Multiple sequence alignment - TraesCS5D01G532300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G532300 chr5D 100.000 2521 0 0 1 2521 547429974 547432494 0.000000e+00 4656.0
1 TraesCS5D01G532300 chr5D 87.653 818 85 10 1716 2521 387218227 387219040 0.000000e+00 937.0
2 TraesCS5D01G532300 chr5D 100.000 28 0 0 1663 1690 486134273 486134246 5.000000e-03 52.8
3 TraesCS5D01G532300 chr4A 96.296 1080 27 11 506 1577 621477052 621475978 0.000000e+00 1760.0
4 TraesCS5D01G532300 chr4A 88.943 814 79 7 1716 2521 731063521 731064331 0.000000e+00 994.0
5 TraesCS5D01G532300 chr4A 88.725 816 76 11 1716 2521 729055919 729055110 0.000000e+00 983.0
6 TraesCS5D01G532300 chr4A 93.056 144 10 0 1380 1523 743591666 743591523 7.070000e-51 211.0
7 TraesCS5D01G532300 chr4A 95.192 104 5 0 1563 1666 573631000 573631103 5.580000e-37 165.0
8 TraesCS5D01G532300 chr2D 88.834 815 81 5 1716 2521 5123905 5123092 0.000000e+00 992.0
9 TraesCS5D01G532300 chr2D 93.144 423 18 5 90 505 113042777 113042359 5.960000e-171 610.0
10 TraesCS5D01G532300 chr2D 95.050 101 5 0 1566 1666 532306002 532305902 2.600000e-35 159.0
11 TraesCS5D01G532300 chr7B 88.400 819 83 6 1713 2521 55051618 55052434 0.000000e+00 976.0
12 TraesCS5D01G532300 chr7B 93.137 102 7 0 9 110 633142476 633142375 1.560000e-32 150.0
13 TraesCS5D01G532300 chr7D 88.054 812 87 8 1714 2521 593709644 593710449 0.000000e+00 953.0
14 TraesCS5D01G532300 chr7D 94.713 435 10 6 87 512 399132073 399131643 0.000000e+00 664.0
15 TraesCS5D01G532300 chr6B 87.853 815 86 5 1716 2521 24857311 24856501 0.000000e+00 944.0
16 TraesCS5D01G532300 chr6B 87.700 813 90 6 1716 2521 523060646 523061455 0.000000e+00 939.0
17 TraesCS5D01G532300 chr6B 81.156 398 25 18 9 396 155500953 155500596 8.880000e-70 274.0
18 TraesCS5D01G532300 chr6B 79.328 387 52 18 25 396 268972862 268972489 1.940000e-61 246.0
19 TraesCS5D01G532300 chr6B 92.035 113 8 1 1560 1671 38619704 38619592 9.340000e-35 158.0
20 TraesCS5D01G532300 chr6B 89.916 119 9 2 25 140 54503844 54503962 1.560000e-32 150.0
21 TraesCS5D01G532300 chr1A 87.607 815 90 7 1716 2521 333497544 333496732 0.000000e+00 935.0
22 TraesCS5D01G532300 chr4D 97.907 430 9 0 80 509 25278900 25279329 0.000000e+00 745.0
23 TraesCS5D01G532300 chr4D 95.701 442 14 2 73 509 434912042 434912483 0.000000e+00 706.0
24 TraesCS5D01G532300 chr4D 90.678 118 10 1 1553 1669 54412674 54412557 3.360000e-34 156.0
25 TraesCS5D01G532300 chr2B 95.444 417 15 1 80 496 180876235 180876647 0.000000e+00 662.0
26 TraesCS5D01G532300 chr2B 82.712 295 36 14 1001 1283 95339586 95339295 5.390000e-62 248.0
27 TraesCS5D01G532300 chr2B 94.483 145 8 0 1380 1524 95339208 95339064 9.080000e-55 224.0
28 TraesCS5D01G532300 chr2B 93.056 144 10 0 1380 1523 263184114 263184257 7.070000e-51 211.0
29 TraesCS5D01G532300 chr2B 86.471 170 13 7 25 185 328693760 328693928 7.170000e-41 178.0
30 TraesCS5D01G532300 chr1D 94.601 426 14 4 87 509 63464651 63465070 0.000000e+00 651.0
31 TraesCS5D01G532300 chr5A 91.898 469 29 4 42 509 81707281 81707741 0.000000e+00 647.0
32 TraesCS5D01G532300 chr5A 82.292 288 35 12 1001 1277 659137890 659137608 4.190000e-58 235.0
33 TraesCS5D01G532300 chr5A 90.598 117 9 2 1559 1673 386180227 386180111 1.210000e-33 154.0
34 TraesCS5D01G532300 chr5A 100.000 28 0 0 1663 1690 606845513 606845486 5.000000e-03 52.8
35 TraesCS5D01G532300 chr6D 94.145 427 17 2 87 509 86095901 86096323 0.000000e+00 643.0
36 TraesCS5D01G532300 chr6D 89.256 121 11 2 1558 1678 337606853 337606735 1.560000e-32 150.0
37 TraesCS5D01G532300 chr7A 94.033 419 21 3 87 505 175499802 175499388 1.270000e-177 632.0
38 TraesCS5D01G532300 chr5B 88.943 407 29 5 896 1288 690967301 690967705 2.910000e-134 488.0
39 TraesCS5D01G532300 chr5B 85.251 339 38 7 506 835 690966891 690967226 3.110000e-89 339.0
40 TraesCS5D01G532300 chr5B 90.496 242 18 2 1287 1527 690967858 690968095 5.230000e-82 315.0
41 TraesCS5D01G532300 chr5B 87.302 252 27 2 1287 1537 691285365 691285612 1.480000e-72 283.0
42 TraesCS5D01G532300 chr5B 80.412 388 50 14 25 396 23847272 23847649 3.200000e-69 272.0
43 TraesCS5D01G532300 chr5B 80.362 387 49 18 25 396 684143331 684142957 4.130000e-68 268.0
44 TraesCS5D01G532300 chr5B 93.056 144 10 0 1380 1523 534954517 534954374 7.070000e-51 211.0
45 TraesCS5D01G532300 chr5B 93.137 102 7 0 9 110 287454130 287454029 1.560000e-32 150.0
46 TraesCS5D01G532300 chrUn 83.860 285 32 11 997 1277 100173304 100173030 2.490000e-65 259.0
47 TraesCS5D01G532300 chr4B 79.755 326 42 12 1001 1303 646366906 646367230 5.460000e-52 215.0
48 TraesCS5D01G532300 chr4B 79.672 305 38 12 1022 1303 646280082 646280385 5.500000e-47 198.0
49 TraesCS5D01G532300 chr4B 78.834 326 45 12 1001 1303 646322480 646322804 5.500000e-47 198.0
50 TraesCS5D01G532300 chr4B 78.834 326 45 12 1001 1303 646348020 646348344 5.500000e-47 198.0
51 TraesCS5D01G532300 chr3B 90.278 144 14 0 1380 1523 570490927 570490784 3.310000e-44 189.0
52 TraesCS5D01G532300 chr6A 92.793 111 8 0 1556 1666 600701738 600701848 7.220000e-36 161.0
53 TraesCS5D01G532300 chr6A 94.231 104 6 0 1563 1666 40170252 40170355 2.600000e-35 159.0
54 TraesCS5D01G532300 chr3D 93.519 108 6 1 1560 1666 290583926 290583819 2.600000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G532300 chr5D 547429974 547432494 2520 False 4656.000000 4656 100.0000 1 2521 1 chr5D.!!$F2 2520
1 TraesCS5D01G532300 chr5D 387218227 387219040 813 False 937.000000 937 87.6530 1716 2521 1 chr5D.!!$F1 805
2 TraesCS5D01G532300 chr4A 621475978 621477052 1074 True 1760.000000 1760 96.2960 506 1577 1 chr4A.!!$R1 1071
3 TraesCS5D01G532300 chr4A 731063521 731064331 810 False 994.000000 994 88.9430 1716 2521 1 chr4A.!!$F2 805
4 TraesCS5D01G532300 chr4A 729055110 729055919 809 True 983.000000 983 88.7250 1716 2521 1 chr4A.!!$R2 805
5 TraesCS5D01G532300 chr2D 5123092 5123905 813 True 992.000000 992 88.8340 1716 2521 1 chr2D.!!$R1 805
6 TraesCS5D01G532300 chr7B 55051618 55052434 816 False 976.000000 976 88.4000 1713 2521 1 chr7B.!!$F1 808
7 TraesCS5D01G532300 chr7D 593709644 593710449 805 False 953.000000 953 88.0540 1714 2521 1 chr7D.!!$F1 807
8 TraesCS5D01G532300 chr6B 24856501 24857311 810 True 944.000000 944 87.8530 1716 2521 1 chr6B.!!$R1 805
9 TraesCS5D01G532300 chr6B 523060646 523061455 809 False 939.000000 939 87.7000 1716 2521 1 chr6B.!!$F2 805
10 TraesCS5D01G532300 chr1A 333496732 333497544 812 True 935.000000 935 87.6070 1716 2521 1 chr1A.!!$R1 805
11 TraesCS5D01G532300 chr2B 95339064 95339586 522 True 236.000000 248 88.5975 1001 1524 2 chr2B.!!$R1 523
12 TraesCS5D01G532300 chr5B 690966891 690968095 1204 False 380.666667 488 88.2300 506 1527 3 chr5B.!!$F3 1021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.033504 TTCCTCGCCACAACTGTCTC 59.966 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2142 0.035317 TGTGAGTGTGGCCATCTGTC 59.965 55.0 9.72 4.43 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.475135 GGAGACGCCCCTGCCTTC 62.475 72.222 0.00 0.00 0.00 3.46
46 47 4.475135 GAGACGCCCCTGCCTTCC 62.475 72.222 0.00 0.00 0.00 3.46
48 49 4.475135 GACGCCCCTGCCTTCCTC 62.475 72.222 0.00 0.00 0.00 3.71
53 54 4.785453 CCCTGCCTTCCTCGCCAC 62.785 72.222 0.00 0.00 0.00 5.01
54 55 4.020617 CCTGCCTTCCTCGCCACA 62.021 66.667 0.00 0.00 0.00 4.17
55 56 2.032528 CTGCCTTCCTCGCCACAA 59.967 61.111 0.00 0.00 0.00 3.33
56 57 2.281484 TGCCTTCCTCGCCACAAC 60.281 61.111 0.00 0.00 0.00 3.32
57 58 2.032681 GCCTTCCTCGCCACAACT 59.967 61.111 0.00 0.00 0.00 3.16
58 59 2.328099 GCCTTCCTCGCCACAACTG 61.328 63.158 0.00 0.00 0.00 3.16
59 60 1.071471 CCTTCCTCGCCACAACTGT 59.929 57.895 0.00 0.00 0.00 3.55
60 61 0.951040 CCTTCCTCGCCACAACTGTC 60.951 60.000 0.00 0.00 0.00 3.51
61 62 0.034059 CTTCCTCGCCACAACTGTCT 59.966 55.000 0.00 0.00 0.00 3.41
62 63 0.033504 TTCCTCGCCACAACTGTCTC 59.966 55.000 0.00 0.00 0.00 3.36
63 64 1.374758 CCTCGCCACAACTGTCTCC 60.375 63.158 0.00 0.00 0.00 3.71
64 65 1.374758 CTCGCCACAACTGTCTCCC 60.375 63.158 0.00 0.00 0.00 4.30
65 66 1.821061 CTCGCCACAACTGTCTCCCT 61.821 60.000 0.00 0.00 0.00 4.20
66 67 1.374758 CGCCACAACTGTCTCCCTC 60.375 63.158 0.00 0.00 0.00 4.30
67 68 1.374758 GCCACAACTGTCTCCCTCG 60.375 63.158 0.00 0.00 0.00 4.63
68 69 1.374758 CCACAACTGTCTCCCTCGC 60.375 63.158 0.00 0.00 0.00 5.03
69 70 1.374758 CACAACTGTCTCCCTCGCC 60.375 63.158 0.00 0.00 0.00 5.54
70 71 2.125912 CAACTGTCTCCCTCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
71 72 2.600769 AACTGTCTCCCTCGCCGT 60.601 61.111 0.00 0.00 0.00 5.68
72 73 2.637383 AACTGTCTCCCTCGCCGTC 61.637 63.158 0.00 0.00 0.00 4.79
73 74 3.062466 CTGTCTCCCTCGCCGTCA 61.062 66.667 0.00 0.00 0.00 4.35
74 75 3.343788 CTGTCTCCCTCGCCGTCAC 62.344 68.421 0.00 0.00 0.00 3.67
75 76 4.131088 GTCTCCCTCGCCGTCACC 62.131 72.222 0.00 0.00 0.00 4.02
145 146 4.838152 CCACCACCGGAGCCATCG 62.838 72.222 9.46 0.00 0.00 3.84
146 147 4.082523 CACCACCGGAGCCATCGT 62.083 66.667 9.46 0.00 0.00 3.73
147 148 3.771160 ACCACCGGAGCCATCGTC 61.771 66.667 9.46 0.00 0.00 4.20
148 149 3.461773 CCACCGGAGCCATCGTCT 61.462 66.667 9.46 0.00 0.00 4.18
149 150 2.202797 CACCGGAGCCATCGTCTG 60.203 66.667 9.46 0.00 0.00 3.51
150 151 2.680352 ACCGGAGCCATCGTCTGT 60.680 61.111 9.46 0.00 0.00 3.41
151 152 1.379443 ACCGGAGCCATCGTCTGTA 60.379 57.895 9.46 0.00 0.00 2.74
152 153 0.968901 ACCGGAGCCATCGTCTGTAA 60.969 55.000 9.46 0.00 0.00 2.41
153 154 0.249073 CCGGAGCCATCGTCTGTAAG 60.249 60.000 0.00 0.00 0.00 2.34
154 155 0.872021 CGGAGCCATCGTCTGTAAGC 60.872 60.000 0.00 0.00 0.00 3.09
155 156 0.175760 GGAGCCATCGTCTGTAAGCA 59.824 55.000 0.00 0.00 0.00 3.91
156 157 1.281899 GAGCCATCGTCTGTAAGCAC 58.718 55.000 0.00 0.00 0.00 4.40
157 158 0.108138 AGCCATCGTCTGTAAGCACC 60.108 55.000 0.00 0.00 0.00 5.01
158 159 1.090052 GCCATCGTCTGTAAGCACCC 61.090 60.000 0.00 0.00 0.00 4.61
159 160 0.462047 CCATCGTCTGTAAGCACCCC 60.462 60.000 0.00 0.00 0.00 4.95
160 161 0.537188 CATCGTCTGTAAGCACCCCT 59.463 55.000 0.00 0.00 0.00 4.79
161 162 0.824759 ATCGTCTGTAAGCACCCCTC 59.175 55.000 0.00 0.00 0.00 4.30
162 163 1.218316 CGTCTGTAAGCACCCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
163 164 1.258445 CGTCTGTAAGCACCCCTCCT 61.258 60.000 0.00 0.00 0.00 3.69
164 165 0.537653 GTCTGTAAGCACCCCTCCTC 59.462 60.000 0.00 0.00 0.00 3.71
165 166 0.413832 TCTGTAAGCACCCCTCCTCT 59.586 55.000 0.00 0.00 0.00 3.69
166 167 0.827368 CTGTAAGCACCCCTCCTCTC 59.173 60.000 0.00 0.00 0.00 3.20
167 168 0.413832 TGTAAGCACCCCTCCTCTCT 59.586 55.000 0.00 0.00 0.00 3.10
168 169 1.116308 GTAAGCACCCCTCCTCTCTC 58.884 60.000 0.00 0.00 0.00 3.20
169 170 1.011595 TAAGCACCCCTCCTCTCTCT 58.988 55.000 0.00 0.00 0.00 3.10
170 171 0.325203 AAGCACCCCTCCTCTCTCTC 60.325 60.000 0.00 0.00 0.00 3.20
171 172 1.221213 AGCACCCCTCCTCTCTCTCT 61.221 60.000 0.00 0.00 0.00 3.10
172 173 0.755327 GCACCCCTCCTCTCTCTCTC 60.755 65.000 0.00 0.00 0.00 3.20
173 174 0.926293 CACCCCTCCTCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
174 175 1.133792 CACCCCTCCTCTCTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
175 176 1.275002 ACCCCTCCTCTCTCTCTCTCT 60.275 57.143 0.00 0.00 0.00 3.10
176 177 1.421646 CCCCTCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
177 178 2.126882 CCCTCCTCTCTCTCTCTCTCA 58.873 57.143 0.00 0.00 0.00 3.27
178 179 2.713167 CCCTCCTCTCTCTCTCTCTCAT 59.287 54.545 0.00 0.00 0.00 2.90
179 180 3.497405 CCCTCCTCTCTCTCTCTCTCATG 60.497 56.522 0.00 0.00 0.00 3.07
180 181 3.144506 CTCCTCTCTCTCTCTCTCATGC 58.855 54.545 0.00 0.00 0.00 4.06
181 182 2.509131 TCCTCTCTCTCTCTCTCATGCA 59.491 50.000 0.00 0.00 0.00 3.96
182 183 3.138839 TCCTCTCTCTCTCTCTCATGCAT 59.861 47.826 0.00 0.00 0.00 3.96
183 184 4.350520 TCCTCTCTCTCTCTCTCATGCATA 59.649 45.833 0.00 0.00 0.00 3.14
184 185 4.698780 CCTCTCTCTCTCTCTCATGCATAG 59.301 50.000 0.00 0.00 0.00 2.23
185 186 4.074259 TCTCTCTCTCTCTCATGCATAGC 58.926 47.826 0.00 0.00 0.00 2.97
186 187 3.822167 CTCTCTCTCTCTCATGCATAGCA 59.178 47.826 0.00 0.00 44.86 3.49
187 188 3.569277 TCTCTCTCTCTCATGCATAGCAC 59.431 47.826 0.00 0.00 43.04 4.40
188 189 3.294214 TCTCTCTCTCATGCATAGCACA 58.706 45.455 0.00 0.00 43.04 4.57
189 190 3.703052 TCTCTCTCTCATGCATAGCACAA 59.297 43.478 0.00 0.00 43.04 3.33
190 191 4.161001 TCTCTCTCTCATGCATAGCACAAA 59.839 41.667 0.00 0.00 43.04 2.83
191 192 4.186926 TCTCTCTCATGCATAGCACAAAC 58.813 43.478 0.00 0.00 43.04 2.93
192 193 3.937079 CTCTCTCATGCATAGCACAAACA 59.063 43.478 0.00 0.00 43.04 2.83
193 194 4.520179 TCTCTCATGCATAGCACAAACAT 58.480 39.130 0.00 0.00 43.04 2.71
194 195 4.945543 TCTCTCATGCATAGCACAAACATT 59.054 37.500 0.00 0.00 43.04 2.71
195 196 4.989044 TCTCATGCATAGCACAAACATTG 58.011 39.130 0.00 0.00 43.04 2.82
196 197 4.109766 CTCATGCATAGCACAAACATTGG 58.890 43.478 0.00 0.00 43.04 3.16
197 198 3.762823 TCATGCATAGCACAAACATTGGA 59.237 39.130 0.00 0.00 43.04 3.53
198 199 3.574284 TGCATAGCACAAACATTGGAC 57.426 42.857 0.00 0.00 31.71 4.02
199 200 2.889678 TGCATAGCACAAACATTGGACA 59.110 40.909 0.00 0.00 31.71 4.02
200 201 3.510753 TGCATAGCACAAACATTGGACAT 59.489 39.130 0.00 0.00 31.71 3.06
201 202 4.704057 TGCATAGCACAAACATTGGACATA 59.296 37.500 0.00 0.00 31.71 2.29
202 203 5.036737 GCATAGCACAAACATTGGACATAC 58.963 41.667 0.00 0.00 34.12 2.39
203 204 5.163622 GCATAGCACAAACATTGGACATACT 60.164 40.000 0.00 0.00 34.12 2.12
204 205 6.038161 GCATAGCACAAACATTGGACATACTA 59.962 38.462 0.00 0.00 34.12 1.82
205 206 7.415095 GCATAGCACAAACATTGGACATACTAA 60.415 37.037 0.00 0.00 34.12 2.24
206 207 6.254281 AGCACAAACATTGGACATACTAAC 57.746 37.500 0.00 0.00 34.12 2.34
207 208 6.003950 AGCACAAACATTGGACATACTAACT 58.996 36.000 0.00 0.00 34.12 2.24
208 209 7.165485 AGCACAAACATTGGACATACTAACTA 58.835 34.615 0.00 0.00 34.12 2.24
209 210 7.334421 AGCACAAACATTGGACATACTAACTAG 59.666 37.037 0.00 0.00 34.12 2.57
210 211 7.464358 CACAAACATTGGACATACTAACTAGC 58.536 38.462 0.00 0.00 34.12 3.42
211 212 7.334421 CACAAACATTGGACATACTAACTAGCT 59.666 37.037 0.00 0.00 34.12 3.32
212 213 8.537016 ACAAACATTGGACATACTAACTAGCTA 58.463 33.333 0.00 0.00 34.12 3.32
213 214 9.035607 CAAACATTGGACATACTAACTAGCTAG 57.964 37.037 19.44 19.44 0.00 3.42
214 215 7.291411 ACATTGGACATACTAACTAGCTAGG 57.709 40.000 24.35 9.60 0.00 3.02
215 216 6.839657 ACATTGGACATACTAACTAGCTAGGT 59.160 38.462 24.35 20.96 0.00 3.08
216 217 7.344871 ACATTGGACATACTAACTAGCTAGGTT 59.655 37.037 24.35 17.03 0.00 3.50
217 218 8.857098 CATTGGACATACTAACTAGCTAGGTTA 58.143 37.037 24.35 17.22 0.00 2.85
218 219 8.827832 TTGGACATACTAACTAGCTAGGTTAA 57.172 34.615 24.35 7.70 0.00 2.01
219 220 8.230472 TGGACATACTAACTAGCTAGGTTAAC 57.770 38.462 24.35 0.00 0.00 2.01
220 221 8.057623 TGGACATACTAACTAGCTAGGTTAACT 58.942 37.037 24.35 10.35 0.00 2.24
221 222 9.566432 GGACATACTAACTAGCTAGGTTAACTA 57.434 37.037 24.35 1.73 0.00 2.24
253 254 9.969001 ATTAGGTTAATTTTCTAGGTTAGTGCA 57.031 29.630 0.00 0.00 0.00 4.57
254 255 9.796180 TTAGGTTAATTTTCTAGGTTAGTGCAA 57.204 29.630 0.00 0.00 0.00 4.08
255 256 8.700439 AGGTTAATTTTCTAGGTTAGTGCAAA 57.300 30.769 0.00 0.00 0.00 3.68
256 257 9.138596 AGGTTAATTTTCTAGGTTAGTGCAAAA 57.861 29.630 0.00 0.00 0.00 2.44
257 258 9.752961 GGTTAATTTTCTAGGTTAGTGCAAAAA 57.247 29.630 0.00 0.00 0.00 1.94
263 264 8.685838 TTTCTAGGTTAGTGCAAAAATGTAGT 57.314 30.769 0.00 0.00 0.00 2.73
264 265 8.685838 TTCTAGGTTAGTGCAAAAATGTAGTT 57.314 30.769 0.00 0.00 0.00 2.24
265 266 9.781633 TTCTAGGTTAGTGCAAAAATGTAGTTA 57.218 29.630 0.00 0.00 0.00 2.24
266 267 9.431887 TCTAGGTTAGTGCAAAAATGTAGTTAG 57.568 33.333 0.00 0.00 0.00 2.34
267 268 7.448748 AGGTTAGTGCAAAAATGTAGTTAGG 57.551 36.000 0.00 0.00 0.00 2.69
268 269 6.433093 AGGTTAGTGCAAAAATGTAGTTAGGG 59.567 38.462 0.00 0.00 0.00 3.53
269 270 4.783764 AGTGCAAAAATGTAGTTAGGGC 57.216 40.909 0.00 0.00 0.00 5.19
270 271 4.407365 AGTGCAAAAATGTAGTTAGGGCT 58.593 39.130 0.00 0.00 0.00 5.19
271 272 4.832823 AGTGCAAAAATGTAGTTAGGGCTT 59.167 37.500 0.00 0.00 0.00 4.35
272 273 5.304357 AGTGCAAAAATGTAGTTAGGGCTTT 59.696 36.000 0.00 0.00 0.00 3.51
273 274 5.405269 GTGCAAAAATGTAGTTAGGGCTTTG 59.595 40.000 0.00 0.00 0.00 2.77
274 275 5.303078 TGCAAAAATGTAGTTAGGGCTTTGA 59.697 36.000 0.00 0.00 0.00 2.69
275 276 5.633601 GCAAAAATGTAGTTAGGGCTTTGAC 59.366 40.000 0.00 0.00 0.00 3.18
276 277 6.737346 GCAAAAATGTAGTTAGGGCTTTGACA 60.737 38.462 0.00 0.00 0.00 3.58
277 278 6.575162 AAAATGTAGTTAGGGCTTTGACAG 57.425 37.500 0.00 0.00 0.00 3.51
278 279 5.499004 AATGTAGTTAGGGCTTTGACAGA 57.501 39.130 0.00 0.00 0.00 3.41
279 280 4.537135 TGTAGTTAGGGCTTTGACAGAG 57.463 45.455 0.00 0.00 0.00 3.35
280 281 4.157246 TGTAGTTAGGGCTTTGACAGAGA 58.843 43.478 0.00 0.00 0.00 3.10
281 282 4.591498 TGTAGTTAGGGCTTTGACAGAGAA 59.409 41.667 0.00 0.00 0.00 2.87
282 283 4.009370 AGTTAGGGCTTTGACAGAGAAC 57.991 45.455 0.00 0.00 0.00 3.01
283 284 3.648545 AGTTAGGGCTTTGACAGAGAACT 59.351 43.478 0.00 0.00 0.00 3.01
284 285 4.838986 AGTTAGGGCTTTGACAGAGAACTA 59.161 41.667 0.00 0.00 0.00 2.24
285 286 3.971245 AGGGCTTTGACAGAGAACTAG 57.029 47.619 0.00 0.00 0.00 2.57
286 287 3.243724 AGGGCTTTGACAGAGAACTAGT 58.756 45.455 0.00 0.00 0.00 2.57
287 288 3.648545 AGGGCTTTGACAGAGAACTAGTT 59.351 43.478 8.13 8.13 0.00 2.24
288 289 4.838986 AGGGCTTTGACAGAGAACTAGTTA 59.161 41.667 8.42 0.00 0.00 2.24
289 290 5.046950 AGGGCTTTGACAGAGAACTAGTTAG 60.047 44.000 8.42 0.00 0.00 2.34
290 291 5.172205 GGCTTTGACAGAGAACTAGTTAGG 58.828 45.833 8.42 1.13 0.00 2.69
291 292 5.279556 GGCTTTGACAGAGAACTAGTTAGGT 60.280 44.000 8.42 4.46 0.00 3.08
292 293 6.224584 GCTTTGACAGAGAACTAGTTAGGTT 58.775 40.000 8.42 0.00 0.00 3.50
293 294 7.376615 GCTTTGACAGAGAACTAGTTAGGTTA 58.623 38.462 8.42 0.00 0.00 2.85
294 295 7.871463 GCTTTGACAGAGAACTAGTTAGGTTAA 59.129 37.037 8.42 5.07 0.00 2.01
295 296 9.194271 CTTTGACAGAGAACTAGTTAGGTTAAC 57.806 37.037 8.42 0.00 38.94 2.01
297 298 9.578576 TTGACAGAGAACTAGTTAGGTTAACTA 57.421 33.333 8.42 8.07 46.53 2.24
344 345 6.619329 AAAATTATTTAGGGCTTTGGCAGA 57.381 33.333 0.00 0.00 40.87 4.26
345 346 5.859205 AATTATTTAGGGCTTTGGCAGAG 57.141 39.130 0.00 0.00 40.87 3.35
346 347 4.584638 TTATTTAGGGCTTTGGCAGAGA 57.415 40.909 9.54 0.00 40.87 3.10
347 348 2.969821 TTTAGGGCTTTGGCAGAGAA 57.030 45.000 9.54 0.00 40.87 2.87
348 349 2.200373 TTAGGGCTTTGGCAGAGAAC 57.800 50.000 9.54 0.46 40.87 3.01
349 350 1.362224 TAGGGCTTTGGCAGAGAACT 58.638 50.000 9.54 8.03 40.87 3.01
350 351 1.362224 AGGGCTTTGGCAGAGAACTA 58.638 50.000 9.54 0.00 40.87 2.24
351 352 1.280421 AGGGCTTTGGCAGAGAACTAG 59.720 52.381 9.54 0.00 40.87 2.57
352 353 1.090728 GGCTTTGGCAGAGAACTAGC 58.909 55.000 9.54 0.97 40.87 3.42
353 354 1.339535 GGCTTTGGCAGAGAACTAGCT 60.340 52.381 9.54 0.00 40.87 3.32
354 355 2.093447 GGCTTTGGCAGAGAACTAGCTA 60.093 50.000 9.54 0.00 40.87 3.32
355 356 3.194062 GCTTTGGCAGAGAACTAGCTAG 58.806 50.000 19.44 19.44 38.54 3.42
356 357 3.791245 CTTTGGCAGAGAACTAGCTAGG 58.209 50.000 24.35 6.87 0.00 3.02
357 358 2.534042 TGGCAGAGAACTAGCTAGGT 57.466 50.000 24.35 19.20 0.00 3.08
358 359 2.821437 TGGCAGAGAACTAGCTAGGTT 58.179 47.619 24.35 15.38 0.00 3.50
359 360 3.173965 TGGCAGAGAACTAGCTAGGTTT 58.826 45.455 24.35 13.96 0.00 3.27
360 361 4.350245 TGGCAGAGAACTAGCTAGGTTTA 58.650 43.478 24.35 0.00 0.00 2.01
361 362 4.159879 TGGCAGAGAACTAGCTAGGTTTAC 59.840 45.833 24.35 12.96 0.00 2.01
362 363 4.403113 GGCAGAGAACTAGCTAGGTTTACT 59.597 45.833 24.35 11.74 0.00 2.24
363 364 5.593502 GGCAGAGAACTAGCTAGGTTTACTA 59.406 44.000 24.35 0.00 0.00 1.82
406 407 4.976540 AGGTAAACTAGGTCAACAAGCT 57.023 40.909 0.00 0.00 39.57 3.74
407 408 7.166691 CTAGGTAAACTAGGTCAACAAGCTA 57.833 40.000 0.00 0.00 44.50 3.32
415 416 4.976540 AGGTCAACAAGCTAGGTTAACT 57.023 40.909 6.90 0.00 32.74 2.24
417 418 6.429521 AGGTCAACAAGCTAGGTTAACTAA 57.570 37.500 6.90 0.00 32.74 2.24
418 419 6.228995 AGGTCAACAAGCTAGGTTAACTAAC 58.771 40.000 6.90 2.86 32.74 2.34
419 420 6.042897 AGGTCAACAAGCTAGGTTAACTAACT 59.957 38.462 6.90 0.00 33.62 2.24
420 421 7.234166 AGGTCAACAAGCTAGGTTAACTAACTA 59.766 37.037 6.90 0.00 33.62 2.24
421 422 7.544915 GGTCAACAAGCTAGGTTAACTAACTAG 59.455 40.741 6.90 8.94 36.47 2.57
422 423 7.063191 GTCAACAAGCTAGGTTAACTAACTAGC 59.937 40.741 23.89 23.89 39.90 3.42
423 424 6.854091 ACAAGCTAGGTTAACTAACTAGCT 57.146 37.500 26.39 26.39 44.87 3.32
424 425 7.951347 ACAAGCTAGGTTAACTAACTAGCTA 57.049 36.000 29.46 12.66 43.74 3.32
425 426 7.998580 ACAAGCTAGGTTAACTAACTAGCTAG 58.001 38.462 29.46 19.44 43.74 3.42
426 427 7.068470 ACAAGCTAGGTTAACTAACTAGCTAGG 59.932 40.741 29.46 26.36 43.74 3.02
427 428 6.671605 AGCTAGGTTAACTAACTAGCTAGGT 58.328 40.000 28.76 20.96 43.31 3.08
428 429 7.124721 AGCTAGGTTAACTAACTAGCTAGGTT 58.875 38.462 28.76 19.23 43.31 3.50
429 430 8.277918 AGCTAGGTTAACTAACTAGCTAGGTTA 58.722 37.037 28.76 18.30 43.31 2.85
430 431 8.907885 GCTAGGTTAACTAACTAGCTAGGTTAA 58.092 37.037 24.35 22.16 38.45 2.01
438 439 9.445878 AACTAACTAGCTAGGTTAATTTGGTTC 57.554 33.333 24.35 0.00 0.00 3.62
439 440 6.980051 AACTAGCTAGGTTAATTTGGTTCG 57.020 37.500 24.35 0.00 0.00 3.95
440 441 6.046290 ACTAGCTAGGTTAATTTGGTTCGT 57.954 37.500 24.35 0.00 0.00 3.85
441 442 6.470278 ACTAGCTAGGTTAATTTGGTTCGTT 58.530 36.000 24.35 0.00 0.00 3.85
442 443 7.614494 ACTAGCTAGGTTAATTTGGTTCGTTA 58.386 34.615 24.35 0.00 0.00 3.18
443 444 6.980051 AGCTAGGTTAATTTGGTTCGTTAG 57.020 37.500 0.00 0.00 0.00 2.34
444 445 5.878669 AGCTAGGTTAATTTGGTTCGTTAGG 59.121 40.000 0.00 0.00 0.00 2.69
445 446 5.645067 GCTAGGTTAATTTGGTTCGTTAGGT 59.355 40.000 0.00 0.00 0.00 3.08
446 447 6.149973 GCTAGGTTAATTTGGTTCGTTAGGTT 59.850 38.462 0.00 0.00 0.00 3.50
447 448 7.334171 GCTAGGTTAATTTGGTTCGTTAGGTTA 59.666 37.037 0.00 0.00 0.00 2.85
448 449 9.218440 CTAGGTTAATTTGGTTCGTTAGGTTAA 57.782 33.333 0.00 0.00 0.00 2.01
449 450 7.874940 AGGTTAATTTGGTTCGTTAGGTTAAC 58.125 34.615 0.00 0.00 35.37 2.01
450 451 7.501892 AGGTTAATTTGGTTCGTTAGGTTAACA 59.498 33.333 8.10 0.00 38.57 2.41
451 452 8.134261 GGTTAATTTGGTTCGTTAGGTTAACAA 58.866 33.333 8.10 0.00 38.57 2.83
452 453 9.172820 GTTAATTTGGTTCGTTAGGTTAACAAG 57.827 33.333 8.10 0.00 38.57 3.16
453 454 4.816786 TTGGTTCGTTAGGTTAACAAGC 57.183 40.909 8.10 2.40 38.57 4.01
454 455 4.075963 TGGTTCGTTAGGTTAACAAGCT 57.924 40.909 8.10 0.00 42.74 3.74
455 456 5.212532 TGGTTCGTTAGGTTAACAAGCTA 57.787 39.130 8.10 0.00 40.27 3.32
456 457 5.232463 TGGTTCGTTAGGTTAACAAGCTAG 58.768 41.667 8.10 0.00 41.91 3.42
457 458 4.628766 GGTTCGTTAGGTTAACAAGCTAGG 59.371 45.833 8.10 0.00 41.91 3.02
458 459 5.233225 GTTCGTTAGGTTAACAAGCTAGGT 58.767 41.667 8.10 0.00 41.91 3.08
459 460 5.473066 TCGTTAGGTTAACAAGCTAGGTT 57.527 39.130 8.10 0.12 41.91 3.50
460 461 6.588719 TCGTTAGGTTAACAAGCTAGGTTA 57.411 37.500 6.90 6.77 41.91 2.85
461 462 6.991938 TCGTTAGGTTAACAAGCTAGGTTAA 58.008 36.000 15.76 15.76 41.91 2.01
475 476 5.435820 CTAGGTTAACTAGGTTCGCTAGG 57.564 47.826 5.42 0.00 44.50 3.02
476 477 3.706183 AGGTTAACTAGGTTCGCTAGGT 58.294 45.455 5.42 0.00 0.00 3.08
477 478 4.092279 AGGTTAACTAGGTTCGCTAGGTT 58.908 43.478 5.42 0.00 0.00 3.50
478 479 5.264395 AGGTTAACTAGGTTCGCTAGGTTA 58.736 41.667 5.42 0.00 0.00 2.85
479 480 5.359292 AGGTTAACTAGGTTCGCTAGGTTAG 59.641 44.000 5.42 0.00 0.00 2.34
480 481 5.358160 GGTTAACTAGGTTCGCTAGGTTAGA 59.642 44.000 5.42 0.00 0.00 2.10
481 482 6.459435 GGTTAACTAGGTTCGCTAGGTTAGAG 60.459 46.154 5.42 0.00 0.00 2.43
482 483 3.553904 ACTAGGTTCGCTAGGTTAGAGG 58.446 50.000 0.00 0.00 0.00 3.69
483 484 2.822707 AGGTTCGCTAGGTTAGAGGA 57.177 50.000 0.00 0.00 0.00 3.71
484 485 3.097342 AGGTTCGCTAGGTTAGAGGAA 57.903 47.619 0.00 0.00 0.00 3.36
485 486 3.438183 AGGTTCGCTAGGTTAGAGGAAA 58.562 45.455 0.00 0.00 0.00 3.13
486 487 3.836562 AGGTTCGCTAGGTTAGAGGAAAA 59.163 43.478 0.00 0.00 0.00 2.29
487 488 4.285260 AGGTTCGCTAGGTTAGAGGAAAAA 59.715 41.667 0.00 0.00 0.00 1.94
488 489 5.045797 AGGTTCGCTAGGTTAGAGGAAAAAT 60.046 40.000 0.00 0.00 0.00 1.82
489 490 5.646793 GGTTCGCTAGGTTAGAGGAAAAATT 59.353 40.000 0.00 0.00 0.00 1.82
490 491 6.150641 GGTTCGCTAGGTTAGAGGAAAAATTT 59.849 38.462 0.00 0.00 0.00 1.82
491 492 7.335171 GGTTCGCTAGGTTAGAGGAAAAATTTA 59.665 37.037 0.00 0.00 0.00 1.40
492 493 8.890718 GTTCGCTAGGTTAGAGGAAAAATTTAT 58.109 33.333 0.00 0.00 0.00 1.40
493 494 9.457436 TTCGCTAGGTTAGAGGAAAAATTTATT 57.543 29.630 0.00 0.00 0.00 1.40
494 495 9.457436 TCGCTAGGTTAGAGGAAAAATTTATTT 57.543 29.630 0.00 0.00 0.00 1.40
500 501 9.350357 GGTTAGAGGAAAAATTTATTTTCGACC 57.650 33.333 7.37 6.01 38.92 4.79
501 502 9.902196 GTTAGAGGAAAAATTTATTTTCGACCA 57.098 29.630 14.75 0.00 38.92 4.02
502 503 9.902196 TTAGAGGAAAAATTTATTTTCGACCAC 57.098 29.630 14.75 11.11 38.92 4.16
503 504 8.178313 AGAGGAAAAATTTATTTTCGACCACT 57.822 30.769 14.75 12.36 38.92 4.00
504 505 9.292195 AGAGGAAAAATTTATTTTCGACCACTA 57.708 29.630 14.75 0.00 38.92 2.74
621 624 7.373493 ACATGTTCATTCTGAAACTGGATTTC 58.627 34.615 0.00 0.00 46.07 2.17
652 662 8.552296 AGACAATTCTGGAACTGGAAATATAGT 58.448 33.333 0.00 0.00 0.00 2.12
862 913 0.533491 TGGTCCTAACGAACCCGATG 59.467 55.000 0.00 0.00 39.50 3.84
866 917 0.533491 CCTAACGAACCCGATGGACA 59.467 55.000 0.00 0.00 39.50 4.02
875 926 1.342474 ACCCGATGGACACTGAGAGAT 60.342 52.381 0.00 0.00 34.81 2.75
888 939 3.083997 GAGATGTCCACCCCGCCT 61.084 66.667 0.00 0.00 0.00 5.52
889 940 2.610859 AGATGTCCACCCCGCCTT 60.611 61.111 0.00 0.00 0.00 4.35
890 941 2.124695 GATGTCCACCCCGCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
891 942 2.933287 ATGTCCACCCCGCCTTCA 60.933 61.111 0.00 0.00 0.00 3.02
892 943 2.478335 GATGTCCACCCCGCCTTCAA 62.478 60.000 0.00 0.00 0.00 2.69
893 944 2.359975 GTCCACCCCGCCTTCAAG 60.360 66.667 0.00 0.00 0.00 3.02
894 945 3.646715 TCCACCCCGCCTTCAAGG 61.647 66.667 0.00 0.00 38.80 3.61
961 1012 2.904131 CCCGCTTCCTCCTTCCTC 59.096 66.667 0.00 0.00 0.00 3.71
1142 1197 1.075482 CTTCTTGCCCAGGCCTTCA 59.925 57.895 0.00 0.00 41.09 3.02
1377 1604 0.883153 TTGCTCATGTCATGTGTGCC 59.117 50.000 12.54 0.00 35.76 5.01
1385 1612 0.813184 GTCATGTGTGCCCTGAATGG 59.187 55.000 0.00 0.00 0.00 3.16
1580 1809 7.657023 AATAGTTATCAAGTACTTCCTCCGT 57.343 36.000 4.77 0.00 0.00 4.69
1581 1810 5.997384 AGTTATCAAGTACTTCCTCCGTT 57.003 39.130 4.77 0.00 0.00 4.44
1582 1811 5.963594 AGTTATCAAGTACTTCCTCCGTTC 58.036 41.667 4.77 0.00 0.00 3.95
1583 1812 3.889520 ATCAAGTACTTCCTCCGTTCC 57.110 47.619 4.77 0.00 0.00 3.62
1584 1813 2.600790 TCAAGTACTTCCTCCGTTCCA 58.399 47.619 4.77 0.00 0.00 3.53
1585 1814 2.967201 TCAAGTACTTCCTCCGTTCCAA 59.033 45.455 4.77 0.00 0.00 3.53
1586 1815 3.388676 TCAAGTACTTCCTCCGTTCCAAA 59.611 43.478 4.77 0.00 0.00 3.28
1587 1816 4.131596 CAAGTACTTCCTCCGTTCCAAAA 58.868 43.478 4.77 0.00 0.00 2.44
1588 1817 4.635699 AGTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
1589 1818 5.750352 AGTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
1590 1819 5.731591 AGTACTTCCTCCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
1591 1820 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1592 1821 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1593 1822 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1594 1823 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1595 1824 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
1596 1825 4.469945 TCCTCCGTTCCAAAATAGATGACT 59.530 41.667 0.00 0.00 0.00 3.41
1597 1826 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1598 1827 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1599 1828 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1600 1829 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1601 1830 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1602 1831 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1603 1832 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1604 1833 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1605 1834 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1606 1835 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1607 1836 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1608 1837 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1639 1868 9.762933 TTAGTACAAAGTTAATACAAAGTCGGT 57.237 29.630 0.00 0.00 0.00 4.69
1640 1869 8.667076 AGTACAAAGTTAATACAAAGTCGGTT 57.333 30.769 0.00 0.00 0.00 4.44
1641 1870 8.768019 AGTACAAAGTTAATACAAAGTCGGTTC 58.232 33.333 0.00 0.00 0.00 3.62
1642 1871 7.556733 ACAAAGTTAATACAAAGTCGGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
1643 1872 8.161699 ACAAAGTTAATACAAAGTCGGTTCAT 57.838 30.769 0.00 0.00 0.00 2.57
1644 1873 8.287503 ACAAAGTTAATACAAAGTCGGTTCATC 58.712 33.333 0.00 0.00 0.00 2.92
1645 1874 8.504005 CAAAGTTAATACAAAGTCGGTTCATCT 58.496 33.333 0.00 0.00 0.00 2.90
1646 1875 9.715121 AAAGTTAATACAAAGTCGGTTCATCTA 57.285 29.630 0.00 0.00 0.00 1.98
1647 1876 9.886132 AAGTTAATACAAAGTCGGTTCATCTAT 57.114 29.630 0.00 0.00 0.00 1.98
1648 1877 9.886132 AGTTAATACAAAGTCGGTTCATCTATT 57.114 29.630 0.00 0.00 0.00 1.73
1654 1883 8.842358 ACAAAGTCGGTTCATCTATTTTAGAA 57.158 30.769 0.00 0.00 38.50 2.10
1655 1884 8.718734 ACAAAGTCGGTTCATCTATTTTAGAAC 58.281 33.333 0.00 0.00 38.50 3.01
1656 1885 7.521509 AAGTCGGTTCATCTATTTTAGAACG 57.478 36.000 0.00 0.00 40.83 3.95
1657 1886 6.040878 AGTCGGTTCATCTATTTTAGAACGG 58.959 40.000 0.00 0.00 40.83 4.44
1658 1887 6.038356 GTCGGTTCATCTATTTTAGAACGGA 58.962 40.000 9.39 9.39 43.40 4.69
1659 1888 6.198591 GTCGGTTCATCTATTTTAGAACGGAG 59.801 42.308 12.56 2.19 44.97 4.63
1660 1889 5.462398 CGGTTCATCTATTTTAGAACGGAGG 59.538 44.000 0.00 0.00 41.15 4.30
1661 1890 5.758784 GGTTCATCTATTTTAGAACGGAGGG 59.241 44.000 0.00 0.00 40.83 4.30
1662 1891 6.407752 GGTTCATCTATTTTAGAACGGAGGGA 60.408 42.308 0.00 0.00 40.83 4.20
1663 1892 6.406692 TCATCTATTTTAGAACGGAGGGAG 57.593 41.667 0.00 0.00 38.50 4.30
1664 1893 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
1665 1894 7.064866 TCATCTATTTTAGAACGGAGGGAGTA 58.935 38.462 0.00 0.00 38.50 2.59
1666 1895 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
1667 1896 6.430007 TCTATTTTAGAACGGAGGGAGTACT 58.570 40.000 0.00 0.00 0.00 2.73
1668 1897 7.577303 TCTATTTTAGAACGGAGGGAGTACTA 58.423 38.462 0.00 0.00 0.00 1.82
1669 1898 5.904362 TTTTAGAACGGAGGGAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
1670 1899 2.433662 AGAACGGAGGGAGTACTACC 57.566 55.000 17.30 17.30 0.00 3.18
1672 1901 3.118531 AGAACGGAGGGAGTACTACCTA 58.881 50.000 27.44 0.00 46.12 3.08
1673 1902 3.721050 AGAACGGAGGGAGTACTACCTAT 59.279 47.826 27.44 12.70 46.12 2.57
1674 1903 3.505480 ACGGAGGGAGTACTACCTATG 57.495 52.381 27.44 22.64 46.12 2.23
1675 1904 2.782341 ACGGAGGGAGTACTACCTATGT 59.218 50.000 27.44 23.29 46.12 2.29
1676 1905 3.976654 ACGGAGGGAGTACTACCTATGTA 59.023 47.826 27.44 0.00 46.12 2.29
1677 1906 4.413520 ACGGAGGGAGTACTACCTATGTAA 59.586 45.833 27.44 0.00 46.12 2.41
1678 1907 5.103940 ACGGAGGGAGTACTACCTATGTAAA 60.104 44.000 27.44 0.00 46.12 2.01
1679 1908 5.472820 CGGAGGGAGTACTACCTATGTAAAG 59.527 48.000 27.44 9.21 46.12 1.85
1680 1909 6.608922 GGAGGGAGTACTACCTATGTAAAGA 58.391 44.000 27.44 0.00 46.12 2.52
1681 1910 7.065504 GGAGGGAGTACTACCTATGTAAAGAA 58.934 42.308 27.44 0.00 46.12 2.52
1682 1911 7.562821 GGAGGGAGTACTACCTATGTAAAGAAA 59.437 40.741 27.44 0.00 46.12 2.52
1683 1912 9.145442 GAGGGAGTACTACCTATGTAAAGAAAT 57.855 37.037 27.44 0.00 46.12 2.17
1797 2029 2.587956 GGTTAATTGACGGAAAACCGC 58.412 47.619 8.59 2.88 36.58 5.68
1848 2081 4.338710 GCACCACCGGCCAACCTA 62.339 66.667 0.00 0.00 0.00 3.08
1861 2094 0.249120 CAACCTAGCCACCGACATGA 59.751 55.000 0.00 0.00 0.00 3.07
1868 2101 0.881118 GCCACCGACATGAAACACAT 59.119 50.000 0.00 0.00 40.17 3.21
1901 2134 2.028766 CTGCACAAGCTATGACGGCG 62.029 60.000 4.80 4.80 42.74 6.46
1902 2135 2.100631 GCACAAGCTATGACGGCGT 61.101 57.895 14.65 14.65 37.91 5.68
1923 2157 2.665000 CCGACAGATGGCCACACT 59.335 61.111 8.16 8.24 0.00 3.55
1956 2190 1.135527 ACAACTCCGACTTTGACGACA 59.864 47.619 0.00 0.00 0.00 4.35
2015 2251 4.954970 CCACCGCAGCAACCACCT 62.955 66.667 0.00 0.00 0.00 4.00
2054 2290 3.374402 CTGGACTCGCTCCACCGT 61.374 66.667 0.00 0.00 44.99 4.83
2057 2293 2.045131 GGACTCGCTCCACCGTAGT 61.045 63.158 0.00 0.00 39.21 2.73
2080 2316 1.024271 GACTTCACAGCAACCAAGCA 58.976 50.000 0.00 0.00 36.85 3.91
2106 2344 1.671742 GGAAGAGCACCTCGGACAA 59.328 57.895 0.00 0.00 35.36 3.18
2120 2358 1.609580 CGGACAAGTCGGGAAAATCCA 60.610 52.381 0.00 0.00 38.64 3.41
2149 2387 4.143333 CCGATCCGCGACCCAAGT 62.143 66.667 8.23 0.00 44.57 3.16
2185 2423 5.470777 CCATCATTGTTGCCAAACAGAAATT 59.529 36.000 0.00 0.00 46.66 1.82
2274 2512 4.717313 GCCAACCACCGGTCTCCC 62.717 72.222 2.59 0.00 33.12 4.30
2376 2614 0.962855 GTTTCCCTCTGGAGCCAAGC 60.963 60.000 0.00 0.00 43.07 4.01
2379 2617 3.333219 CCTCTGGAGCCAAGCCCA 61.333 66.667 0.00 0.00 0.00 5.36
2406 2644 1.376553 GGGGAGAAGCAGCACACTC 60.377 63.158 0.00 0.00 0.00 3.51
2438 2676 3.825160 AAGAAAGAGTGCGGCGCCA 62.825 57.895 30.82 14.86 0.00 5.69
2509 2754 1.827789 GCTCAACCACCAACTGCCA 60.828 57.895 0.00 0.00 0.00 4.92
2510 2755 1.391157 GCTCAACCACCAACTGCCAA 61.391 55.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.475135 GAAGGCAGGGGCGTCTCC 62.475 72.222 0.00 0.00 42.47 3.71
29 30 4.475135 GGAAGGCAGGGGCGTCTC 62.475 72.222 5.80 0.00 42.47 3.36
31 32 4.475135 GAGGAAGGCAGGGGCGTC 62.475 72.222 0.00 0.00 42.47 5.19
39 40 2.281484 GTTGTGGCGAGGAAGGCA 60.281 61.111 0.00 0.00 44.68 4.75
40 41 2.032681 AGTTGTGGCGAGGAAGGC 59.967 61.111 0.00 0.00 37.19 4.35
41 42 0.951040 GACAGTTGTGGCGAGGAAGG 60.951 60.000 0.00 0.00 0.00 3.46
42 43 0.034059 AGACAGTTGTGGCGAGGAAG 59.966 55.000 0.00 0.00 36.45 3.46
43 44 0.033504 GAGACAGTTGTGGCGAGGAA 59.966 55.000 0.00 0.00 36.45 3.36
44 45 1.666011 GAGACAGTTGTGGCGAGGA 59.334 57.895 0.00 0.00 36.45 3.71
45 46 1.374758 GGAGACAGTTGTGGCGAGG 60.375 63.158 0.00 0.00 36.45 4.63
46 47 1.374758 GGGAGACAGTTGTGGCGAG 60.375 63.158 0.00 0.00 36.45 5.03
47 48 1.816863 GAGGGAGACAGTTGTGGCGA 61.817 60.000 0.00 0.00 36.45 5.54
48 49 1.374758 GAGGGAGACAGTTGTGGCG 60.375 63.158 0.00 0.00 36.45 5.69
49 50 1.374758 CGAGGGAGACAGTTGTGGC 60.375 63.158 0.00 0.00 0.00 5.01
50 51 1.374758 GCGAGGGAGACAGTTGTGG 60.375 63.158 0.00 0.00 0.00 4.17
51 52 1.374758 GGCGAGGGAGACAGTTGTG 60.375 63.158 0.00 0.00 0.00 3.33
52 53 2.932234 CGGCGAGGGAGACAGTTGT 61.932 63.158 0.00 0.00 0.00 3.32
53 54 2.125912 CGGCGAGGGAGACAGTTG 60.126 66.667 0.00 0.00 0.00 3.16
54 55 2.600769 ACGGCGAGGGAGACAGTT 60.601 61.111 16.62 0.00 0.00 3.16
55 56 3.063084 GACGGCGAGGGAGACAGT 61.063 66.667 16.62 0.00 0.00 3.55
56 57 3.062466 TGACGGCGAGGGAGACAG 61.062 66.667 16.62 0.00 0.00 3.51
57 58 3.371063 GTGACGGCGAGGGAGACA 61.371 66.667 16.62 0.00 0.00 3.41
58 59 4.131088 GGTGACGGCGAGGGAGAC 62.131 72.222 16.62 0.00 0.00 3.36
128 129 4.838152 CGATGGCTCCGGTGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
129 130 4.082523 ACGATGGCTCCGGTGGTG 62.083 66.667 0.00 0.00 0.00 4.17
130 131 3.771160 GACGATGGCTCCGGTGGT 61.771 66.667 0.00 0.00 0.00 4.16
131 132 3.461773 AGACGATGGCTCCGGTGG 61.462 66.667 0.00 0.00 0.00 4.61
132 133 1.663379 TACAGACGATGGCTCCGGTG 61.663 60.000 0.00 0.00 0.00 4.94
133 134 0.968901 TTACAGACGATGGCTCCGGT 60.969 55.000 0.00 0.00 0.00 5.28
134 135 0.249073 CTTACAGACGATGGCTCCGG 60.249 60.000 0.00 0.00 0.00 5.14
135 136 0.872021 GCTTACAGACGATGGCTCCG 60.872 60.000 0.00 0.00 0.00 4.63
136 137 0.175760 TGCTTACAGACGATGGCTCC 59.824 55.000 0.00 0.00 0.00 4.70
137 138 1.281899 GTGCTTACAGACGATGGCTC 58.718 55.000 0.00 0.00 0.00 4.70
138 139 0.108138 GGTGCTTACAGACGATGGCT 60.108 55.000 0.00 0.00 0.00 4.75
139 140 1.090052 GGGTGCTTACAGACGATGGC 61.090 60.000 0.00 0.00 0.00 4.40
140 141 0.462047 GGGGTGCTTACAGACGATGG 60.462 60.000 0.00 0.00 0.00 3.51
141 142 0.537188 AGGGGTGCTTACAGACGATG 59.463 55.000 0.00 0.00 0.00 3.84
142 143 0.824759 GAGGGGTGCTTACAGACGAT 59.175 55.000 0.00 0.00 0.00 3.73
143 144 1.255667 GGAGGGGTGCTTACAGACGA 61.256 60.000 0.00 0.00 0.00 4.20
144 145 1.218316 GGAGGGGTGCTTACAGACG 59.782 63.158 0.00 0.00 0.00 4.18
145 146 0.537653 GAGGAGGGGTGCTTACAGAC 59.462 60.000 0.00 0.00 0.00 3.51
146 147 0.413832 AGAGGAGGGGTGCTTACAGA 59.586 55.000 0.00 0.00 0.00 3.41
147 148 0.827368 GAGAGGAGGGGTGCTTACAG 59.173 60.000 0.00 0.00 0.00 2.74
148 149 0.413832 AGAGAGGAGGGGTGCTTACA 59.586 55.000 0.00 0.00 0.00 2.41
149 150 1.116308 GAGAGAGGAGGGGTGCTTAC 58.884 60.000 0.00 0.00 0.00 2.34
150 151 1.011595 AGAGAGAGGAGGGGTGCTTA 58.988 55.000 0.00 0.00 0.00 3.09
151 152 0.325203 GAGAGAGAGGAGGGGTGCTT 60.325 60.000 0.00 0.00 0.00 3.91
152 153 1.221213 AGAGAGAGAGGAGGGGTGCT 61.221 60.000 0.00 0.00 0.00 4.40
153 154 0.755327 GAGAGAGAGAGGAGGGGTGC 60.755 65.000 0.00 0.00 0.00 5.01
154 155 0.926293 AGAGAGAGAGAGGAGGGGTG 59.074 60.000 0.00 0.00 0.00 4.61
155 156 1.222567 GAGAGAGAGAGAGGAGGGGT 58.777 60.000 0.00 0.00 0.00 4.95
156 157 1.421646 GAGAGAGAGAGAGAGGAGGGG 59.578 61.905 0.00 0.00 0.00 4.79
157 158 2.126882 TGAGAGAGAGAGAGAGGAGGG 58.873 57.143 0.00 0.00 0.00 4.30
158 159 3.748083 CATGAGAGAGAGAGAGAGGAGG 58.252 54.545 0.00 0.00 0.00 4.30
159 160 3.144506 GCATGAGAGAGAGAGAGAGGAG 58.855 54.545 0.00 0.00 0.00 3.69
160 161 2.509131 TGCATGAGAGAGAGAGAGAGGA 59.491 50.000 0.00 0.00 0.00 3.71
161 162 2.934887 TGCATGAGAGAGAGAGAGAGG 58.065 52.381 0.00 0.00 0.00 3.69
162 163 4.155462 GCTATGCATGAGAGAGAGAGAGAG 59.845 50.000 10.16 0.00 0.00 3.20
163 164 4.074259 GCTATGCATGAGAGAGAGAGAGA 58.926 47.826 10.16 0.00 0.00 3.10
164 165 3.822167 TGCTATGCATGAGAGAGAGAGAG 59.178 47.826 10.16 0.00 31.71 3.20
165 166 3.569277 GTGCTATGCATGAGAGAGAGAGA 59.431 47.826 10.16 0.00 41.91 3.10
166 167 3.318557 TGTGCTATGCATGAGAGAGAGAG 59.681 47.826 10.16 0.00 41.91 3.20
167 168 3.294214 TGTGCTATGCATGAGAGAGAGA 58.706 45.455 10.16 0.00 41.91 3.10
168 169 3.729862 TGTGCTATGCATGAGAGAGAG 57.270 47.619 10.16 0.00 41.91 3.20
169 170 4.186926 GTTTGTGCTATGCATGAGAGAGA 58.813 43.478 10.16 0.00 41.91 3.10
170 171 3.937079 TGTTTGTGCTATGCATGAGAGAG 59.063 43.478 10.16 0.00 41.91 3.20
171 172 3.941573 TGTTTGTGCTATGCATGAGAGA 58.058 40.909 10.16 0.00 41.91 3.10
172 173 4.895224 ATGTTTGTGCTATGCATGAGAG 57.105 40.909 10.16 0.00 41.91 3.20
173 174 4.142337 CCAATGTTTGTGCTATGCATGAGA 60.142 41.667 10.16 0.00 41.91 3.27
174 175 4.109766 CCAATGTTTGTGCTATGCATGAG 58.890 43.478 10.16 4.20 41.91 2.90
175 176 3.762823 TCCAATGTTTGTGCTATGCATGA 59.237 39.130 10.16 0.00 41.91 3.07
176 177 3.861113 GTCCAATGTTTGTGCTATGCATG 59.139 43.478 10.16 0.26 41.91 4.06
177 178 3.510753 TGTCCAATGTTTGTGCTATGCAT 59.489 39.130 3.79 3.79 41.91 3.96
178 179 2.889678 TGTCCAATGTTTGTGCTATGCA 59.110 40.909 0.00 0.00 35.60 3.96
179 180 3.574284 TGTCCAATGTTTGTGCTATGC 57.426 42.857 0.00 0.00 0.00 3.14
180 181 6.441093 AGTATGTCCAATGTTTGTGCTATG 57.559 37.500 0.00 0.00 0.00 2.23
181 182 7.829211 AGTTAGTATGTCCAATGTTTGTGCTAT 59.171 33.333 0.00 0.00 0.00 2.97
182 183 7.165485 AGTTAGTATGTCCAATGTTTGTGCTA 58.835 34.615 0.00 0.00 0.00 3.49
183 184 6.003950 AGTTAGTATGTCCAATGTTTGTGCT 58.996 36.000 0.00 0.00 0.00 4.40
184 185 6.254281 AGTTAGTATGTCCAATGTTTGTGC 57.746 37.500 0.00 0.00 0.00 4.57
185 186 7.334421 AGCTAGTTAGTATGTCCAATGTTTGTG 59.666 37.037 0.00 0.00 0.00 3.33
186 187 7.394816 AGCTAGTTAGTATGTCCAATGTTTGT 58.605 34.615 0.00 0.00 0.00 2.83
187 188 7.849804 AGCTAGTTAGTATGTCCAATGTTTG 57.150 36.000 0.00 0.00 0.00 2.93
188 189 8.204836 CCTAGCTAGTTAGTATGTCCAATGTTT 58.795 37.037 19.31 0.00 0.00 2.83
189 190 7.344871 ACCTAGCTAGTTAGTATGTCCAATGTT 59.655 37.037 19.31 0.00 0.00 2.71
190 191 6.839657 ACCTAGCTAGTTAGTATGTCCAATGT 59.160 38.462 19.31 1.58 0.00 2.71
191 192 7.291411 ACCTAGCTAGTTAGTATGTCCAATG 57.709 40.000 19.31 0.97 0.00 2.82
192 193 7.916077 AACCTAGCTAGTTAGTATGTCCAAT 57.084 36.000 19.31 0.00 0.00 3.16
193 194 8.689972 GTTAACCTAGCTAGTTAGTATGTCCAA 58.310 37.037 19.31 4.14 31.66 3.53
194 195 8.057623 AGTTAACCTAGCTAGTTAGTATGTCCA 58.942 37.037 19.31 0.00 31.66 4.02
195 196 8.462589 AGTTAACCTAGCTAGTTAGTATGTCC 57.537 38.462 19.31 1.46 31.66 4.02
227 228 9.969001 TGCACTAACCTAGAAAATTAACCTAAT 57.031 29.630 0.00 0.00 0.00 1.73
228 229 9.796180 TTGCACTAACCTAGAAAATTAACCTAA 57.204 29.630 0.00 0.00 0.00 2.69
229 230 9.796180 TTTGCACTAACCTAGAAAATTAACCTA 57.204 29.630 0.00 0.00 0.00 3.08
230 231 8.700439 TTTGCACTAACCTAGAAAATTAACCT 57.300 30.769 0.00 0.00 0.00 3.50
231 232 9.752961 TTTTTGCACTAACCTAGAAAATTAACC 57.247 29.630 0.00 0.00 0.00 2.85
237 238 9.127277 ACTACATTTTTGCACTAACCTAGAAAA 57.873 29.630 0.00 0.00 0.00 2.29
238 239 8.685838 ACTACATTTTTGCACTAACCTAGAAA 57.314 30.769 0.00 0.00 0.00 2.52
239 240 8.685838 AACTACATTTTTGCACTAACCTAGAA 57.314 30.769 0.00 0.00 0.00 2.10
240 241 9.431887 CTAACTACATTTTTGCACTAACCTAGA 57.568 33.333 0.00 0.00 0.00 2.43
241 242 8.665685 CCTAACTACATTTTTGCACTAACCTAG 58.334 37.037 0.00 0.00 0.00 3.02
242 243 7.608761 CCCTAACTACATTTTTGCACTAACCTA 59.391 37.037 0.00 0.00 0.00 3.08
243 244 6.433093 CCCTAACTACATTTTTGCACTAACCT 59.567 38.462 0.00 0.00 0.00 3.50
244 245 6.617879 CCCTAACTACATTTTTGCACTAACC 58.382 40.000 0.00 0.00 0.00 2.85
245 246 6.072119 AGCCCTAACTACATTTTTGCACTAAC 60.072 38.462 0.00 0.00 0.00 2.34
246 247 6.007703 AGCCCTAACTACATTTTTGCACTAA 58.992 36.000 0.00 0.00 0.00 2.24
247 248 5.566469 AGCCCTAACTACATTTTTGCACTA 58.434 37.500 0.00 0.00 0.00 2.74
248 249 4.407365 AGCCCTAACTACATTTTTGCACT 58.593 39.130 0.00 0.00 0.00 4.40
249 250 4.783764 AGCCCTAACTACATTTTTGCAC 57.216 40.909 0.00 0.00 0.00 4.57
250 251 5.303078 TCAAAGCCCTAACTACATTTTTGCA 59.697 36.000 0.00 0.00 0.00 4.08
251 252 5.633601 GTCAAAGCCCTAACTACATTTTTGC 59.366 40.000 0.00 0.00 0.00 3.68
252 253 6.744112 TGTCAAAGCCCTAACTACATTTTTG 58.256 36.000 0.00 0.00 0.00 2.44
253 254 6.775629 TCTGTCAAAGCCCTAACTACATTTTT 59.224 34.615 0.00 0.00 0.00 1.94
254 255 6.303839 TCTGTCAAAGCCCTAACTACATTTT 58.696 36.000 0.00 0.00 0.00 1.82
255 256 5.876357 TCTGTCAAAGCCCTAACTACATTT 58.124 37.500 0.00 0.00 0.00 2.32
256 257 5.248477 TCTCTGTCAAAGCCCTAACTACATT 59.752 40.000 0.00 0.00 0.00 2.71
257 258 4.777896 TCTCTGTCAAAGCCCTAACTACAT 59.222 41.667 0.00 0.00 0.00 2.29
258 259 4.157246 TCTCTGTCAAAGCCCTAACTACA 58.843 43.478 0.00 0.00 0.00 2.74
259 260 4.803098 TCTCTGTCAAAGCCCTAACTAC 57.197 45.455 0.00 0.00 0.00 2.73
260 261 4.838986 AGTTCTCTGTCAAAGCCCTAACTA 59.161 41.667 0.00 0.00 0.00 2.24
261 262 3.648545 AGTTCTCTGTCAAAGCCCTAACT 59.351 43.478 0.00 0.00 0.00 2.24
262 263 4.009370 AGTTCTCTGTCAAAGCCCTAAC 57.991 45.455 0.00 0.00 0.00 2.34
263 264 4.838986 ACTAGTTCTCTGTCAAAGCCCTAA 59.161 41.667 0.00 0.00 0.00 2.69
264 265 4.417437 ACTAGTTCTCTGTCAAAGCCCTA 58.583 43.478 0.00 0.00 0.00 3.53
265 266 3.243724 ACTAGTTCTCTGTCAAAGCCCT 58.756 45.455 0.00 0.00 0.00 5.19
266 267 3.686916 ACTAGTTCTCTGTCAAAGCCC 57.313 47.619 0.00 0.00 0.00 5.19
267 268 5.172205 CCTAACTAGTTCTCTGTCAAAGCC 58.828 45.833 12.39 0.00 0.00 4.35
268 269 5.785243 ACCTAACTAGTTCTCTGTCAAAGC 58.215 41.667 12.39 0.00 0.00 3.51
269 270 9.194271 GTTAACCTAACTAGTTCTCTGTCAAAG 57.806 37.037 12.39 0.21 35.81 2.77
270 271 8.921205 AGTTAACCTAACTAGTTCTCTGTCAAA 58.079 33.333 12.39 1.99 46.53 2.69
271 272 8.474710 AGTTAACCTAACTAGTTCTCTGTCAA 57.525 34.615 12.39 0.00 46.53 3.18
320 321 7.014988 TCTGCCAAAGCCCTAAATAATTTTT 57.985 32.000 0.00 0.00 38.69 1.94
321 322 6.440328 TCTCTGCCAAAGCCCTAAATAATTTT 59.560 34.615 0.00 0.00 38.69 1.82
322 323 5.957774 TCTCTGCCAAAGCCCTAAATAATTT 59.042 36.000 0.00 0.00 38.69 1.82
323 324 5.518865 TCTCTGCCAAAGCCCTAAATAATT 58.481 37.500 0.00 0.00 38.69 1.40
324 325 5.129368 TCTCTGCCAAAGCCCTAAATAAT 57.871 39.130 0.00 0.00 38.69 1.28
325 326 4.584638 TCTCTGCCAAAGCCCTAAATAA 57.415 40.909 0.00 0.00 38.69 1.40
326 327 4.018415 AGTTCTCTGCCAAAGCCCTAAATA 60.018 41.667 0.00 0.00 38.69 1.40
327 328 3.092301 GTTCTCTGCCAAAGCCCTAAAT 58.908 45.455 0.00 0.00 38.69 1.40
328 329 2.108250 AGTTCTCTGCCAAAGCCCTAAA 59.892 45.455 0.00 0.00 38.69 1.85
329 330 1.705186 AGTTCTCTGCCAAAGCCCTAA 59.295 47.619 0.00 0.00 38.69 2.69
330 331 1.362224 AGTTCTCTGCCAAAGCCCTA 58.638 50.000 0.00 0.00 38.69 3.53
331 332 1.280421 CTAGTTCTCTGCCAAAGCCCT 59.720 52.381 0.00 0.00 38.69 5.19
332 333 1.743996 CTAGTTCTCTGCCAAAGCCC 58.256 55.000 0.00 0.00 38.69 5.19
333 334 1.090728 GCTAGTTCTCTGCCAAAGCC 58.909 55.000 0.00 0.00 38.69 4.35
334 335 2.106477 AGCTAGTTCTCTGCCAAAGC 57.894 50.000 0.00 0.00 40.48 3.51
335 336 3.196685 ACCTAGCTAGTTCTCTGCCAAAG 59.803 47.826 19.31 2.01 0.00 2.77
336 337 3.173965 ACCTAGCTAGTTCTCTGCCAAA 58.826 45.455 19.31 0.00 0.00 3.28
337 338 2.821437 ACCTAGCTAGTTCTCTGCCAA 58.179 47.619 19.31 0.00 0.00 4.52
338 339 2.534042 ACCTAGCTAGTTCTCTGCCA 57.466 50.000 19.31 0.00 0.00 4.92
339 340 3.897141 AAACCTAGCTAGTTCTCTGCC 57.103 47.619 19.31 0.00 0.00 4.85
340 341 5.585820 AGTAAACCTAGCTAGTTCTCTGC 57.414 43.478 19.31 3.35 0.00 4.26
341 342 7.868906 ACTAGTAAACCTAGCTAGTTCTCTG 57.131 40.000 19.31 5.52 46.10 3.35
379 380 8.255905 GCTTGTTGACCTAGTTTACCTAGATAA 58.744 37.037 0.00 0.00 45.21 1.75
380 381 7.618512 AGCTTGTTGACCTAGTTTACCTAGATA 59.381 37.037 0.00 0.00 45.21 1.98
381 382 6.440965 AGCTTGTTGACCTAGTTTACCTAGAT 59.559 38.462 0.00 0.00 45.21 1.98
382 383 5.778750 AGCTTGTTGACCTAGTTTACCTAGA 59.221 40.000 0.00 0.00 45.21 2.43
383 384 6.038997 AGCTTGTTGACCTAGTTTACCTAG 57.961 41.667 0.00 0.00 42.51 3.02
384 385 6.154021 CCTAGCTTGTTGACCTAGTTTACCTA 59.846 42.308 0.00 0.00 0.00 3.08
385 386 4.976540 AGCTTGTTGACCTAGTTTACCT 57.023 40.909 0.00 0.00 0.00 3.08
386 387 5.176592 CCTAGCTTGTTGACCTAGTTTACC 58.823 45.833 0.00 0.00 0.00 2.85
387 388 5.791666 ACCTAGCTTGTTGACCTAGTTTAC 58.208 41.667 0.00 0.00 0.00 2.01
388 389 6.429521 AACCTAGCTTGTTGACCTAGTTTA 57.570 37.500 0.00 0.00 0.00 2.01
389 390 4.976540 ACCTAGCTTGTTGACCTAGTTT 57.023 40.909 0.00 0.00 0.00 2.66
390 391 4.976540 AACCTAGCTTGTTGACCTAGTT 57.023 40.909 0.00 0.00 0.00 2.24
391 392 5.543020 AGTTAACCTAGCTTGTTGACCTAGT 59.457 40.000 15.56 1.08 33.94 2.57
392 393 6.038997 AGTTAACCTAGCTTGTTGACCTAG 57.961 41.667 15.56 0.00 33.94 3.02
393 394 7.234166 AGTTAGTTAACCTAGCTTGTTGACCTA 59.766 37.037 15.56 8.71 33.85 3.08
394 395 4.976540 AGTTAACCTAGCTTGTTGACCT 57.023 40.909 15.56 5.87 33.94 3.85
395 396 6.228995 AGTTAGTTAACCTAGCTTGTTGACC 58.771 40.000 15.56 5.71 33.85 4.02
396 397 7.063191 GCTAGTTAGTTAACCTAGCTTGTTGAC 59.937 40.741 23.97 12.84 38.14 3.18
397 398 7.039223 AGCTAGTTAGTTAACCTAGCTTGTTGA 60.039 37.037 26.39 1.31 43.00 3.18
398 399 7.097834 AGCTAGTTAGTTAACCTAGCTTGTTG 58.902 38.462 26.39 10.11 43.00 3.33
399 400 7.242322 AGCTAGTTAGTTAACCTAGCTTGTT 57.758 36.000 26.39 13.59 43.00 2.83
400 401 6.854091 AGCTAGTTAGTTAACCTAGCTTGT 57.146 37.500 26.39 13.84 43.00 3.16
401 402 7.068470 ACCTAGCTAGTTAGTTAACCTAGCTTG 59.932 40.741 31.92 29.39 43.00 4.01
402 403 7.124721 ACCTAGCTAGTTAGTTAACCTAGCTT 58.875 38.462 31.92 20.46 43.00 3.74
403 404 6.671605 ACCTAGCTAGTTAGTTAACCTAGCT 58.328 40.000 30.65 30.65 44.91 3.32
404 405 6.957920 ACCTAGCTAGTTAGTTAACCTAGC 57.042 41.667 23.89 23.89 39.90 3.42
412 413 9.445878 GAACCAAATTAACCTAGCTAGTTAGTT 57.554 33.333 19.31 17.04 32.83 2.24
413 414 7.763071 CGAACCAAATTAACCTAGCTAGTTAGT 59.237 37.037 19.31 7.60 31.66 2.24
414 415 7.763071 ACGAACCAAATTAACCTAGCTAGTTAG 59.237 37.037 19.31 6.64 31.66 2.34
415 416 7.614494 ACGAACCAAATTAACCTAGCTAGTTA 58.386 34.615 19.31 13.95 0.00 2.24
416 417 6.470278 ACGAACCAAATTAACCTAGCTAGTT 58.530 36.000 19.31 14.85 0.00 2.24
417 418 6.046290 ACGAACCAAATTAACCTAGCTAGT 57.954 37.500 19.31 4.58 0.00 2.57
418 419 6.980051 AACGAACCAAATTAACCTAGCTAG 57.020 37.500 14.20 14.20 0.00 3.42
419 420 7.043565 CCTAACGAACCAAATTAACCTAGCTA 58.956 38.462 0.00 0.00 0.00 3.32
420 421 5.878669 CCTAACGAACCAAATTAACCTAGCT 59.121 40.000 0.00 0.00 0.00 3.32
421 422 5.645067 ACCTAACGAACCAAATTAACCTAGC 59.355 40.000 0.00 0.00 0.00 3.42
422 423 7.677454 AACCTAACGAACCAAATTAACCTAG 57.323 36.000 0.00 0.00 0.00 3.02
423 424 8.998377 GTTAACCTAACGAACCAAATTAACCTA 58.002 33.333 0.00 0.00 0.00 3.08
424 425 7.501892 TGTTAACCTAACGAACCAAATTAACCT 59.498 33.333 2.48 0.00 41.50 3.50
425 426 7.647228 TGTTAACCTAACGAACCAAATTAACC 58.353 34.615 2.48 0.00 41.50 2.85
426 427 9.172820 CTTGTTAACCTAACGAACCAAATTAAC 57.827 33.333 2.48 0.00 41.50 2.01
427 428 7.861872 GCTTGTTAACCTAACGAACCAAATTAA 59.138 33.333 2.48 0.00 41.50 1.40
428 429 7.229106 AGCTTGTTAACCTAACGAACCAAATTA 59.771 33.333 2.48 0.00 41.50 1.40
429 430 6.040054 AGCTTGTTAACCTAACGAACCAAATT 59.960 34.615 2.48 0.00 41.50 1.82
430 431 5.533528 AGCTTGTTAACCTAACGAACCAAAT 59.466 36.000 2.48 0.00 41.50 2.32
431 432 4.883006 AGCTTGTTAACCTAACGAACCAAA 59.117 37.500 2.48 0.00 41.50 3.28
432 433 4.453751 AGCTTGTTAACCTAACGAACCAA 58.546 39.130 2.48 0.00 41.50 3.67
433 434 4.075963 AGCTTGTTAACCTAACGAACCA 57.924 40.909 2.48 0.00 41.50 3.67
434 435 4.628766 CCTAGCTTGTTAACCTAACGAACC 59.371 45.833 2.48 0.00 41.50 3.62
435 436 5.233225 ACCTAGCTTGTTAACCTAACGAAC 58.767 41.667 2.48 0.00 41.50 3.95
436 437 5.473066 ACCTAGCTTGTTAACCTAACGAA 57.527 39.130 2.48 0.00 41.50 3.85
437 438 5.473066 AACCTAGCTTGTTAACCTAACGA 57.527 39.130 2.48 0.00 41.50 3.85
438 439 7.053710 GTTAACCTAGCTTGTTAACCTAACG 57.946 40.000 26.07 1.44 46.25 3.18
445 446 7.092716 CGAACCTAGTTAACCTAGCTTGTTAA 58.907 38.462 14.04 14.04 41.68 2.01
446 447 6.624423 CGAACCTAGTTAACCTAGCTTGTTA 58.376 40.000 0.88 0.00 41.68 2.41
447 448 5.476614 CGAACCTAGTTAACCTAGCTTGTT 58.523 41.667 0.88 0.00 41.68 2.83
448 449 4.620097 GCGAACCTAGTTAACCTAGCTTGT 60.620 45.833 0.88 0.00 41.68 3.16
449 450 3.864003 GCGAACCTAGTTAACCTAGCTTG 59.136 47.826 0.88 0.00 41.68 4.01
450 451 3.768215 AGCGAACCTAGTTAACCTAGCTT 59.232 43.478 0.88 0.00 41.68 3.74
451 452 3.363627 AGCGAACCTAGTTAACCTAGCT 58.636 45.455 0.88 0.00 41.68 3.32
452 453 3.797451 AGCGAACCTAGTTAACCTAGC 57.203 47.619 0.88 0.00 41.68 3.42
453 454 4.886489 ACCTAGCGAACCTAGTTAACCTAG 59.114 45.833 0.88 3.51 41.68 3.02
454 455 4.860022 ACCTAGCGAACCTAGTTAACCTA 58.140 43.478 0.88 0.00 41.68 3.08
455 456 3.706183 ACCTAGCGAACCTAGTTAACCT 58.294 45.455 0.88 0.00 41.68 3.50
456 457 4.462508 AACCTAGCGAACCTAGTTAACC 57.537 45.455 0.88 0.00 41.68 2.85
457 458 6.442513 TCTAACCTAGCGAACCTAGTTAAC 57.557 41.667 0.00 0.00 41.68 2.01
458 459 5.591877 CCTCTAACCTAGCGAACCTAGTTAA 59.408 44.000 0.00 0.00 41.68 2.01
459 460 5.104360 TCCTCTAACCTAGCGAACCTAGTTA 60.104 44.000 0.00 0.00 41.68 2.24
460 461 3.952967 CCTCTAACCTAGCGAACCTAGTT 59.047 47.826 0.00 0.00 41.68 2.24
461 462 3.201708 TCCTCTAACCTAGCGAACCTAGT 59.798 47.826 0.00 0.00 41.68 2.57
462 463 3.818180 TCCTCTAACCTAGCGAACCTAG 58.182 50.000 0.00 0.00 42.68 3.02
463 464 3.939740 TCCTCTAACCTAGCGAACCTA 57.060 47.619 0.00 0.00 0.00 3.08
464 465 2.822707 TCCTCTAACCTAGCGAACCT 57.177 50.000 0.00 0.00 0.00 3.50
465 466 3.881937 TTTCCTCTAACCTAGCGAACC 57.118 47.619 0.00 0.00 0.00 3.62
466 467 6.738832 AATTTTTCCTCTAACCTAGCGAAC 57.261 37.500 0.00 0.00 0.00 3.95
467 468 9.457436 AATAAATTTTTCCTCTAACCTAGCGAA 57.543 29.630 0.00 0.00 0.00 4.70
468 469 9.457436 AAATAAATTTTTCCTCTAACCTAGCGA 57.543 29.630 0.00 0.00 0.00 4.93
474 475 9.350357 GGTCGAAAATAAATTTTTCCTCTAACC 57.650 33.333 0.00 0.00 39.86 2.85
475 476 9.902196 TGGTCGAAAATAAATTTTTCCTCTAAC 57.098 29.630 0.00 0.00 39.86 2.34
476 477 9.902196 GTGGTCGAAAATAAATTTTTCCTCTAA 57.098 29.630 0.00 0.00 39.86 2.10
477 478 9.292195 AGTGGTCGAAAATAAATTTTTCCTCTA 57.708 29.630 0.00 0.00 39.86 2.43
478 479 8.178313 AGTGGTCGAAAATAAATTTTTCCTCT 57.822 30.769 0.00 8.49 39.86 3.69
486 487 9.855021 CAGGAAAATAGTGGTCGAAAATAAATT 57.145 29.630 0.00 0.00 0.00 1.82
487 488 8.466798 CCAGGAAAATAGTGGTCGAAAATAAAT 58.533 33.333 0.00 0.00 0.00 1.40
488 489 7.449086 ACCAGGAAAATAGTGGTCGAAAATAAA 59.551 33.333 0.00 0.00 40.78 1.40
489 490 6.943718 ACCAGGAAAATAGTGGTCGAAAATAA 59.056 34.615 0.00 0.00 40.78 1.40
490 491 6.478129 ACCAGGAAAATAGTGGTCGAAAATA 58.522 36.000 0.00 0.00 40.78 1.40
491 492 5.321927 ACCAGGAAAATAGTGGTCGAAAAT 58.678 37.500 0.00 0.00 40.78 1.82
492 493 4.721132 ACCAGGAAAATAGTGGTCGAAAA 58.279 39.130 0.00 0.00 40.78 2.29
493 494 4.360951 ACCAGGAAAATAGTGGTCGAAA 57.639 40.909 0.00 0.00 40.78 3.46
494 495 4.360951 AACCAGGAAAATAGTGGTCGAA 57.639 40.909 0.00 0.00 44.07 3.71
495 496 4.069304 CAAACCAGGAAAATAGTGGTCGA 58.931 43.478 0.00 0.00 44.07 4.20
496 497 4.069304 TCAAACCAGGAAAATAGTGGTCG 58.931 43.478 0.00 0.00 44.07 4.79
497 498 5.181433 GTCTCAAACCAGGAAAATAGTGGTC 59.819 44.000 0.00 0.00 44.07 4.02
498 499 5.070685 GTCTCAAACCAGGAAAATAGTGGT 58.929 41.667 0.00 0.00 46.93 4.16
499 500 4.154195 CGTCTCAAACCAGGAAAATAGTGG 59.846 45.833 0.00 0.00 37.38 4.00
500 501 4.994852 TCGTCTCAAACCAGGAAAATAGTG 59.005 41.667 0.00 0.00 0.00 2.74
501 502 5.223449 TCGTCTCAAACCAGGAAAATAGT 57.777 39.130 0.00 0.00 0.00 2.12
502 503 5.643777 ACATCGTCTCAAACCAGGAAAATAG 59.356 40.000 0.00 0.00 0.00 1.73
503 504 5.556915 ACATCGTCTCAAACCAGGAAAATA 58.443 37.500 0.00 0.00 0.00 1.40
504 505 4.398319 ACATCGTCTCAAACCAGGAAAAT 58.602 39.130 0.00 0.00 0.00 1.82
621 624 7.510549 TTCCAGTTCCAGAATTGTCTAAAAG 57.489 36.000 2.73 0.00 30.85 2.27
744 759 9.971922 CCACTTGATCAACTTTCTTTTAGATTT 57.028 29.630 3.38 0.00 0.00 2.17
784 800 0.238289 CACGAATTGACAGCCCACAC 59.762 55.000 0.00 0.00 0.00 3.82
866 917 0.972983 CGGGGTGGACATCTCTCAGT 60.973 60.000 0.00 0.00 0.00 3.41
875 926 3.172106 TTGAAGGCGGGGTGGACA 61.172 61.111 0.00 0.00 0.00 4.02
888 939 0.603707 CGAGGAGTTGCAGCCTTGAA 60.604 55.000 12.05 0.00 37.81 2.69
889 940 1.004560 CGAGGAGTTGCAGCCTTGA 60.005 57.895 12.05 0.00 37.81 3.02
890 941 2.684843 GCGAGGAGTTGCAGCCTTG 61.685 63.158 12.78 12.78 38.49 3.61
891 942 2.359230 GCGAGGAGTTGCAGCCTT 60.359 61.111 6.34 0.00 33.84 4.35
892 943 4.400961 GGCGAGGAGTTGCAGCCT 62.401 66.667 3.76 4.24 44.06 4.58
1098 1149 1.617018 CCTCGATGAGGTTGGAGCCA 61.617 60.000 4.65 0.00 44.25 4.75
1142 1197 4.104738 TGAGAACCAATTTTCAGAGAGGGT 59.895 41.667 0.00 0.00 0.00 4.34
1385 1612 0.243636 CAACCACGAAATTCCCTGCC 59.756 55.000 0.00 0.00 0.00 4.85
1573 1802 4.469945 AGTCATCTATTTTGGAACGGAGGA 59.530 41.667 0.00 0.00 0.00 3.71
1577 1806 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1578 1807 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1579 1808 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1580 1809 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1581 1810 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1582 1811 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1613 1842 9.762933 ACCGACTTTGTATTAACTTTGTACTAA 57.237 29.630 0.00 0.00 0.00 2.24
1614 1843 9.762933 AACCGACTTTGTATTAACTTTGTACTA 57.237 29.630 0.00 0.00 0.00 1.82
1615 1844 8.667076 AACCGACTTTGTATTAACTTTGTACT 57.333 30.769 0.00 0.00 0.00 2.73
1616 1845 8.550376 TGAACCGACTTTGTATTAACTTTGTAC 58.450 33.333 0.00 0.00 0.00 2.90
1617 1846 8.659925 TGAACCGACTTTGTATTAACTTTGTA 57.340 30.769 0.00 0.00 0.00 2.41
1618 1847 7.556733 TGAACCGACTTTGTATTAACTTTGT 57.443 32.000 0.00 0.00 0.00 2.83
1619 1848 8.504005 AGATGAACCGACTTTGTATTAACTTTG 58.496 33.333 0.00 0.00 0.00 2.77
1620 1849 8.617290 AGATGAACCGACTTTGTATTAACTTT 57.383 30.769 0.00 0.00 0.00 2.66
1621 1850 9.886132 ATAGATGAACCGACTTTGTATTAACTT 57.114 29.630 0.00 0.00 0.00 2.66
1622 1851 9.886132 AATAGATGAACCGACTTTGTATTAACT 57.114 29.630 0.00 0.00 0.00 2.24
1628 1857 9.932207 TTCTAAAATAGATGAACCGACTTTGTA 57.068 29.630 0.00 0.00 34.22 2.41
1629 1858 8.718734 GTTCTAAAATAGATGAACCGACTTTGT 58.281 33.333 0.00 0.00 34.22 2.83
1630 1859 7.898309 CGTTCTAAAATAGATGAACCGACTTTG 59.102 37.037 0.00 0.00 36.43 2.77
1631 1860 7.064253 CCGTTCTAAAATAGATGAACCGACTTT 59.936 37.037 0.00 0.00 36.43 2.66
1632 1861 6.534079 CCGTTCTAAAATAGATGAACCGACTT 59.466 38.462 0.00 0.00 36.43 3.01
1633 1862 6.040878 CCGTTCTAAAATAGATGAACCGACT 58.959 40.000 0.00 0.00 36.43 4.18
1634 1863 6.038356 TCCGTTCTAAAATAGATGAACCGAC 58.962 40.000 0.00 0.00 36.43 4.79
1635 1864 6.211587 TCCGTTCTAAAATAGATGAACCGA 57.788 37.500 0.00 0.00 36.43 4.69
1636 1865 5.462398 CCTCCGTTCTAAAATAGATGAACCG 59.538 44.000 0.00 0.00 36.43 4.44
1637 1866 5.758784 CCCTCCGTTCTAAAATAGATGAACC 59.241 44.000 0.00 0.00 36.43 3.62
1638 1867 6.579865 TCCCTCCGTTCTAAAATAGATGAAC 58.420 40.000 0.00 0.00 34.22 3.18
1639 1868 6.383147 ACTCCCTCCGTTCTAAAATAGATGAA 59.617 38.462 0.00 0.00 34.22 2.57
1640 1869 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
1641 1870 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
1642 1871 7.068061 AGTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
1643 1872 6.430007 AGTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
1644 1873 6.712179 AGTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
1645 1874 6.547510 GGTAGTACTCCCTCCGTTCTAAAATA 59.452 42.308 0.00 0.00 0.00 1.40
1646 1875 5.362143 GGTAGTACTCCCTCCGTTCTAAAAT 59.638 44.000 0.00 0.00 0.00 1.82
1647 1876 4.706962 GGTAGTACTCCCTCCGTTCTAAAA 59.293 45.833 0.00 0.00 0.00 1.52
1648 1877 4.018050 AGGTAGTACTCCCTCCGTTCTAAA 60.018 45.833 0.11 0.00 0.00 1.85
1649 1878 3.525199 AGGTAGTACTCCCTCCGTTCTAA 59.475 47.826 0.11 0.00 0.00 2.10
1650 1879 3.118531 AGGTAGTACTCCCTCCGTTCTA 58.881 50.000 0.11 0.00 0.00 2.10
1651 1880 1.921748 AGGTAGTACTCCCTCCGTTCT 59.078 52.381 0.11 0.00 0.00 3.01
1652 1881 2.433662 AGGTAGTACTCCCTCCGTTC 57.566 55.000 0.11 0.00 0.00 3.95
1653 1882 3.203934 ACATAGGTAGTACTCCCTCCGTT 59.796 47.826 10.79 0.00 32.08 4.44
1654 1883 2.782341 ACATAGGTAGTACTCCCTCCGT 59.218 50.000 10.79 6.59 32.08 4.69
1655 1884 3.505480 ACATAGGTAGTACTCCCTCCG 57.495 52.381 10.79 5.95 32.08 4.63
1656 1885 6.608922 TCTTTACATAGGTAGTACTCCCTCC 58.391 44.000 10.79 4.42 32.08 4.30
1657 1886 8.530804 TTTCTTTACATAGGTAGTACTCCCTC 57.469 38.462 10.79 0.00 32.08 4.30
1686 1915 8.789782 TCTAACTACTACTCCCTAAAGGATCTT 58.210 37.037 0.00 0.00 46.33 2.40
1687 1916 8.347557 TCTAACTACTACTCCCTAAAGGATCT 57.652 38.462 0.00 0.00 46.33 2.75
1688 1917 8.993404 TTCTAACTACTACTCCCTAAAGGATC 57.007 38.462 0.00 0.00 46.33 3.36
1689 1918 8.567851 ACTTCTAACTACTACTCCCTAAAGGAT 58.432 37.037 0.00 0.00 46.33 3.24
1690 1919 7.937591 ACTTCTAACTACTACTCCCTAAAGGA 58.062 38.462 0.00 0.00 44.91 3.36
1691 1920 8.592529 AACTTCTAACTACTACTCCCTAAAGG 57.407 38.462 0.00 0.00 0.00 3.11
1773 2004 2.813172 GTTTTCCGTCAATTAACCGGGA 59.187 45.455 6.32 0.00 41.98 5.14
1797 2029 1.801771 TGGATTGTGTCGGTTTTAGCG 59.198 47.619 0.00 0.00 40.97 4.26
1848 2081 0.179032 TGTGTTTCATGTCGGTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
1908 2142 0.035317 TGTGAGTGTGGCCATCTGTC 59.965 55.000 9.72 4.43 0.00 3.51
1923 2157 2.011222 GGAGTTGTCGGTTGTTTGTGA 58.989 47.619 0.00 0.00 0.00 3.58
1956 2190 2.035066 GCATATTTCCCTTGCGATGCTT 59.965 45.455 0.00 0.00 37.34 3.91
2006 2240 0.955919 GACAGGCACTAGGTGGTTGC 60.956 60.000 0.00 0.00 36.02 4.17
2007 2241 0.396435 TGACAGGCACTAGGTGGTTG 59.604 55.000 0.00 0.00 36.02 3.77
2015 2251 0.530744 GGTGACGATGACAGGCACTA 59.469 55.000 2.08 0.00 36.02 2.74
2054 2290 2.547218 GGTTGCTGTGAAGTCGGAACTA 60.547 50.000 0.00 0.00 33.48 2.24
2057 2293 0.179234 TGGTTGCTGTGAAGTCGGAA 59.821 50.000 0.00 0.00 0.00 4.30
2080 2316 1.228154 GGTGCTCTTCCGTGGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
2120 2358 0.107848 CGGATCGGGCTTTGGTAGTT 60.108 55.000 0.00 0.00 0.00 2.24
2149 2387 2.171237 ACAATGATGGCATCGAGAGGAA 59.829 45.455 21.65 3.48 32.35 3.36
2185 2423 4.770874 GCTGTTTCGGGGGCGCTA 62.771 66.667 7.64 0.00 0.00 4.26
2223 2461 4.196778 TGGTTGGCGGCACCTTCA 62.197 61.111 23.75 13.14 40.22 3.02
2274 2512 3.544167 CTCGGAGCCGGCTACATCG 62.544 68.421 37.08 30.15 40.25 3.84
2376 2614 3.083997 CTCCCCTCTTCCCGTGGG 61.084 72.222 0.00 0.00 44.48 4.61
2379 2617 1.990614 GCTTCTCCCCTCTTCCCGT 60.991 63.158 0.00 0.00 0.00 5.28
2406 2644 1.532868 CTTTCTTGGAAGCGTCACTGG 59.467 52.381 1.14 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.