Multiple sequence alignment - TraesCS5D01G530900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G530900 chr5D 100.000 6178 0 0 1 6178 546826252 546820075 0.000000e+00 11409.0
1 TraesCS5D01G530900 chr5D 76.667 450 37 27 987 1432 546682632 546683017 2.940000e-43 187.0
2 TraesCS5D01G530900 chr5D 100.000 33 0 0 4807 4839 164651441 164651473 1.860000e-05 62.1
3 TraesCS5D01G530900 chr5D 92.500 40 2 1 4800 4839 300427492 300427530 8.650000e-04 56.5
4 TraesCS5D01G530900 chr5B 94.811 3064 104 20 1 3028 689900089 689903133 0.000000e+00 4726.0
5 TraesCS5D01G530900 chr5B 96.291 1510 27 8 2929 4430 689903133 689904621 0.000000e+00 2451.0
6 TraesCS5D01G530900 chr5B 87.986 1673 130 34 4415 6039 689904637 689906286 0.000000e+00 1910.0
7 TraesCS5D01G530900 chr5B 96.809 94 2 1 6086 6178 689906371 689906464 8.290000e-34 156.0
8 TraesCS5D01G530900 chr4A 91.380 2645 136 44 1 2575 622174616 622177238 0.000000e+00 3537.0
9 TraesCS5D01G530900 chr4A 92.011 1890 79 23 2577 4430 622177285 622179138 0.000000e+00 2588.0
10 TraesCS5D01G530900 chr4A 89.593 1057 76 20 4415 5461 622179157 622180189 0.000000e+00 1312.0
11 TraesCS5D01G530900 chr4A 84.579 214 18 3 1318 1531 622246097 622245899 1.360000e-46 198.0
12 TraesCS5D01G530900 chr4A 81.961 255 15 17 987 1237 622248237 622248010 2.940000e-43 187.0
13 TraesCS5D01G530900 chr3A 88.701 177 18 2 3207 3381 729155898 729155722 1.350000e-51 215.0
14 TraesCS5D01G530900 chr7D 77.341 331 51 10 3195 3522 12307156 12307465 2.290000e-39 174.0
15 TraesCS5D01G530900 chr7A 77.410 332 50 11 3195 3522 11756326 11756636 2.290000e-39 174.0
16 TraesCS5D01G530900 chr6D 93.750 48 3 0 4792 4839 142149660 142149707 8.590000e-09 73.1
17 TraesCS5D01G530900 chr6D 83.582 67 11 0 4791 4857 462404459 462404393 5.170000e-06 63.9
18 TraesCS5D01G530900 chr6D 85.965 57 8 0 4791 4847 452076802 452076746 1.860000e-05 62.1
19 TraesCS5D01G530900 chr5A 100.000 33 0 0 4807 4839 3362218 3362186 1.860000e-05 62.1
20 TraesCS5D01G530900 chr1B 100.000 33 0 0 4807 4839 296290747 296290779 1.860000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G530900 chr5D 546820075 546826252 6177 True 11409.00 11409 100.000000 1 6178 1 chr5D.!!$R1 6177
1 TraesCS5D01G530900 chr5B 689900089 689906464 6375 False 2310.75 4726 93.974250 1 6178 4 chr5B.!!$F1 6177
2 TraesCS5D01G530900 chr4A 622174616 622180189 5573 False 2479.00 3537 90.994667 1 5461 3 chr4A.!!$F1 5460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 892 0.109689 CTTCGGTCCAGTGTCTCGAC 60.110 60.0 0.00 0.0 0.00 4.20 F
2179 2237 0.468214 TGTCCTAGGCATCCTCGGAG 60.468 60.0 2.96 0.0 44.54 4.63 F
3733 3976 0.370273 GCTTGTTGTGGTCGCTATCG 59.630 55.0 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2284 0.744281 CAGTTGCCTGTTTCGGGTTT 59.256 50.000 0.00 0.00 33.80 3.27 R
4034 4277 3.604875 ACTTTATTGGTCGACGGACAT 57.395 42.857 9.92 1.25 45.28 3.06 R
5462 5813 1.279271 GGTTACAGTGGAGAGGCATGT 59.721 52.381 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.863137 GCTCGCCATTTCTTGAGTAGAG 59.137 50.000 0.00 0.00 33.51 2.43
148 149 3.999046 TCATGTAGCCATGTATCTGCAG 58.001 45.455 7.63 7.63 46.99 4.41
232 233 2.933287 TCCCCGCACCACCATCTT 60.933 61.111 0.00 0.00 0.00 2.40
554 555 1.815003 CATGCCCGCGAACATCTCA 60.815 57.895 8.23 0.00 0.00 3.27
689 690 1.599047 CTTCATGAGCCCGTCCAGT 59.401 57.895 0.00 0.00 0.00 4.00
788 798 4.713735 TTGGCGGCCATTGCTCGA 62.714 61.111 24.49 2.26 37.74 4.04
793 803 3.195698 GGCCATTGCTCGACCGTC 61.196 66.667 0.00 0.00 37.74 4.79
812 822 0.329261 CTCCACTCCCATGGCAAAGA 59.671 55.000 6.09 0.00 39.85 2.52
813 823 0.329261 TCCACTCCCATGGCAAAGAG 59.671 55.000 6.09 10.21 39.85 2.85
819 829 1.101331 CCCATGGCAAAGAGAGCTTC 58.899 55.000 6.09 0.00 31.82 3.86
854 866 1.402968 CCAACGAGCTGGAAATGGATG 59.597 52.381 1.44 0.00 38.96 3.51
855 867 1.402968 CAACGAGCTGGAAATGGATGG 59.597 52.381 1.44 0.00 0.00 3.51
856 868 0.911769 ACGAGCTGGAAATGGATGGA 59.088 50.000 1.44 0.00 0.00 3.41
857 869 1.492176 ACGAGCTGGAAATGGATGGAT 59.508 47.619 1.44 0.00 0.00 3.41
865 877 4.136796 TGGAAATGGATGGATAAGCTTCG 58.863 43.478 0.00 0.00 0.00 3.79
867 879 3.864789 AATGGATGGATAAGCTTCGGT 57.135 42.857 0.00 0.00 0.00 4.69
876 888 1.629043 TAAGCTTCGGTCCAGTGTCT 58.371 50.000 0.00 0.00 0.00 3.41
878 890 1.444553 GCTTCGGTCCAGTGTCTCG 60.445 63.158 0.00 0.00 0.00 4.04
880 892 0.109689 CTTCGGTCCAGTGTCTCGAC 60.110 60.000 0.00 0.00 0.00 4.20
888 900 3.371063 GTGTCTCGACTGGGCCGA 61.371 66.667 0.00 0.00 34.61 5.54
895 907 4.400961 GACTGGGCCGAGCTGCTT 62.401 66.667 15.66 0.00 0.00 3.91
898 910 3.315142 CTGGGCCGAGCTGCTTACA 62.315 63.158 2.53 0.00 0.00 2.41
907 919 2.472909 GCTGCTTACATGGGCCGAC 61.473 63.158 0.00 0.00 0.00 4.79
956 968 0.687920 TACACATTGAGGCCCAACGA 59.312 50.000 0.00 0.00 37.63 3.85
1047 1084 3.512223 ATCGATCCTGCCGCAGCTC 62.512 63.158 15.36 12.11 40.80 4.09
1552 1589 2.524306 TCAATTTCGGCTCATTTGGGT 58.476 42.857 0.00 0.00 0.00 4.51
1553 1590 2.230992 TCAATTTCGGCTCATTTGGGTG 59.769 45.455 0.00 0.00 0.00 4.61
1607 1644 9.899226 GTCAAATTGACTAGCTGTTCTTATTTT 57.101 29.630 18.03 0.00 43.73 1.82
1829 1866 1.491668 TGAAATCTAGCGTGCCCCTA 58.508 50.000 0.00 0.00 0.00 3.53
1862 1899 3.142174 GGTAAGTGGCTTCATATGCTCC 58.858 50.000 0.00 0.00 0.00 4.70
2007 2044 2.610833 ACATGATGTGACATAGCTTGCG 59.389 45.455 0.00 0.00 0.00 4.85
2162 2220 7.784550 AGTCATATTTTGGCCTATAACCATTGT 59.215 33.333 3.32 0.00 36.96 2.71
2179 2237 0.468214 TGTCCTAGGCATCCTCGGAG 60.468 60.000 2.96 0.00 44.54 4.63
2182 2240 0.468214 CCTAGGCATCCTCGGAGACA 60.468 60.000 6.58 0.00 38.60 3.41
2219 2277 2.158325 AGACATGTGGGGTCATTTTGGT 60.158 45.455 1.15 0.00 37.74 3.67
2226 2284 3.835395 GTGGGGTCATTTTGGTATTTGGA 59.165 43.478 0.00 0.00 0.00 3.53
2230 2288 5.242434 GGGTCATTTTGGTATTTGGAAACC 58.758 41.667 0.00 0.00 36.24 3.27
2275 2333 3.885484 ACATGAAGTTCAACTTGCTCG 57.115 42.857 7.75 0.00 38.80 5.03
2277 2335 4.377021 ACATGAAGTTCAACTTGCTCGTA 58.623 39.130 7.75 0.00 38.80 3.43
2281 2339 4.980434 TGAAGTTCAACTTGCTCGTAGTAC 59.020 41.667 7.75 0.00 38.80 2.73
2393 2453 6.968263 TCCTGTAATGAGATCTTAGGAGTG 57.032 41.667 0.00 0.00 0.00 3.51
2488 2562 3.924144 TGTTTGCAAATTAGCATCACCC 58.076 40.909 16.21 0.00 45.19 4.61
2526 2600 5.298276 TGGACACAGTGGAAAAGTAAATGTC 59.702 40.000 5.31 0.00 34.54 3.06
2581 2703 4.460034 TCCATCATGTGTCCTCAACATTTG 59.540 41.667 0.00 0.00 40.80 2.32
2595 2717 4.645588 TCAACATTTGGATGATGCTATGCA 59.354 37.500 0.00 0.00 38.69 3.96
3108 3346 2.639347 TGACTTCATGGGTGTCTGATGT 59.361 45.455 12.35 0.00 33.83 3.06
3733 3976 0.370273 GCTTGTTGTGGTCGCTATCG 59.630 55.000 0.00 0.00 0.00 2.92
3921 4164 6.913170 TGAAGTTGCTGTTAATTGAATCCTC 58.087 36.000 0.00 0.00 0.00 3.71
4039 4282 7.775053 TGCCCCTATCATTTATTTTATGTCC 57.225 36.000 0.00 0.00 0.00 4.02
4040 4283 6.432783 TGCCCCTATCATTTATTTTATGTCCG 59.567 38.462 0.00 0.00 0.00 4.79
4041 4284 6.433093 GCCCCTATCATTTATTTTATGTCCGT 59.567 38.462 0.00 0.00 0.00 4.69
4042 4285 7.361799 GCCCCTATCATTTATTTTATGTCCGTC 60.362 40.741 0.00 0.00 0.00 4.79
4043 4286 7.148474 CCCCTATCATTTATTTTATGTCCGTCG 60.148 40.741 0.00 0.00 0.00 5.12
4044 4287 7.601130 CCCTATCATTTATTTTATGTCCGTCGA 59.399 37.037 0.00 0.00 0.00 4.20
4045 4288 8.433126 CCTATCATTTATTTTATGTCCGTCGAC 58.567 37.037 5.18 5.18 39.66 4.20
4046 4289 6.592798 TCATTTATTTTATGTCCGTCGACC 57.407 37.500 10.58 0.00 38.32 4.79
4047 4290 6.107343 TCATTTATTTTATGTCCGTCGACCA 58.893 36.000 10.58 2.35 38.32 4.02
4048 4291 6.594547 TCATTTATTTTATGTCCGTCGACCAA 59.405 34.615 10.58 0.00 38.32 3.67
4049 4292 6.988622 TTTATTTTATGTCCGTCGACCAAT 57.011 33.333 10.58 1.22 38.32 3.16
4050 4293 8.552865 CATTTATTTTATGTCCGTCGACCAATA 58.447 33.333 10.58 0.24 38.32 1.90
4051 4294 8.489990 TTTATTTTATGTCCGTCGACCAATAA 57.510 30.769 10.58 6.41 38.32 1.40
4085 4346 1.135859 CGGAATGAACTTCTGCTGCAC 60.136 52.381 0.00 0.00 33.57 4.57
4086 4347 1.881973 GGAATGAACTTCTGCTGCACA 59.118 47.619 0.00 0.00 34.08 4.57
4183 4456 9.113838 GGTGTCTATATGTTCACTTTTGATCAT 57.886 33.333 0.00 4.18 42.42 2.45
4361 4634 3.005554 CTGCATCACAGGTACAGGAAAG 58.994 50.000 0.00 0.00 43.19 2.62
4368 4641 5.790593 TCACAGGTACAGGAAAGATGTTAC 58.209 41.667 0.00 0.00 32.02 2.50
4369 4642 5.305902 TCACAGGTACAGGAAAGATGTTACA 59.694 40.000 0.00 0.00 32.02 2.41
4370 4643 6.013725 TCACAGGTACAGGAAAGATGTTACAT 60.014 38.462 0.00 0.00 32.02 2.29
4371 4644 6.313905 CACAGGTACAGGAAAGATGTTACATC 59.686 42.308 16.80 16.80 32.02 3.06
4374 4647 5.291128 GGTACAGGAAAGATGTTACATCACG 59.709 44.000 24.79 10.09 32.02 4.35
4377 4650 3.935203 AGGAAAGATGTTACATCACGCAG 59.065 43.478 24.79 0.00 0.00 5.18
4394 4667 5.059404 ACGCAGTGGAATTTTCAATTAGG 57.941 39.130 0.00 0.00 42.51 2.69
4405 4681 7.976175 GGAATTTTCAATTAGGGTTCATCTGTC 59.024 37.037 0.00 0.00 0.00 3.51
4421 4697 5.939883 TCATCTGTCTGTTCCCAGTTAAATG 59.060 40.000 0.00 0.00 39.82 2.32
4430 4706 6.342906 TGTTCCCAGTTAAATGTCTATACCG 58.657 40.000 1.80 0.00 0.00 4.02
4431 4707 6.154877 TGTTCCCAGTTAAATGTCTATACCGA 59.845 38.462 1.80 0.00 0.00 4.69
4460 4770 8.862325 ATTCAACTATCAACATTGTTGGAGTA 57.138 30.769 25.16 15.26 42.62 2.59
4558 4870 7.776500 GGTCACTTAGAAGACTAGAAGAGGTAT 59.224 40.741 0.00 0.00 35.18 2.73
4752 5066 8.218338 AGCAATCCTACATCAAATTCTGTTAG 57.782 34.615 0.00 0.00 0.00 2.34
4851 5168 3.621715 GGAGGGAGTAACTTATTTGCACG 59.378 47.826 0.00 0.00 0.00 5.34
4865 5182 3.552604 TTGCACGCTAAAGCCTAAAAG 57.447 42.857 0.00 0.00 37.91 2.27
4928 5253 5.596772 TCCTTTTTCTTTTCTCCACCGAATT 59.403 36.000 0.00 0.00 0.00 2.17
4944 5269 3.186909 CGAATTGAGTCGGCTGTAATCA 58.813 45.455 0.00 0.00 37.37 2.57
4978 5303 6.037610 CAGATTCCCCTTTTATGTTCTCTTCG 59.962 42.308 0.00 0.00 0.00 3.79
5111 5436 5.629125 AGGCTCAAGAGAGAAACTTTTGAT 58.371 37.500 0.32 0.00 44.69 2.57
5135 5460 4.287720 GCTTTTTGACTTGGTTACTTCCG 58.712 43.478 0.00 0.00 0.00 4.30
5203 5528 2.010145 TTCGTGAGGTTAGCATCTGC 57.990 50.000 0.00 0.00 42.49 4.26
5265 5590 9.221775 GCTAAAACATTACTCGGATATTTGTTG 57.778 33.333 0.00 0.00 0.00 3.33
5272 5597 3.117888 ACTCGGATATTTGTTGCCCTGAT 60.118 43.478 0.00 0.00 0.00 2.90
5274 5599 3.136443 TCGGATATTTGTTGCCCTGATCT 59.864 43.478 0.00 0.00 0.00 2.75
5280 5605 2.655090 TGTTGCCCTGATCTCAAACA 57.345 45.000 0.00 0.00 0.00 2.83
5284 5609 1.202915 TGCCCTGATCTCAAACAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
5285 5610 1.888512 GCCCTGATCTCAAACAAGCAA 59.111 47.619 0.00 0.00 0.00 3.91
5302 5627 2.253603 GCAAAATGTGCGAGACCAATC 58.746 47.619 0.00 0.00 45.10 2.67
5310 5635 3.876914 TGTGCGAGACCAATCCATAAATC 59.123 43.478 0.00 0.00 0.00 2.17
5316 5641 4.744237 AGACCAATCCATAAATCCCATGG 58.256 43.478 4.14 4.14 43.74 3.66
5340 5665 1.705337 GCCACATGGTTCACGATCGG 61.705 60.000 20.98 8.65 37.57 4.18
5383 5710 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
5546 5897 5.305644 GGAAACTAGAGATTATCAGAGGGCA 59.694 44.000 0.00 0.00 0.00 5.36
5547 5898 5.799827 AACTAGAGATTATCAGAGGGCAC 57.200 43.478 0.00 0.00 0.00 5.01
5557 5908 4.504132 GAGGGCACGTCTGATGTC 57.496 61.111 0.00 0.00 40.48 3.06
5596 5947 0.035458 CCGTCTTCTTCCACCTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
5617 5968 1.444933 TCTTCTCCAGCCCCTGAAAA 58.555 50.000 0.00 0.00 32.44 2.29
5618 5969 1.073923 TCTTCTCCAGCCCCTGAAAAC 59.926 52.381 0.00 0.00 32.44 2.43
5620 5971 0.850100 TCTCCAGCCCCTGAAAACAA 59.150 50.000 0.00 0.00 32.44 2.83
5623 5974 3.075283 TCTCCAGCCCCTGAAAACAATTA 59.925 43.478 0.00 0.00 32.44 1.40
5624 5975 3.831911 CTCCAGCCCCTGAAAACAATTAA 59.168 43.478 0.00 0.00 32.44 1.40
5625 5976 3.576550 TCCAGCCCCTGAAAACAATTAAC 59.423 43.478 0.00 0.00 32.44 2.01
5626 5977 3.578282 CCAGCCCCTGAAAACAATTAACT 59.422 43.478 0.00 0.00 32.44 2.24
5627 5978 4.770010 CCAGCCCCTGAAAACAATTAACTA 59.230 41.667 0.00 0.00 32.44 2.24
5628 5979 5.105756 CCAGCCCCTGAAAACAATTAACTAG 60.106 44.000 0.00 0.00 32.44 2.57
5629 5980 5.710099 CAGCCCCTGAAAACAATTAACTAGA 59.290 40.000 0.00 0.00 32.44 2.43
5630 5981 6.378280 CAGCCCCTGAAAACAATTAACTAGAT 59.622 38.462 0.00 0.00 32.44 1.98
5631 5982 6.954102 AGCCCCTGAAAACAATTAACTAGATT 59.046 34.615 0.00 0.00 0.00 2.40
5632 5983 8.113462 AGCCCCTGAAAACAATTAACTAGATTA 58.887 33.333 0.00 0.00 0.00 1.75
5633 5984 8.406297 GCCCCTGAAAACAATTAACTAGATTAG 58.594 37.037 0.00 0.00 0.00 1.73
5634 5985 8.406297 CCCCTGAAAACAATTAACTAGATTAGC 58.594 37.037 0.00 0.00 0.00 3.09
5635 5986 8.956426 CCCTGAAAACAATTAACTAGATTAGCA 58.044 33.333 0.00 0.00 0.00 3.49
5656 6007 5.905480 CAAAATTTGCCACCTGAAGTTAC 57.095 39.130 0.00 0.00 0.00 2.50
5674 6041 5.197451 AGTTACCTGGACATGTTTTGAACA 58.803 37.500 0.00 0.00 46.94 3.18
5680 6047 4.753233 TGGACATGTTTTGAACAAACTGG 58.247 39.130 0.00 0.00 45.86 4.00
5686 6053 4.493547 TGTTTTGAACAAACTGGCTGAAG 58.506 39.130 0.00 0.00 38.72 3.02
5693 6060 2.618709 ACAAACTGGCTGAAGCTAACAC 59.381 45.455 1.74 0.00 41.70 3.32
5694 6061 2.618241 CAAACTGGCTGAAGCTAACACA 59.382 45.455 1.74 0.00 41.70 3.72
5695 6062 1.884235 ACTGGCTGAAGCTAACACAC 58.116 50.000 1.74 0.00 41.70 3.82
5704 6071 4.980590 TGAAGCTAACACACACTGTTTTG 58.019 39.130 0.00 0.00 40.45 2.44
5722 6089 6.269315 TGTTTTGTACAGCCTGTAATTGTTG 58.731 36.000 6.06 0.00 34.21 3.33
5731 6098 5.751509 CAGCCTGTAATTGTTGCTACGTATA 59.248 40.000 0.00 0.00 0.00 1.47
5735 6102 7.436080 GCCTGTAATTGTTGCTACGTATACTAA 59.564 37.037 0.00 0.00 0.00 2.24
5736 6103 8.749499 CCTGTAATTGTTGCTACGTATACTAAC 58.251 37.037 0.00 0.51 0.00 2.34
5737 6104 9.292846 CTGTAATTGTTGCTACGTATACTAACA 57.707 33.333 0.00 3.14 0.00 2.41
5738 6105 9.292846 TGTAATTGTTGCTACGTATACTAACAG 57.707 33.333 0.00 0.00 30.79 3.16
5739 6106 9.294030 GTAATTGTTGCTACGTATACTAACAGT 57.706 33.333 0.00 0.37 30.79 3.55
5741 6108 9.512435 AATTGTTGCTACGTATACTAACAGTAG 57.488 33.333 0.00 6.00 33.66 2.57
5742 6109 7.848223 TGTTGCTACGTATACTAACAGTAGA 57.152 36.000 15.14 2.89 37.54 2.59
5743 6110 7.688372 TGTTGCTACGTATACTAACAGTAGAC 58.312 38.462 15.14 8.42 38.99 2.59
5746 6113 7.495901 TGCTACGTATACTAACAGTAGACTCT 58.504 38.462 15.14 0.00 39.91 3.24
5747 6114 7.437565 TGCTACGTATACTAACAGTAGACTCTG 59.562 40.741 15.14 0.00 39.91 3.35
5749 6116 7.769272 ACGTATACTAACAGTAGACTCTGTC 57.231 40.000 8.87 0.00 46.25 3.51
5750 6117 6.760770 ACGTATACTAACAGTAGACTCTGTCC 59.239 42.308 8.87 0.00 46.25 4.02
5752 6119 7.042590 CGTATACTAACAGTAGACTCTGTCCAG 60.043 44.444 8.87 9.70 46.25 3.86
5753 6120 5.244189 ACTAACAGTAGACTCTGTCCAGA 57.756 43.478 15.57 0.00 46.25 3.86
5754 6121 5.632118 ACTAACAGTAGACTCTGTCCAGAA 58.368 41.667 15.57 0.00 46.25 3.02
5758 6125 4.835615 ACAGTAGACTCTGTCCAGAATTGT 59.164 41.667 0.00 0.00 44.07 2.71
5759 6126 5.305644 ACAGTAGACTCTGTCCAGAATTGTT 59.694 40.000 0.00 0.00 44.07 2.83
5761 6128 6.367422 CAGTAGACTCTGTCCAGAATTGTTTC 59.633 42.308 0.00 0.00 36.94 2.78
5762 6129 5.559148 AGACTCTGTCCAGAATTGTTTCT 57.441 39.130 0.00 0.00 43.09 2.52
5771 6138 3.228188 AGAATTGTTTCTGACTGGGCA 57.772 42.857 0.00 0.00 40.74 5.36
5772 6139 3.771216 AGAATTGTTTCTGACTGGGCAT 58.229 40.909 0.00 0.00 40.74 4.40
5774 6141 5.513233 AGAATTGTTTCTGACTGGGCATAT 58.487 37.500 0.00 0.00 40.74 1.78
5775 6142 6.662755 AGAATTGTTTCTGACTGGGCATATA 58.337 36.000 0.00 0.00 40.74 0.86
5776 6143 7.293073 AGAATTGTTTCTGACTGGGCATATAT 58.707 34.615 0.00 0.00 40.74 0.86
5796 6163 2.573609 ATACCTTGCGTGGCTCGACC 62.574 60.000 13.77 0.00 42.86 4.79
5811 6178 2.358247 ACCGCCACGTCATTGTCC 60.358 61.111 0.00 0.00 0.00 4.02
5817 6184 1.280982 CCACGTCATTGTCCTCGATG 58.719 55.000 0.00 0.00 36.93 3.84
5865 6232 1.153745 CACCTCCTCGTAGCTGCAC 60.154 63.158 1.02 0.00 0.00 4.57
5875 6242 1.148310 GTAGCTGCACACGTGACAAT 58.852 50.000 25.01 12.98 0.00 2.71
5888 6259 5.179368 ACACGTGACAATAGTGAAATGAAGG 59.821 40.000 25.01 0.00 39.04 3.46
5890 6261 5.408604 ACGTGACAATAGTGAAATGAAGGAC 59.591 40.000 0.00 0.00 0.00 3.85
5917 6288 5.295950 CATTTCTGTCTCTCTCAACACTGT 58.704 41.667 0.00 0.00 0.00 3.55
5918 6289 3.998099 TCTGTCTCTCTCAACACTGTG 57.002 47.619 6.19 6.19 0.00 3.66
5919 6290 3.555966 TCTGTCTCTCTCAACACTGTGA 58.444 45.455 15.86 0.00 0.00 3.58
5920 6291 4.148079 TCTGTCTCTCTCAACACTGTGAT 58.852 43.478 15.86 0.00 0.00 3.06
5921 6292 4.022503 TCTGTCTCTCTCAACACTGTGATG 60.023 45.833 15.86 13.40 0.00 3.07
5922 6293 3.006217 TGTCTCTCTCAACACTGTGATGG 59.994 47.826 15.86 7.40 0.00 3.51
5923 6294 3.256879 GTCTCTCTCAACACTGTGATGGA 59.743 47.826 15.86 11.05 0.00 3.41
5924 6295 4.081752 GTCTCTCTCAACACTGTGATGGAT 60.082 45.833 15.86 0.00 0.00 3.41
5926 6297 5.716703 TCTCTCTCAACACTGTGATGGATTA 59.283 40.000 15.86 0.00 0.00 1.75
5928 6299 7.561356 TCTCTCTCAACACTGTGATGGATTATA 59.439 37.037 15.86 0.00 0.00 0.98
5930 6301 7.343057 TCTCTCAACACTGTGATGGATTATACT 59.657 37.037 15.86 0.00 0.00 2.12
5931 6302 8.533569 TCTCAACACTGTGATGGATTATACTA 57.466 34.615 15.86 0.00 0.00 1.82
5968 6339 2.111384 AGGGATGTGATGCTTACTCGT 58.889 47.619 0.00 0.00 0.00 4.18
5976 6347 1.656095 GATGCTTACTCGTGCACTGTC 59.344 52.381 16.19 3.13 42.26 3.51
5985 6356 1.136690 CGTGCACTGTCGTGTTGTAT 58.863 50.000 16.19 0.00 43.16 2.29
6009 6380 1.609501 CCCCGAGTCCTGGTCTTGA 60.610 63.158 9.45 0.00 0.00 3.02
6022 6393 1.200948 GGTCTTGAGGCTGAAATGCAC 59.799 52.381 0.00 0.00 34.04 4.57
6023 6394 1.881973 GTCTTGAGGCTGAAATGCACA 59.118 47.619 0.00 0.00 34.04 4.57
6043 6414 5.758924 CACACATGCATGATCATTAGAAGG 58.241 41.667 32.75 1.77 0.00 3.46
6044 6415 5.298527 CACACATGCATGATCATTAGAAGGT 59.701 40.000 32.75 2.54 0.00 3.50
6049 6420 7.287005 ACATGCATGATCATTAGAAGGTTGATT 59.713 33.333 32.75 0.22 30.48 2.57
6050 6421 7.034685 TGCATGATCATTAGAAGGTTGATTG 57.965 36.000 5.16 0.00 30.48 2.67
6051 6422 6.829811 TGCATGATCATTAGAAGGTTGATTGA 59.170 34.615 5.16 0.00 30.48 2.57
6064 6435 9.739276 AGAAGGTTGATTGATATTTACAACTGA 57.261 29.630 0.00 0.00 40.08 3.41
6105 6514 5.070580 CCCTTCTTAGTGGTAGGATTAGTGG 59.929 48.000 0.00 0.00 0.00 4.00
6106 6515 5.070580 CCTTCTTAGTGGTAGGATTAGTGGG 59.929 48.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
365 366 2.407428 CCTGGTCGAGCTCTACGCA 61.407 63.158 16.64 10.18 42.61 5.24
540 541 2.452813 CGGTTGAGATGTTCGCGGG 61.453 63.158 6.13 0.00 0.00 6.13
764 765 4.809496 ATGGCCGCCAAGCTCCTG 62.809 66.667 18.00 0.00 36.95 3.86
788 798 1.990060 CCATGGGAGTGGAGACGGT 60.990 63.158 2.85 0.00 42.02 4.83
793 803 0.329261 TCTTTGCCATGGGAGTGGAG 59.671 55.000 15.13 7.68 42.02 3.86
812 822 3.062500 CTCTGCGGCTCGAAGCTCT 62.063 63.158 0.00 0.00 41.99 4.09
813 823 2.581953 CTCTGCGGCTCGAAGCTC 60.582 66.667 0.00 2.28 41.99 4.09
819 829 3.589654 TTGGTTCCTCTGCGGCTCG 62.590 63.158 0.00 0.00 0.00 5.03
854 866 1.207329 ACACTGGACCGAAGCTTATCC 59.793 52.381 14.33 14.33 0.00 2.59
855 867 2.166664 AGACACTGGACCGAAGCTTATC 59.833 50.000 0.00 0.00 0.00 1.75
856 868 2.166664 GAGACACTGGACCGAAGCTTAT 59.833 50.000 0.00 0.00 0.00 1.73
857 869 1.544691 GAGACACTGGACCGAAGCTTA 59.455 52.381 0.00 0.00 0.00 3.09
878 890 3.019003 TAAGCAGCTCGGCCCAGTC 62.019 63.158 0.00 0.00 0.00 3.51
880 892 2.512515 GTAAGCAGCTCGGCCCAG 60.513 66.667 0.00 0.00 0.00 4.45
888 900 2.124570 CGGCCCATGTAAGCAGCT 60.125 61.111 0.00 0.00 0.00 4.24
889 901 2.124736 TCGGCCCATGTAAGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
895 907 2.889617 CTCGTGTCGGCCCATGTA 59.110 61.111 0.00 0.00 0.00 2.29
921 933 3.300388 TGTGTATTCTTTTGTTGGGCCA 58.700 40.909 0.00 0.00 0.00 5.36
956 968 0.039798 TCTAGCTTCGTTTGCGTCGT 60.040 50.000 0.00 0.00 39.49 4.34
1604 1641 7.577303 ACCATAGAAGCATAGGAGATCAAAAA 58.423 34.615 0.00 0.00 0.00 1.94
1605 1642 7.141758 ACCATAGAAGCATAGGAGATCAAAA 57.858 36.000 0.00 0.00 0.00 2.44
1606 1643 6.753913 ACCATAGAAGCATAGGAGATCAAA 57.246 37.500 0.00 0.00 0.00 2.69
1607 1644 6.753913 AACCATAGAAGCATAGGAGATCAA 57.246 37.500 0.00 0.00 0.00 2.57
2179 2237 4.761739 TGTCTGAGATGGGAAAATGTTGTC 59.238 41.667 0.00 0.00 0.00 3.18
2182 2240 5.184479 CACATGTCTGAGATGGGAAAATGTT 59.816 40.000 17.74 0.00 0.00 2.71
2219 2277 2.559231 GCCTGTTTCGGGTTTCCAAATA 59.441 45.455 0.00 0.00 31.34 1.40
2226 2284 0.744281 CAGTTGCCTGTTTCGGGTTT 59.256 50.000 0.00 0.00 33.80 3.27
2230 2288 1.101049 ACACCAGTTGCCTGTTTCGG 61.101 55.000 0.00 0.00 36.95 4.30
2581 2703 3.345508 TCATCCTGCATAGCATCATCC 57.654 47.619 0.00 0.00 38.13 3.51
3060 3292 4.353777 TGGTCTTAAGATAGTGACTGGCT 58.646 43.478 8.75 0.00 0.00 4.75
3896 4139 6.917533 AGGATTCAATTAACAGCAACTTCAG 58.082 36.000 0.00 0.00 0.00 3.02
4034 4277 3.604875 ACTTTATTGGTCGACGGACAT 57.395 42.857 9.92 1.25 45.28 3.06
4035 4278 4.517952 TTACTTTATTGGTCGACGGACA 57.482 40.909 9.92 0.00 45.28 4.02
4036 4279 7.276438 AGTTTATTACTTTATTGGTCGACGGAC 59.724 37.037 9.92 0.00 36.68 4.79
4037 4280 7.276218 CAGTTTATTACTTTATTGGTCGACGGA 59.724 37.037 9.92 0.14 33.85 4.69
4038 4281 7.063780 ACAGTTTATTACTTTATTGGTCGACGG 59.936 37.037 9.92 0.00 33.85 4.79
4039 4282 7.956558 ACAGTTTATTACTTTATTGGTCGACG 58.043 34.615 9.92 0.00 33.85 5.12
4040 4283 8.106348 CGACAGTTTATTACTTTATTGGTCGAC 58.894 37.037 7.13 7.13 43.15 4.20
4041 4284 7.276218 CCGACAGTTTATTACTTTATTGGTCGA 59.724 37.037 0.00 0.00 43.15 4.20
4042 4285 7.276218 TCCGACAGTTTATTACTTTATTGGTCG 59.724 37.037 0.00 0.00 41.59 4.79
4043 4286 8.483307 TCCGACAGTTTATTACTTTATTGGTC 57.517 34.615 0.00 0.00 33.85 4.02
4044 4287 8.851541 TTCCGACAGTTTATTACTTTATTGGT 57.148 30.769 0.00 0.00 33.85 3.67
4045 4288 9.716507 CATTCCGACAGTTTATTACTTTATTGG 57.283 33.333 0.00 0.00 33.85 3.16
4049 4292 9.715121 AGTTCATTCCGACAGTTTATTACTTTA 57.285 29.630 0.00 0.00 33.85 1.85
4050 4293 8.617290 AGTTCATTCCGACAGTTTATTACTTT 57.383 30.769 0.00 0.00 33.85 2.66
4051 4294 8.617290 AAGTTCATTCCGACAGTTTATTACTT 57.383 30.769 0.00 0.00 33.85 2.24
4361 4634 2.616960 TCCACTGCGTGATGTAACATC 58.383 47.619 9.75 0.00 35.23 3.06
4368 4641 3.557577 TGAAAATTCCACTGCGTGATG 57.442 42.857 9.75 0.00 35.23 3.07
4369 4642 4.789012 ATTGAAAATTCCACTGCGTGAT 57.211 36.364 9.75 0.00 35.23 3.06
4370 4643 4.582701 AATTGAAAATTCCACTGCGTGA 57.417 36.364 9.75 0.00 35.23 4.35
4371 4644 4.858692 CCTAATTGAAAATTCCACTGCGTG 59.141 41.667 2.27 2.27 0.00 5.34
4374 4647 5.405935 ACCCTAATTGAAAATTCCACTGC 57.594 39.130 0.00 0.00 0.00 4.40
4377 4650 7.761249 CAGATGAACCCTAATTGAAAATTCCAC 59.239 37.037 0.00 0.00 0.00 4.02
4389 4662 4.080299 GGGAACAGACAGATGAACCCTAAT 60.080 45.833 0.00 0.00 36.71 1.73
4390 4663 3.263425 GGGAACAGACAGATGAACCCTAA 59.737 47.826 0.00 0.00 36.71 2.69
4391 4664 2.838202 GGGAACAGACAGATGAACCCTA 59.162 50.000 0.00 0.00 36.71 3.53
4393 4666 1.351017 TGGGAACAGACAGATGAACCC 59.649 52.381 0.00 0.00 38.52 4.11
4394 4667 2.859165 TGGGAACAGACAGATGAACC 57.141 50.000 0.00 0.00 35.01 3.62
4532 4844 5.947566 ACCTCTTCTAGTCTTCTAAGTGACC 59.052 44.000 0.00 0.00 34.02 4.02
4558 4870 7.994425 TGAAAAGGCTTTCATAGTATTGTGA 57.006 32.000 13.76 0.00 44.76 3.58
4851 5168 8.940952 CCATCATATCTACTTTTAGGCTTTAGC 58.059 37.037 0.00 0.00 41.14 3.09
4865 5182 8.420222 CCATCTAGAACCATCCATCATATCTAC 58.580 40.741 0.00 0.00 0.00 2.59
4928 5253 2.892374 CATGTGATTACAGCCGACTCA 58.108 47.619 0.00 0.00 40.79 3.41
5111 5436 4.098807 GGAAGTAACCAAGTCAAAAAGCCA 59.901 41.667 0.00 0.00 0.00 4.75
5135 5460 4.601019 CATCATTATTGGCGTTGTCTTCC 58.399 43.478 0.00 0.00 0.00 3.46
5203 5528 2.096762 CACAAGTAGTGCACACATCACG 60.097 50.000 21.04 3.43 42.15 4.35
5241 5566 8.185505 GGCAACAAATATCCGAGTAATGTTTTA 58.814 33.333 0.00 0.00 0.00 1.52
5265 5590 1.538047 TGCTTGTTTGAGATCAGGGC 58.462 50.000 0.00 0.00 0.00 5.19
5284 5609 2.513753 TGGATTGGTCTCGCACATTTT 58.486 42.857 0.00 0.00 0.00 1.82
5285 5610 2.198827 TGGATTGGTCTCGCACATTT 57.801 45.000 0.00 0.00 0.00 2.32
5292 5617 4.085357 TGGGATTTATGGATTGGTCTCG 57.915 45.455 0.00 0.00 0.00 4.04
5302 5627 1.891150 GCTCAGCCATGGGATTTATGG 59.109 52.381 15.13 0.00 46.28 2.74
5316 5641 1.878775 GTGAACCATGTGGCTCAGC 59.121 57.895 5.42 0.00 40.60 4.26
5340 5665 9.490379 TTTTCTCTTGAGTAAAGTATCCTTCAC 57.510 33.333 0.00 0.00 37.18 3.18
5350 5675 6.961554 GTGTGTGTGTTTTCTCTTGAGTAAAG 59.038 38.462 3.29 0.00 37.22 1.85
5353 5678 5.350365 GTGTGTGTGTGTTTTCTCTTGAGTA 59.650 40.000 0.00 0.00 0.00 2.59
5354 5679 4.154195 GTGTGTGTGTGTTTTCTCTTGAGT 59.846 41.667 0.00 0.00 0.00 3.41
5355 5680 4.154015 TGTGTGTGTGTGTTTTCTCTTGAG 59.846 41.667 0.00 0.00 0.00 3.02
5356 5681 4.068599 TGTGTGTGTGTGTTTTCTCTTGA 58.931 39.130 0.00 0.00 0.00 3.02
5357 5682 4.158384 GTGTGTGTGTGTGTTTTCTCTTG 58.842 43.478 0.00 0.00 0.00 3.02
5359 5684 3.188460 GTGTGTGTGTGTGTGTTTTCTCT 59.812 43.478 0.00 0.00 0.00 3.10
5360 5685 3.058570 TGTGTGTGTGTGTGTGTTTTCTC 60.059 43.478 0.00 0.00 0.00 2.87
5361 5686 2.881513 TGTGTGTGTGTGTGTGTTTTCT 59.118 40.909 0.00 0.00 0.00 2.52
5362 5687 2.977169 GTGTGTGTGTGTGTGTGTTTTC 59.023 45.455 0.00 0.00 0.00 2.29
5446 5776 3.558505 GCATGTCATGACACAACACTTC 58.441 45.455 30.09 4.74 45.05 3.01
5462 5813 1.279271 GGTTACAGTGGAGAGGCATGT 59.721 52.381 0.00 0.00 0.00 3.21
5519 5870 7.419634 GCCCTCTGATAATCTCTAGTTTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
5530 5881 2.625790 AGACGTGCCCTCTGATAATCTC 59.374 50.000 0.00 0.00 0.00 2.75
5596 5947 2.568546 TTCAGGGGCTGGAGAAGATA 57.431 50.000 0.00 0.00 31.51 1.98
5634 5985 4.749598 GGTAACTTCAGGTGGCAAATTTTG 59.250 41.667 4.72 4.72 0.00 2.44
5635 5986 4.956085 GGTAACTTCAGGTGGCAAATTTT 58.044 39.130 0.00 0.00 0.00 1.82
5636 5987 4.600692 GGTAACTTCAGGTGGCAAATTT 57.399 40.909 0.00 0.00 0.00 1.82
5650 6001 5.654650 TGTTCAAAACATGTCCAGGTAACTT 59.345 36.000 0.00 0.00 40.61 2.66
5656 6007 4.805192 CAGTTTGTTCAAAACATGTCCAGG 59.195 41.667 0.00 0.00 41.79 4.45
5674 6041 2.618709 GTGTGTTAGCTTCAGCCAGTTT 59.381 45.455 0.00 0.00 43.38 2.66
5680 6047 2.213499 ACAGTGTGTGTTAGCTTCAGC 58.787 47.619 0.00 0.00 34.94 4.26
5704 6071 4.201685 CGTAGCAACAATTACAGGCTGTAC 60.202 45.833 26.21 13.17 36.10 2.90
5717 6084 8.177663 GTCTACTGTTAGTATACGTAGCAACAA 58.822 37.037 0.08 0.00 29.08 2.83
5722 6089 7.786114 CAGAGTCTACTGTTAGTATACGTAGC 58.214 42.308 0.08 0.00 34.25 3.58
5735 6102 7.952816 GAAACAATTCTGGACAGAGTCTACTGT 60.953 40.741 1.92 0.00 41.46 3.55
5736 6103 5.398603 ACAATTCTGGACAGAGTCTACTG 57.601 43.478 1.92 0.00 42.78 2.74
5737 6104 6.268847 AGAAACAATTCTGGACAGAGTCTACT 59.731 38.462 1.92 0.00 44.25 2.57
5738 6105 6.459923 AGAAACAATTCTGGACAGAGTCTAC 58.540 40.000 1.92 0.00 44.25 2.59
5739 6106 6.672266 AGAAACAATTCTGGACAGAGTCTA 57.328 37.500 1.92 0.00 44.25 2.59
5740 6107 5.559148 AGAAACAATTCTGGACAGAGTCT 57.441 39.130 1.92 0.00 44.25 3.24
5752 6119 5.841957 ATATGCCCAGTCAGAAACAATTC 57.158 39.130 0.00 0.00 35.70 2.17
5754 6121 9.672673 GTATATATATGCCCAGTCAGAAACAAT 57.327 33.333 5.44 0.00 0.00 2.71
5758 6125 8.321353 CAAGGTATATATATGCCCAGTCAGAAA 58.679 37.037 22.19 0.00 39.00 2.52
5759 6126 7.581464 GCAAGGTATATATATGCCCAGTCAGAA 60.581 40.741 22.19 0.00 39.00 3.02
5761 6128 6.051717 GCAAGGTATATATATGCCCAGTCAG 58.948 44.000 22.19 9.98 39.00 3.51
5762 6129 5.395214 CGCAAGGTATATATATGCCCAGTCA 60.395 44.000 22.19 0.00 39.00 3.41
5765 6132 4.811024 CACGCAAGGTATATATATGCCCAG 59.189 45.833 22.19 16.77 46.39 4.45
5767 6134 4.127171 CCACGCAAGGTATATATATGCCC 58.873 47.826 22.19 13.63 46.39 5.36
5769 6136 4.442706 AGCCACGCAAGGTATATATATGC 58.557 43.478 5.44 3.86 46.39 3.14
5771 6138 4.643334 TCGAGCCACGCAAGGTATATATAT 59.357 41.667 0.00 0.00 46.39 0.86
5772 6139 4.011698 TCGAGCCACGCAAGGTATATATA 58.988 43.478 0.00 0.00 46.39 0.86
5774 6141 2.030540 GTCGAGCCACGCAAGGTATATA 60.031 50.000 0.00 0.00 46.39 0.86
5775 6142 1.037493 TCGAGCCACGCAAGGTATAT 58.963 50.000 0.00 0.00 46.39 0.86
5776 6143 0.101759 GTCGAGCCACGCAAGGTATA 59.898 55.000 0.00 0.00 46.39 1.47
5796 6163 2.444624 CGAGGACAATGACGTGGCG 61.445 63.158 0.00 0.00 0.00 5.69
5799 6166 1.135112 TCCATCGAGGACAATGACGTG 60.135 52.381 0.00 0.00 43.07 4.49
5811 6178 2.800881 TCGTCATCCAATCCATCGAG 57.199 50.000 0.00 0.00 0.00 4.04
5817 6184 0.107214 TGGGCTTCGTCATCCAATCC 60.107 55.000 0.00 0.00 0.00 3.01
5820 6187 1.299648 CCTGGGCTTCGTCATCCAA 59.700 57.895 0.00 0.00 0.00 3.53
5822 6189 2.190578 CCCTGGGCTTCGTCATCC 59.809 66.667 0.00 0.00 0.00 3.51
5844 6211 1.140589 CAGCTACGAGGAGGTGCTG 59.859 63.158 1.24 0.00 43.71 4.41
5865 6232 5.408299 TCCTTCATTTCACTATTGTCACGTG 59.592 40.000 9.94 9.94 0.00 4.49
5875 6242 4.574674 ATGCCAGTCCTTCATTTCACTA 57.425 40.909 0.00 0.00 0.00 2.74
5888 6259 3.056250 TGAGAGAGACAGAAATGCCAGTC 60.056 47.826 0.00 0.00 0.00 3.51
5890 6261 3.606595 TGAGAGAGACAGAAATGCCAG 57.393 47.619 0.00 0.00 0.00 4.85
5928 6299 9.125026 CATCCCTGCTAATTTTCAATTACTAGT 57.875 33.333 0.00 0.00 0.00 2.57
5930 6301 8.902806 CACATCCCTGCTAATTTTCAATTACTA 58.097 33.333 0.00 0.00 0.00 1.82
5931 6302 7.615365 TCACATCCCTGCTAATTTTCAATTACT 59.385 33.333 0.00 0.00 0.00 2.24
5936 6307 5.394443 GCATCACATCCCTGCTAATTTTCAA 60.394 40.000 0.00 0.00 33.15 2.69
5947 6318 2.159043 ACGAGTAAGCATCACATCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
5976 6347 2.043980 GGGGCCACCATACAACACG 61.044 63.158 4.39 0.00 39.85 4.49
6022 6393 6.038936 TCAACCTTCTAATGATCATGCATGTG 59.961 38.462 25.43 11.51 0.00 3.21
6023 6394 6.124340 TCAACCTTCTAATGATCATGCATGT 58.876 36.000 25.43 13.42 0.00 3.21
6075 6446 6.853669 TCCTACCACTAAGAAGGGAGTATA 57.146 41.667 0.00 0.00 33.76 1.47
6076 6447 5.745988 TCCTACCACTAAGAAGGGAGTAT 57.254 43.478 0.00 0.00 33.76 2.12
6077 6448 5.745988 ATCCTACCACTAAGAAGGGAGTA 57.254 43.478 0.00 0.00 33.76 2.59
6078 6449 4.628661 ATCCTACCACTAAGAAGGGAGT 57.371 45.455 0.00 0.00 33.76 3.85
6079 6450 6.041069 CACTAATCCTACCACTAAGAAGGGAG 59.959 46.154 0.00 0.00 35.49 4.30
6081 6452 5.070580 CCACTAATCCTACCACTAAGAAGGG 59.929 48.000 0.00 0.00 0.00 3.95
6082 6453 5.070580 CCCACTAATCCTACCACTAAGAAGG 59.929 48.000 0.00 0.00 0.00 3.46
6083 6454 5.661759 ACCCACTAATCCTACCACTAAGAAG 59.338 44.000 0.00 0.00 0.00 2.85
6105 6514 3.181454 CCCTCATGTACCTGGTAATCACC 60.181 52.174 8.40 0.00 46.00 4.02
6106 6515 3.454812 ACCCTCATGTACCTGGTAATCAC 59.545 47.826 8.40 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.