGAGAAATTCATCTTATGTT 57.228 30.769 0.00 0.00 36.75 2.71
2088 2187 5.510430 ACTTGTTTTCCTCTCTTGGACTTT 58.490 37.500 0.00 0.00 35.58 2.66
2268 2370 3.435671 CGTGACCTGAAACCTGGTAATTC 59.564 47.826 0.00 1.63 36.22 2.17
2278 2380 3.381335 ACCTGGTAATTCGGTGGACTAT 58.619 45.455 0.00 0.00 0.00 2.12
2315 2417 4.672587 TGCTGCCTCTATACCAGTAAAG 57.327 45.455 0.00 0.00 0.00 1.85
2320 2422 5.269991 TGCCTCTATACCAGTAAAGTGACT 58.730 41.667 0.00 0.00 0.00 3.41
2321 2423 6.429151 TGCCTCTATACCAGTAAAGTGACTA 58.571 40.000 0.00 0.00 0.00 2.59
2332 2434 8.422566 ACCAGTAAAGTGACTATAATCTAAGGC 58.577 37.037 0.00 0.00 0.00 4.35
2333 2435 8.643324 CCAGTAAAGTGACTATAATCTAAGGCT 58.357 37.037 0.00 0.00 0.00 4.58
2387 2489 8.227119 GTGACAAATGGTATTGTTAAAATTGCC 58.773 33.333 0.00 0.00 43.31 4.52
2414 2516 2.375174 TGGGTTGGCAAGAGAAGTATGT 59.625 45.455 0.00 0.00 0.00 2.29
2485 2588 5.895636 TGTATGAAAAGGCCATGTTACTG 57.104 39.130 5.01 0.00 0.00 2.74
2494 2597 3.011257 AGGCCATGTTACTGTATTGGGTT 59.989 43.478 5.01 0.00 0.00 4.11
2497 2600 4.743493 CCATGTTACTGTATTGGGTTTGC 58.257 43.478 0.00 0.00 0.00 3.68
2513 2616 4.761235 GTTTGCACCTAAACCTTACCTC 57.239 45.455 0.00 0.00 35.12 3.85
2606 2709 8.871686 ATGTTTCTGTCATTGGTTTAAGTTTC 57.128 30.769 0.00 0.00 0.00 2.78
2770 3055 6.750501 CACCTTGTCAAATTTCTGCATATGAG 59.249 38.462 6.97 1.43 0.00 2.90
2781 3066 9.745880 AATTTCTGCATATGAGATCATTTGTTC 57.254 29.630 6.97 1.46 37.53 3.18
2792 3077 9.994432 ATGAGATCATTTGTTCGTTTAATCTTC 57.006 29.630 0.00 0.00 31.37 2.87
2796 3081 9.612620 GATCATTTGTTCGTTTAATCTTCTTGT 57.387 29.630 0.00 0.00 0.00 3.16
2797 3082 8.781067 TCATTTGTTCGTTTAATCTTCTTGTG 57.219 30.769 0.00 0.00 0.00 3.33
2798 3083 7.378461 TCATTTGTTCGTTTAATCTTCTTGTGC 59.622 33.333 0.00 0.00 0.00 4.57
2799 3084 5.103290 TGTTCGTTTAATCTTCTTGTGCC 57.897 39.130 0.00 0.00 0.00 5.01
2800 3085 4.576873 TGTTCGTTTAATCTTCTTGTGCCA 59.423 37.500 0.00 0.00 0.00 4.92
2801 3086 5.240623 TGTTCGTTTAATCTTCTTGTGCCAT 59.759 36.000 0.00 0.00 0.00 4.40
2802 3087 6.428465 TGTTCGTTTAATCTTCTTGTGCCATA 59.572 34.615 0.00 0.00 0.00 2.74
2803 3088 6.417191 TCGTTTAATCTTCTTGTGCCATAC 57.583 37.500 0.00 0.00 0.00 2.39
2813 3098 6.763135 TCTTCTTGTGCCATACTGTCATTATC 59.237 38.462 0.00 0.00 0.00 1.75
2834 3119 2.027385 GCTTCCCCTTATGAGCCTTTG 58.973 52.381 0.00 0.00 0.00 2.77
2849 3134 3.887716 AGCCTTTGTGCCTGAATGATATC 59.112 43.478 0.00 0.00 0.00 1.63
2935 3221 6.152831 AGCTTTTTACACTGTCTCCACTTTTT 59.847 34.615 0.00 0.00 0.00 1.94
2958 3244 5.172934 TCCTGGTGAAACGTATGTATTGAC 58.827 41.667 0.00 0.00 38.12 3.18
2982 3268 8.910351 ACCTCTACTTTTCATAGCATAAATCC 57.090 34.615 0.00 0.00 0.00 3.01
3314 3600 7.051000 GGAAGCTTTAGACTTGATCAAGGTAT 58.949 38.462 33.11 22.12 42.53 2.73
3822 4110 6.798427 AAGATGAATGAGCCTAGTGAGTTA 57.202 37.500 0.00 0.00 0.00 2.24
3853 4141 6.147164 TCACAATTCGTTTGCTAGGAAGTTAG 59.853 38.462 0.00 0.00 39.03 2.34
3866 4154 8.910944 TGCTAGGAAGTTAGTACGAAAATCTAT 58.089 33.333 0.00 0.00 0.00 1.98
4057 4361 6.630045 GTGTACCATTGTTCGAAAACAGTAAC 59.370 38.462 0.00 0.00 45.72 2.50
4140 4444 4.156008 GTGTTGCTCTTGGGTGTTAATAGG 59.844 45.833 0.00 0.00 0.00 2.57
4211 4515 6.763135 GTCAGAACATGATGATTACTGGCTTA 59.237 38.462 0.00 0.00 40.92 3.09
4247 4590 9.216117 GTACAGCAAAACGGGATAAGATATTAT 57.784 33.333 0.00 0.00 0.00 1.28
4249 4592 7.023575 CAGCAAAACGGGATAAGATATTATGC 58.976 38.462 3.20 3.20 0.00 3.14
4250 4593 6.942576 AGCAAAACGGGATAAGATATTATGCT 59.057 34.615 10.83 3.69 33.45 3.79
4251 4594 7.023575 GCAAAACGGGATAAGATATTATGCTG 58.976 38.462 16.26 16.26 37.55 4.41
4252 4595 7.530010 CAAAACGGGATAAGATATTATGCTGG 58.470 38.462 20.35 11.53 36.36 4.85
4253 4596 6.620877 AACGGGATAAGATATTATGCTGGA 57.379 37.500 20.35 0.00 36.36 3.86
4254 4597 5.978814 ACGGGATAAGATATTATGCTGGAC 58.021 41.667 20.35 1.70 36.36 4.02
4255 4598 5.721960 ACGGGATAAGATATTATGCTGGACT 59.278 40.000 20.35 1.89 36.36 3.85
4256 4599 6.895756 ACGGGATAAGATATTATGCTGGACTA 59.104 38.462 20.35 0.00 36.36 2.59
4257 4600 7.399191 ACGGGATAAGATATTATGCTGGACTAA 59.601 37.037 20.35 0.00 36.36 2.24
4258 4601 7.707035 CGGGATAAGATATTATGCTGGACTAAC 59.293 40.741 11.46 0.00 30.75 2.34
4259 4602 8.763601 GGGATAAGATATTATGCTGGACTAACT 58.236 37.037 10.83 0.00 0.00 2.24
4260 4603 9.810545 GGATAAGATATTATGCTGGACTAACTC 57.189 37.037 4.51 0.00 0.00 3.01
4264 4607 8.200024 AGATATTATGCTGGACTAACTCATGT 57.800 34.615 0.00 0.00 0.00 3.21
4265 4608 8.654997 AGATATTATGCTGGACTAACTCATGTT 58.345 33.333 0.00 0.00 39.98 2.71
4266 4609 8.839310 ATATTATGCTGGACTAACTCATGTTC 57.161 34.615 0.00 0.00 37.59 3.18
4267 4610 4.833478 ATGCTGGACTAACTCATGTTCT 57.167 40.909 0.00 0.00 37.59 3.01
4268 4611 3.930336 TGCTGGACTAACTCATGTTCTG 58.070 45.455 0.00 0.00 37.59 3.02
4269 4612 3.324846 TGCTGGACTAACTCATGTTCTGT 59.675 43.478 0.00 0.00 37.59 3.41
4270 4613 3.681897 GCTGGACTAACTCATGTTCTGTG 59.318 47.826 0.00 0.00 37.59 3.66
4271 4614 4.561530 GCTGGACTAACTCATGTTCTGTGA 60.562 45.833 0.00 0.00 37.59 3.58
4272 4615 5.139435 TGGACTAACTCATGTTCTGTGAG 57.861 43.478 1.85 1.85 46.60 3.51
4273 4616 4.021104 TGGACTAACTCATGTTCTGTGAGG 60.021 45.833 7.89 0.00 45.72 3.86
4274 4617 4.499183 GACTAACTCATGTTCTGTGAGGG 58.501 47.826 7.89 1.31 45.72 4.30
4275 4618 2.191128 AACTCATGTTCTGTGAGGGC 57.809 50.000 7.89 0.00 45.72 5.19
4276 4619 1.059098 ACTCATGTTCTGTGAGGGCA 58.941 50.000 7.89 0.00 45.72 5.36
4277 4620 1.002888 ACTCATGTTCTGTGAGGGCAG 59.997 52.381 7.89 0.00 45.72 4.85
4278 4621 1.002888 CTCATGTTCTGTGAGGGCAGT 59.997 52.381 0.00 0.00 39.48 4.40
4279 4622 1.162698 CATGTTCTGTGAGGGCAGTG 58.837 55.000 0.00 0.00 37.70 3.66
4280 4623 1.059098 ATGTTCTGTGAGGGCAGTGA 58.941 50.000 0.00 0.00 37.70 3.41
4281 4624 0.836606 TGTTCTGTGAGGGCAGTGAA 59.163 50.000 0.00 0.00 37.70 3.18
4282 4625 1.421268 TGTTCTGTGAGGGCAGTGAAT 59.579 47.619 0.00 0.00 37.70 2.57
4283 4626 2.637382 TGTTCTGTGAGGGCAGTGAATA 59.363 45.455 0.00 0.00 37.70 1.75
4284 4627 3.264193 TGTTCTGTGAGGGCAGTGAATAT 59.736 43.478 0.00 0.00 37.70 1.28
4285 4628 3.548745 TCTGTGAGGGCAGTGAATATG 57.451 47.619 0.00 0.00 37.70 1.78
4286 4629 2.840038 TCTGTGAGGGCAGTGAATATGT 59.160 45.455 0.00 0.00 37.70 2.29
4287 4630 3.264193 TCTGTGAGGGCAGTGAATATGTT 59.736 43.478 0.00 0.00 37.70 2.71
4288 4631 3.609853 TGTGAGGGCAGTGAATATGTTC 58.390 45.455 0.00 0.00 34.85 3.18
4289 4632 3.264193 TGTGAGGGCAGTGAATATGTTCT 59.736 43.478 3.72 0.00 35.33 3.01
4290 4633 3.624861 GTGAGGGCAGTGAATATGTTCTG 59.375 47.826 3.72 0.00 35.33 3.02
4291 4634 3.264193 TGAGGGCAGTGAATATGTTCTGT 59.736 43.478 3.72 0.00 35.33 3.41
4292 4635 4.263462 TGAGGGCAGTGAATATGTTCTGTT 60.263 41.667 3.72 0.00 35.33 3.16
4293 4636 5.045942 TGAGGGCAGTGAATATGTTCTGTTA 60.046 40.000 3.72 0.00 35.33 2.41
4294 4637 5.815581 AGGGCAGTGAATATGTTCTGTTAA 58.184 37.500 3.72 0.00 35.33 2.01
4295 4638 6.426587 AGGGCAGTGAATATGTTCTGTTAAT 58.573 36.000 3.72 0.00 35.33 1.40
4296 4639 6.319658 AGGGCAGTGAATATGTTCTGTTAATG 59.680 38.462 3.72 0.00 35.33 1.90
4297 4640 5.973565 GGCAGTGAATATGTTCTGTTAATGC 59.026 40.000 3.72 4.31 35.33 3.56
4298 4641 5.973565 GCAGTGAATATGTTCTGTTAATGCC 59.026 40.000 3.72 0.00 35.33 4.40
4299 4642 6.194463 CAGTGAATATGTTCTGTTAATGCCG 58.806 40.000 3.72 0.00 35.33 5.69
4300 4643 5.880332 AGTGAATATGTTCTGTTAATGCCGT 59.120 36.000 3.72 0.00 35.33 5.68
4301 4644 5.965334 GTGAATATGTTCTGTTAATGCCGTG 59.035 40.000 3.72 0.00 35.33 4.94
4302 4645 5.877564 TGAATATGTTCTGTTAATGCCGTGA 59.122 36.000 3.72 0.00 35.33 4.35
4303 4646 5.991328 ATATGTTCTGTTAATGCCGTGAG 57.009 39.130 0.00 0.00 0.00 3.51
4304 4647 3.394674 TGTTCTGTTAATGCCGTGAGA 57.605 42.857 0.00 0.00 0.00 3.27
4305 4648 3.937814 TGTTCTGTTAATGCCGTGAGAT 58.062 40.909 0.00 0.00 0.00 2.75
4306 4649 5.079689 TGTTCTGTTAATGCCGTGAGATA 57.920 39.130 0.00 0.00 0.00 1.98
4307 4650 5.670485 TGTTCTGTTAATGCCGTGAGATAT 58.330 37.500 0.00 0.00 0.00 1.63
4308 4651 6.811954 TGTTCTGTTAATGCCGTGAGATATA 58.188 36.000 0.00 0.00 0.00 0.86
4309 4652 7.269316 TGTTCTGTTAATGCCGTGAGATATAA 58.731 34.615 0.00 0.00 0.00 0.98
4310 4653 7.766738 TGTTCTGTTAATGCCGTGAGATATAAA 59.233 33.333 0.00 0.00 0.00 1.40
4345 4688 7.441760 TGTTGAAACAGCTTAAATGCATTCATT 59.558 29.630 13.38 0.00 38.16 2.57
4368 4711 7.449934 TTCGACAGATTTTTCTTTTCAAAGC 57.550 32.000 0.00 0.00 35.99 3.51
4414 4757 7.440523 AATGTGTTGTTTCCTCTGACTTATC 57.559 36.000 0.00 0.00 0.00 1.75
4689 5032 7.117667 TCTGTTGCGTACAAATATATGCATAGG 59.882 37.037 12.79 2.11 44.49 2.57
4716 5062 4.400251 CCACAACCAAGTGCATCATCTATT 59.600 41.667 0.00 0.00 38.18 1.73
4718 5064 5.124297 CACAACCAAGTGCATCATCTATTGA 59.876 40.000 0.00 0.00 33.87 2.57
4754 5111 7.903145 ACCACTTCACACAGATATAAGTGTAA 58.097 34.615 11.14 0.00 46.44 2.41
4755 5112 8.372459 ACCACTTCACACAGATATAAGTGTAAA 58.628 33.333 11.14 4.52 46.44 2.01
4756 5113 8.656849 CCACTTCACACAGATATAAGTGTAAAC 58.343 37.037 11.14 0.00 46.44 2.01
4757 5114 9.203421 CACTTCACACAGATATAAGTGTAAACA 57.797 33.333 11.14 0.00 46.44 2.83
4758 5115 9.772973 ACTTCACACAGATATAAGTGTAAACAA 57.227 29.630 11.14 3.91 46.44 2.83
4925 5282 1.167851 ATCATGGTTCCGTGTTGCTG 58.832 50.000 10.35 0.00 0.00 4.41
4952 5315 4.143221 CGTGGGTTGTTTGTTTTGTGAAAG 60.143 41.667 0.00 0.00 0.00 2.62
5083 5446 7.715265 ATCTAAATCCACAAATGCGTACTAG 57.285 36.000 0.00 0.00 0.00 2.57
5103 5478 2.240667 AGGAACTGACCAGATTCCATGG 59.759 50.000 21.75 4.97 40.15 3.66
5123 5498 1.386533 CCACTCCACTCATCATTGCC 58.613 55.000 0.00 0.00 0.00 4.52
5127 5502 1.211212 CTCCACTCATCATTGCCTCCA 59.789 52.381 0.00 0.00 0.00 3.86
5134 5513 4.159135 ACTCATCATTGCCTCCATTGTTTC 59.841 41.667 0.00 0.00 0.00 2.78
5135 5514 4.346730 TCATCATTGCCTCCATTGTTTCT 58.653 39.130 0.00 0.00 0.00 2.52
5232 5617 3.076092 CTGTTCCCTCTGCAGCCT 58.924 61.111 9.47 0.00 0.00 4.58
5342 5737 1.068264 GGTTTAACAAGAGCAGCAGCC 60.068 52.381 0.00 0.00 43.56 4.85
5371 5766 0.035317 TATCATGATCCAGCGTGGGC 59.965 55.000 12.53 0.00 38.32 5.36
5421 5816 4.270834 AGTGCTAGACTCGGACAATAAGA 58.729 43.478 0.00 0.00 0.00 2.10
5468 5872 3.432588 CAGCAGCAGCAGCAGACC 61.433 66.667 12.92 0.00 45.49 3.85
5516 5923 3.007940 TGGTAGGTTGACAGTTCCTCATG 59.992 47.826 0.00 0.00 33.34 3.07
5548 5955 9.190317 TGAGATTCTGTTACTCTGTACATACAT 57.810 33.333 0.00 0.00 35.36 2.29
5554 5965 9.850628 TCTGTTACTCTGTACATACATACAAAC 57.149 33.333 0.00 0.00 34.68 2.93
5573 5984 2.891112 ACAGTTTTGTACGAACGACCA 58.109 42.857 0.14 0.00 35.25 4.02
5639 6051 4.639310 AGTGATGGTGATGAAGATTCAAGC 59.361 41.667 0.00 0.00 41.13 4.01
5677 6103 5.389859 TCTTTGATTACTGCATTTGGTGG 57.610 39.130 0.00 0.00 0.00 4.61
5678 6104 4.832266 TCTTTGATTACTGCATTTGGTGGT 59.168 37.500 0.00 0.00 0.00 4.16
5679 6105 4.782019 TTGATTACTGCATTTGGTGGTC 57.218 40.909 0.00 0.00 0.00 4.02
5693 6122 9.013229 GCATTTGGTGGTCTTTATGATGATATA 57.987 33.333 0.00 0.00 0.00 0.86
5703 6132 9.964253 GTCTTTATGATGATATATTCTTGCACG 57.036 33.333 0.00 0.00 0.00 5.34
5716 6145 3.059884 TCTTGCACGTTCTCTTGTGATC 58.940 45.455 0.00 0.00 38.36 2.92
5733 6162 4.999311 TGTGATCTTGTTTCTGATGGTGAG 59.001 41.667 0.00 0.00 0.00 3.51
5738 6167 4.580167 TCTTGTTTCTGATGGTGAGGTTTG 59.420 41.667 0.00 0.00 0.00 2.93
5759 6188 0.677731 ATGGCCTTGATGTCGTGGTG 60.678 55.000 3.32 0.00 0.00 4.17
5777 6206 2.126189 GTGGTGGCGTACGAGGAC 60.126 66.667 21.65 11.14 0.00 3.85
5778 6207 2.598099 TGGTGGCGTACGAGGACA 60.598 61.111 21.65 9.22 0.00 4.02
5781 6210 1.518572 GTGGCGTACGAGGACATGG 60.519 63.158 21.65 0.00 0.00 3.66
5857 6295 3.186001 AGTGAAGTGACGACGTACACTAG 59.814 47.826 23.75 0.00 44.94 2.57
5860 6298 4.386954 TGAAGTGACGACGTACACTAGTAG 59.613 45.833 23.75 0.00 44.94 2.57
5861 6299 2.670414 AGTGACGACGTACACTAGTAGC 59.330 50.000 22.82 1.24 44.06 3.58
5862 6300 2.670414 GTGACGACGTACACTAGTAGCT 59.330 50.000 17.62 0.00 34.65 3.32
5863 6301 3.124297 GTGACGACGTACACTAGTAGCTT 59.876 47.826 17.62 0.00 34.65 3.74
5864 6302 3.124128 TGACGACGTACACTAGTAGCTTG 59.876 47.826 0.00 0.00 0.00 4.01
5866 6304 4.245660 ACGACGTACACTAGTAGCTTGTA 58.754 43.478 0.00 0.00 0.00 2.41
5869 6307 5.516696 CGACGTACACTAGTAGCTTGTAGTA 59.483 44.000 0.00 0.00 0.00 1.82
5871 6309 5.814705 ACGTACACTAGTAGCTTGTAGTAGG 59.185 44.000 0.00 0.00 0.00 3.18
5934 6378 3.110178 GCGACGACGGTGGAAAGG 61.110 66.667 9.67 0.00 40.15 3.11
6011 6475 4.308458 TTGCGTGGCGGTGCTACT 62.308 61.111 3.83 0.00 37.88 2.57
6012 6476 2.933401 TTGCGTGGCGGTGCTACTA 61.933 57.895 3.83 0.00 37.88 1.82
6013 6477 2.884207 GCGTGGCGGTGCTACTAC 60.884 66.667 3.83 0.00 37.88 2.73
6014 6478 2.882876 CGTGGCGGTGCTACTACT 59.117 61.111 3.83 0.00 37.88 2.57
6030 6494 4.327854 ACTACTAGTACCGTTTTCGTCG 57.672 45.455 0.00 0.00 42.35 5.12
6031 6495 3.746492 ACTACTAGTACCGTTTTCGTCGT 59.254 43.478 0.00 0.00 42.35 4.34
6032 6496 2.921126 ACTAGTACCGTTTTCGTCGTG 58.079 47.619 0.00 0.00 42.35 4.35
6033 6497 2.245096 CTAGTACCGTTTTCGTCGTGG 58.755 52.381 0.00 0.00 42.35 4.94
6037 6501 1.091197 ACCGTTTTCGTCGTGGCTTT 61.091 50.000 0.00 0.00 42.35 3.51
6045 6509 1.864711 TCGTCGTGGCTTTCTTTCTTG 59.135 47.619 0.00 0.00 0.00 3.02
6129 7531 3.134127 GCCATCCAAGGTCGCACC 61.134 66.667 0.00 0.00 38.99 5.01
6130 7532 2.819595 CCATCCAAGGTCGCACCG 60.820 66.667 0.49 0.00 44.90 4.94
6131 7533 3.499737 CATCCAAGGTCGCACCGC 61.500 66.667 0.49 0.00 44.90 5.68
6152 7569 4.711949 CCAGCCGCTCCTGCAGTT 62.712 66.667 13.81 0.00 39.64 3.16
6185 7602 2.483013 GCTGTCGCTACCACCATTGATA 60.483 50.000 0.00 0.00 0.00 2.15
6186 7603 3.792401 CTGTCGCTACCACCATTGATAA 58.208 45.455 0.00 0.00 0.00 1.75
6187 7604 3.792401 TGTCGCTACCACCATTGATAAG 58.208 45.455 0.00 0.00 0.00 1.73
6188 7605 2.544267 GTCGCTACCACCATTGATAAGC 59.456 50.000 0.00 0.00 0.00 3.09
6189 7606 2.434336 TCGCTACCACCATTGATAAGCT 59.566 45.455 0.00 0.00 0.00 3.74
6193 7610 2.648059 ACCACCATTGATAAGCTGAGC 58.352 47.619 0.00 0.00 0.00 4.26
6199 7616 3.203716 CATTGATAAGCTGAGCAGAGCA 58.796 45.455 7.39 0.00 41.83 4.26
6224 7642 2.652095 CCCCTGGCGACCGACTAAA 61.652 63.158 0.00 0.00 0.00 1.85
6226 7644 0.107848 CCCTGGCGACCGACTAAATT 60.108 55.000 0.00 0.00 0.00 1.82
6227 7645 1.287425 CCTGGCGACCGACTAAATTC 58.713 55.000 0.00 0.00 0.00 2.17
6254 7681 2.801679 TGACACGGGCGTAAAACTAAAG 59.198 45.455 0.00 0.00 0.00 1.85
6277 7704 1.776034 GCGAATGCCACGATTCCTCC 61.776 60.000 0.00 0.00 33.98 4.30
6291 7718 2.951229 TCCTCCTCTGTTTTTCCCAC 57.049 50.000 0.00 0.00 0.00 4.61
6292 7719 1.071699 TCCTCCTCTGTTTTTCCCACG 59.928 52.381 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.765314 ACCCATGGAGTAGATCACAGC 59.235 52.381 15.22 0.00 0.00 4.40
1 2 4.194640 CAAACCCATGGAGTAGATCACAG 58.805 47.826 15.22 0.00 0.00 3.66
2 3 3.587061 ACAAACCCATGGAGTAGATCACA 59.413 43.478 15.22 0.00 0.00 3.58
3 4 4.222124 ACAAACCCATGGAGTAGATCAC 57.778 45.455 15.22 0.00 0.00 3.06
4 5 4.927267 AACAAACCCATGGAGTAGATCA 57.073 40.909 15.22 0.00 0.00 2.92
5 6 6.127026 ACTCTAACAAACCCATGGAGTAGATC 60.127 42.308 15.22 0.00 31.93 2.75
6 7 5.726793 ACTCTAACAAACCCATGGAGTAGAT 59.273 40.000 15.22 3.96 31.93 1.98
7 8 5.091552 ACTCTAACAAACCCATGGAGTAGA 58.908 41.667 15.22 7.79 31.93 2.59
8 9 5.422214 ACTCTAACAAACCCATGGAGTAG 57.578 43.478 15.22 8.48 31.93 2.57
9 10 5.836024 AACTCTAACAAACCCATGGAGTA 57.164 39.130 15.22 0.00 33.12 2.59
10 11 4.724279 AACTCTAACAAACCCATGGAGT 57.276 40.909 15.22 6.69 34.60 3.85
11 12 4.321230 GCAAACTCTAACAAACCCATGGAG 60.321 45.833 15.22 5.95 0.00 3.86
12 13 3.572255 GCAAACTCTAACAAACCCATGGA 59.428 43.478 15.22 0.00 0.00 3.41
13 14 3.306019 GGCAAACTCTAACAAACCCATGG 60.306 47.826 4.14 4.14 0.00 3.66
14 15 3.573967 AGGCAAACTCTAACAAACCCATG 59.426 43.478 0.00 0.00 0.00 3.66
15 16 3.826729 GAGGCAAACTCTAACAAACCCAT 59.173 43.478 0.00 0.00 43.14 4.00
16 17 3.219281 GAGGCAAACTCTAACAAACCCA 58.781 45.455 0.00 0.00 43.14 4.51
68 71 2.105960 GAATCGCAGCGAAATCCCCG 62.106 60.000 23.76 0.00 39.99 5.73
91 94 0.865111 CATAATTCGCGGCGGAATCA 59.135 50.000 23.46 7.62 35.65 2.57
108 111 5.596361 CGCAGAGATATATTACCCTCTCCAT 59.404 44.000 0.00 0.00 35.76 3.41
109 112 4.950475 CGCAGAGATATATTACCCTCTCCA 59.050 45.833 0.00 0.00 35.76 3.86
114 117 5.326069 ACAGACGCAGAGATATATTACCCT 58.674 41.667 0.00 0.00 0.00 4.34
117 120 9.658475 GATGATACAGACGCAGAGATATATTAC 57.342 37.037 0.00 0.00 0.00 1.89
121 124 6.418946 AGGATGATACAGACGCAGAGATATA 58.581 40.000 0.00 0.00 0.00 0.86
124 127 3.495331 AGGATGATACAGACGCAGAGAT 58.505 45.455 0.00 0.00 0.00 2.75
129 132 1.067060 CGGAAGGATGATACAGACGCA 59.933 52.381 0.00 0.00 0.00 5.24
130 133 1.772182 CGGAAGGATGATACAGACGC 58.228 55.000 0.00 0.00 0.00 5.19
233 239 2.110967 CAGTCATTCTGGCGCAGGG 61.111 63.158 10.83 0.00 40.23 4.45
322 338 5.238432 ACAAATCAAACTACGCACTCATCAA 59.762 36.000 0.00 0.00 0.00 2.57
365 382 3.073062 AGTGGCCACTATGAGACAAAAGT 59.927 43.478 37.12 7.73 40.43 2.66
375 392 3.955145 TGGAACAGTGGCCACTATG 57.045 52.632 37.27 28.17 40.20 2.23
518 547 2.606108 GCGGCAGTTTATCCTTTTTGG 58.394 47.619 0.00 0.00 37.10 3.28
586 627 2.298610 CATGGATGAACAGATGCAGCT 58.701 47.619 0.00 0.00 0.00 4.24
611 652 4.393062 CCCTTAGCGAGCAATATAACCATG 59.607 45.833 0.00 0.00 0.00 3.66
616 657 4.253685 GCATCCCTTAGCGAGCAATATAA 58.746 43.478 0.00 0.00 0.00 0.98
619 660 1.416030 TGCATCCCTTAGCGAGCAATA 59.584 47.619 0.00 0.00 0.00 1.90
649 690 3.942115 CGGTATCTGACTCTCAAGACTGA 59.058 47.826 0.00 0.00 31.94 3.41
680 723 4.870363 AGATCTGCGAGAGATAAAAGAGC 58.130 43.478 0.00 0.00 41.91 4.09
701 747 0.443869 CCCAGCACGTTCATCGAAAG 59.556 55.000 0.00 0.00 42.86 2.62
745 791 2.188829 CCAATGCATCGGCGTGGAT 61.189 57.895 6.85 8.68 45.86 3.41
788 834 1.154150 GACATGCTTGTTGCGGCTC 60.154 57.895 6.70 0.00 46.63 4.70
885 931 0.247974 CGGTAGTAGGTTCGCTCGTG 60.248 60.000 0.00 0.00 0.00 4.35
888 934 1.089920 TCACGGTAGTAGGTTCGCTC 58.910 55.000 0.00 0.00 0.00 5.03
906 952 2.350772 CGCACCACCTTTGAAACTCATC 60.351 50.000 0.00 0.00 0.00 2.92
912 958 0.684805 AACCCGCACCACCTTTGAAA 60.685 50.000 0.00 0.00 0.00 2.69
933 979 2.612212 AGTAACAAAACCGAGCACTGTG 59.388 45.455 2.76 2.76 0.00 3.66
1022 1069 6.493978 GCGCAAAATTTATAATGGGCAAAAT 58.506 32.000 19.13 0.00 46.98 1.82
1034 1081 2.575694 TCATGCGGCGCAAAATTTAT 57.424 40.000 39.46 18.13 43.62 1.40
1037 1084 0.319383 TGTTCATGCGGCGCAAAATT 60.319 45.000 39.46 20.27 43.62 1.82
1043 1090 2.187599 AAGAACTGTTCATGCGGCGC 62.188 55.000 27.44 27.44 0.00 6.53
1044 1091 0.453282 CAAGAACTGTTCATGCGGCG 60.453 55.000 21.50 0.51 0.00 6.46
1046 1093 1.136252 CGTCAAGAACTGTTCATGCGG 60.136 52.381 21.50 11.17 30.39 5.69
1060 1108 4.756084 AAAATTCAGAAGCCTCGTCAAG 57.244 40.909 0.00 0.00 0.00 3.02
1065 1113 3.240069 CTGCAAAAATTCAGAAGCCTCG 58.760 45.455 0.00 0.00 32.26 4.63
1185 1233 3.963428 TTTACAAGAGAGCAGAGTCCC 57.037 47.619 0.00 0.00 0.00 4.46
1255 1327 2.839486 AAAAAGCTAGCAAAAGGCCC 57.161 45.000 18.83 0.00 46.50 5.80
1279 1351 2.708325 AGGGGGCAGCTTATTCTAGAAG 59.292 50.000 11.53 0.00 0.00 2.85
1280 1352 2.776665 AGGGGGCAGCTTATTCTAGAA 58.223 47.619 7.82 7.82 0.00 2.10
1281 1353 2.496679 AGGGGGCAGCTTATTCTAGA 57.503 50.000 0.00 0.00 0.00 2.43
1282 1354 2.303311 GGTAGGGGGCAGCTTATTCTAG 59.697 54.545 0.00 0.00 0.00 2.43
1283 1355 2.335933 GGTAGGGGGCAGCTTATTCTA 58.664 52.381 0.00 0.00 0.00 2.10
1284 1356 1.141185 GGTAGGGGGCAGCTTATTCT 58.859 55.000 0.00 0.00 0.00 2.40
1285 1357 0.110678 GGGTAGGGGGCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
1286 1358 0.626277 TGGGTAGGGGGCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
1287 1359 1.005556 TGGGTAGGGGGCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
1288 1360 1.692749 CTGGGTAGGGGGCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
1289 1361 3.017581 CTGGGTAGGGGGCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
1292 1364 1.062488 ATAAGCTGGGTAGGGGGCAG 61.062 60.000 0.00 0.00 0.00 4.85
1293 1365 0.626277 AATAAGCTGGGTAGGGGGCA 60.626 55.000 0.00 0.00 0.00 5.36
1294 1366 0.110678 GAATAAGCTGGGTAGGGGGC 59.889 60.000 0.00 0.00 0.00 5.80
1295 1367 1.821088 AGAATAAGCTGGGTAGGGGG 58.179 55.000 0.00 0.00 0.00 5.40
1296 1368 3.858135 TCTAGAATAAGCTGGGTAGGGG 58.142 50.000 0.00 0.00 0.00 4.79
1297 1369 4.262678 GCTTCTAGAATAAGCTGGGTAGGG 60.263 50.000 5.44 0.00 44.75 3.53
1298 1370 4.262678 GGCTTCTAGAATAAGCTGGGTAGG 60.263 50.000 13.28 0.00 46.81 3.18
1299 1371 4.262678 GGGCTTCTAGAATAAGCTGGGTAG 60.263 50.000 13.28 0.00 46.81 3.18
1300 1372 3.646637 GGGCTTCTAGAATAAGCTGGGTA 59.353 47.826 13.28 0.00 46.81 3.69
1301 1373 2.439880 GGGCTTCTAGAATAAGCTGGGT 59.560 50.000 13.28 0.00 46.81 4.51
1302 1374 2.439507 TGGGCTTCTAGAATAAGCTGGG 59.560 50.000 13.28 0.00 46.81 4.45
1303 1375 3.471680 GTGGGCTTCTAGAATAAGCTGG 58.528 50.000 13.28 0.00 46.81 4.85
1304 1376 3.118261 TGGTGGGCTTCTAGAATAAGCTG 60.118 47.826 13.28 0.00 46.81 4.24
1305 1377 3.115390 TGGTGGGCTTCTAGAATAAGCT 58.885 45.455 13.28 0.00 46.81 3.74
1306 1378 3.560636 TGGTGGGCTTCTAGAATAAGC 57.439 47.619 5.44 5.98 46.90 3.09
1307 1379 7.410120 AATTTTGGTGGGCTTCTAGAATAAG 57.590 36.000 5.44 0.00 0.00 1.73
1308 1380 7.790782 AAATTTTGGTGGGCTTCTAGAATAA 57.209 32.000 5.44 0.00 0.00 1.40
1309 1381 7.673926 AGAAAATTTTGGTGGGCTTCTAGAATA 59.326 33.333 8.47 0.00 0.00 1.75
1310 1382 6.498303 AGAAAATTTTGGTGGGCTTCTAGAAT 59.502 34.615 8.47 0.00 0.00 2.40
1311 1383 5.838521 AGAAAATTTTGGTGGGCTTCTAGAA 59.161 36.000 8.47 4.81 0.00 2.10
1312 1384 5.393866 AGAAAATTTTGGTGGGCTTCTAGA 58.606 37.500 8.47 0.00 0.00 2.43
1313 1385 5.728637 AGAAAATTTTGGTGGGCTTCTAG 57.271 39.130 8.47 0.00 0.00 2.43
1314 1386 6.493189 AAAGAAAATTTTGGTGGGCTTCTA 57.507 33.333 8.47 0.00 0.00 2.10
1315 1387 5.372343 AAAGAAAATTTTGGTGGGCTTCT 57.628 34.783 8.47 0.00 0.00 2.85
1316 1388 6.449635 AAAAAGAAAATTTTGGTGGGCTTC 57.550 33.333 8.47 0.00 31.55 3.86
1317 1389 7.342581 TCTAAAAAGAAAATTTTGGTGGGCTT 58.657 30.769 8.47 1.43 33.84 4.35
1318 1390 6.894682 TCTAAAAAGAAAATTTTGGTGGGCT 58.105 32.000 8.47 0.00 33.84 5.19
1319 1391 7.561021 TTCTAAAAAGAAAATTTTGGTGGGC 57.439 32.000 8.47 0.00 33.84 5.36
1320 1392 7.255104 GGCTTCTAAAAAGAAAATTTTGGTGGG 60.255 37.037 8.47 0.00 33.84 4.61
1321 1393 7.498900 AGGCTTCTAAAAAGAAAATTTTGGTGG 59.501 33.333 8.47 0.00 33.84 4.61
1322 1394 8.437360 AGGCTTCTAAAAAGAAAATTTTGGTG 57.563 30.769 8.47 0.00 33.84 4.17
1323 1395 9.542462 GTAGGCTTCTAAAAAGAAAATTTTGGT 57.458 29.630 8.47 0.00 33.84 3.67
1324 1396 9.764363 AGTAGGCTTCTAAAAAGAAAATTTTGG 57.236 29.630 8.47 0.00 34.51 3.28
1330 1402 9.841295 TTGACTAGTAGGCTTCTAAAAAGAAAA 57.159 29.630 4.24 0.00 0.00 2.29
1331 1403 9.490379 CTTGACTAGTAGGCTTCTAAAAAGAAA 57.510 33.333 4.24 0.00 0.00 2.52
1332 1404 8.648693 ACTTGACTAGTAGGCTTCTAAAAAGAA 58.351 33.333 16.82 0.00 34.56 2.52
1333 1405 8.191534 ACTTGACTAGTAGGCTTCTAAAAAGA 57.808 34.615 16.82 0.00 34.56 2.52
1334 1406 8.308207 AGACTTGACTAGTAGGCTTCTAAAAAG 58.692 37.037 4.24 8.35 37.17 2.27
1335 1407 8.191534 AGACTTGACTAGTAGGCTTCTAAAAA 57.808 34.615 4.24 0.00 37.17 1.94
1336 1408 7.778185 AGACTTGACTAGTAGGCTTCTAAAA 57.222 36.000 4.24 0.00 37.17 1.52
1337 1409 7.778185 AAGACTTGACTAGTAGGCTTCTAAA 57.222 36.000 7.81 0.00 34.67 1.85
1338 1410 8.738106 GTTAAGACTTGACTAGTAGGCTTCTAA 58.262 37.037 15.67 5.03 38.98 2.10
1339 1411 8.108364 AGTTAAGACTTGACTAGTAGGCTTCTA 58.892 37.037 15.67 4.88 38.98 2.10
1340 1412 6.949463 AGTTAAGACTTGACTAGTAGGCTTCT 59.051 38.462 15.67 6.80 38.98 2.85
1341 1413 7.160547 AGTTAAGACTTGACTAGTAGGCTTC 57.839 40.000 15.67 4.82 38.98 3.86
1342 1414 7.889600 AGTAGTTAAGACTTGACTAGTAGGCTT 59.110 37.037 20.39 16.31 42.30 4.35
1343 1415 7.404481 AGTAGTTAAGACTTGACTAGTAGGCT 58.596 38.462 20.39 11.53 37.17 4.58
1344 1416 7.628769 AGTAGTTAAGACTTGACTAGTAGGC 57.371 40.000 20.39 9.87 37.17 3.93
1346 1418 8.829612 GCCTAGTAGTTAAGACTTGACTAGTAG 58.170 40.741 31.91 31.91 45.73 2.57
1347 1419 8.547173 AGCCTAGTAGTTAAGACTTGACTAGTA 58.453 37.037 23.27 23.27 40.40 1.82
1348 1420 7.404481 AGCCTAGTAGTTAAGACTTGACTAGT 58.596 38.462 23.47 23.47 40.40 2.57
1349 1421 7.868906 AGCCTAGTAGTTAAGACTTGACTAG 57.131 40.000 17.57 16.06 41.04 2.57
1350 1422 8.108364 AGAAGCCTAGTAGTTAAGACTTGACTA 58.892 37.037 14.15 14.15 37.33 2.59
1351 1423 6.949463 AGAAGCCTAGTAGTTAAGACTTGACT 59.051 38.462 16.02 16.02 37.33 3.41
1352 1424 7.160547 AGAAGCCTAGTAGTTAAGACTTGAC 57.839 40.000 1.94 1.94 37.33 3.18
1353 1425 8.874744 TTAGAAGCCTAGTAGTTAAGACTTGA 57.125 34.615 0.00 0.00 37.33 3.02
1354 1426 9.924650 TTTTAGAAGCCTAGTAGTTAAGACTTG 57.075 33.333 0.00 0.00 37.33 3.16
1385 1457 8.783093 GCTTATTTTAGAAGCCCAAACAAATTT 58.217 29.630 0.00 0.00 42.90 1.82
1386 1458 8.322906 GCTTATTTTAGAAGCCCAAACAAATT 57.677 30.769 0.00 0.00 42.90 1.82
1387 1459 7.905604 GCTTATTTTAGAAGCCCAAACAAAT 57.094 32.000 0.00 0.00 42.90 2.32
1398 1470 5.377478 CCCCTACCCAGCTTATTTTAGAAG 58.623 45.833 0.00 0.00 0.00 2.85
1399 1471 4.167307 CCCCCTACCCAGCTTATTTTAGAA 59.833 45.833 0.00 0.00 0.00 2.10
1400 1472 3.720002 CCCCCTACCCAGCTTATTTTAGA 59.280 47.826 0.00 0.00 0.00 2.10
1401 1473 3.750922 GCCCCCTACCCAGCTTATTTTAG 60.751 52.174 0.00 0.00 0.00 1.85
1402 1474 2.176148 GCCCCCTACCCAGCTTATTTTA 59.824 50.000 0.00 0.00 0.00 1.52
1403 1475 1.063190 GCCCCCTACCCAGCTTATTTT 60.063 52.381 0.00 0.00 0.00 1.82
1404 1476 0.556258 GCCCCCTACCCAGCTTATTT 59.444 55.000 0.00 0.00 0.00 1.40
1405 1477 0.626277 TGCCCCCTACCCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
1406 1478 1.005556 TGCCCCCTACCCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
1407 1479 1.692749 CTGCCCCCTACCCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
1408 1480 3.017581 CTGCCCCCTACCCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
1411 1483 1.062488 ATAAGCTGCCCCCTACCCAG 61.062 60.000 0.00 0.00 0.00 4.45
1412 1484 0.626277 AATAAGCTGCCCCCTACCCA 60.626 55.000 0.00 0.00 0.00 4.51
1413 1485 0.178990 CAATAAGCTGCCCCCTACCC 60.179 60.000 0.00 0.00 0.00 3.69
1414 1486 0.823769 GCAATAAGCTGCCCCCTACC 60.824 60.000 0.00 0.00 41.15 3.18
1415 1487 0.106719 TGCAATAAGCTGCCCCCTAC 60.107 55.000 0.00 0.00 45.94 3.18
1416 1488 0.183492 CTGCAATAAGCTGCCCCCTA 59.817 55.000 0.00 0.00 45.94 3.53
1417 1489 1.076485 CTGCAATAAGCTGCCCCCT 60.076 57.895 0.00 0.00 45.94 4.79
1418 1490 3.530067 CTGCAATAAGCTGCCCCC 58.470 61.111 0.00 0.00 45.94 5.40
1425 1497 6.369799 GCTTCTAGAATAAGCTGCAATAAGC 58.630 40.000 5.44 3.48 44.75 3.09
1426 1498 6.484643 TGGCTTCTAGAATAAGCTGCAATAAG 59.515 38.462 13.28 0.00 46.81 1.73
1427 1499 6.260936 GTGGCTTCTAGAATAAGCTGCAATAA 59.739 38.462 13.28 0.00 46.81 1.40
1428 1500 5.760253 GTGGCTTCTAGAATAAGCTGCAATA 59.240 40.000 13.28 0.00 46.81 1.90
1429 1501 4.578105 GTGGCTTCTAGAATAAGCTGCAAT 59.422 41.667 13.28 0.00 46.81 3.56
1430 1502 3.941483 GTGGCTTCTAGAATAAGCTGCAA 59.059 43.478 13.28 0.69 46.81 4.08
1431 1503 3.535561 GTGGCTTCTAGAATAAGCTGCA 58.464 45.455 13.28 3.14 46.81 4.41
1432 1504 2.875317 GGTGGCTTCTAGAATAAGCTGC 59.125 50.000 13.28 8.77 46.81 5.25
1433 1505 4.142609 TGGTGGCTTCTAGAATAAGCTG 57.857 45.455 13.28 0.00 46.81 4.24
1434 1506 4.844349 TTGGTGGCTTCTAGAATAAGCT 57.156 40.909 13.28 0.00 46.81 3.74
1435 1507 5.648092 TCTTTTGGTGGCTTCTAGAATAAGC 59.352 40.000 5.44 5.98 46.90 3.09
1436 1508 7.391833 AGTTCTTTTGGTGGCTTCTAGAATAAG 59.608 37.037 5.44 0.00 0.00 1.73
1437 1509 7.174946 CAGTTCTTTTGGTGGCTTCTAGAATAA 59.825 37.037 5.44 0.00 0.00 1.40
1438 1510 6.655003 CAGTTCTTTTGGTGGCTTCTAGAATA 59.345 38.462 5.44 0.00 0.00 1.75
1439 1511 5.474876 CAGTTCTTTTGGTGGCTTCTAGAAT 59.525 40.000 5.44 0.00 0.00 2.40
1440 1512 4.821805 CAGTTCTTTTGGTGGCTTCTAGAA 59.178 41.667 4.81 4.81 0.00 2.10
1441 1513 4.389374 CAGTTCTTTTGGTGGCTTCTAGA 58.611 43.478 0.00 0.00 0.00 2.43
1442 1514 3.057946 GCAGTTCTTTTGGTGGCTTCTAG 60.058 47.826 0.00 0.00 0.00 2.43
1443 1515 2.884639 GCAGTTCTTTTGGTGGCTTCTA 59.115 45.455 0.00 0.00 0.00 2.10
1444 1516 1.683385 GCAGTTCTTTTGGTGGCTTCT 59.317 47.619 0.00 0.00 0.00 2.85
1445 1517 1.269778 GGCAGTTCTTTTGGTGGCTTC 60.270 52.381 0.00 0.00 32.92 3.86
1446 1518 0.752658 GGCAGTTCTTTTGGTGGCTT 59.247 50.000 0.00 0.00 32.92 4.35
1447 1519 1.115326 GGGCAGTTCTTTTGGTGGCT 61.115 55.000 0.00 0.00 35.85 4.75
1448 1520 1.367471 GGGCAGTTCTTTTGGTGGC 59.633 57.895 0.00 0.00 34.84 5.01
1449 1521 0.469892 AGGGGCAGTTCTTTTGGTGG 60.470 55.000 0.00 0.00 0.00 4.61
1450 1522 1.413118 AAGGGGCAGTTCTTTTGGTG 58.587 50.000 0.00 0.00 0.00 4.17
1451 1523 3.165071 CATAAGGGGCAGTTCTTTTGGT 58.835 45.455 0.00 0.00 0.00 3.67
1452 1524 2.094026 GCATAAGGGGCAGTTCTTTTGG 60.094 50.000 0.00 0.00 0.00 3.28
1453 1525 2.827921 AGCATAAGGGGCAGTTCTTTTG 59.172 45.455 0.00 0.00 0.00 2.44
1454 1526 3.175438 AGCATAAGGGGCAGTTCTTTT 57.825 42.857 0.00 0.00 0.00 2.27
1455 1527 2.827921 CAAGCATAAGGGGCAGTTCTTT 59.172 45.455 0.00 0.00 0.00 2.52
1456 1528 2.225117 ACAAGCATAAGGGGCAGTTCTT 60.225 45.455 0.00 0.00 0.00 2.52
1457 1529 1.355720 ACAAGCATAAGGGGCAGTTCT 59.644 47.619 0.00 0.00 0.00 3.01
1458 1530 1.839424 ACAAGCATAAGGGGCAGTTC 58.161 50.000 0.00 0.00 0.00 3.01
1459 1531 3.089284 GTTACAAGCATAAGGGGCAGTT 58.911 45.455 0.00 0.00 0.00 3.16
1460 1532 2.620627 GGTTACAAGCATAAGGGGCAGT 60.621 50.000 0.00 0.00 0.00 4.40
1461 1533 2.024414 GGTTACAAGCATAAGGGGCAG 58.976 52.381 0.00 0.00 0.00 4.85
1462 1534 1.356059 TGGTTACAAGCATAAGGGGCA 59.644 47.619 0.00 0.00 0.00 5.36
1463 1535 2.137810 TGGTTACAAGCATAAGGGGC 57.862 50.000 0.00 0.00 0.00 5.80
1464 1536 3.885297 CTGATGGTTACAAGCATAAGGGG 59.115 47.826 9.72 0.00 46.18 4.79
1465 1537 4.780815 TCTGATGGTTACAAGCATAAGGG 58.219 43.478 15.36 4.61 46.18 3.95
1466 1538 5.674525 TCTCTGATGGTTACAAGCATAAGG 58.325 41.667 15.36 8.68 46.18 2.69
1467 1539 7.798596 AATCTCTGATGGTTACAAGCATAAG 57.201 36.000 10.94 10.94 46.18 1.73
1603 1681 9.126151 AGATACGATGATATACCCATTACTGAG 57.874 37.037 0.00 0.00 0.00 3.35
1638 1716 4.988708 ACACAAAAAGCAAAACAGTGTG 57.011 36.364 0.00 0.00 40.48 3.82
1643 1721 7.099764 TCTCCATTAACACAAAAAGCAAAACA 58.900 30.769 0.00 0.00 0.00 2.83
1780 1862 6.808212 CAGTAAAACTGGTGCCAAGAATAATG 59.192 38.462 0.00 0.00 42.35 1.90
1781 1863 6.924111 CAGTAAAACTGGTGCCAAGAATAAT 58.076 36.000 0.00 0.00 42.35 1.28
1796 1878 7.284489 TGCTTCCATGAGTTAAACAGTAAAACT 59.716 33.333 0.00 1.00 36.20 2.66
1813 1895 5.953183 TGCTAGTAATGTTTTGCTTCCATG 58.047 37.500 0.00 0.00 0.00 3.66
1831 1913 2.992543 GAGCGCAGATAGGAATTGCTAG 59.007 50.000 11.47 0.54 35.73 3.42
1853 1935 6.844696 ACAACCATATACAAGAACATAGCG 57.155 37.500 0.00 0.00 0.00 4.26
1867 1949 8.721133 TGAGATACATGTAGGTACAACCATAT 57.279 34.615 11.91 0.00 41.95 1.78
1868 1950 7.255836 GCTGAGATACATGTAGGTACAACCATA 60.256 40.741 11.91 0.00 41.95 2.74
1872 1954 4.976731 CGCTGAGATACATGTAGGTACAAC 59.023 45.833 11.91 4.18 39.99 3.32
1894 1992 6.641314 ACACACTACAAGACTAGTGATTTTCG 59.359 38.462 0.00 0.00 44.49 3.46
1897 1995 7.545965 GCATACACACTACAAGACTAGTGATTT 59.454 37.037 0.00 0.00 44.49 2.17
1925 2023 4.997395 ACTAATCTAATGGCCATGCTAACG 59.003 41.667 21.63 8.18 0.00 3.18
1929 2027 6.841601 TCTTAACTAATCTAATGGCCATGCT 58.158 36.000 21.63 7.15 0.00 3.79
1946 2044 7.942341 TCCAACCAGTGAATAACATTCTTAACT 59.058 33.333 0.00 0.00 0.00 2.24
1947 2045 8.106247 TCCAACCAGTGAATAACATTCTTAAC 57.894 34.615 0.00 0.00 0.00 2.01
1948 2046 8.877864 ATCCAACCAGTGAATAACATTCTTAA 57.122 30.769 0.00 0.00 0.00 1.85
1949 2047 8.106462 TGATCCAACCAGTGAATAACATTCTTA 58.894 33.333 0.00 0.00 0.00 2.10
1950 2048 6.947733 TGATCCAACCAGTGAATAACATTCTT 59.052 34.615 0.00 0.00 0.00 2.52
1952 2050 6.757897 TGATCCAACCAGTGAATAACATTC 57.242 37.500 0.00 0.00 0.00 2.67
1953 2051 7.722949 AATGATCCAACCAGTGAATAACATT 57.277 32.000 0.00 0.00 0.00 2.71
1955 2053 7.148323 CGTTAATGATCCAACCAGTGAATAACA 60.148 37.037 0.00 0.00 0.00 2.41
1956 2054 7.148306 ACGTTAATGATCCAACCAGTGAATAAC 60.148 37.037 0.58 0.00 0.00 1.89
1957 2055 6.882140 ACGTTAATGATCCAACCAGTGAATAA 59.118 34.615 0.58 0.00 0.00 1.40
1959 2057 5.253330 ACGTTAATGATCCAACCAGTGAAT 58.747 37.500 0.58 0.00 0.00 2.57
1960 2058 4.647611 ACGTTAATGATCCAACCAGTGAA 58.352 39.130 0.58 0.00 0.00 3.18
1961 2059 4.250464 GACGTTAATGATCCAACCAGTGA 58.750 43.478 0.58 0.00 0.00 3.41
1962 2060 4.000325 TGACGTTAATGATCCAACCAGTG 59.000 43.478 0.58 0.00 0.00 3.66
1963 2061 4.000988 GTGACGTTAATGATCCAACCAGT 58.999 43.478 0.58 0.00 0.00 4.00
1964 2062 4.253685 AGTGACGTTAATGATCCAACCAG 58.746 43.478 0.58 0.00 0.00 4.00
1965 2063 4.020573 AGAGTGACGTTAATGATCCAACCA 60.021 41.667 0.58 0.00 0.00 3.67
1966 2064 4.504858 AGAGTGACGTTAATGATCCAACC 58.495 43.478 0.58 0.00 0.00 3.77
1967 2065 7.772332 AATAGAGTGACGTTAATGATCCAAC 57.228 36.000 0.58 0.00 0.00 3.77
1970 2068 9.530633 AAGTAAATAGAGTGACGTTAATGATCC 57.469 33.333 0.58 0.00 0.00 3.36
2020 2118 5.967674 GCCAACATAAGATGAATTTCTCACG 59.032 40.000 0.00 0.00 36.69 4.35
2187 2289 4.614555 TGCAGTATTTGGAGCATAAACG 57.385 40.909 0.00 0.00 31.05 3.60
2268 2370 8.657074 TTATTCAAACAGAATATAGTCCACCG 57.343 34.615 0.00 0.00 45.89 4.94
2278 2380 6.830324 AGAGGCAGCATTATTCAAACAGAATA 59.170 34.615 0.00 0.00 45.00 1.75
2292 2394 5.131142 ACTTTACTGGTATAGAGGCAGCATT 59.869 40.000 0.00 0.00 0.00 3.56
2369 2471 5.968528 AGTCGGCAATTTTAACAATACCA 57.031 34.783 0.00 0.00 0.00 3.25
2387 2489 0.593128 CTCTTGCCAACCCAAAGTCG 59.407 55.000 0.00 0.00 0.00 4.18
2414 2516 3.254093 TCTGTGTAAGGAGGACTGGAA 57.746 47.619 0.00 0.00 0.00 3.53
2463 2565 5.321102 ACAGTAACATGGCCTTTTCATACA 58.679 37.500 3.32 0.00 0.00 2.29
2494 2597 4.717279 AAGAGGTAAGGTTTAGGTGCAA 57.283 40.909 0.00 0.00 0.00 4.08
2497 2600 8.857694 TGAAAATAAGAGGTAAGGTTTAGGTG 57.142 34.615 0.00 0.00 0.00 4.00
2513 2616 3.617284 AGCCCGGTACCTTGAAAATAAG 58.383 45.455 10.90 0.00 0.00 1.73
2755 3040 9.745880 GAACAAATGATCTCATATGCAGAAATT 57.254 29.630 0.00 4.80 35.10 1.82
2770 3055 9.612620 ACAAGAAGATTAAACGAACAAATGATC 57.387 29.630 0.00 0.00 0.00 2.92
2798 3083 3.997021 GGGAAGCGATAATGACAGTATGG 59.003 47.826 0.00 0.19 43.62 2.74
2799 3084 3.997021 GGGGAAGCGATAATGACAGTATG 59.003 47.826 0.00 0.00 46.00 2.39
2800 3085 3.904339 AGGGGAAGCGATAATGACAGTAT 59.096 43.478 0.00 0.00 0.00 2.12
2801 3086 3.305720 AGGGGAAGCGATAATGACAGTA 58.694 45.455 0.00 0.00 0.00 2.74
2802 3087 2.119495 AGGGGAAGCGATAATGACAGT 58.881 47.619 0.00 0.00 0.00 3.55
2803 3088 2.918712 AGGGGAAGCGATAATGACAG 57.081 50.000 0.00 0.00 0.00 3.51
2813 3098 0.181350 AAGGCTCATAAGGGGAAGCG 59.819 55.000 0.00 0.00 0.00 4.68
2935 3221 5.172934 GTCAATACATACGTTTCACCAGGA 58.827 41.667 0.00 0.00 0.00 3.86
2958 3244 8.908786 TGGATTTATGCTATGAAAAGTAGAGG 57.091 34.615 0.00 0.00 0.00 3.69
2982 3268 7.581213 AGAGAGATACAAGTAATCTGGTCTG 57.419 40.000 3.84 0.00 0.00 3.51
3314 3600 3.971245 AAAAACAGTGGTTCTTTGCCA 57.029 38.095 0.00 0.00 35.82 4.92
3338 3624 0.469892 AACTTTGCCCCAAGACCAGG 60.470 55.000 0.00 0.00 0.00 4.45
3681 3969 5.163550 CCGTAGACAACTCAATGTGGAGATA 60.164 44.000 0.00 0.00 38.30 1.98
3684 3972 3.254060 CCGTAGACAACTCAATGTGGAG 58.746 50.000 0.00 0.00 40.79 3.86
3783 4071 5.028549 TCATCTTTGAGTAGGAAGCATCC 57.971 43.478 0.00 0.00 46.98 3.51
3822 4110 7.047891 TCCTAGCAAACGAATTGTGATTAGAT 58.952 34.615 0.00 0.00 41.32 1.98
3866 4154 7.552687 AGCTCGATCAGAAAAACCATAATGTAA 59.447 33.333 0.00 0.00 0.00 2.41
4057 4361 1.670811 GTGCAGGTTCAATATGACCGG 59.329 52.381 0.00 0.00 0.00 5.28
4140 4444 5.813672 TCCAGCTAATACAATACGGTTTCAC 59.186 40.000 0.00 0.00 0.00 3.18
4211 4515 4.035208 CCGTTTTGCTGTACAGAAACTCTT 59.965 41.667 27.08 0.00 32.11 2.85
4247 4590 3.324846 ACAGAACATGAGTTAGTCCAGCA 59.675 43.478 0.00 0.00 38.30 4.41
4249 4592 5.139435 TCACAGAACATGAGTTAGTCCAG 57.861 43.478 0.00 0.00 38.30 3.86
4250 4593 4.021104 CCTCACAGAACATGAGTTAGTCCA 60.021 45.833 0.00 0.00 41.78 4.02
4251 4594 4.499183 CCTCACAGAACATGAGTTAGTCC 58.501 47.826 0.00 0.00 41.78 3.85
4252 4595 4.499183 CCCTCACAGAACATGAGTTAGTC 58.501 47.826 0.00 0.00 41.78 2.59
4253 4596 3.307059 GCCCTCACAGAACATGAGTTAGT 60.307 47.826 0.00 0.00 41.78 2.24
4254 4597 3.265791 GCCCTCACAGAACATGAGTTAG 58.734 50.000 0.00 0.00 41.78 2.34
4255 4598 2.637382 TGCCCTCACAGAACATGAGTTA 59.363 45.455 0.00 0.00 41.78 2.24
4256 4599 1.421268 TGCCCTCACAGAACATGAGTT 59.579 47.619 0.00 0.00 41.78 3.01
4257 4600 1.002888 CTGCCCTCACAGAACATGAGT 59.997 52.381 0.00 0.00 41.78 3.41
4258 4601 1.002888 ACTGCCCTCACAGAACATGAG 59.997 52.381 0.00 0.00 42.79 2.90
4259 4602 1.059098 ACTGCCCTCACAGAACATGA 58.941 50.000 0.00 0.00 40.25 3.07
4260 4603 1.162698 CACTGCCCTCACAGAACATG 58.837 55.000 0.00 0.00 40.25 3.21
4261 4604 1.059098 TCACTGCCCTCACAGAACAT 58.941 50.000 0.00 0.00 40.25 2.71
4262 4605 0.836606 TTCACTGCCCTCACAGAACA 59.163 50.000 0.00 0.00 40.25 3.18
4263 4606 2.191128 ATTCACTGCCCTCACAGAAC 57.809 50.000 0.00 0.00 40.25 3.01
4264 4607 3.264193 ACATATTCACTGCCCTCACAGAA 59.736 43.478 0.00 0.00 40.25 3.02
4265 4608 2.840038 ACATATTCACTGCCCTCACAGA 59.160 45.455 0.00 0.00 40.25 3.41
4266 4609 3.272574 ACATATTCACTGCCCTCACAG 57.727 47.619 0.00 0.00 43.59 3.66
4267 4610 3.264193 AGAACATATTCACTGCCCTCACA 59.736 43.478 0.00 0.00 37.29 3.58
4268 4611 3.624861 CAGAACATATTCACTGCCCTCAC 59.375 47.826 0.00 0.00 37.29 3.51
4269 4612 3.264193 ACAGAACATATTCACTGCCCTCA 59.736 43.478 0.00 0.00 37.29 3.86
4270 4613 3.878778 ACAGAACATATTCACTGCCCTC 58.121 45.455 0.00 0.00 37.29 4.30
4271 4614 4.307032 AACAGAACATATTCACTGCCCT 57.693 40.909 0.00 0.00 37.29 5.19
4272 4615 6.498304 CATTAACAGAACATATTCACTGCCC 58.502 40.000 0.00 0.00 37.29 5.36
4273 4616 5.973565 GCATTAACAGAACATATTCACTGCC 59.026 40.000 0.00 0.00 37.29 4.85
4274 4617 5.973565 GGCATTAACAGAACATATTCACTGC 59.026 40.000 0.00 0.00 37.29 4.40
4275 4618 6.183360 ACGGCATTAACAGAACATATTCACTG 60.183 38.462 0.00 0.00 37.29 3.66
4276 4619 5.880332 ACGGCATTAACAGAACATATTCACT 59.120 36.000 0.00 0.00 37.29 3.41
4277 4620 5.965334 CACGGCATTAACAGAACATATTCAC 59.035 40.000 0.00 0.00 37.29 3.18
4278 4621 5.877564 TCACGGCATTAACAGAACATATTCA 59.122 36.000 0.00 0.00 37.29 2.57
4279 4622 6.257849 TCTCACGGCATTAACAGAACATATTC 59.742 38.462 0.00 0.00 34.78 1.75
4280 4623 6.112734 TCTCACGGCATTAACAGAACATATT 58.887 36.000 0.00 0.00 0.00 1.28
4281 4624 5.670485 TCTCACGGCATTAACAGAACATAT 58.330 37.500 0.00 0.00 0.00 1.78
4282 4625 5.079689 TCTCACGGCATTAACAGAACATA 57.920 39.130 0.00 0.00 0.00 2.29
4283 4626 3.937814 TCTCACGGCATTAACAGAACAT 58.062 40.909 0.00 0.00 0.00 2.71
4284 4627 3.394674 TCTCACGGCATTAACAGAACA 57.605 42.857 0.00 0.00 0.00 3.18
4285 4628 7.709269 TTATATCTCACGGCATTAACAGAAC 57.291 36.000 0.00 0.00 0.00 3.01
4286 4629 7.766738 TGTTTATATCTCACGGCATTAACAGAA 59.233 33.333 0.00 0.00 0.00 3.02
4287 4630 7.269316 TGTTTATATCTCACGGCATTAACAGA 58.731 34.615 0.00 0.00 0.00 3.41
4288 4631 7.477144 TGTTTATATCTCACGGCATTAACAG 57.523 36.000 0.00 0.00 0.00 3.16
4289 4632 7.851387 TTGTTTATATCTCACGGCATTAACA 57.149 32.000 0.00 0.00 0.00 2.41
4290 4633 9.730420 AATTTGTTTATATCTCACGGCATTAAC 57.270 29.630 0.00 0.00 0.00 2.01
4291 4634 9.729023 CAATTTGTTTATATCTCACGGCATTAA 57.271 29.630 0.00 0.00 0.00 1.40
4292 4635 9.114952 TCAATTTGTTTATATCTCACGGCATTA 57.885 29.630 0.00 0.00 0.00 1.90
4293 4636 7.995289 TCAATTTGTTTATATCTCACGGCATT 58.005 30.769 0.00 0.00 0.00 3.56
4294 4637 7.566760 TCAATTTGTTTATATCTCACGGCAT 57.433 32.000 0.00 0.00 0.00 4.40
4295 4638 6.993786 TCAATTTGTTTATATCTCACGGCA 57.006 33.333 0.00 0.00 0.00 5.69
4296 4639 7.417612 ACATCAATTTGTTTATATCTCACGGC 58.582 34.615 0.00 0.00 0.00 5.68
4297 4640 9.225201 CAACATCAATTTGTTTATATCTCACGG 57.775 33.333 0.00 0.00 37.73 4.94
4298 4641 9.986833 TCAACATCAATTTGTTTATATCTCACG 57.013 29.630 0.00 0.00 37.73 4.35
4305 4648 9.979578 AGCTGTTTCAACATCAATTTGTTTATA 57.020 25.926 0.00 0.00 37.73 0.98
4306 4649 8.891671 AGCTGTTTCAACATCAATTTGTTTAT 57.108 26.923 0.00 0.00 37.73 1.40
4307 4650 8.715191 AAGCTGTTTCAACATCAATTTGTTTA 57.285 26.923 0.00 0.00 37.73 2.01
4308 4651 7.614124 AAGCTGTTTCAACATCAATTTGTTT 57.386 28.000 0.00 0.00 37.73 2.83
4309 4652 8.715191 TTAAGCTGTTTCAACATCAATTTGTT 57.285 26.923 0.00 0.00 40.39 2.83
4310 4653 8.715191 TTTAAGCTGTTTCAACATCAATTTGT 57.285 26.923 0.00 0.00 38.41 2.83
4345 4688 6.795399 AGCTTTGAAAAGAAAAATCTGTCGA 58.205 32.000 6.98 0.00 38.28 4.20
4378 4721 7.176515 AGGAAACAACACATTAAGCACATGATA 59.823 33.333 0.00 0.00 0.00 2.15
4379 4722 6.015180 AGGAAACAACACATTAAGCACATGAT 60.015 34.615 0.00 0.00 0.00 2.45
4380 4723 5.301551 AGGAAACAACACATTAAGCACATGA 59.698 36.000 0.00 0.00 0.00 3.07
4428 4771 5.104900 GCTTACCAAGATCTACAAGGAAGGA 60.105 44.000 0.00 0.00 0.00 3.36
4433 4776 5.431765 ACATGCTTACCAAGATCTACAAGG 58.568 41.667 0.00 0.00 0.00 3.61
4525 4868 9.678941 ACAAAAGTTTAGCTTGCTTAAATACTC 57.321 29.630 0.00 0.00 37.52 2.59
4529 4872 8.716646 ACAACAAAAGTTTAGCTTGCTTAAAT 57.283 26.923 0.00 0.00 37.52 1.40
4648 4991 6.220930 ACGCAACAGATAGAAAACACTTCTA 58.779 36.000 0.00 0.00 35.71 2.10
4649 4992 5.057149 ACGCAACAGATAGAAAACACTTCT 58.943 37.500 0.00 0.00 0.00 2.85
4653 4996 5.585500 TGTACGCAACAGATAGAAAACAC 57.415 39.130 0.00 0.00 33.01 3.32
4689 5032 1.539827 GATGCACTTGGTTGTGGTACC 59.460 52.381 4.43 4.43 38.31 3.34
4803 5160 7.994425 TGACTTTGGCTGTTTCTTATAATGA 57.006 32.000 0.00 0.00 0.00 2.57
4817 5174 7.495934 GTCAAGTGTGTATATATGACTTTGGCT 59.504 37.037 0.00 0.00 35.49 4.75
4925 5282 3.175929 CAAAACAAACAACCCACGTCTC 58.824 45.455 0.00 0.00 0.00 3.36
4973 5336 3.730761 GGGGCGATGCGATGATGC 61.731 66.667 0.00 0.00 0.00 3.91
5083 5446 2.648059 CCATGGAATCTGGTCAGTTCC 58.352 52.381 5.56 17.47 38.22 3.62
5103 5478 0.737219 GCAATGATGAGTGGAGTGGC 59.263 55.000 0.00 0.00 0.00 5.01
5117 5492 2.997986 GCAAGAAACAATGGAGGCAATG 59.002 45.455 0.00 0.00 0.00 2.82
5123 5498 6.317789 TGAGTAAAGCAAGAAACAATGGAG 57.682 37.500 0.00 0.00 0.00 3.86
5127 5502 4.584325 TGGCTGAGTAAAGCAAGAAACAAT 59.416 37.500 0.00 0.00 45.43 2.71
5134 5513 1.200948 GGCTTGGCTGAGTAAAGCAAG 59.799 52.381 18.36 0.00 46.46 4.01
5135 5514 1.247567 GGCTTGGCTGAGTAAAGCAA 58.752 50.000 18.36 0.00 46.46 3.91
5232 5617 1.480954 GACCGCTTCTCCATGAGGTTA 59.519 52.381 0.00 0.00 36.53 2.85
5327 5722 1.002868 ATCGGCTGCTGCTCTTGTT 60.003 52.632 15.64 0.00 39.59 2.83
5371 5766 1.821216 AAATAACTCCACGCACCCAG 58.179 50.000 0.00 0.00 0.00 4.45
5516 5923 5.047660 ACAGAGTAACAGAATCTCAGACACC 60.048 44.000 0.00 0.00 0.00 4.16
5551 5962 3.683822 TGGTCGTTCGTACAAAACTGTTT 59.316 39.130 0.00 0.00 0.00 2.83
5552 5963 3.260740 TGGTCGTTCGTACAAAACTGTT 58.739 40.909 6.57 0.00 0.00 3.16
5553 5964 2.891112 TGGTCGTTCGTACAAAACTGT 58.109 42.857 6.57 0.00 0.00 3.55
5554 5965 3.363575 CCATGGTCGTTCGTACAAAACTG 60.364 47.826 2.57 1.95 0.00 3.16
5639 6051 5.777850 TCAAAGAATCACATGCCATATGG 57.222 39.130 18.07 18.07 38.53 2.74
5677 6103 9.964253 CGTGCAAGAATATATCATCATAAAGAC 57.036 33.333 0.00 0.00 0.00 3.01
5678 6104 9.710900 ACGTGCAAGAATATATCATCATAAAGA 57.289 29.630 6.65 0.00 0.00 2.52
5693 6122 3.466836 TCACAAGAGAACGTGCAAGAAT 58.533 40.909 6.65 0.00 33.03 2.40
5696 6125 3.062763 AGATCACAAGAGAACGTGCAAG 58.937 45.455 0.00 0.00 33.03 4.01
5697 6126 3.111853 AGATCACAAGAGAACGTGCAA 57.888 42.857 0.00 0.00 33.03 4.08
5702 6131 5.463392 TCAGAAACAAGATCACAAGAGAACG 59.537 40.000 0.00 0.00 0.00 3.95
5703 6132 6.851222 TCAGAAACAAGATCACAAGAGAAC 57.149 37.500 0.00 0.00 0.00 3.01
5716 6145 4.339247 ACAAACCTCACCATCAGAAACAAG 59.661 41.667 0.00 0.00 0.00 3.16
5733 6162 2.097466 CGACATCAAGGCCATACAAACC 59.903 50.000 5.01 0.00 0.00 3.27
5738 6167 1.299541 CCACGACATCAAGGCCATAC 58.700 55.000 5.01 0.00 0.00 2.39
5759 6188 3.376078 TCCTCGTACGCCACCACC 61.376 66.667 11.24 0.00 0.00 4.61
5777 6206 2.283388 AGCCCAACCAGTGCCATG 60.283 61.111 0.00 0.00 0.00 3.66
5778 6207 2.283388 CAGCCCAACCAGTGCCAT 60.283 61.111 0.00 0.00 0.00 4.40
5781 6210 1.607467 ATTCCAGCCCAACCAGTGC 60.607 57.895 0.00 0.00 0.00 4.40
5857 6295 4.511082 CCTCGTACTCCTACTACAAGCTAC 59.489 50.000 0.00 0.00 0.00 3.58
5860 6298 2.617774 CCCTCGTACTCCTACTACAAGC 59.382 54.545 0.00 0.00 0.00 4.01
5861 6299 3.212685 CCCCTCGTACTCCTACTACAAG 58.787 54.545 0.00 0.00 0.00 3.16
5862 6300 2.092212 CCCCCTCGTACTCCTACTACAA 60.092 54.545 0.00 0.00 0.00 2.41
5863 6301 1.492176 CCCCCTCGTACTCCTACTACA 59.508 57.143 0.00 0.00 0.00 2.74
5864 6302 1.492599 ACCCCCTCGTACTCCTACTAC 59.507 57.143 0.00 0.00 0.00 2.73
5866 6304 0.258194 CACCCCCTCGTACTCCTACT 59.742 60.000 0.00 0.00 0.00 2.57
5869 6307 0.258194 CTACACCCCCTCGTACTCCT 59.742 60.000 0.00 0.00 0.00 3.69
5871 6309 1.390383 GGCTACACCCCCTCGTACTC 61.390 65.000 0.00 0.00 0.00 2.59
5918 6362 1.007038 TTCCTTTCCACCGTCGTCG 60.007 57.895 0.00 0.00 0.00 5.12
5934 6378 2.143876 ACTCCTCTGCTCTCTCCTTC 57.856 55.000 0.00 0.00 0.00 3.46
6009 6473 3.746492 ACGACGAAAACGGTACTAGTAGT 59.254 43.478 8.14 8.14 34.93 2.73
6011 6475 3.120338 CCACGACGAAAACGGTACTAGTA 60.120 47.826 0.00 0.00 34.93 1.82
6012 6476 2.350772 CCACGACGAAAACGGTACTAGT 60.351 50.000 0.00 0.00 34.93 2.57
6013 6477 2.245096 CCACGACGAAAACGGTACTAG 58.755 52.381 0.00 0.00 34.93 2.57
6014 6478 1.665735 GCCACGACGAAAACGGTACTA 60.666 52.381 0.00 0.00 34.93 1.82
6030 6494 2.101415 ACCAAGCAAGAAAGAAAGCCAC 59.899 45.455 0.00 0.00 0.00 5.01
6031 6495 2.362077 GACCAAGCAAGAAAGAAAGCCA 59.638 45.455 0.00 0.00 0.00 4.75
6032 6496 2.288457 GGACCAAGCAAGAAAGAAAGCC 60.288 50.000 0.00 0.00 0.00 4.35
6033 6497 2.605580 CGGACCAAGCAAGAAAGAAAGC 60.606 50.000 0.00 0.00 0.00 3.51
6037 6501 1.227999 CGCGGACCAAGCAAGAAAGA 61.228 55.000 0.00 0.00 34.19 2.52
6185 7602 2.046120 GCCTGCTCTGCTCAGCTT 60.046 61.111 0.00 0.00 40.39 3.74
6186 7603 4.454319 CGCCTGCTCTGCTCAGCT 62.454 66.667 0.00 0.00 40.39 4.24
6188 7605 4.754667 TGCGCCTGCTCTGCTCAG 62.755 66.667 4.18 0.00 43.34 3.35
6224 7642 2.047274 CCCGTGTCACTGCCGAAT 60.047 61.111 0.65 0.00 0.00 3.34
6229 7647 1.500512 TTTTACGCCCGTGTCACTGC 61.501 55.000 3.22 3.01 0.00 4.40
6230 7648 0.233848 GTTTTACGCCCGTGTCACTG 59.766 55.000 3.22 0.00 0.00 3.66
6231 7649 0.105408 AGTTTTACGCCCGTGTCACT 59.895 50.000 3.22 0.00 0.00 3.41
6232 7650 1.782044 TAGTTTTACGCCCGTGTCAC 58.218 50.000 3.22 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.