Multiple sequence alignment - TraesCS5D01G531100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G531100 chr5D 100.000 8344 0 0 1 8344 546858138 546866481 0.000000e+00 15409.0
1 TraesCS5D01G531100 chr5D 91.667 84 7 0 185 268 452496305 452496388 5.290000e-22 117.0
2 TraesCS5D01G531100 chr5B 92.679 3169 174 32 638 3792 690025328 690028452 0.000000e+00 4514.0
3 TraesCS5D01G531100 chr5B 94.087 1725 74 8 5643 7359 690032919 690034623 0.000000e+00 2595.0
4 TraesCS5D01G531100 chr5B 93.019 1017 40 7 4672 5661 690031797 690032809 0.000000e+00 1456.0
5 TraesCS5D01G531100 chr5B 92.289 804 45 5 7446 8237 690034642 690035440 0.000000e+00 1125.0
6 TraesCS5D01G531100 chr5B 94.011 718 43 0 3961 4678 690028452 690029169 0.000000e+00 1088.0
7 TraesCS5D01G531100 chr5B 85.821 536 43 16 19 552 690024812 690025316 9.530000e-149 538.0
8 TraesCS5D01G531100 chr5B 90.476 84 8 0 185 268 552840585 552840668 2.460000e-20 111.0
9 TraesCS5D01G531100 chr5B 97.500 40 1 0 3523 3562 294561130 294561091 1.500000e-07 69.4
10 TraesCS5D01G531100 chr4A 93.290 2474 119 30 630 3078 622133166 622130715 0.000000e+00 3605.0
11 TraesCS5D01G531100 chr4A 92.178 2557 127 30 4979 7495 622129064 622126541 0.000000e+00 3546.0
12 TraesCS5D01G531100 chr4A 95.471 1656 57 6 3113 4765 622130720 622129080 0.000000e+00 2627.0
13 TraesCS5D01G531100 chr4A 88.351 558 36 10 1 558 622133684 622133156 1.960000e-180 643.0
14 TraesCS5D01G531100 chr4A 90.000 90 8 1 554 642 464695910 464695821 1.900000e-21 115.0
15 TraesCS5D01G531100 chr4A 91.489 47 4 0 3514 3560 92731309 92731355 1.940000e-06 65.8
16 TraesCS5D01G531100 chr6B 97.297 111 3 0 8234 8344 164818019 164818129 1.110000e-43 189.0
17 TraesCS5D01G531100 chr6B 94.215 121 6 1 8224 8344 240046883 240047002 5.140000e-42 183.0
18 TraesCS5D01G531100 chr6B 93.750 80 5 0 554 633 278674697 278674618 4.090000e-23 121.0
19 TraesCS5D01G531100 chr5A 97.297 111 3 0 8234 8344 243809765 243809655 1.110000e-43 189.0
20 TraesCS5D01G531100 chr5A 90.476 84 8 0 185 268 571428143 571428226 2.460000e-20 111.0
21 TraesCS5D01G531100 chr3B 97.297 111 3 0 8234 8344 796470807 796470697 1.110000e-43 189.0
22 TraesCS5D01G531100 chr2B 95.726 117 4 1 8228 8344 467863236 467863121 3.980000e-43 187.0
23 TraesCS5D01G531100 chrUn 94.828 116 6 0 8229 8344 365634786 365634671 1.850000e-41 182.0
24 TraesCS5D01G531100 chr7B 94.828 116 6 0 8229 8344 726360574 726360459 1.850000e-41 182.0
25 TraesCS5D01G531100 chr7B 95.349 43 2 0 3518 3560 8886668 8886626 1.500000e-07 69.4
26 TraesCS5D01G531100 chr6A 94.872 117 5 1 8224 8340 183365920 183365805 1.850000e-41 182.0
27 TraesCS5D01G531100 chr6A 93.750 80 5 0 554 633 209391425 209391346 4.090000e-23 121.0
28 TraesCS5D01G531100 chr6A 89.130 92 8 2 554 644 302776597 302776507 6.850000e-21 113.0
29 TraesCS5D01G531100 chr4D 94.118 119 6 1 8226 8344 69494133 69494250 6.650000e-41 180.0
30 TraesCS5D01G531100 chr4D 93.182 44 3 0 3517 3560 371144830 371144787 1.940000e-06 65.8
31 TraesCS5D01G531100 chr3D 90.217 92 9 0 551 642 610350746 610350837 4.090000e-23 121.0
32 TraesCS5D01G531100 chr3A 90.217 92 9 0 551 642 744438429 744438520 4.090000e-23 121.0
33 TraesCS5D01G531100 chr1D 91.765 85 7 0 554 638 413217310 413217226 1.470000e-22 119.0
34 TraesCS5D01G531100 chr1B 91.011 89 7 1 554 642 556993855 556993768 1.470000e-22 119.0
35 TraesCS5D01G531100 chr2D 88.421 95 10 1 554 648 649145861 649145954 6.850000e-21 113.0
36 TraesCS5D01G531100 chr7A 95.556 45 2 0 3518 3562 683491126 683491082 1.160000e-08 73.1
37 TraesCS5D01G531100 chr4B 95.349 43 2 0 3520 3562 119264861 119264903 1.500000e-07 69.4
38 TraesCS5D01G531100 chr4B 93.182 44 3 0 3517 3560 456390414 456390371 1.940000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G531100 chr5D 546858138 546866481 8343 False 15409.00 15409 100.000000 1 8344 1 chr5D.!!$F2 8343
1 TraesCS5D01G531100 chr5B 690024812 690035440 10628 False 1886.00 4514 91.984333 19 8237 6 chr5B.!!$F2 8218
2 TraesCS5D01G531100 chr4A 622126541 622133684 7143 True 2605.25 3605 92.322500 1 7495 4 chr4A.!!$R2 7494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 251 0.034756 CCTCACCGTCAACATCACCA 59.965 55.000 0.00 0.00 0.00 4.17 F
936 943 0.108662 GTGCAGCTTTATTGTGGGCC 60.109 55.000 0.00 0.00 0.00 5.80 F
1188 1195 0.310854 GGGTTTGCAAGTTCGAGTGG 59.689 55.000 0.00 0.00 0.00 4.00 F
1276 1283 0.517316 GGCACATTTGGACTCGTGTC 59.483 55.000 9.11 9.11 42.22 3.67 F
2573 2597 0.750911 GAAGAGCAGCCCTGGAATGG 60.751 60.000 0.00 0.00 0.00 3.16 F
3340 3410 1.619654 TGGTGAGGTTGCTGGAAATG 58.380 50.000 0.00 0.00 0.00 2.32 F
4275 4347 2.040947 TCATTATGGGCCAGTGTTCACA 59.959 45.455 13.78 0.00 0.00 3.58 F
5239 7965 0.034670 AGCAGTTCCAAGATCCAGGC 60.035 55.000 0.00 0.00 0.00 4.85 F
5893 8762 0.112412 AATGGCGAAAACTGGGACCT 59.888 50.000 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1768 0.179468 TACATGGCCCCTAAAGTCGC 59.821 55.000 0.00 0.00 0.00 5.19 R
2335 2359 0.754217 ATCTGGGCCACACATGCATC 60.754 55.000 0.00 0.00 0.00 3.91 R
2833 2858 0.817654 TCACTACCATCAGCCAGTCG 59.182 55.000 0.00 0.00 0.00 4.18 R
3114 3184 2.109834 ACCCACATGGAAATGGTGAAGA 59.890 45.455 0.00 0.00 37.39 2.87 R
4412 4484 1.741706 GCATGCAAGCACTCTACATGT 59.258 47.619 14.21 2.69 38.38 3.21 R
5075 7801 0.316204 AGCAAAACATCAGTGCCTGC 59.684 50.000 0.00 0.00 39.13 4.85 R
5893 8762 0.040499 GGCACCCATTTTAGGTCCCA 59.960 55.000 0.00 0.00 35.04 4.37 R
6408 9278 0.983467 TACAATGGCAGCTCTCACCA 59.017 50.000 0.00 0.00 37.99 4.17 R
7551 10446 0.466189 ACAACTGCACCAACAGGGAG 60.466 55.000 0.00 0.00 42.21 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 149 2.956987 CCCAAAAGCGCCTCACAG 59.043 61.111 2.29 0.00 0.00 3.66
213 216 3.702048 CGTCTTCCGCCCCAAGGA 61.702 66.667 0.00 0.00 35.69 3.36
232 235 0.179040 ACGACGAGATCTCCCTCCTC 60.179 60.000 17.13 3.56 0.00 3.71
233 236 0.179043 CGACGAGATCTCCCTCCTCA 60.179 60.000 17.13 0.00 0.00 3.86
234 237 1.314730 GACGAGATCTCCCTCCTCAC 58.685 60.000 17.13 0.00 0.00 3.51
236 239 1.169661 CGAGATCTCCCTCCTCACCG 61.170 65.000 17.13 0.00 0.00 4.94
237 240 0.106419 GAGATCTCCCTCCTCACCGT 60.106 60.000 12.00 0.00 0.00 4.83
238 241 0.106419 AGATCTCCCTCCTCACCGTC 60.106 60.000 0.00 0.00 0.00 4.79
239 242 0.395862 GATCTCCCTCCTCACCGTCA 60.396 60.000 0.00 0.00 0.00 4.35
240 243 0.041238 ATCTCCCTCCTCACCGTCAA 59.959 55.000 0.00 0.00 0.00 3.18
241 244 0.898789 TCTCCCTCCTCACCGTCAAC 60.899 60.000 0.00 0.00 0.00 3.18
242 245 1.152419 TCCCTCCTCACCGTCAACA 60.152 57.895 0.00 0.00 0.00 3.33
243 246 0.544357 TCCCTCCTCACCGTCAACAT 60.544 55.000 0.00 0.00 0.00 2.71
244 247 0.108138 CCCTCCTCACCGTCAACATC 60.108 60.000 0.00 0.00 0.00 3.06
245 248 0.608130 CCTCCTCACCGTCAACATCA 59.392 55.000 0.00 0.00 0.00 3.07
246 249 1.673033 CCTCCTCACCGTCAACATCAC 60.673 57.143 0.00 0.00 0.00 3.06
247 250 0.320374 TCCTCACCGTCAACATCACC 59.680 55.000 0.00 0.00 0.00 4.02
248 251 0.034756 CCTCACCGTCAACATCACCA 59.965 55.000 0.00 0.00 0.00 4.17
251 254 0.867746 CACCGTCAACATCACCACAG 59.132 55.000 0.00 0.00 0.00 3.66
281 284 2.158943 CCCGTAAGACATTTCCCTCTCC 60.159 54.545 0.00 0.00 43.02 3.71
309 312 0.981943 CCCTACTTCCCCGTGTCTTT 59.018 55.000 0.00 0.00 0.00 2.52
329 332 1.941377 TTGGATGCTGGGCTTGAATT 58.059 45.000 0.00 0.00 0.00 2.17
344 347 6.218746 GGCTTGAATTGTTCTGAAGAAATGT 58.781 36.000 3.98 0.00 35.58 2.71
348 351 6.808829 TGAATTGTTCTGAAGAAATGTTGCT 58.191 32.000 3.98 0.00 35.58 3.91
354 357 6.321181 TGTTCTGAAGAAATGTTGCTTAAGGT 59.679 34.615 4.29 0.00 35.58 3.50
371 374 4.691326 AAGGTCCAGGCTTATTAGCTAC 57.309 45.455 3.39 0.00 46.90 3.58
372 375 3.654273 AGGTCCAGGCTTATTAGCTACA 58.346 45.455 3.39 0.00 46.90 2.74
373 376 3.643792 AGGTCCAGGCTTATTAGCTACAG 59.356 47.826 3.39 0.00 46.90 2.74
385 388 8.756864 GCTTATTAGCTACAGTACATTCTTGAC 58.243 37.037 0.00 0.00 44.27 3.18
406 409 7.028926 TGACGCAAACCAGAAATTTTACTTA 57.971 32.000 0.00 0.00 0.00 2.24
500 503 5.828299 TCAACTGGAAACAACAAACTAGG 57.172 39.130 0.00 0.00 42.06 3.02
521 524 6.588719 AGGCAGAAATTTGTAACATGCTTA 57.411 33.333 0.00 0.00 32.89 3.09
522 525 7.174107 AGGCAGAAATTTGTAACATGCTTAT 57.826 32.000 0.00 0.00 32.89 1.73
536 539 2.930950 TGCTTATGGTTGGTAGGATGC 58.069 47.619 0.00 0.00 0.00 3.91
553 556 0.112995 TGCCAGCAGGGTTGAGAATT 59.887 50.000 0.00 0.00 39.65 2.17
554 557 1.354031 TGCCAGCAGGGTTGAGAATTA 59.646 47.619 0.00 0.00 39.65 1.40
555 558 1.745653 GCCAGCAGGGTTGAGAATTAC 59.254 52.381 0.00 0.00 39.65 1.89
556 559 2.619074 GCCAGCAGGGTTGAGAATTACT 60.619 50.000 0.00 0.00 39.65 2.24
558 561 4.192317 CCAGCAGGGTTGAGAATTACTAC 58.808 47.826 0.00 0.00 0.00 2.73
559 562 4.192317 CAGCAGGGTTGAGAATTACTACC 58.808 47.826 7.02 7.02 33.70 3.18
560 563 4.080863 CAGCAGGGTTGAGAATTACTACCT 60.081 45.833 12.53 0.00 34.58 3.08
562 565 5.014228 AGCAGGGTTGAGAATTACTACCTTT 59.986 40.000 12.53 3.39 34.58 3.11
563 566 5.123979 GCAGGGTTGAGAATTACTACCTTTG 59.876 44.000 12.53 12.01 34.58 2.77
564 567 6.238648 CAGGGTTGAGAATTACTACCTTTGT 58.761 40.000 12.53 0.00 34.58 2.83
565 568 6.715264 CAGGGTTGAGAATTACTACCTTTGTT 59.285 38.462 12.53 0.00 34.58 2.83
566 569 7.230712 CAGGGTTGAGAATTACTACCTTTGTTT 59.769 37.037 12.53 0.00 34.58 2.83
567 570 7.447545 AGGGTTGAGAATTACTACCTTTGTTTC 59.552 37.037 12.53 0.00 34.58 2.78
568 571 7.447545 GGGTTGAGAATTACTACCTTTGTTTCT 59.552 37.037 12.53 0.00 34.58 2.52
569 572 9.498176 GGTTGAGAATTACTACCTTTGTTTCTA 57.502 33.333 7.91 0.00 32.26 2.10
588 591 9.504708 TGTTTCTAAATATAAGACGTTTTGGGA 57.495 29.630 0.83 0.00 0.00 4.37
589 592 9.983804 GTTTCTAAATATAAGACGTTTTGGGAG 57.016 33.333 0.83 0.00 0.00 4.30
590 593 9.729281 TTTCTAAATATAAGACGTTTTGGGAGT 57.271 29.630 0.83 0.00 0.00 3.85
591 594 9.729281 TTCTAAATATAAGACGTTTTGGGAGTT 57.271 29.630 0.83 0.00 0.00 3.01
592 595 9.158233 TCTAAATATAAGACGTTTTGGGAGTTG 57.842 33.333 0.83 0.00 0.00 3.16
593 596 6.753107 AATATAAGACGTTTTGGGAGTTGG 57.247 37.500 0.83 0.00 0.00 3.77
594 597 2.721425 AAGACGTTTTGGGAGTTGGA 57.279 45.000 0.00 0.00 0.00 3.53
595 598 2.721425 AGACGTTTTGGGAGTTGGAA 57.279 45.000 0.00 0.00 0.00 3.53
596 599 3.223674 AGACGTTTTGGGAGTTGGAAT 57.776 42.857 0.00 0.00 0.00 3.01
597 600 3.562182 AGACGTTTTGGGAGTTGGAATT 58.438 40.909 0.00 0.00 0.00 2.17
598 601 3.317993 AGACGTTTTGGGAGTTGGAATTG 59.682 43.478 0.00 0.00 0.00 2.32
599 602 3.292460 ACGTTTTGGGAGTTGGAATTGA 58.708 40.909 0.00 0.00 0.00 2.57
600 603 3.702045 ACGTTTTGGGAGTTGGAATTGAA 59.298 39.130 0.00 0.00 0.00 2.69
601 604 4.048504 CGTTTTGGGAGTTGGAATTGAAC 58.951 43.478 0.00 0.00 0.00 3.18
602 605 4.202111 CGTTTTGGGAGTTGGAATTGAACT 60.202 41.667 0.05 0.05 36.33 3.01
603 606 4.935352 TTTGGGAGTTGGAATTGAACTG 57.065 40.909 4.53 0.00 33.71 3.16
604 607 2.238521 TGGGAGTTGGAATTGAACTGC 58.761 47.619 9.00 9.00 40.12 4.40
606 609 2.238521 GGAGTTGGAATTGAACTGCCA 58.761 47.619 4.53 0.00 36.16 4.92
607 610 2.627699 GGAGTTGGAATTGAACTGCCAA 59.372 45.455 4.53 0.00 36.16 4.52
608 611 3.069443 GGAGTTGGAATTGAACTGCCAAA 59.931 43.478 4.53 0.00 41.61 3.28
609 612 4.442753 GGAGTTGGAATTGAACTGCCAAAA 60.443 41.667 4.53 0.00 41.61 2.44
610 613 4.441792 AGTTGGAATTGAACTGCCAAAAC 58.558 39.130 0.00 0.00 41.61 2.43
611 614 3.090952 TGGAATTGAACTGCCAAAACG 57.909 42.857 0.00 0.00 0.00 3.60
612 615 2.428890 TGGAATTGAACTGCCAAAACGT 59.571 40.909 0.00 0.00 0.00 3.99
613 616 3.049912 GGAATTGAACTGCCAAAACGTC 58.950 45.455 0.00 0.00 0.00 4.34
614 617 3.243401 GGAATTGAACTGCCAAAACGTCT 60.243 43.478 0.00 0.00 0.00 4.18
615 618 4.359706 GAATTGAACTGCCAAAACGTCTT 58.640 39.130 0.00 0.00 0.00 3.01
616 619 5.506649 GGAATTGAACTGCCAAAACGTCTTA 60.507 40.000 0.00 0.00 0.00 2.10
617 620 5.705609 ATTGAACTGCCAAAACGTCTTAT 57.294 34.783 0.00 0.00 0.00 1.73
618 621 6.811253 ATTGAACTGCCAAAACGTCTTATA 57.189 33.333 0.00 0.00 0.00 0.98
619 622 6.811253 TTGAACTGCCAAAACGTCTTATAT 57.189 33.333 0.00 0.00 0.00 0.86
620 623 6.811253 TGAACTGCCAAAACGTCTTATATT 57.189 33.333 0.00 0.00 0.00 1.28
621 624 7.209471 TGAACTGCCAAAACGTCTTATATTT 57.791 32.000 0.00 0.00 0.00 1.40
622 625 8.325421 TGAACTGCCAAAACGTCTTATATTTA 57.675 30.769 0.00 0.00 0.00 1.40
623 626 8.447833 TGAACTGCCAAAACGTCTTATATTTAG 58.552 33.333 0.00 0.00 0.00 1.85
624 627 7.316544 ACTGCCAAAACGTCTTATATTTAGG 57.683 36.000 0.00 0.00 0.00 2.69
625 628 7.107542 ACTGCCAAAACGTCTTATATTTAGGA 58.892 34.615 0.00 0.00 0.00 2.94
626 629 7.608761 ACTGCCAAAACGTCTTATATTTAGGAA 59.391 33.333 0.00 0.00 0.00 3.36
627 630 7.754625 TGCCAAAACGTCTTATATTTAGGAAC 58.245 34.615 0.00 0.00 0.00 3.62
628 631 7.390996 TGCCAAAACGTCTTATATTTAGGAACA 59.609 33.333 0.00 0.00 0.00 3.18
629 632 7.908601 GCCAAAACGTCTTATATTTAGGAACAG 59.091 37.037 0.00 0.00 0.00 3.16
630 633 9.158233 CCAAAACGTCTTATATTTAGGAACAGA 57.842 33.333 0.00 0.00 0.00 3.41
632 635 8.943909 AAACGTCTTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
633 636 7.657023 ACGTCTTATATTTAGGAACAGAGGT 57.343 36.000 0.00 0.00 0.00 3.85
634 637 8.757982 ACGTCTTATATTTAGGAACAGAGGTA 57.242 34.615 0.00 0.00 0.00 3.08
635 638 8.848182 ACGTCTTATATTTAGGAACAGAGGTAG 58.152 37.037 0.00 0.00 0.00 3.18
703 706 6.988522 TCTTGCAATAGTGTAGTACTGAACA 58.011 36.000 5.39 0.00 40.65 3.18
710 713 8.700644 CAATAGTGTAGTACTGAACACAGTTTC 58.299 37.037 24.14 3.58 46.71 2.78
739 744 2.395988 AATCACCAGTCACCTGCGCA 62.396 55.000 10.98 10.98 37.38 6.09
740 745 2.189191 ATCACCAGTCACCTGCGCAT 62.189 55.000 12.24 0.00 37.38 4.73
752 757 1.153449 TGCGCATACAGTACAGGGC 60.153 57.895 5.66 13.90 39.95 5.19
753 758 1.153449 GCGCATACAGTACAGGGCA 60.153 57.895 0.30 0.00 39.41 5.36
775 780 4.631813 CACAGGGTGCTTAAATCACTACTC 59.368 45.833 7.26 0.00 34.97 2.59
778 783 4.080863 AGGGTGCTTAAATCACTACTCCAG 60.081 45.833 7.26 0.00 34.97 3.86
780 785 5.488341 GGTGCTTAAATCACTACTCCAGAA 58.512 41.667 7.26 0.00 34.97 3.02
782 787 6.430000 GGTGCTTAAATCACTACTCCAGAAAA 59.570 38.462 7.26 0.00 34.97 2.29
783 788 7.040686 GGTGCTTAAATCACTACTCCAGAAAAA 60.041 37.037 7.26 0.00 34.97 1.94
823 828 4.814234 TCAGTTCACAACTTCACATGGTAC 59.186 41.667 0.00 0.00 40.46 3.34
828 833 5.547465 TCACAACTTCACATGGTACTTAGG 58.453 41.667 0.00 0.00 0.00 2.69
840 845 3.585289 TGGTACTTAGGATTGAGCAACCA 59.415 43.478 0.00 0.00 32.77 3.67
860 865 9.364989 GCAACCAGCAATATTAAATAAACAGAA 57.635 29.630 0.00 0.00 44.79 3.02
890 895 0.176680 CCAGCAGCCACTACCACTAG 59.823 60.000 0.00 0.00 0.00 2.57
891 896 0.460987 CAGCAGCCACTACCACTAGC 60.461 60.000 0.00 0.00 0.00 3.42
893 898 0.741221 GCAGCCACTACCACTAGCAC 60.741 60.000 0.00 0.00 0.00 4.40
895 900 1.221021 GCCACTACCACTAGCACCC 59.779 63.158 0.00 0.00 0.00 4.61
896 901 1.515954 CCACTACCACTAGCACCCG 59.484 63.158 0.00 0.00 0.00 5.28
897 902 1.515954 CACTACCACTAGCACCCGG 59.484 63.158 0.00 0.00 0.00 5.73
898 903 1.684734 ACTACCACTAGCACCCGGG 60.685 63.158 22.25 22.25 0.00 5.73
899 904 1.380785 CTACCACTAGCACCCGGGA 60.381 63.158 32.02 2.56 0.00 5.14
901 906 1.866483 TACCACTAGCACCCGGGAGA 61.866 60.000 32.02 7.93 0.00 3.71
924 929 2.507452 TGCAGTGACTGTGCAGCT 59.493 55.556 14.82 0.00 45.96 4.24
927 934 1.229428 GCAGTGACTGTGCAGCTTTA 58.771 50.000 14.82 0.00 40.86 1.85
936 943 0.108662 GTGCAGCTTTATTGTGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
954 961 1.006102 CGGAGCCGTCTTTGTCACT 60.006 57.895 0.00 0.00 34.35 3.41
958 965 1.544691 GAGCCGTCTTTGTCACTCCTA 59.455 52.381 0.00 0.00 0.00 2.94
959 966 1.546476 AGCCGTCTTTGTCACTCCTAG 59.454 52.381 0.00 0.00 0.00 3.02
1011 1018 2.495669 TCAGACGATAATGGAGTGTGCA 59.504 45.455 0.00 0.00 0.00 4.57
1016 1023 2.279741 GATAATGGAGTGTGCAGCGAA 58.720 47.619 0.00 0.00 0.00 4.70
1032 1039 2.016905 CGAAGGGGATAGTGGAGGAT 57.983 55.000 0.00 0.00 0.00 3.24
1127 1134 5.795972 GGTAGCACCTATCCCTTTATCTTC 58.204 45.833 0.00 0.00 34.73 2.87
1128 1135 4.984146 AGCACCTATCCCTTTATCTTCC 57.016 45.455 0.00 0.00 0.00 3.46
1188 1195 0.310854 GGGTTTGCAAGTTCGAGTGG 59.689 55.000 0.00 0.00 0.00 4.00
1210 1217 3.866651 GTGCTCTAGCTCCAAGAATGAA 58.133 45.455 3.26 0.00 42.66 2.57
1221 1228 4.283337 TCCAAGAATGAATGGCATGTCAT 58.717 39.130 7.07 7.07 37.28 3.06
1276 1283 0.517316 GGCACATTTGGACTCGTGTC 59.483 55.000 9.11 9.11 42.22 3.67
1333 1341 8.084684 GTGCTTCTAGATTGATTTTTCTTTGGT 58.915 33.333 0.00 0.00 0.00 3.67
1404 1413 8.190784 CCTTTCGGTGAAAATATTGCTAGAAAT 58.809 33.333 0.51 0.51 30.84 2.17
1432 1441 2.373169 ACTTGATTCTTGGAGGCTCACA 59.627 45.455 17.69 9.16 0.00 3.58
1549 1558 5.064452 GGAGATATCAAACTGCAGACAAGTG 59.936 44.000 23.35 10.29 0.00 3.16
1647 1656 5.106157 GGGGTGTTTGATAGACTTCATGTTG 60.106 44.000 0.00 0.00 0.00 3.33
1649 1658 6.206634 GGGTGTTTGATAGACTTCATGTTGAA 59.793 38.462 0.00 0.00 34.79 2.69
1756 1768 7.659186 AGGTAGCAGAATTATACTAGGAAACG 58.341 38.462 0.00 0.00 0.00 3.60
1767 1779 2.094338 ACTAGGAAACGCGACTTTAGGG 60.094 50.000 15.93 0.00 0.00 3.53
2009 2021 1.067846 CACATTCTCCGTCGAACCTCA 60.068 52.381 0.00 0.00 0.00 3.86
2055 2071 9.667107 TTCAAAATAGTGATATTCCGTTTCTCT 57.333 29.630 0.00 0.00 0.00 3.10
2165 2188 1.160137 CTGCACTTAACTCACCTGGC 58.840 55.000 0.00 0.00 0.00 4.85
2335 2359 4.260170 CTGAAAGGACTCTGGAAATCAGG 58.740 47.826 0.00 0.00 43.53 3.86
2483 2507 8.723942 ATTAGAAAACTGTACATGCCTTAGAG 57.276 34.615 0.00 0.00 0.00 2.43
2487 2511 6.360370 AAACTGTACATGCCTTAGAGAAGA 57.640 37.500 0.00 0.00 34.25 2.87
2547 2571 1.985473 AAGAAATGCTCAGTGTGCCA 58.015 45.000 14.25 3.63 0.00 4.92
2549 2573 1.202855 AGAAATGCTCAGTGTGCCAGT 60.203 47.619 14.25 0.00 0.00 4.00
2573 2597 0.750911 GAAGAGCAGCCCTGGAATGG 60.751 60.000 0.00 0.00 0.00 3.16
2587 2611 5.658190 CCCTGGAATGGTCTTGTCAATTAAT 59.342 40.000 0.00 0.00 0.00 1.40
2588 2612 6.833416 CCCTGGAATGGTCTTGTCAATTAATA 59.167 38.462 0.00 0.00 0.00 0.98
2589 2613 7.341769 CCCTGGAATGGTCTTGTCAATTAATAA 59.658 37.037 0.00 0.00 0.00 1.40
2590 2614 8.748412 CCTGGAATGGTCTTGTCAATTAATAAA 58.252 33.333 0.00 0.00 0.00 1.40
2698 2722 4.450976 TGATCTTCCATGTATTGGGAACG 58.549 43.478 0.00 0.00 46.45 3.95
3086 3156 8.604035 TGAATAATTTCGAGTCTTTCTACATGC 58.396 33.333 0.00 0.00 34.39 4.06
3087 3157 8.723942 AATAATTTCGAGTCTTTCTACATGCT 57.276 30.769 0.00 0.00 0.00 3.79
3088 3158 6.654793 AATTTCGAGTCTTTCTACATGCTC 57.345 37.500 0.00 0.00 0.00 4.26
3089 3159 5.392767 TTTCGAGTCTTTCTACATGCTCT 57.607 39.130 0.00 0.00 0.00 4.09
3090 3160 4.624336 TCGAGTCTTTCTACATGCTCTC 57.376 45.455 0.00 0.00 0.00 3.20
3091 3161 4.265893 TCGAGTCTTTCTACATGCTCTCT 58.734 43.478 0.00 0.00 0.00 3.10
3092 3162 4.702612 TCGAGTCTTTCTACATGCTCTCTT 59.297 41.667 0.00 0.00 0.00 2.85
3093 3163 5.184096 TCGAGTCTTTCTACATGCTCTCTTT 59.816 40.000 0.00 0.00 0.00 2.52
3094 3164 5.866633 CGAGTCTTTCTACATGCTCTCTTTT 59.133 40.000 0.00 0.00 0.00 2.27
3095 3165 6.367422 CGAGTCTTTCTACATGCTCTCTTTTT 59.633 38.462 0.00 0.00 0.00 1.94
3096 3166 7.411372 CGAGTCTTTCTACATGCTCTCTTTTTC 60.411 40.741 0.00 0.00 0.00 2.29
3097 3167 7.449247 AGTCTTTCTACATGCTCTCTTTTTCT 58.551 34.615 0.00 0.00 0.00 2.52
3098 3168 7.387397 AGTCTTTCTACATGCTCTCTTTTTCTG 59.613 37.037 0.00 0.00 0.00 3.02
3099 3169 6.652481 TCTTTCTACATGCTCTCTTTTTCTGG 59.348 38.462 0.00 0.00 0.00 3.86
3100 3170 5.489792 TCTACATGCTCTCTTTTTCTGGT 57.510 39.130 0.00 0.00 0.00 4.00
3101 3171 5.482908 TCTACATGCTCTCTTTTTCTGGTC 58.517 41.667 0.00 0.00 0.00 4.02
3102 3172 4.090761 ACATGCTCTCTTTTTCTGGTCA 57.909 40.909 0.00 0.00 0.00 4.02
3103 3173 4.660168 ACATGCTCTCTTTTTCTGGTCAT 58.340 39.130 0.00 0.00 0.00 3.06
3104 3174 5.075493 ACATGCTCTCTTTTTCTGGTCATT 58.925 37.500 0.00 0.00 0.00 2.57
3105 3175 6.240894 ACATGCTCTCTTTTTCTGGTCATTA 58.759 36.000 0.00 0.00 0.00 1.90
3106 3176 6.373774 ACATGCTCTCTTTTTCTGGTCATTAG 59.626 38.462 0.00 0.00 0.00 1.73
3107 3177 5.248640 TGCTCTCTTTTTCTGGTCATTAGG 58.751 41.667 0.00 0.00 0.00 2.69
3108 3178 5.013079 TGCTCTCTTTTTCTGGTCATTAGGA 59.987 40.000 0.00 0.00 0.00 2.94
3109 3179 5.940470 GCTCTCTTTTTCTGGTCATTAGGAA 59.060 40.000 0.00 0.00 0.00 3.36
3110 3180 6.601217 GCTCTCTTTTTCTGGTCATTAGGAAT 59.399 38.462 0.00 0.00 0.00 3.01
3111 3181 7.201688 GCTCTCTTTTTCTGGTCATTAGGAATC 60.202 40.741 0.00 0.00 0.00 2.52
3112 3182 7.689299 TCTCTTTTTCTGGTCATTAGGAATCA 58.311 34.615 0.00 0.00 0.00 2.57
3113 3183 7.826252 TCTCTTTTTCTGGTCATTAGGAATCAG 59.174 37.037 0.00 0.00 33.10 2.90
3114 3184 7.461749 TCTTTTTCTGGTCATTAGGAATCAGT 58.538 34.615 0.00 0.00 33.39 3.41
3115 3185 7.607991 TCTTTTTCTGGTCATTAGGAATCAGTC 59.392 37.037 0.00 0.00 33.39 3.51
3116 3186 6.627087 TTTCTGGTCATTAGGAATCAGTCT 57.373 37.500 0.00 0.00 33.39 3.24
3117 3187 6.627087 TTCTGGTCATTAGGAATCAGTCTT 57.373 37.500 0.00 0.00 33.39 3.01
3126 3196 7.554118 TCATTAGGAATCAGTCTTCACCATTTC 59.446 37.037 0.00 0.00 0.00 2.17
3159 3229 9.209175 GGTATAAATGTCTCAGTGGCTAATTAG 57.791 37.037 8.20 8.20 0.00 1.73
3223 3293 7.165460 TCTTTATTCCATCGTTACTGTCTGA 57.835 36.000 0.00 0.00 0.00 3.27
3340 3410 1.619654 TGGTGAGGTTGCTGGAAATG 58.380 50.000 0.00 0.00 0.00 2.32
3544 3616 4.290985 TCCTCCATCCCAAAATAAGTGACA 59.709 41.667 0.00 0.00 0.00 3.58
3595 3667 6.013984 ACGGAGGGAGTATTAGTTTTCAGAAA 60.014 38.462 0.00 0.00 0.00 2.52
3670 3742 7.604657 TTTTGTTAATAAGAACACATGGGGT 57.395 32.000 0.00 0.00 39.02 4.95
3674 3746 7.634718 TGTTAATAAGAACACATGGGGTATGA 58.365 34.615 0.00 0.00 40.14 2.15
3766 3838 8.027189 ACAGAACTCCTTAACAAACAAAGAAAC 58.973 33.333 0.00 0.00 0.00 2.78
3800 3872 3.820467 CACATCCACTGCCTAAAACAAGA 59.180 43.478 0.00 0.00 0.00 3.02
3811 3883 7.770897 ACTGCCTAAAACAAGATACTATTCTGG 59.229 37.037 0.00 0.00 0.00 3.86
3812 3884 7.630082 TGCCTAAAACAAGATACTATTCTGGT 58.370 34.615 0.00 0.00 30.89 4.00
3814 3886 9.609346 GCCTAAAACAAGATACTATTCTGGTTA 57.391 33.333 0.00 0.00 38.64 2.85
3829 3901 3.697045 TCTGGTTACTGTTTGTGGGTTTG 59.303 43.478 0.00 0.00 0.00 2.93
3887 3959 3.119849 GCATGGGTGAACAAGTATGTGTC 60.120 47.826 0.00 0.00 40.46 3.67
3906 3978 5.359576 TGTGTCTGCAGAAACAAAATAAGGT 59.640 36.000 32.90 0.00 39.20 3.50
3958 4030 7.807433 CGATAATTTCAGAATTTGTGTTGGTCA 59.193 33.333 1.23 0.00 36.82 4.02
4043 4115 8.794335 AGATAATCCATCTTGATGTCATCATG 57.206 34.615 16.19 17.42 41.49 3.07
4061 4133 6.604396 TCATCATGTAGCATGAAACTTGGAAT 59.396 34.615 14.62 0.00 0.00 3.01
4229 4301 3.160777 AGTATAGTGTACAGTTGCGGC 57.839 47.619 8.85 0.00 0.00 6.53
4275 4347 2.040947 TCATTATGGGCCAGTGTTCACA 59.959 45.455 13.78 0.00 0.00 3.58
4412 4484 3.701664 TCTGTTATGTCCAGCTCTCTGA 58.298 45.455 0.00 0.00 42.95 3.27
4678 7386 6.801377 TCATTTGTTTCATTGACTACATTCGC 59.199 34.615 2.61 0.00 0.00 4.70
4870 7588 8.821894 CAAAATTTCTATACTCCTTCTCTTCCG 58.178 37.037 0.00 0.00 0.00 4.30
4885 7603 5.120399 TCTCTTCCGTAAAAGCAAGAACAA 58.880 37.500 0.00 0.00 0.00 2.83
4892 7610 6.474102 TCCGTAAAAGCAAGAACAAAATTCAC 59.526 34.615 0.00 0.00 0.00 3.18
4893 7611 6.254589 CCGTAAAAGCAAGAACAAAATTCACA 59.745 34.615 0.00 0.00 0.00 3.58
4957 7683 8.723942 AATAGTGTATCTTAGCTTGTCTTTGG 57.276 34.615 0.00 0.00 0.00 3.28
5021 7747 5.941555 TGGTTCCAATTTTACCACAACTT 57.058 34.783 0.00 0.00 37.04 2.66
5075 7801 7.721402 ACTGTATAGCTCTTTCAACCAGATAG 58.279 38.462 0.00 0.00 0.00 2.08
5143 7869 3.850752 TCTGAAGGACCTGAGAAAGAGT 58.149 45.455 0.00 0.00 0.00 3.24
5239 7965 0.034670 AGCAGTTCCAAGATCCAGGC 60.035 55.000 0.00 0.00 0.00 4.85
5303 8029 3.368323 CCTTGTGTTTGCCTGACAACTTT 60.368 43.478 0.00 0.00 38.23 2.66
5304 8030 4.142271 CCTTGTGTTTGCCTGACAACTTTA 60.142 41.667 0.00 0.00 38.23 1.85
5305 8031 5.451798 CCTTGTGTTTGCCTGACAACTTTAT 60.452 40.000 0.00 0.00 38.23 1.40
5306 8032 6.238897 CCTTGTGTTTGCCTGACAACTTTATA 60.239 38.462 0.00 0.00 38.23 0.98
5474 8202 9.683069 GTCATGTTCAGAATTCTTGTTTATGTT 57.317 29.630 4.86 0.00 0.00 2.71
5477 8205 6.922957 TGTTCAGAATTCTTGTTTATGTTGCC 59.077 34.615 4.86 0.00 0.00 4.52
5492 8227 2.287644 TGTTGCCTGATCGCATTATTCG 59.712 45.455 0.00 0.00 38.87 3.34
5512 8247 4.101942 TCGTTTGTGCAAACTTGATTCAC 58.898 39.130 20.88 0.00 46.21 3.18
5518 8253 4.398988 TGTGCAAACTTGATTCACTTCTGT 59.601 37.500 0.00 0.00 0.00 3.41
5584 8319 6.719365 CAATCCAACCTCGAAATCTATTCAC 58.281 40.000 0.00 0.00 0.00 3.18
5585 8320 5.414789 TCCAACCTCGAAATCTATTCACA 57.585 39.130 0.00 0.00 0.00 3.58
5657 8520 8.644216 ACATATGTGGAATGAATGCAATATTGT 58.356 29.630 16.61 0.00 0.00 2.71
5707 8570 5.233988 GTCCATAGAAGATGGTGCTACATC 58.766 45.833 11.66 11.66 45.91 3.06
5742 8605 6.388435 AGCAGAAGATGAGGCATTAAATTC 57.612 37.500 0.00 0.00 0.00 2.17
5754 8617 9.253832 TGAGGCATTAAATTCCTTTAAGATCAA 57.746 29.630 0.00 0.00 39.52 2.57
5808 8671 6.612306 AGAAAATCAAATGCTTAAGGTCGAC 58.388 36.000 7.13 7.13 0.00 4.20
5855 8719 5.192927 TGTGTTCTCTGAATTCTGTTTGGT 58.807 37.500 7.05 0.00 0.00 3.67
5887 8756 1.987770 GCATGTGAATGGCGAAAACTG 59.012 47.619 0.00 0.00 0.00 3.16
5888 8757 2.598589 CATGTGAATGGCGAAAACTGG 58.401 47.619 0.00 0.00 0.00 4.00
5889 8758 0.958091 TGTGAATGGCGAAAACTGGG 59.042 50.000 0.00 0.00 0.00 4.45
5890 8759 1.243902 GTGAATGGCGAAAACTGGGA 58.756 50.000 0.00 0.00 0.00 4.37
5891 8760 1.068541 GTGAATGGCGAAAACTGGGAC 60.069 52.381 0.00 0.00 0.00 4.46
5892 8761 0.526211 GAATGGCGAAAACTGGGACC 59.474 55.000 0.00 0.00 0.00 4.46
5893 8762 0.112412 AATGGCGAAAACTGGGACCT 59.888 50.000 0.00 0.00 0.00 3.85
5894 8763 0.609131 ATGGCGAAAACTGGGACCTG 60.609 55.000 0.00 0.00 0.00 4.00
5913 8782 2.489040 GGACCTAAAATGGGTGCCG 58.511 57.895 0.00 0.00 38.90 5.69
5994 8863 1.202687 TCGCCTCTCCTTTGCATATGG 60.203 52.381 4.56 0.00 0.00 2.74
6000 8869 1.808945 CTCCTTTGCATATGGCCGATC 59.191 52.381 4.56 0.00 43.89 3.69
6045 8914 2.550830 ACAAAAGCATGTCCGACTCT 57.449 45.000 0.00 0.00 0.00 3.24
6046 8915 2.417719 ACAAAAGCATGTCCGACTCTC 58.582 47.619 0.00 0.00 0.00 3.20
6099 8968 9.069078 GTGATTTGTTATTTCATGTGTGATCAG 57.931 33.333 0.00 0.00 33.56 2.90
6103 8972 9.628746 TTTGTTATTTCATGTGTGATCAGATTG 57.371 29.630 0.00 0.00 33.56 2.67
6106 8975 3.353370 TCATGTGTGATCAGATTGCCA 57.647 42.857 0.00 0.00 0.00 4.92
6160 9029 5.636121 AGTTTTAAGTCGATGATACACGCAA 59.364 36.000 0.00 0.00 0.00 4.85
6176 9045 4.991056 ACACGCAATACTAGCCTTCATATG 59.009 41.667 0.00 0.00 0.00 1.78
6237 9106 4.642437 TGTTCAGTATGTTGCCTGTTTTCA 59.358 37.500 0.00 0.00 37.40 2.69
6324 9194 9.263446 ACTGAGTAGTATAATTGGTTTGGAGTA 57.737 33.333 0.00 0.00 34.74 2.59
6408 9278 8.773033 ATATTTCCAGCTATCCAAATTGTTCT 57.227 30.769 0.00 0.00 0.00 3.01
6464 9334 4.707105 TCTGAGAACTTGAATTGCAGTGA 58.293 39.130 0.00 0.00 0.00 3.41
6582 9452 3.864789 AATGTGAAGTTCCCTGTCAGT 57.135 42.857 0.00 0.00 0.00 3.41
6793 9663 9.739276 ATTTATGACTTCAACTGTTTGATCCTA 57.261 29.630 0.00 0.00 41.50 2.94
6799 9669 6.772716 ACTTCAACTGTTTGATCCTATGTTGT 59.227 34.615 0.00 0.00 41.50 3.32
6828 9698 4.778427 CCTCCCTCCTTTTGTCTAGTACTT 59.222 45.833 0.00 0.00 0.00 2.24
6950 9839 5.149973 AGCATGTTTTGGCATTTCACATA 57.850 34.783 0.00 0.00 0.00 2.29
6985 9874 8.438676 TCAGCTATATTTGTAAGAGGCTTTTC 57.561 34.615 0.00 0.00 0.00 2.29
6998 9889 9.613957 GTAAGAGGCTTTTCATTTTAAGAAGTC 57.386 33.333 0.00 0.00 0.00 3.01
7050 9941 4.947388 CGTTTCAAGGAAATGATTAGGGGA 59.053 41.667 5.23 0.00 39.94 4.81
7074 9965 3.686016 TGGAGTTCCTGCAATCTTTACC 58.314 45.455 0.00 0.00 36.82 2.85
7131 10022 2.551459 CTGCATAAGCTCCATAACTGGC 59.449 50.000 0.00 0.00 42.74 4.85
7157 10048 1.123928 CTGGGACTCCCTGTATGTCC 58.876 60.000 15.64 1.79 45.70 4.02
7169 10060 5.784906 TCCCTGTATGTCCAATATATGCTCA 59.215 40.000 0.00 0.00 0.00 4.26
7208 10099 0.593263 GCTGTTGCATTATGGAGCGC 60.593 55.000 0.00 0.00 39.41 5.92
7210 10101 1.009675 GTTGCATTATGGAGCGCCG 60.010 57.895 2.29 0.00 36.79 6.46
7219 10110 1.091771 ATGGAGCGCCGATCAAACTG 61.092 55.000 2.29 0.00 36.79 3.16
7245 10136 5.006455 CACCTTCATCATCTGTCATTTCTCG 59.994 44.000 0.00 0.00 0.00 4.04
7283 10174 1.588824 CTTTCAGGCAGCCGATTGCA 61.589 55.000 5.55 0.00 45.86 4.08
7371 10263 5.163205 GCCATTTTAGCCCCCTTTTTATCAT 60.163 40.000 0.00 0.00 0.00 2.45
7393 10285 8.722480 TCATCAGAAAATATTCAGACGTTCAT 57.278 30.769 0.00 0.00 38.06 2.57
7394 10286 9.816354 TCATCAGAAAATATTCAGACGTTCATA 57.184 29.630 0.00 0.00 38.06 2.15
7408 10300 4.945246 ACGTTCATATGTGGAGGTATGAC 58.055 43.478 1.90 0.00 37.13 3.06
7419 10311 6.539173 TGTGGAGGTATGACAATGTAACTTT 58.461 36.000 0.00 0.00 0.00 2.66
7422 10314 7.174253 GTGGAGGTATGACAATGTAACTTTTCA 59.826 37.037 0.00 0.00 0.00 2.69
7490 10385 2.249844 TCTCTTGGTTGTTTCCGGTC 57.750 50.000 0.00 0.00 0.00 4.79
7503 10398 3.755112 TTCCGGTCTGTATGTGTTCAA 57.245 42.857 0.00 0.00 0.00 2.69
7550 10445 4.267690 TCATCAAATCATCAGTTCGTACGC 59.732 41.667 11.24 0.00 0.00 4.42
7551 10446 2.927477 TCAAATCATCAGTTCGTACGCC 59.073 45.455 11.24 3.34 0.00 5.68
7552 10447 2.930040 CAAATCATCAGTTCGTACGCCT 59.070 45.455 11.24 5.90 0.00 5.52
7564 10459 3.248446 TACGCCTCCCTGTTGGTGC 62.248 63.158 0.00 0.00 37.35 5.01
7570 10465 0.466189 CTCCCTGTTGGTGCAGTTGT 60.466 55.000 0.00 0.00 34.84 3.32
7630 10526 7.775120 ACCTGGATAGTTATTTGCTGAATTTG 58.225 34.615 0.00 0.00 0.00 2.32
7648 10544 2.897271 TGTGGGAATGTGGTAATGCT 57.103 45.000 0.00 0.00 0.00 3.79
7650 10546 3.884895 TGTGGGAATGTGGTAATGCTAG 58.115 45.455 0.00 0.00 0.00 3.42
7666 10562 2.230266 TGCTAGTGTTGCATACGAGTCA 59.770 45.455 11.44 8.26 35.31 3.41
7690 10586 3.942829 TCATGTGGTGATTCCTCTGTTC 58.057 45.455 0.00 0.00 37.07 3.18
7707 10603 4.576873 TCTGTTCTACAACAAATTTCGGCA 59.423 37.500 0.00 0.00 42.13 5.69
7708 10604 5.066634 TCTGTTCTACAACAAATTTCGGCAA 59.933 36.000 0.00 0.00 42.13 4.52
7732 10628 3.298686 AGTTATTTAGAAGGCCCTGGC 57.701 47.619 0.00 0.00 41.06 4.85
7802 10709 0.519519 TTAATGTGGAAACAGCGGCG 59.480 50.000 0.51 0.51 44.46 6.46
7806 10713 3.430862 TGGAAACAGCGGCGATGC 61.431 61.111 26.50 9.41 35.01 3.91
7839 10746 3.622163 TGCCGTTCTTCGAACTAAAACAA 59.378 39.130 0.00 0.00 42.86 2.83
7896 10803 7.388776 AGAATTCTTGTCGTCTGAATGATGAAA 59.611 33.333 0.88 0.00 41.82 2.69
7933 10840 7.394077 TGATGAATGATGACACTAAACCATTGT 59.606 33.333 0.00 0.00 0.00 2.71
7941 10848 5.240623 TGACACTAAACCATTGTCACAATCC 59.759 40.000 0.00 0.00 43.63 3.01
7950 10857 4.261572 CCATTGTCACAATCCAACGAACTT 60.262 41.667 0.00 0.00 0.00 2.66
8003 10910 1.226379 GCAAACGCCATCATCACCG 60.226 57.895 0.00 0.00 0.00 4.94
8049 10956 1.879380 CTTGATGCCGTTGAGGAACAA 59.121 47.619 0.00 0.00 45.00 2.83
8069 10976 4.125703 CAAAGATCATCTAGGCACAGGAC 58.874 47.826 0.00 0.00 0.00 3.85
8124 11031 2.839486 GGCAGCTAGGCATACATACA 57.161 50.000 0.00 0.00 43.51 2.29
8125 11032 3.340814 GGCAGCTAGGCATACATACAT 57.659 47.619 0.00 0.00 43.51 2.29
8172 11079 5.179742 GTCCGTGTTGATCTCTCGAGTATAT 59.820 44.000 13.13 4.51 0.00 0.86
8237 11144 5.959554 CGTTATCGGCACTTAACAATCTAC 58.040 41.667 0.00 0.00 0.00 2.59
8238 11145 5.747197 CGTTATCGGCACTTAACAATCTACT 59.253 40.000 0.00 0.00 0.00 2.57
8239 11146 6.074994 CGTTATCGGCACTTAACAATCTACTC 60.075 42.308 0.00 0.00 0.00 2.59
8240 11147 4.119442 TCGGCACTTAACAATCTACTCC 57.881 45.455 0.00 0.00 0.00 3.85
8241 11148 3.512329 TCGGCACTTAACAATCTACTCCA 59.488 43.478 0.00 0.00 0.00 3.86
8242 11149 4.161565 TCGGCACTTAACAATCTACTCCAT 59.838 41.667 0.00 0.00 0.00 3.41
8243 11150 4.508124 CGGCACTTAACAATCTACTCCATC 59.492 45.833 0.00 0.00 0.00 3.51
8244 11151 4.816925 GGCACTTAACAATCTACTCCATCC 59.183 45.833 0.00 0.00 0.00 3.51
8245 11152 4.508124 GCACTTAACAATCTACTCCATCCG 59.492 45.833 0.00 0.00 0.00 4.18
8246 11153 5.661458 CACTTAACAATCTACTCCATCCGT 58.339 41.667 0.00 0.00 0.00 4.69
8247 11154 6.106673 CACTTAACAATCTACTCCATCCGTT 58.893 40.000 0.00 0.00 0.00 4.44
8248 11155 6.255887 CACTTAACAATCTACTCCATCCGTTC 59.744 42.308 0.00 0.00 0.00 3.95
8249 11156 3.821421 ACAATCTACTCCATCCGTTCC 57.179 47.619 0.00 0.00 0.00 3.62
8250 11157 3.375699 ACAATCTACTCCATCCGTTCCT 58.624 45.455 0.00 0.00 0.00 3.36
8251 11158 4.543689 ACAATCTACTCCATCCGTTCCTA 58.456 43.478 0.00 0.00 0.00 2.94
8252 11159 4.960469 ACAATCTACTCCATCCGTTCCTAA 59.040 41.667 0.00 0.00 0.00 2.69
8253 11160 5.424252 ACAATCTACTCCATCCGTTCCTAAA 59.576 40.000 0.00 0.00 0.00 1.85
8254 11161 6.099845 ACAATCTACTCCATCCGTTCCTAAAT 59.900 38.462 0.00 0.00 0.00 1.40
8255 11162 7.289317 ACAATCTACTCCATCCGTTCCTAAATA 59.711 37.037 0.00 0.00 0.00 1.40
8256 11163 8.314751 CAATCTACTCCATCCGTTCCTAAATAT 58.685 37.037 0.00 0.00 0.00 1.28
8257 11164 7.850935 TCTACTCCATCCGTTCCTAAATATT 57.149 36.000 0.00 0.00 0.00 1.28
8258 11165 8.258850 TCTACTCCATCCGTTCCTAAATATTT 57.741 34.615 5.89 5.89 0.00 1.40
8259 11166 8.148351 TCTACTCCATCCGTTCCTAAATATTTG 58.852 37.037 11.05 1.40 0.00 2.32
8260 11167 6.659824 ACTCCATCCGTTCCTAAATATTTGT 58.340 36.000 11.05 0.00 0.00 2.83
8261 11168 6.542370 ACTCCATCCGTTCCTAAATATTTGTG 59.458 38.462 11.05 3.85 0.00 3.33
8262 11169 6.419791 TCCATCCGTTCCTAAATATTTGTGT 58.580 36.000 11.05 0.00 0.00 3.72
8263 11170 6.887545 TCCATCCGTTCCTAAATATTTGTGTT 59.112 34.615 11.05 0.00 0.00 3.32
8264 11171 7.394923 TCCATCCGTTCCTAAATATTTGTGTTT 59.605 33.333 11.05 0.00 0.00 2.83
8265 11172 7.700656 CCATCCGTTCCTAAATATTTGTGTTTC 59.299 37.037 11.05 0.00 0.00 2.78
8266 11173 7.989416 TCCGTTCCTAAATATTTGTGTTTCT 57.011 32.000 11.05 0.00 0.00 2.52
8267 11174 9.675464 ATCCGTTCCTAAATATTTGTGTTTCTA 57.325 29.630 11.05 0.00 0.00 2.10
8268 11175 9.158233 TCCGTTCCTAAATATTTGTGTTTCTAG 57.842 33.333 11.05 0.00 0.00 2.43
8269 11176 9.158233 CCGTTCCTAAATATTTGTGTTTCTAGA 57.842 33.333 11.05 0.00 0.00 2.43
8281 11188 9.956720 ATTTGTGTTTCTAGAGATTTCAACAAG 57.043 29.630 6.93 0.00 0.00 3.16
8282 11189 8.506168 TTGTGTTTCTAGAGATTTCAACAAGT 57.494 30.769 6.93 0.00 0.00 3.16
8283 11190 7.919690 TGTGTTTCTAGAGATTTCAACAAGTG 58.080 34.615 6.93 0.00 0.00 3.16
8284 11191 7.768582 TGTGTTTCTAGAGATTTCAACAAGTGA 59.231 33.333 6.93 0.00 0.00 3.41
8285 11192 8.064814 GTGTTTCTAGAGATTTCAACAAGTGAC 58.935 37.037 6.93 0.00 35.39 3.67
8286 11193 7.987458 TGTTTCTAGAGATTTCAACAAGTGACT 59.013 33.333 3.49 0.00 35.39 3.41
8287 11194 9.477484 GTTTCTAGAGATTTCAACAAGTGACTA 57.523 33.333 0.00 0.00 35.39 2.59
8288 11195 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
8289 11196 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
8290 11197 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
8291 11198 7.664082 AGAGATTTCAACAAGTGACTACATG 57.336 36.000 0.00 0.00 35.39 3.21
8292 11199 6.148480 AGAGATTTCAACAAGTGACTACATGC 59.852 38.462 0.00 0.00 35.39 4.06
8293 11200 4.466567 TTTCAACAAGTGACTACATGCG 57.533 40.909 0.00 0.00 35.39 4.73
8294 11201 2.412870 TCAACAAGTGACTACATGCGG 58.587 47.619 0.00 0.00 0.00 5.69
8295 11202 2.036604 TCAACAAGTGACTACATGCGGA 59.963 45.455 0.00 0.00 0.00 5.54
8296 11203 2.370281 ACAAGTGACTACATGCGGAG 57.630 50.000 0.00 0.00 0.00 4.63
8314 11221 5.998454 CGGAGCAAAATGAGTGAATCTAT 57.002 39.130 0.00 0.00 0.00 1.98
8316 11223 6.882072 CGGAGCAAAATGAGTGAATCTATAC 58.118 40.000 0.00 0.00 0.00 1.47
8317 11224 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
8318 11225 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
8319 11226 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
8320 11227 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 149 1.738099 ACGCGCTGACCAGTGATTC 60.738 57.895 5.73 0.00 41.24 2.52
213 216 0.179040 GAGGAGGGAGATCTCGTCGT 60.179 60.000 16.46 15.72 38.39 4.34
232 235 0.867746 CTGTGGTGATGTTGACGGTG 59.132 55.000 0.00 0.00 0.00 4.94
233 236 0.250295 CCTGTGGTGATGTTGACGGT 60.250 55.000 0.00 0.00 0.00 4.83
234 237 1.577328 GCCTGTGGTGATGTTGACGG 61.577 60.000 0.00 0.00 0.00 4.79
236 239 1.537202 GAAGCCTGTGGTGATGTTGAC 59.463 52.381 0.00 0.00 0.00 3.18
237 240 1.142667 TGAAGCCTGTGGTGATGTTGA 59.857 47.619 0.00 0.00 0.00 3.18
238 241 1.538512 CTGAAGCCTGTGGTGATGTTG 59.461 52.381 0.00 0.00 0.00 3.33
239 242 1.901591 CTGAAGCCTGTGGTGATGTT 58.098 50.000 0.00 0.00 0.00 2.71
240 243 0.607489 GCTGAAGCCTGTGGTGATGT 60.607 55.000 0.00 0.00 34.31 3.06
241 244 2.177950 GCTGAAGCCTGTGGTGATG 58.822 57.895 0.00 0.00 34.31 3.07
242 245 4.730487 GCTGAAGCCTGTGGTGAT 57.270 55.556 0.00 0.00 34.31 3.06
281 284 0.768609 GGGAAGTAGGGGAGGATGGG 60.769 65.000 0.00 0.00 0.00 4.00
309 312 1.941377 ATTCAAGCCCAGCATCCAAA 58.059 45.000 0.00 0.00 0.00 3.28
329 332 6.321181 ACCTTAAGCAACATTTCTTCAGAACA 59.679 34.615 0.00 0.00 33.13 3.18
344 347 4.316025 AATAAGCCTGGACCTTAAGCAA 57.684 40.909 0.00 0.00 0.00 3.91
371 374 3.249799 TGGTTTGCGTCAAGAATGTACTG 59.750 43.478 0.00 0.00 0.00 2.74
372 375 3.472652 TGGTTTGCGTCAAGAATGTACT 58.527 40.909 0.00 0.00 0.00 2.73
373 376 3.496884 TCTGGTTTGCGTCAAGAATGTAC 59.503 43.478 0.00 0.00 0.00 2.90
385 388 7.687005 TGTTAAGTAAAATTTCTGGTTTGCG 57.313 32.000 0.00 0.00 0.00 4.85
413 416 5.782893 ATGTAACTTTAACCTGCTTTGCA 57.217 34.783 0.00 0.00 36.92 4.08
471 474 7.713073 AGTTTGTTGTTTCCAGTTGAAGAAAAA 59.287 29.630 0.00 0.00 33.98 1.94
486 489 7.102993 ACAAATTTCTGCCTAGTTTGTTGTTT 58.897 30.769 0.85 0.00 39.25 2.83
487 490 6.639563 ACAAATTTCTGCCTAGTTTGTTGTT 58.360 32.000 0.85 0.00 39.25 2.83
488 491 6.220726 ACAAATTTCTGCCTAGTTTGTTGT 57.779 33.333 0.85 0.00 39.25 3.32
489 492 7.704472 TGTTACAAATTTCTGCCTAGTTTGTTG 59.296 33.333 9.73 0.00 41.58 3.33
500 503 6.813152 ACCATAAGCATGTTACAAATTTCTGC 59.187 34.615 0.00 0.00 0.00 4.26
521 524 0.106519 GCTGGCATCCTACCAACCAT 60.107 55.000 0.00 0.00 36.56 3.55
522 525 1.302949 GCTGGCATCCTACCAACCA 59.697 57.895 0.00 0.00 36.56 3.67
536 539 3.356529 AGTAATTCTCAACCCTGCTGG 57.643 47.619 1.89 1.89 41.37 4.85
562 565 9.504708 TCCCAAAACGTCTTATATTTAGAAACA 57.495 29.630 0.00 0.00 0.00 2.83
563 566 9.983804 CTCCCAAAACGTCTTATATTTAGAAAC 57.016 33.333 0.00 0.00 0.00 2.78
564 567 9.729281 ACTCCCAAAACGTCTTATATTTAGAAA 57.271 29.630 0.00 0.00 0.00 2.52
565 568 9.729281 AACTCCCAAAACGTCTTATATTTAGAA 57.271 29.630 0.00 0.00 0.00 2.10
566 569 9.158233 CAACTCCCAAAACGTCTTATATTTAGA 57.842 33.333 0.00 0.00 0.00 2.10
567 570 8.395633 CCAACTCCCAAAACGTCTTATATTTAG 58.604 37.037 0.00 0.00 0.00 1.85
568 571 8.102047 TCCAACTCCCAAAACGTCTTATATTTA 58.898 33.333 0.00 0.00 0.00 1.40
569 572 6.943718 TCCAACTCCCAAAACGTCTTATATTT 59.056 34.615 0.00 0.00 0.00 1.40
570 573 6.478129 TCCAACTCCCAAAACGTCTTATATT 58.522 36.000 0.00 0.00 0.00 1.28
571 574 6.057321 TCCAACTCCCAAAACGTCTTATAT 57.943 37.500 0.00 0.00 0.00 0.86
572 575 5.486735 TCCAACTCCCAAAACGTCTTATA 57.513 39.130 0.00 0.00 0.00 0.98
573 576 4.360951 TCCAACTCCCAAAACGTCTTAT 57.639 40.909 0.00 0.00 0.00 1.73
574 577 3.842007 TCCAACTCCCAAAACGTCTTA 57.158 42.857 0.00 0.00 0.00 2.10
575 578 2.721425 TCCAACTCCCAAAACGTCTT 57.279 45.000 0.00 0.00 0.00 3.01
576 579 2.721425 TTCCAACTCCCAAAACGTCT 57.279 45.000 0.00 0.00 0.00 4.18
577 580 3.316868 TCAATTCCAACTCCCAAAACGTC 59.683 43.478 0.00 0.00 0.00 4.34
578 581 3.292460 TCAATTCCAACTCCCAAAACGT 58.708 40.909 0.00 0.00 0.00 3.99
579 582 4.048504 GTTCAATTCCAACTCCCAAAACG 58.951 43.478 0.00 0.00 0.00 3.60
580 583 5.049828 CAGTTCAATTCCAACTCCCAAAAC 58.950 41.667 0.00 0.00 31.40 2.43
581 584 4.442753 GCAGTTCAATTCCAACTCCCAAAA 60.443 41.667 0.00 0.00 31.40 2.44
582 585 3.069443 GCAGTTCAATTCCAACTCCCAAA 59.931 43.478 0.00 0.00 31.40 3.28
583 586 2.627699 GCAGTTCAATTCCAACTCCCAA 59.372 45.455 0.00 0.00 31.40 4.12
584 587 2.238521 GCAGTTCAATTCCAACTCCCA 58.761 47.619 0.00 0.00 31.40 4.37
585 588 1.546029 GGCAGTTCAATTCCAACTCCC 59.454 52.381 0.00 0.00 31.40 4.30
586 589 2.238521 TGGCAGTTCAATTCCAACTCC 58.761 47.619 0.00 3.62 31.40 3.85
587 590 4.320608 TTTGGCAGTTCAATTCCAACTC 57.679 40.909 0.00 0.00 38.21 3.01
588 591 4.441792 GTTTTGGCAGTTCAATTCCAACT 58.558 39.130 0.00 0.00 38.21 3.16
589 592 3.245048 CGTTTTGGCAGTTCAATTCCAAC 59.755 43.478 0.00 0.00 38.21 3.77
590 593 3.118956 ACGTTTTGGCAGTTCAATTCCAA 60.119 39.130 0.00 0.00 36.86 3.53
591 594 2.428890 ACGTTTTGGCAGTTCAATTCCA 59.571 40.909 0.00 0.00 0.00 3.53
592 595 3.049912 GACGTTTTGGCAGTTCAATTCC 58.950 45.455 0.00 0.00 0.00 3.01
593 596 3.964909 AGACGTTTTGGCAGTTCAATTC 58.035 40.909 0.00 0.00 0.00 2.17
594 597 4.385358 AAGACGTTTTGGCAGTTCAATT 57.615 36.364 0.00 0.00 0.00 2.32
595 598 5.705609 ATAAGACGTTTTGGCAGTTCAAT 57.294 34.783 0.83 0.00 0.00 2.57
596 599 6.811253 ATATAAGACGTTTTGGCAGTTCAA 57.189 33.333 0.83 0.00 0.00 2.69
597 600 6.811253 AATATAAGACGTTTTGGCAGTTCA 57.189 33.333 0.83 0.00 0.00 3.18
598 601 7.908601 CCTAAATATAAGACGTTTTGGCAGTTC 59.091 37.037 0.83 0.00 0.00 3.01
599 602 7.608761 TCCTAAATATAAGACGTTTTGGCAGTT 59.391 33.333 0.83 0.00 30.97 3.16
600 603 7.107542 TCCTAAATATAAGACGTTTTGGCAGT 58.892 34.615 0.83 0.00 30.97 4.40
601 604 7.548196 TCCTAAATATAAGACGTTTTGGCAG 57.452 36.000 0.83 0.00 30.97 4.85
602 605 7.390996 TGTTCCTAAATATAAGACGTTTTGGCA 59.609 33.333 0.83 0.00 30.97 4.92
603 606 7.754625 TGTTCCTAAATATAAGACGTTTTGGC 58.245 34.615 0.83 0.00 30.97 4.52
604 607 9.158233 TCTGTTCCTAAATATAAGACGTTTTGG 57.842 33.333 0.83 0.00 0.00 3.28
606 609 9.379791 CCTCTGTTCCTAAATATAAGACGTTTT 57.620 33.333 0.00 0.00 0.00 2.43
607 610 8.537858 ACCTCTGTTCCTAAATATAAGACGTTT 58.462 33.333 0.00 0.00 0.00 3.60
608 611 8.075761 ACCTCTGTTCCTAAATATAAGACGTT 57.924 34.615 0.00 0.00 0.00 3.99
609 612 7.657023 ACCTCTGTTCCTAAATATAAGACGT 57.343 36.000 0.00 0.00 0.00 4.34
610 613 8.848182 ACTACCTCTGTTCCTAAATATAAGACG 58.152 37.037 0.00 0.00 0.00 4.18
626 629 9.417561 TGCATACTAAATTACTACTACCTCTGT 57.582 33.333 0.00 0.00 0.00 3.41
634 637 9.490379 GCCAACTATGCATACTAAATTACTACT 57.510 33.333 1.16 0.00 0.00 2.57
635 638 9.268268 TGCCAACTATGCATACTAAATTACTAC 57.732 33.333 1.16 0.00 32.85 2.73
676 679 6.090783 TCAGTACTACACTATTGCAAGAACG 58.909 40.000 4.94 0.00 34.98 3.95
677 680 7.384115 TGTTCAGTACTACACTATTGCAAGAAC 59.616 37.037 4.94 8.61 34.98 3.01
703 706 6.245408 TGGTGATTATTAAGCTGGAAACTGT 58.755 36.000 0.00 0.00 0.00 3.55
710 713 4.576463 GGTGACTGGTGATTATTAAGCTGG 59.424 45.833 0.00 0.00 0.00 4.85
739 744 1.204146 CCCTGTGCCCTGTACTGTAT 58.796 55.000 0.00 0.00 0.00 2.29
740 745 0.178915 ACCCTGTGCCCTGTACTGTA 60.179 55.000 0.00 0.00 0.00 2.74
752 757 4.579869 AGTAGTGATTTAAGCACCCTGTG 58.420 43.478 9.85 0.00 36.95 3.66
753 758 4.323562 GGAGTAGTGATTTAAGCACCCTGT 60.324 45.833 9.85 0.00 36.95 4.00
799 804 3.627577 ACCATGTGAAGTTGTGAACTGAC 59.372 43.478 0.00 0.00 41.91 3.51
823 828 2.715046 TGCTGGTTGCTCAATCCTAAG 58.285 47.619 0.00 0.00 43.37 2.18
828 833 9.748708 TTATTTAATATTGCTGGTTGCTCAATC 57.251 29.630 0.00 0.00 43.37 2.67
860 865 2.429058 CTGCTGGCTGGTGTCTGT 59.571 61.111 0.00 0.00 0.00 3.41
861 866 3.054503 GCTGCTGGCTGGTGTCTG 61.055 66.667 0.00 0.00 38.06 3.51
907 912 0.749091 AAAGCTGCACAGTCACTGCA 60.749 50.000 4.13 0.00 42.42 4.41
908 913 1.229428 TAAAGCTGCACAGTCACTGC 58.771 50.000 4.13 0.00 34.37 4.40
909 914 3.251729 ACAATAAAGCTGCACAGTCACTG 59.748 43.478 2.22 2.22 37.52 3.66
911 916 3.558505 CACAATAAAGCTGCACAGTCAC 58.441 45.455 1.02 0.00 0.00 3.67
912 917 2.553602 CCACAATAAAGCTGCACAGTCA 59.446 45.455 1.02 0.00 0.00 3.41
914 919 1.888512 CCCACAATAAAGCTGCACAGT 59.111 47.619 1.02 0.00 0.00 3.55
915 920 1.403249 GCCCACAATAAAGCTGCACAG 60.403 52.381 1.02 0.00 0.00 3.66
916 921 0.602562 GCCCACAATAAAGCTGCACA 59.397 50.000 1.02 0.00 0.00 4.57
917 922 0.108662 GGCCCACAATAAAGCTGCAC 60.109 55.000 1.02 0.00 0.00 4.57
918 923 1.594194 CGGCCCACAATAAAGCTGCA 61.594 55.000 1.02 0.00 0.00 4.41
919 924 1.139520 CGGCCCACAATAAAGCTGC 59.860 57.895 0.00 0.00 0.00 5.25
920 925 0.679640 TCCGGCCCACAATAAAGCTG 60.680 55.000 0.00 0.00 0.00 4.24
921 926 0.394352 CTCCGGCCCACAATAAAGCT 60.394 55.000 0.00 0.00 0.00 3.74
922 927 2.004808 GCTCCGGCCCACAATAAAGC 62.005 60.000 0.00 0.00 0.00 3.51
924 929 4.329831 GCTCCGGCCCACAATAAA 57.670 55.556 0.00 0.00 0.00 1.40
936 943 1.006102 AGTGACAAAGACGGCTCCG 60.006 57.895 6.79 6.79 46.03 4.63
954 961 3.077695 AGGGAAGGTGAACTCTTCTAGGA 59.922 47.826 0.00 0.00 40.17 2.94
958 965 3.592865 AGAAGGGAAGGTGAACTCTTCT 58.407 45.455 0.00 0.00 40.17 2.85
959 966 4.359434 AAGAAGGGAAGGTGAACTCTTC 57.641 45.455 0.00 0.00 39.73 2.87
985 992 5.062683 CACACTCCATTATCGTCTGACAAAG 59.937 44.000 8.73 0.00 0.00 2.77
986 993 4.929211 CACACTCCATTATCGTCTGACAAA 59.071 41.667 8.73 0.00 0.00 2.83
998 1005 1.675714 CCTTCGCTGCACACTCCATTA 60.676 52.381 0.00 0.00 0.00 1.90
1011 1018 0.760945 CCTCCACTATCCCCTTCGCT 60.761 60.000 0.00 0.00 0.00 4.93
1016 1023 1.255033 TGGATCCTCCACTATCCCCT 58.745 55.000 14.23 0.00 42.67 4.79
1168 1175 1.308998 CACTCGAACTTGCAAACCCT 58.691 50.000 0.00 0.00 0.00 4.34
1169 1176 0.310854 CCACTCGAACTTGCAAACCC 59.689 55.000 0.00 0.00 0.00 4.11
1172 1179 1.021202 CACCCACTCGAACTTGCAAA 58.979 50.000 0.00 0.00 0.00 3.68
1179 1186 0.458716 GCTAGAGCACCCACTCGAAC 60.459 60.000 0.00 0.00 41.77 3.95
1210 1217 3.118149 TCAGAGTGCTAATGACATGCCAT 60.118 43.478 0.00 0.00 0.00 4.40
1333 1341 8.598916 TGTAGTACATTCCTCAATCTAAAACCA 58.401 33.333 0.00 0.00 0.00 3.67
1404 1413 3.498481 CCTCCAAGAATCAAGTGAACCCA 60.498 47.826 0.00 0.00 0.00 4.51
1432 1441 7.069578 ACGATGTAACTCAATCCTAATGTACCT 59.930 37.037 0.00 0.00 0.00 3.08
1504 1513 1.228367 ATGCCTGATGATTCCCGCC 60.228 57.895 0.00 0.00 0.00 6.13
1506 1515 1.520494 CTGATGCCTGATGATTCCCG 58.480 55.000 0.00 0.00 0.00 5.14
1549 1558 8.499514 TTTCAAAATGCAAAGTGAACAAAAAC 57.500 26.923 8.36 0.00 30.00 2.43
1647 1656 2.688446 GCATAGCCTACCAACCCTTTTC 59.312 50.000 0.00 0.00 0.00 2.29
1649 1658 1.638589 TGCATAGCCTACCAACCCTTT 59.361 47.619 0.00 0.00 0.00 3.11
1676 1685 5.048846 TCAAATAGCCCTCCATTTCTACC 57.951 43.478 0.00 0.00 0.00 3.18
1681 1690 5.776358 TGGTTATCAAATAGCCCTCCATTT 58.224 37.500 0.00 0.00 35.47 2.32
1756 1768 0.179468 TACATGGCCCCTAAAGTCGC 59.821 55.000 0.00 0.00 0.00 5.19
1767 1779 1.068588 TGTCGATAGTGCTACATGGCC 59.931 52.381 0.00 0.00 37.40 5.36
2009 2021 2.826488 AGACAGGAAGTACCAGAGCAT 58.174 47.619 0.00 0.00 42.04 3.79
2055 2071 8.610896 CAGGCACAAGAAAAATGAAAAATTACA 58.389 29.630 0.00 0.00 0.00 2.41
2270 2294 6.128007 CCAAAAATAAGCACCTCATACTTCGT 60.128 38.462 0.00 0.00 0.00 3.85
2335 2359 0.754217 ATCTGGGCCACACATGCATC 60.754 55.000 0.00 0.00 0.00 3.91
2483 2507 2.688507 TCAGTTGTTCGGCTGATCTTC 58.311 47.619 0.00 0.00 36.89 2.87
2487 2511 3.126001 TCTTTCAGTTGTTCGGCTGAT 57.874 42.857 0.00 0.00 40.83 2.90
2689 2713 6.885922 AGACTTAACTAATAGCGTTCCCAAT 58.114 36.000 0.00 0.00 0.00 3.16
2737 2761 5.104900 GCTTAATAGGAGAAGTGAGTTCCCA 60.105 44.000 9.28 0.00 35.51 4.37
2753 2778 6.631016 TGCTCCGACCATAATAGCTTAATAG 58.369 40.000 0.00 0.00 34.28 1.73
2833 2858 0.817654 TCACTACCATCAGCCAGTCG 59.182 55.000 0.00 0.00 0.00 4.18
2869 2894 9.403583 ACAAGACTCTATAAAACAACTTCCAAA 57.596 29.630 0.00 0.00 0.00 3.28
2880 2906 9.996554 TGAAGATGAACACAAGACTCTATAAAA 57.003 29.630 0.00 0.00 0.00 1.52
3078 3148 5.012046 TGACCAGAAAAAGAGAGCATGTAGA 59.988 40.000 0.00 0.00 0.00 2.59
3079 3149 5.240891 TGACCAGAAAAAGAGAGCATGTAG 58.759 41.667 0.00 0.00 0.00 2.74
3080 3150 5.227569 TGACCAGAAAAAGAGAGCATGTA 57.772 39.130 0.00 0.00 0.00 2.29
3081 3151 4.090761 TGACCAGAAAAAGAGAGCATGT 57.909 40.909 0.00 0.00 0.00 3.21
3082 3152 5.640189 AATGACCAGAAAAAGAGAGCATG 57.360 39.130 0.00 0.00 0.00 4.06
3083 3153 5.884792 CCTAATGACCAGAAAAAGAGAGCAT 59.115 40.000 0.00 0.00 0.00 3.79
3084 3154 5.013079 TCCTAATGACCAGAAAAAGAGAGCA 59.987 40.000 0.00 0.00 0.00 4.26
3085 3155 5.491982 TCCTAATGACCAGAAAAAGAGAGC 58.508 41.667 0.00 0.00 0.00 4.09
3086 3156 7.826252 TGATTCCTAATGACCAGAAAAAGAGAG 59.174 37.037 0.00 0.00 0.00 3.20
3087 3157 7.689299 TGATTCCTAATGACCAGAAAAAGAGA 58.311 34.615 0.00 0.00 0.00 3.10
3088 3158 7.609532 ACTGATTCCTAATGACCAGAAAAAGAG 59.390 37.037 0.00 0.00 0.00 2.85
3089 3159 7.461749 ACTGATTCCTAATGACCAGAAAAAGA 58.538 34.615 0.00 0.00 0.00 2.52
3090 3160 7.609532 AGACTGATTCCTAATGACCAGAAAAAG 59.390 37.037 0.00 0.00 0.00 2.27
3091 3161 7.461749 AGACTGATTCCTAATGACCAGAAAAA 58.538 34.615 0.00 0.00 0.00 1.94
3092 3162 7.020827 AGACTGATTCCTAATGACCAGAAAA 57.979 36.000 0.00 0.00 0.00 2.29
3093 3163 6.627087 AGACTGATTCCTAATGACCAGAAA 57.373 37.500 0.00 0.00 0.00 2.52
3094 3164 6.213397 TGAAGACTGATTCCTAATGACCAGAA 59.787 38.462 0.00 0.00 0.00 3.02
3095 3165 5.721480 TGAAGACTGATTCCTAATGACCAGA 59.279 40.000 0.00 0.00 0.00 3.86
3096 3166 5.814705 GTGAAGACTGATTCCTAATGACCAG 59.185 44.000 0.00 0.00 0.00 4.00
3097 3167 5.338381 GGTGAAGACTGATTCCTAATGACCA 60.338 44.000 0.00 0.00 0.00 4.02
3098 3168 5.119694 GGTGAAGACTGATTCCTAATGACC 58.880 45.833 0.00 0.00 0.00 4.02
3099 3169 5.734720 TGGTGAAGACTGATTCCTAATGAC 58.265 41.667 0.00 0.00 0.00 3.06
3100 3170 6.566079 ATGGTGAAGACTGATTCCTAATGA 57.434 37.500 0.00 0.00 0.00 2.57
3101 3171 7.201767 GGAAATGGTGAAGACTGATTCCTAATG 60.202 40.741 0.00 0.00 0.00 1.90
3102 3172 6.830838 GGAAATGGTGAAGACTGATTCCTAAT 59.169 38.462 0.00 0.00 0.00 1.73
3103 3173 6.180472 GGAAATGGTGAAGACTGATTCCTAA 58.820 40.000 0.00 0.00 0.00 2.69
3104 3174 5.250543 TGGAAATGGTGAAGACTGATTCCTA 59.749 40.000 0.00 0.00 0.00 2.94
3105 3175 4.043310 TGGAAATGGTGAAGACTGATTCCT 59.957 41.667 0.00 0.00 0.00 3.36
3106 3176 4.335416 TGGAAATGGTGAAGACTGATTCC 58.665 43.478 0.00 0.00 0.00 3.01
3107 3177 5.416952 ACATGGAAATGGTGAAGACTGATTC 59.583 40.000 0.00 0.00 0.00 2.52
3108 3178 5.184479 CACATGGAAATGGTGAAGACTGATT 59.816 40.000 0.00 0.00 34.52 2.57
3109 3179 4.703575 CACATGGAAATGGTGAAGACTGAT 59.296 41.667 0.00 0.00 34.52 2.90
3110 3180 4.074259 CACATGGAAATGGTGAAGACTGA 58.926 43.478 0.00 0.00 34.52 3.41
3111 3181 3.192001 CCACATGGAAATGGTGAAGACTG 59.808 47.826 0.00 0.00 37.39 3.51
3112 3182 3.424703 CCACATGGAAATGGTGAAGACT 58.575 45.455 0.00 0.00 37.39 3.24
3113 3183 2.493278 CCCACATGGAAATGGTGAAGAC 59.507 50.000 0.00 0.00 37.39 3.01
3114 3184 2.109834 ACCCACATGGAAATGGTGAAGA 59.890 45.455 0.00 0.00 37.39 2.87
3115 3185 2.528564 ACCCACATGGAAATGGTGAAG 58.471 47.619 0.00 0.00 37.39 3.02
3116 3186 2.692709 ACCCACATGGAAATGGTGAA 57.307 45.000 0.00 0.00 37.39 3.18
3117 3187 5.458451 TTATACCCACATGGAAATGGTGA 57.542 39.130 0.00 0.00 37.39 4.02
3126 3196 5.528690 CACTGAGACATTTATACCCACATGG 59.471 44.000 0.00 0.00 41.37 3.66
3527 3599 6.933514 AAACCATGTCACTTATTTTGGGAT 57.066 33.333 0.00 0.00 0.00 3.85
3528 3600 6.739331 AAAACCATGTCACTTATTTTGGGA 57.261 33.333 0.00 0.00 0.00 4.37
3595 3667 8.993424 AGTGACAGGATATTTAAAGAGTACCAT 58.007 33.333 0.00 0.00 0.00 3.55
3618 3690 4.132336 CCCACCAGATGACATAATGAGTG 58.868 47.826 2.40 7.70 0.00 3.51
3674 3746 9.838339 CTCCTAATATGTTCAAACAGAATACCT 57.162 33.333 1.69 0.00 43.04 3.08
3766 3838 4.681025 GCAGTGGATGTGTTTTTGTGTATG 59.319 41.667 0.00 0.00 0.00 2.39
3800 3872 7.110155 CCCACAAACAGTAACCAGAATAGTAT 58.890 38.462 0.00 0.00 0.00 2.12
3811 3883 4.426416 GGTTCAAACCCACAAACAGTAAC 58.574 43.478 0.10 0.00 43.43 2.50
3812 3884 4.722361 GGTTCAAACCCACAAACAGTAA 57.278 40.909 0.10 0.00 43.43 2.24
3887 3959 6.149633 GGTACACCTTATTTTGTTTCTGCAG 58.850 40.000 7.63 7.63 0.00 4.41
3906 3978 6.244654 TCCATTCACATGAGAATTTGGTACA 58.755 36.000 18.98 4.29 36.13 2.90
3977 4049 7.277981 CCTTTCGCACATATCCTATATACAACC 59.722 40.741 0.00 0.00 0.00 3.77
4043 4115 5.886960 AGACATTCCAAGTTTCATGCTAC 57.113 39.130 0.00 0.00 0.00 3.58
4229 4301 2.890311 TGCACAGTAAGACAAAATGGGG 59.110 45.455 0.00 0.00 0.00 4.96
4401 4473 3.023119 ACTCTACATGTCAGAGAGCTGG 58.977 50.000 25.93 8.57 41.80 4.85
4412 4484 1.741706 GCATGCAAGCACTCTACATGT 59.258 47.619 14.21 2.69 38.38 3.21
4639 4712 9.872684 ATGAAACAAATGATAATACCAGGAGAT 57.127 29.630 0.00 0.00 0.00 2.75
4673 4746 2.031120 CCAATACAATGTGGGGCGAAT 58.969 47.619 0.00 0.00 0.00 3.34
4678 7386 4.082845 TGTACAACCAATACAATGTGGGG 58.917 43.478 0.00 0.00 39.39 4.96
4856 7573 3.323979 TGCTTTTACGGAAGAGAAGGAGT 59.676 43.478 1.25 0.00 0.00 3.85
4857 7574 3.926616 TGCTTTTACGGAAGAGAAGGAG 58.073 45.455 1.25 0.00 0.00 3.69
4858 7575 4.039973 TCTTGCTTTTACGGAAGAGAAGGA 59.960 41.667 1.25 0.00 36.60 3.36
4859 7576 4.315803 TCTTGCTTTTACGGAAGAGAAGG 58.684 43.478 1.25 0.00 36.60 3.46
4870 7588 8.110002 CACTGTGAATTTTGTTCTTGCTTTTAC 58.890 33.333 0.32 0.00 0.00 2.01
4916 7634 6.991485 ACACTATTTGCATTCAAAGTTTCG 57.009 33.333 0.00 0.00 44.47 3.46
4957 7683 7.690228 TGATTGTTGTGTTGTTGAGTAGTAAC 58.310 34.615 0.00 0.00 0.00 2.50
4997 7723 5.852827 AGTTGTGGTAAAATTGGAACCATG 58.147 37.500 9.34 0.00 44.69 3.66
5021 7747 9.693739 TTAAACAAAGATATTTCTCCTATGGCA 57.306 29.630 0.00 0.00 0.00 4.92
5075 7801 0.316204 AGCAAAACATCAGTGCCTGC 59.684 50.000 0.00 0.00 39.13 4.85
5143 7869 1.383456 AACACCGCAAGCTGAAGCAA 61.383 50.000 4.90 0.00 45.16 3.91
5239 7965 2.029838 AAATCAGCTTCGGTGGCTAG 57.970 50.000 0.00 0.00 38.03 3.42
5359 8087 5.700373 GGAGGCAGATTTCTATTTAGCTCTG 59.300 44.000 0.00 0.00 34.61 3.35
5420 8148 7.454225 CCCCTAAATTATTTCCAGAGTCTAGG 58.546 42.308 0.00 0.00 0.00 3.02
5477 8205 3.720818 GCACAAACGAATAATGCGATCAG 59.279 43.478 0.00 0.00 0.00 2.90
5540 8275 3.213506 TGCACACAAGCAAGACAGTTAT 58.786 40.909 0.00 0.00 42.46 1.89
5563 8298 5.414789 TGTGAATAGATTTCGAGGTTGGA 57.585 39.130 0.00 0.00 0.00 3.53
5584 8319 6.994496 TGAAAGATTGTTCTCCCATATAGCTG 59.006 38.462 0.00 0.00 0.00 4.24
5585 8320 6.995091 GTGAAAGATTGTTCTCCCATATAGCT 59.005 38.462 0.00 0.00 0.00 3.32
5667 8530 7.827701 TCTATGGACGTCATCATACTATTTCC 58.172 38.462 18.91 0.00 37.30 3.13
5707 8570 7.752686 GCCTCATCTTCTGCTTTAAGTTAAAAG 59.247 37.037 9.28 5.35 39.10 2.27
5718 8581 6.183360 GGAATTTAATGCCTCATCTTCTGCTT 60.183 38.462 0.00 0.00 0.00 3.91
5742 8605 9.331282 CTACCTCAACCTTATTGATCTTAAAGG 57.669 37.037 14.98 14.98 43.42 3.11
5855 8719 0.179023 TCACATGCTGGCACACTTGA 60.179 50.000 0.00 0.00 0.00 3.02
5887 8756 1.063942 CCATTTTAGGTCCCAGGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
5888 8757 1.063942 CCCATTTTAGGTCCCAGGTCC 60.064 57.143 0.00 0.00 0.00 4.46
5889 8758 1.639108 ACCCATTTTAGGTCCCAGGTC 59.361 52.381 0.00 0.00 28.99 3.85
5890 8759 1.357761 CACCCATTTTAGGTCCCAGGT 59.642 52.381 0.00 0.00 34.56 4.00
5891 8760 1.959989 GCACCCATTTTAGGTCCCAGG 60.960 57.143 0.00 0.00 34.56 4.45
5892 8761 1.474330 GCACCCATTTTAGGTCCCAG 58.526 55.000 0.00 0.00 34.56 4.45
5893 8762 0.040499 GGCACCCATTTTAGGTCCCA 59.960 55.000 0.00 0.00 35.04 4.37
5894 8763 1.035385 CGGCACCCATTTTAGGTCCC 61.035 60.000 0.00 0.00 34.56 4.46
5913 8782 3.209410 CTGCCCAGAATCCTTATCACAC 58.791 50.000 0.00 0.00 0.00 3.82
6000 8869 2.752238 AGAGGAGAGGTCACGGCG 60.752 66.667 4.80 4.80 0.00 6.46
6045 8914 2.241160 ACTTGCAATGCAACAGATGGA 58.759 42.857 17.55 0.00 43.99 3.41
6046 8915 2.736144 ACTTGCAATGCAACAGATGG 57.264 45.000 17.55 8.76 43.99 3.51
6099 8968 4.371786 TCGATATGAGTCAACTGGCAATC 58.628 43.478 0.00 0.00 0.00 2.67
6103 8972 5.741388 AAATTCGATATGAGTCAACTGGC 57.259 39.130 0.00 0.00 0.00 4.85
6160 9029 9.935241 CACTATCAAACATATGAAGGCTAGTAT 57.065 33.333 10.38 0.00 32.06 2.12
6176 9045 9.871238 TCTACAAGATTTCTACCACTATCAAAC 57.129 33.333 0.00 0.00 0.00 2.93
6307 9177 6.157994 AGAGCAGGTACTCCAAACCAATTATA 59.842 38.462 0.00 0.00 39.64 0.98
6408 9278 0.983467 TACAATGGCAGCTCTCACCA 59.017 50.000 0.00 0.00 37.99 4.17
6464 9334 5.711976 CCTTTCCATATTTTCAGTGTCACCT 59.288 40.000 0.00 0.00 0.00 4.00
6476 9346 9.163894 TCTCATGATAGAGTCCTTTCCATATTT 57.836 33.333 0.00 0.00 36.97 1.40
6558 9428 3.888930 TGACAGGGAACTTCACATTTTCC 59.111 43.478 0.00 0.00 40.21 3.13
6559 9429 4.580580 ACTGACAGGGAACTTCACATTTTC 59.419 41.667 7.51 0.00 40.21 2.29
6560 9430 4.536765 ACTGACAGGGAACTTCACATTTT 58.463 39.130 7.51 0.00 40.21 1.82
6561 9431 4.170468 ACTGACAGGGAACTTCACATTT 57.830 40.909 7.51 0.00 40.21 2.32
6562 9432 3.864789 ACTGACAGGGAACTTCACATT 57.135 42.857 7.51 0.00 40.21 2.71
6793 9663 3.464828 AGGAGGGAGGATACAACAACAT 58.535 45.455 0.00 0.00 41.41 2.71
6799 9669 4.175962 AGACAAAAGGAGGGAGGATACAA 58.824 43.478 0.00 0.00 41.41 2.41
6905 9775 4.648651 TCCATGAATCATGTAGCTGATGG 58.351 43.478 20.39 5.07 39.94 3.51
6950 9839 6.179906 ACAAATATAGCTGAGGCAGTGTAT 57.820 37.500 0.00 0.00 41.70 2.29
6985 9874 9.651718 GATAATTAGCACCGACTTCTTAAAATG 57.348 33.333 0.00 0.00 0.00 2.32
6993 9884 7.016361 ACAAATGATAATTAGCACCGACTTC 57.984 36.000 5.38 0.00 0.00 3.01
7050 9941 5.185828 GGTAAAGATTGCAGGAACTCCAATT 59.814 40.000 0.00 0.00 34.60 2.32
7074 9965 1.942585 CAGCTTCTTCGCAAAAGTCG 58.057 50.000 0.00 0.00 0.00 4.18
7131 10022 3.339093 GGGAGTCCCAGGGGTTGG 61.339 72.222 24.35 0.00 44.65 3.77
7157 10048 9.416794 AGATAACGAAAGACTGAGCATATATTG 57.583 33.333 0.00 0.00 0.00 1.90
7158 10049 9.632807 GAGATAACGAAAGACTGAGCATATATT 57.367 33.333 0.00 0.00 0.00 1.28
7169 10060 5.992217 ACAGCAAAAGAGATAACGAAAGACT 59.008 36.000 0.00 0.00 0.00 3.24
7208 10099 2.766313 TGAAGGTGTCAGTTTGATCGG 58.234 47.619 0.00 0.00 0.00 4.18
7210 10101 5.879223 AGATGATGAAGGTGTCAGTTTGATC 59.121 40.000 0.00 0.00 40.43 2.92
7219 10110 5.879223 AGAAATGACAGATGATGAAGGTGTC 59.121 40.000 0.00 0.00 38.41 3.67
7283 10174 5.515797 TGTATAGCGCACTATTGTTCTCT 57.484 39.130 11.47 0.00 39.81 3.10
7371 10263 9.599866 ACATATGAACGTCTGAATATTTTCTGA 57.400 29.630 10.38 2.15 37.45 3.27
7387 10279 4.944048 TGTCATACCTCCACATATGAACG 58.056 43.478 10.38 0.00 39.04 3.95
7393 10285 7.432148 AGTTACATTGTCATACCTCCACATA 57.568 36.000 0.00 0.00 0.00 2.29
7394 10286 6.313519 AGTTACATTGTCATACCTCCACAT 57.686 37.500 0.00 0.00 0.00 3.21
7395 10287 5.755409 AGTTACATTGTCATACCTCCACA 57.245 39.130 0.00 0.00 0.00 4.17
7440 10335 9.733556 TCATCCATGTAAAACATAGTTTGTACT 57.266 29.630 0.00 0.00 36.53 2.73
7471 10366 1.766496 AGACCGGAAACAACCAAGAGA 59.234 47.619 9.46 0.00 0.00 3.10
7490 10385 5.108292 CGCACATGTTTTTGAACACATACAG 60.108 40.000 0.00 0.00 35.22 2.74
7503 10398 4.615949 TGCATCTTAAACGCACATGTTTT 58.384 34.783 0.00 0.00 41.92 2.43
7532 10427 3.187700 GAGGCGTACGAACTGATGATTT 58.812 45.455 21.65 0.00 0.00 2.17
7550 10445 1.151450 AACTGCACCAACAGGGAGG 59.849 57.895 0.00 0.00 42.21 4.30
7551 10446 0.466189 ACAACTGCACCAACAGGGAG 60.466 55.000 0.00 0.00 42.21 4.30
7552 10447 0.751277 CACAACTGCACCAACAGGGA 60.751 55.000 0.00 0.00 42.21 4.20
7630 10526 3.627577 CACTAGCATTACCACATTCCCAC 59.372 47.826 0.00 0.00 0.00 4.61
7648 10544 4.022676 TGAACTGACTCGTATGCAACACTA 60.023 41.667 0.00 0.00 0.00 2.74
7650 10546 3.057019 TGAACTGACTCGTATGCAACAC 58.943 45.455 0.00 0.00 0.00 3.32
7659 10555 1.686587 TCACCACATGAACTGACTCGT 59.313 47.619 0.00 0.00 33.02 4.18
7661 10557 3.686726 GGAATCACCACATGAACTGACTC 59.313 47.826 0.00 0.00 41.93 3.36
7666 10562 3.328931 ACAGAGGAATCACCACATGAACT 59.671 43.478 0.00 0.00 41.93 3.01
7690 10586 7.867445 ACTAAATTGCCGAAATTTGTTGTAG 57.133 32.000 15.10 8.96 45.89 2.74
7707 10603 6.323996 GCCAGGGCCTTCTAAATAACTAAATT 59.676 38.462 1.32 0.00 34.56 1.82
7708 10604 5.833667 GCCAGGGCCTTCTAAATAACTAAAT 59.166 40.000 1.32 0.00 34.56 1.40
7732 10628 1.465777 TGAGCACATCAGAATGCAACG 59.534 47.619 11.58 0.00 44.59 4.10
7769 10676 8.352942 GTTTCCACATTAATTCAAGTCAGTTCT 58.647 33.333 0.00 0.00 0.00 3.01
7802 10709 3.764885 ACGGCATAGACAAAAAGCATC 57.235 42.857 0.00 0.00 0.00 3.91
7806 10713 4.151689 TCGAAGAACGGCATAGACAAAAAG 59.848 41.667 0.00 0.00 42.82 2.27
7839 10746 5.362430 TGTAACTTCAAAAATTGCCTGAGGT 59.638 36.000 0.00 0.00 31.41 3.85
7896 10803 4.518590 TCATCATTCATCAAACACCGTGTT 59.481 37.500 11.24 11.24 43.41 3.32
7933 10840 2.542178 CGACAAGTTCGTTGGATTGTGA 59.458 45.455 0.00 0.00 43.24 3.58
7950 10857 3.195610 ACTTATCAGAGGCATTGTCGACA 59.804 43.478 15.76 15.76 0.00 4.35
7960 10867 3.633065 ACGTCCTTCTACTTATCAGAGGC 59.367 47.826 0.00 0.00 0.00 4.70
8003 10910 1.077068 TTTGATGGGGGTCGATGCC 60.077 57.895 0.00 0.00 0.00 4.40
8049 10956 2.703007 GGTCCTGTGCCTAGATGATCTT 59.297 50.000 0.00 0.00 0.00 2.40
8069 10976 1.609072 CTGGATCAAGCAGCATCATGG 59.391 52.381 0.00 0.00 0.00 3.66
8100 11007 1.414181 TGTATGCCTAGCTGCCTCTTC 59.586 52.381 0.00 0.00 0.00 2.87
8101 11008 1.500474 TGTATGCCTAGCTGCCTCTT 58.500 50.000 0.00 0.00 0.00 2.85
8150 11057 3.972950 ATACTCGAGAGATCAACACGG 57.027 47.619 21.68 0.00 40.84 4.94
8151 11058 6.229561 TGATATACTCGAGAGATCAACACG 57.770 41.667 21.68 0.00 40.84 4.49
8172 11079 7.523293 TCTTTAATGGTTTTGATCAGCTTGA 57.477 32.000 0.00 0.00 0.00 3.02
8195 11102 5.784578 AACGGCCCCTTTATCATTAATTC 57.215 39.130 0.00 0.00 0.00 2.17
8228 11135 3.775316 AGGAACGGATGGAGTAGATTGTT 59.225 43.478 0.00 0.00 0.00 2.83
8231 11138 6.749036 ATTTAGGAACGGATGGAGTAGATT 57.251 37.500 0.00 0.00 0.00 2.40
8237 11144 6.542370 ACACAAATATTTAGGAACGGATGGAG 59.458 38.462 0.00 0.00 0.00 3.86
8238 11145 6.419791 ACACAAATATTTAGGAACGGATGGA 58.580 36.000 0.00 0.00 0.00 3.41
8239 11146 6.693315 ACACAAATATTTAGGAACGGATGG 57.307 37.500 0.00 0.00 0.00 3.51
8240 11147 8.458843 AGAAACACAAATATTTAGGAACGGATG 58.541 33.333 0.00 0.00 0.00 3.51
8241 11148 8.575649 AGAAACACAAATATTTAGGAACGGAT 57.424 30.769 0.00 0.00 0.00 4.18
8242 11149 7.989416 AGAAACACAAATATTTAGGAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
8243 11150 9.158233 TCTAGAAACACAAATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
8255 11162 9.956720 CTTGTTGAAATCTCTAGAAACACAAAT 57.043 29.630 5.17 0.00 0.00 2.32
8256 11163 8.956426 ACTTGTTGAAATCTCTAGAAACACAAA 58.044 29.630 5.17 0.00 0.00 2.83
8257 11164 8.397906 CACTTGTTGAAATCTCTAGAAACACAA 58.602 33.333 5.17 1.33 0.00 3.33
8258 11165 7.768582 TCACTTGTTGAAATCTCTAGAAACACA 59.231 33.333 5.17 0.00 0.00 3.72
8259 11166 8.064814 GTCACTTGTTGAAATCTCTAGAAACAC 58.935 37.037 5.17 0.00 35.39 3.32
8260 11167 7.987458 AGTCACTTGTTGAAATCTCTAGAAACA 59.013 33.333 2.06 2.06 35.39 2.83
8261 11168 8.371770 AGTCACTTGTTGAAATCTCTAGAAAC 57.628 34.615 0.00 0.00 35.39 2.78
8262 11169 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
8263 11170 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
8264 11171 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
8265 11172 8.867935 CATGTAGTCACTTGTTGAAATCTCTAG 58.132 37.037 0.00 0.00 35.39 2.43
8266 11173 7.331934 GCATGTAGTCACTTGTTGAAATCTCTA 59.668 37.037 0.00 0.00 35.39 2.43
8267 11174 6.148480 GCATGTAGTCACTTGTTGAAATCTCT 59.852 38.462 0.00 0.00 35.39 3.10
8268 11175 6.310197 GCATGTAGTCACTTGTTGAAATCTC 58.690 40.000 0.00 0.00 35.39 2.75
8269 11176 5.106948 CGCATGTAGTCACTTGTTGAAATCT 60.107 40.000 0.00 0.00 35.39 2.40
8270 11177 5.082059 CGCATGTAGTCACTTGTTGAAATC 58.918 41.667 0.00 0.00 35.39 2.17
8271 11178 4.083324 CCGCATGTAGTCACTTGTTGAAAT 60.083 41.667 0.00 0.00 35.39 2.17
8272 11179 3.249799 CCGCATGTAGTCACTTGTTGAAA 59.750 43.478 0.00 0.00 35.39 2.69
8273 11180 2.805671 CCGCATGTAGTCACTTGTTGAA 59.194 45.455 0.00 0.00 35.39 2.69
8274 11181 2.036604 TCCGCATGTAGTCACTTGTTGA 59.963 45.455 0.00 0.00 33.46 3.18
8275 11182 2.412870 TCCGCATGTAGTCACTTGTTG 58.587 47.619 0.00 0.00 33.46 3.33
8276 11183 2.688507 CTCCGCATGTAGTCACTTGTT 58.311 47.619 0.00 0.00 33.46 2.83
8277 11184 1.673033 GCTCCGCATGTAGTCACTTGT 60.673 52.381 0.00 0.00 33.46 3.16
8278 11185 1.002366 GCTCCGCATGTAGTCACTTG 58.998 55.000 0.00 0.00 33.92 3.16
8279 11186 0.608130 TGCTCCGCATGTAGTCACTT 59.392 50.000 0.00 0.00 31.71 3.16
8280 11187 0.608130 TTGCTCCGCATGTAGTCACT 59.392 50.000 0.00 0.00 38.76 3.41
8281 11188 1.438651 TTTGCTCCGCATGTAGTCAC 58.561 50.000 0.00 0.00 38.76 3.67
8282 11189 2.177394 TTTTGCTCCGCATGTAGTCA 57.823 45.000 0.00 0.00 38.76 3.41
8283 11190 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
8284 11191 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
8285 11192 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
8286 11193 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
8287 11194 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
8288 11195 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
8289 11196 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
8290 11197 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
8291 11198 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
8292 11199 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
8293 11200 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
8294 11201 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.