Multiple sequence alignment - TraesCS5D01G530800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G530800 chr5D 100.000 3425 0 0 1 3425 546818301 546821725 0.000000e+00 6325.0
1 TraesCS5D01G530800 chr5D 100.000 33 0 0 3114 3146 164651473 164651441 1.030000e-05 62.1
2 TraesCS5D01G530800 chr5D 92.500 40 2 1 3114 3153 300427530 300427492 4.770000e-04 56.5
3 TraesCS5D01G530800 chr5B 87.492 1559 125 33 1914 3425 689906286 689904751 0.000000e+00 1735.0
4 TraesCS5D01G530800 chr5B 84.545 1417 101 60 517 1867 689907735 689906371 0.000000e+00 1295.0
5 TraesCS5D01G530800 chr4A 85.267 1405 86 46 244 1608 622181838 622180515 0.000000e+00 1336.0
6 TraesCS5D01G530800 chr4A 89.066 942 71 18 2492 3425 622180189 622179272 0.000000e+00 1140.0
7 TraesCS5D01G530800 chr2D 97.561 164 4 0 11 174 582498656 582498493 7.240000e-72 281.0
8 TraesCS5D01G530800 chr2D 95.732 164 7 0 14 177 239988354 239988191 7.290000e-67 265.0
9 TraesCS5D01G530800 chr1D 95.000 180 8 1 3 181 242557372 242557551 7.240000e-72 281.0
10 TraesCS5D01G530800 chr4D 95.758 165 7 0 11 175 65101460 65101296 2.030000e-67 267.0
11 TraesCS5D01G530800 chr4D 94.512 164 7 1 11 174 334164552 334164391 5.670000e-63 252.0
12 TraesCS5D01G530800 chr4D 93.452 168 9 1 11 178 64390471 64390636 7.340000e-62 248.0
13 TraesCS5D01G530800 chr4D 93.452 168 8 2 7 174 326379868 326380032 2.640000e-61 246.0
14 TraesCS5D01G530800 chr2A 92.222 180 10 3 11 188 184561154 184561331 5.670000e-63 252.0
15 TraesCS5D01G530800 chr6D 92.571 175 10 2 10 183 145462462 145462634 7.340000e-62 248.0
16 TraesCS5D01G530800 chr6D 93.750 48 3 0 3114 3161 142149707 142149660 4.740000e-09 73.1
17 TraesCS5D01G530800 chr6D 83.582 67 11 0 3096 3162 462404393 462404459 2.850000e-06 63.9
18 TraesCS5D01G530800 chr6D 85.965 57 8 0 3106 3162 452076746 452076802 1.030000e-05 62.1
19 TraesCS5D01G530800 chr5A 100.000 33 0 0 3114 3146 3362186 3362218 1.030000e-05 62.1
20 TraesCS5D01G530800 chr1B 100.000 33 0 0 3114 3146 296290779 296290747 1.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G530800 chr5D 546818301 546821725 3424 False 6325 6325 100.0000 1 3425 1 chr5D.!!$F1 3424
1 TraesCS5D01G530800 chr5B 689904751 689907735 2984 True 1515 1735 86.0185 517 3425 2 chr5B.!!$R1 2908
2 TraesCS5D01G530800 chr4A 622179272 622181838 2566 True 1238 1336 87.1665 244 3425 2 chr4A.!!$R1 3181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.394762 GGCATGGCTGACCTTGATGA 60.395 55.0 12.86 0.0 42.44 2.92 F
1445 1519 0.169672 GCAATCTCATGCACGCACTT 59.830 50.0 0.00 0.0 45.70 3.16 F
1650 1733 0.036732 ACACGTACCTCTACCGACCA 59.963 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1727 0.100682 CGGAGAGTGTGTATGGTCGG 59.899 60.000 0.0 0.0 0.0 4.79 R
2355 2532 0.035458 CCGTCTTCTTCCACCTTGCT 59.965 55.000 0.0 0.0 0.0 3.91 R
2667 2873 1.202915 TGCCCTGATCTCAAACAAGCA 60.203 47.619 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.791953 TTCTCCTAGATACTCCCTCCG 57.208 52.381 0.00 0.00 0.00 4.63
21 22 2.703947 TCTCCTAGATACTCCCTCCGT 58.296 52.381 0.00 0.00 0.00 4.69
22 23 3.054576 TCTCCTAGATACTCCCTCCGTT 58.945 50.000 0.00 0.00 0.00 4.44
23 24 3.072768 TCTCCTAGATACTCCCTCCGTTC 59.927 52.174 0.00 0.00 0.00 3.95
24 25 2.107901 TCCTAGATACTCCCTCCGTTCC 59.892 54.545 0.00 0.00 0.00 3.62
25 26 2.108601 CCTAGATACTCCCTCCGTTCCT 59.891 54.545 0.00 0.00 0.00 3.36
26 27 3.330110 CCTAGATACTCCCTCCGTTCCTA 59.670 52.174 0.00 0.00 0.00 2.94
27 28 3.967467 AGATACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
28 29 4.261411 AGATACTCCCTCCGTTCCTAAA 57.739 45.455 0.00 0.00 0.00 1.85
29 30 4.817286 AGATACTCCCTCCGTTCCTAAAT 58.183 43.478 0.00 0.00 0.00 1.40
30 31 5.961897 AGATACTCCCTCCGTTCCTAAATA 58.038 41.667 0.00 0.00 0.00 1.40
31 32 6.563163 AGATACTCCCTCCGTTCCTAAATAT 58.437 40.000 0.00 0.00 0.00 1.28
32 33 7.706674 AGATACTCCCTCCGTTCCTAAATATA 58.293 38.462 0.00 0.00 0.00 0.86
33 34 8.175431 AGATACTCCCTCCGTTCCTAAATATAA 58.825 37.037 0.00 0.00 0.00 0.98
34 35 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
35 36 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
36 37 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
37 38 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
38 39 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
39 40 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
40 41 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
41 42 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
45 46 9.845305 CGTTCCTAAATATAAGTCTTTTTAGCG 57.155 33.333 8.75 5.31 32.72 4.26
68 69 8.120465 AGCGATTTTAAAATGAACTACATACGG 58.880 33.333 17.98 0.00 38.38 4.02
69 70 8.117988 GCGATTTTAAAATGAACTACATACGGA 58.882 33.333 17.98 0.00 38.38 4.69
81 82 9.729281 TGAACTACATACGGATGTATATAGACA 57.271 33.333 20.64 12.87 45.42 3.41
111 112 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
112 113 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
113 114 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
114 115 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
115 116 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
116 117 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
117 118 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
118 119 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
119 120 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
120 121 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
121 122 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
122 123 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
123 124 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
124 125 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
125 126 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
126 127 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
127 128 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
128 129 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
129 130 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
130 131 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
131 132 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
132 133 4.587262 TGCTCCGTATGTAGTCCATATTGT 59.413 41.667 0.00 0.00 38.29 2.71
133 134 4.923871 GCTCCGTATGTAGTCCATATTGTG 59.076 45.833 0.00 0.00 38.29 3.33
165 166 9.169592 TCCAAAAAGACTTATATTTAGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
166 167 9.169592 CCAAAAAGACTTATATTTAGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
168 169 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
169 170 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
170 171 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
171 172 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
172 173 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
173 174 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
174 175 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
175 176 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
176 177 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
177 178 2.617840 AGGAACGGAGGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
178 179 2.177734 AGGAACGGAGGGAGTAGAAAC 58.822 52.381 0.00 0.00 0.00 2.78
179 180 2.177734 GGAACGGAGGGAGTAGAAACT 58.822 52.381 0.00 0.00 39.21 2.66
180 181 3.011032 AGGAACGGAGGGAGTAGAAACTA 59.989 47.826 0.00 0.00 35.56 2.24
181 182 3.380954 GGAACGGAGGGAGTAGAAACTAG 59.619 52.174 0.00 0.00 35.56 2.57
182 183 3.735720 ACGGAGGGAGTAGAAACTAGT 57.264 47.619 0.00 0.00 35.56 2.57
183 184 4.851639 ACGGAGGGAGTAGAAACTAGTA 57.148 45.455 0.00 0.00 35.56 1.82
184 185 4.779696 ACGGAGGGAGTAGAAACTAGTAG 58.220 47.826 0.00 0.00 35.56 2.57
185 186 4.472833 ACGGAGGGAGTAGAAACTAGTAGA 59.527 45.833 3.59 0.00 35.56 2.59
186 187 5.045286 ACGGAGGGAGTAGAAACTAGTAGAA 60.045 44.000 3.59 0.00 35.56 2.10
187 188 5.528320 CGGAGGGAGTAGAAACTAGTAGAAG 59.472 48.000 3.59 0.00 35.56 2.85
188 189 5.829391 GGAGGGAGTAGAAACTAGTAGAAGG 59.171 48.000 3.59 0.00 35.56 3.46
189 190 6.353777 GGAGGGAGTAGAAACTAGTAGAAGGA 60.354 46.154 3.59 0.00 35.56 3.36
190 191 7.042106 AGGGAGTAGAAACTAGTAGAAGGAA 57.958 40.000 3.59 0.00 35.56 3.36
191 192 7.654452 AGGGAGTAGAAACTAGTAGAAGGAAT 58.346 38.462 3.59 0.00 35.56 3.01
192 193 7.562088 AGGGAGTAGAAACTAGTAGAAGGAATG 59.438 40.741 3.59 0.00 35.56 2.67
193 194 7.342541 GGGAGTAGAAACTAGTAGAAGGAATGT 59.657 40.741 3.59 0.00 35.56 2.71
194 195 9.406113 GGAGTAGAAACTAGTAGAAGGAATGTA 57.594 37.037 3.59 0.00 35.56 2.29
196 197 9.978336 AGTAGAAACTAGTAGAAGGAATGTAGT 57.022 33.333 3.59 0.00 32.84 2.73
198 199 8.880991 AGAAACTAGTAGAAGGAATGTAGTCA 57.119 34.615 3.59 0.00 0.00 3.41
199 200 9.482175 AGAAACTAGTAGAAGGAATGTAGTCAT 57.518 33.333 3.59 0.00 35.59 3.06
200 201 9.522804 GAAACTAGTAGAAGGAATGTAGTCATG 57.477 37.037 3.59 0.00 34.19 3.07
201 202 8.596781 AACTAGTAGAAGGAATGTAGTCATGT 57.403 34.615 3.59 0.00 34.19 3.21
202 203 8.001881 ACTAGTAGAAGGAATGTAGTCATGTG 57.998 38.462 3.59 0.00 34.19 3.21
203 204 6.227298 AGTAGAAGGAATGTAGTCATGTGG 57.773 41.667 0.00 0.00 34.19 4.17
204 205 3.878778 AGAAGGAATGTAGTCATGTGGC 58.121 45.455 0.00 0.00 34.19 5.01
205 206 3.264193 AGAAGGAATGTAGTCATGTGGCA 59.736 43.478 0.00 0.00 34.19 4.92
206 207 3.939740 AGGAATGTAGTCATGTGGCAT 57.060 42.857 0.00 0.00 34.19 4.40
207 208 3.548770 AGGAATGTAGTCATGTGGCATG 58.451 45.455 2.93 2.93 34.19 4.06
208 209 2.620115 GGAATGTAGTCATGTGGCATGG 59.380 50.000 8.95 0.00 34.19 3.66
209 210 1.683943 ATGTAGTCATGTGGCATGGC 58.316 50.000 13.29 13.29 32.51 4.40
210 211 0.620030 TGTAGTCATGTGGCATGGCT 59.380 50.000 21.08 18.33 37.73 4.75
211 212 1.019673 GTAGTCATGTGGCATGGCTG 58.980 55.000 21.92 10.65 35.38 4.85
212 213 0.911053 TAGTCATGTGGCATGGCTGA 59.089 50.000 21.92 12.94 35.38 4.26
213 214 0.679002 AGTCATGTGGCATGGCTGAC 60.679 55.000 24.24 24.24 37.16 3.51
214 215 1.378911 TCATGTGGCATGGCTGACC 60.379 57.895 21.08 6.36 0.00 4.02
215 216 1.379443 CATGTGGCATGGCTGACCT 60.379 57.895 21.08 1.21 36.63 3.85
216 217 0.968901 CATGTGGCATGGCTGACCTT 60.969 55.000 21.08 0.00 36.63 3.50
217 218 0.968901 ATGTGGCATGGCTGACCTTG 60.969 55.000 21.08 0.00 42.66 3.61
218 219 1.303561 GTGGCATGGCTGACCTTGA 60.304 57.895 21.08 0.00 42.44 3.02
219 220 0.682209 GTGGCATGGCTGACCTTGAT 60.682 55.000 21.08 0.00 42.44 2.57
220 221 0.681887 TGGCATGGCTGACCTTGATG 60.682 55.000 21.08 0.00 42.44 3.07
221 222 0.394762 GGCATGGCTGACCTTGATGA 60.395 55.000 12.86 0.00 42.44 2.92
222 223 1.688772 GCATGGCTGACCTTGATGAT 58.311 50.000 0.00 0.00 42.44 2.45
223 224 1.337071 GCATGGCTGACCTTGATGATG 59.663 52.381 0.00 0.00 42.44 3.07
224 225 1.337071 CATGGCTGACCTTGATGATGC 59.663 52.381 0.00 0.00 42.44 3.91
225 226 0.622136 TGGCTGACCTTGATGATGCT 59.378 50.000 0.00 0.00 36.63 3.79
226 227 1.839354 TGGCTGACCTTGATGATGCTA 59.161 47.619 0.00 0.00 36.63 3.49
227 228 2.440627 TGGCTGACCTTGATGATGCTAT 59.559 45.455 0.00 0.00 36.63 2.97
228 229 2.812591 GGCTGACCTTGATGATGCTATG 59.187 50.000 0.00 0.00 0.00 2.23
229 230 3.495629 GGCTGACCTTGATGATGCTATGA 60.496 47.826 0.00 0.00 0.00 2.15
230 231 4.132336 GCTGACCTTGATGATGCTATGAA 58.868 43.478 0.00 0.00 0.00 2.57
231 232 4.024218 GCTGACCTTGATGATGCTATGAAC 60.024 45.833 0.00 0.00 0.00 3.18
232 233 5.363562 TGACCTTGATGATGCTATGAACT 57.636 39.130 0.00 0.00 0.00 3.01
233 234 6.484364 TGACCTTGATGATGCTATGAACTA 57.516 37.500 0.00 0.00 0.00 2.24
234 235 6.283694 TGACCTTGATGATGCTATGAACTAC 58.716 40.000 0.00 0.00 0.00 2.73
235 236 6.098838 TGACCTTGATGATGCTATGAACTACT 59.901 38.462 0.00 0.00 0.00 2.57
236 237 7.287696 TGACCTTGATGATGCTATGAACTACTA 59.712 37.037 0.00 0.00 0.00 1.82
237 238 8.023021 ACCTTGATGATGCTATGAACTACTAA 57.977 34.615 0.00 0.00 0.00 2.24
238 239 7.928706 ACCTTGATGATGCTATGAACTACTAAC 59.071 37.037 0.00 0.00 0.00 2.34
239 240 7.928167 CCTTGATGATGCTATGAACTACTAACA 59.072 37.037 0.00 0.00 0.00 2.41
240 241 9.486497 CTTGATGATGCTATGAACTACTAACAT 57.514 33.333 0.00 0.00 0.00 2.71
241 242 9.836864 TTGATGATGCTATGAACTACTAACATT 57.163 29.630 0.00 0.00 0.00 2.71
335 336 3.366070 GCCTTCTTCTTCTTTTAACCGCC 60.366 47.826 0.00 0.00 0.00 6.13
338 339 3.062042 TCTTCTTCTTTTAACCGCCGAC 58.938 45.455 0.00 0.00 0.00 4.79
371 372 5.565592 TCCGGATCATGAAATTTGACTTG 57.434 39.130 0.00 0.00 0.00 3.16
382 383 9.853921 CATGAAATTTGACTTGTTAGCTTTTTC 57.146 29.630 0.00 0.00 0.00 2.29
433 438 4.033587 TGAATACGCAGTTCGGCTTATTTC 59.966 41.667 7.70 3.97 37.78 2.17
434 439 2.094762 ACGCAGTTCGGCTTATTTCT 57.905 45.000 0.00 0.00 37.78 2.52
435 440 3.241067 ACGCAGTTCGGCTTATTTCTA 57.759 42.857 0.00 0.00 37.78 2.10
436 441 3.592059 ACGCAGTTCGGCTTATTTCTAA 58.408 40.909 0.00 0.00 37.78 2.10
437 442 3.998341 ACGCAGTTCGGCTTATTTCTAAA 59.002 39.130 0.00 0.00 37.78 1.85
438 443 4.092968 ACGCAGTTCGGCTTATTTCTAAAG 59.907 41.667 0.00 0.00 37.78 1.85
439 444 4.328983 CGCAGTTCGGCTTATTTCTAAAGA 59.671 41.667 0.00 0.00 33.78 2.52
440 445 5.006746 CGCAGTTCGGCTTATTTCTAAAGAT 59.993 40.000 0.00 0.00 33.78 2.40
441 446 6.200286 CGCAGTTCGGCTTATTTCTAAAGATA 59.800 38.462 0.00 0.00 33.78 1.98
442 447 7.095607 CGCAGTTCGGCTTATTTCTAAAGATAT 60.096 37.037 0.00 0.00 33.78 1.63
443 448 8.224437 GCAGTTCGGCTTATTTCTAAAGATATC 58.776 37.037 0.00 0.00 0.00 1.63
444 449 9.261180 CAGTTCGGCTTATTTCTAAAGATATCA 57.739 33.333 5.32 0.00 0.00 2.15
445 450 9.262358 AGTTCGGCTTATTTCTAAAGATATCAC 57.738 33.333 5.32 0.00 0.00 3.06
446 451 9.262358 GTTCGGCTTATTTCTAAAGATATCACT 57.738 33.333 5.32 0.00 0.00 3.41
447 452 8.818141 TCGGCTTATTTCTAAAGATATCACTG 57.182 34.615 5.32 0.00 0.00 3.66
448 453 8.421784 TCGGCTTATTTCTAAAGATATCACTGT 58.578 33.333 5.32 0.00 0.00 3.55
449 454 9.046296 CGGCTTATTTCTAAAGATATCACTGTT 57.954 33.333 5.32 0.00 0.00 3.16
505 510 4.400251 TGATGATGAGCATTGGAGGTTTTC 59.600 41.667 0.00 0.00 37.34 2.29
510 515 4.947645 TGAGCATTGGAGGTTTTCTTTTG 58.052 39.130 0.00 0.00 0.00 2.44
641 649 8.224389 ACACAAAATTTATGGATCATGATCGA 57.776 30.769 25.60 23.30 38.69 3.59
642 650 8.853126 ACACAAAATTTATGGATCATGATCGAT 58.147 29.630 28.95 28.95 39.20 3.59
876 897 0.795358 CGTATGCAGTGACGCACGTA 60.795 55.000 4.42 1.43 46.56 3.57
877 898 0.638746 GTATGCAGTGACGCACGTAC 59.361 55.000 4.42 2.04 46.56 3.67
879 900 1.008875 ATGCAGTGACGCACGTACTG 61.009 55.000 19.35 19.35 46.56 2.74
932 954 4.574599 ATGTCTGGAGTTGTTTTGAAGC 57.425 40.909 0.00 0.00 0.00 3.86
933 955 3.620488 TGTCTGGAGTTGTTTTGAAGCT 58.380 40.909 0.00 0.00 0.00 3.74
934 956 4.776349 TGTCTGGAGTTGTTTTGAAGCTA 58.224 39.130 0.00 0.00 0.00 3.32
935 957 4.816385 TGTCTGGAGTTGTTTTGAAGCTAG 59.184 41.667 0.00 0.00 0.00 3.42
1007 1047 3.857052 TCAGTTAAGGTAGAATGGCGTG 58.143 45.455 0.00 0.00 0.00 5.34
1176 1232 1.721664 CTCGGCATGCAATCCACTGG 61.722 60.000 21.36 0.00 0.00 4.00
1191 1247 5.531122 TCCACTGGCTGTATATCTGTTAC 57.469 43.478 0.00 0.00 0.00 2.50
1196 1252 8.803235 CCACTGGCTGTATATCTGTTACTATTA 58.197 37.037 0.00 0.00 0.00 0.98
1219 1275 2.093500 AGACTGATGAAATAGTGGCGCA 60.093 45.455 10.83 0.00 0.00 6.09
1222 1278 1.334556 TGATGAAATAGTGGCGCATGC 59.665 47.619 10.83 7.91 41.71 4.06
1223 1279 1.334556 GATGAAATAGTGGCGCATGCA 59.665 47.619 19.57 0.00 45.35 3.96
1380 1442 1.153168 GGGGTACGATGCACATGCT 60.153 57.895 5.31 0.00 42.66 3.79
1390 1462 1.660167 TGCACATGCTCTACTCATGC 58.340 50.000 5.31 0.00 43.71 4.06
1444 1518 1.798735 GCAATCTCATGCACGCACT 59.201 52.632 0.00 0.00 45.70 4.40
1445 1519 0.169672 GCAATCTCATGCACGCACTT 59.830 50.000 0.00 0.00 45.70 3.16
1457 1531 3.854459 GCACTTACGCGCTCTGGC 61.854 66.667 5.73 0.48 0.00 4.85
1597 1680 1.371558 GCCGACTTCTTCACCTGGT 59.628 57.895 0.00 0.00 0.00 4.00
1599 1682 0.679505 CCGACTTCTTCACCTGGTCA 59.320 55.000 0.00 0.00 0.00 4.02
1602 1685 1.416401 GACTTCTTCACCTGGTCACCA 59.584 52.381 0.00 0.00 0.00 4.17
1626 1709 2.478831 GAGCCGTTCCATCTCATCTTC 58.521 52.381 0.00 0.00 0.00 2.87
1639 1722 3.620374 TCTCATCTTCGACTACACGTACC 59.380 47.826 0.00 0.00 34.70 3.34
1640 1723 3.603532 TCATCTTCGACTACACGTACCT 58.396 45.455 0.00 0.00 34.70 3.08
1641 1724 3.620374 TCATCTTCGACTACACGTACCTC 59.380 47.826 0.00 0.00 34.70 3.85
1642 1725 3.325293 TCTTCGACTACACGTACCTCT 57.675 47.619 0.00 0.00 34.70 3.69
1643 1726 4.456280 TCTTCGACTACACGTACCTCTA 57.544 45.455 0.00 0.00 34.70 2.43
1644 1727 4.177026 TCTTCGACTACACGTACCTCTAC 58.823 47.826 0.00 0.00 34.70 2.59
1645 1728 2.893637 TCGACTACACGTACCTCTACC 58.106 52.381 0.00 0.00 34.70 3.18
1646 1729 1.590238 CGACTACACGTACCTCTACCG 59.410 57.143 0.00 0.00 0.00 4.02
1647 1730 2.735444 CGACTACACGTACCTCTACCGA 60.735 54.545 0.00 0.00 0.00 4.69
1648 1731 2.605366 GACTACACGTACCTCTACCGAC 59.395 54.545 0.00 0.00 0.00 4.79
1649 1732 1.936547 CTACACGTACCTCTACCGACC 59.063 57.143 0.00 0.00 0.00 4.79
1650 1733 0.036732 ACACGTACCTCTACCGACCA 59.963 55.000 0.00 0.00 0.00 4.02
1651 1734 1.340405 ACACGTACCTCTACCGACCAT 60.340 52.381 0.00 0.00 0.00 3.55
1656 1739 2.519771 ACCTCTACCGACCATACACA 57.480 50.000 0.00 0.00 0.00 3.72
1661 1744 3.276857 TCTACCGACCATACACACTCTC 58.723 50.000 0.00 0.00 0.00 3.20
1663 1746 0.100682 CCGACCATACACACTCTCCG 59.899 60.000 0.00 0.00 0.00 4.63
1667 1750 3.276857 GACCATACACACTCTCCGACTA 58.723 50.000 0.00 0.00 0.00 2.59
1672 1755 5.356190 CCATACACACTCTCCGACTACTAAA 59.644 44.000 0.00 0.00 0.00 1.85
1673 1756 4.762956 ACACACTCTCCGACTACTAAAC 57.237 45.455 0.00 0.00 0.00 2.01
1676 1759 5.154932 CACACTCTCCGACTACTAAACAAG 58.845 45.833 0.00 0.00 0.00 3.16
1678 1761 5.181622 ACACTCTCCGACTACTAAACAAGAG 59.818 44.000 0.00 0.00 36.08 2.85
1682 1765 7.446625 ACTCTCCGACTACTAAACAAGAGTTAA 59.553 37.037 0.00 0.00 39.21 2.01
1683 1766 8.345724 TCTCCGACTACTAAACAAGAGTTAAT 57.654 34.615 0.00 0.00 36.84 1.40
1684 1767 8.800332 TCTCCGACTACTAAACAAGAGTTAATT 58.200 33.333 0.00 0.00 36.84 1.40
1708 1791 8.713737 TTAATAGCTATGCTTATGCTCTCATG 57.286 34.615 7.09 0.00 40.44 3.07
1711 1794 5.806818 AGCTATGCTTATGCTCTCATGATT 58.193 37.500 0.00 0.00 33.89 2.57
1713 1796 7.392418 AGCTATGCTTATGCTCTCATGATTAA 58.608 34.615 0.00 0.00 33.89 1.40
1714 1797 7.881751 AGCTATGCTTATGCTCTCATGATTAAA 59.118 33.333 0.00 0.00 33.89 1.52
1717 1800 8.631480 ATGCTTATGCTCTCATGATTAAATCA 57.369 30.769 0.00 0.00 41.04 2.57
1718 1801 8.454570 TGCTTATGCTCTCATGATTAAATCAA 57.545 30.769 0.00 0.00 40.53 2.57
1719 1802 8.905850 TGCTTATGCTCTCATGATTAAATCAAA 58.094 29.630 0.00 0.00 40.53 2.69
1720 1803 9.178427 GCTTATGCTCTCATGATTAAATCAAAC 57.822 33.333 0.00 0.00 38.36 2.93
1842 1944 3.731431 TCACCCTCATGTACCTGGTAAT 58.269 45.455 8.40 2.23 0.00 1.89
1843 1945 3.709653 TCACCCTCATGTACCTGGTAATC 59.290 47.826 8.40 0.00 0.00 1.75
1844 1946 3.454447 CACCCTCATGTACCTGGTAATCA 59.546 47.826 8.40 3.80 0.00 2.57
1845 1947 3.454812 ACCCTCATGTACCTGGTAATCAC 59.545 47.826 8.40 0.00 0.00 3.06
1846 1948 3.181454 CCCTCATGTACCTGGTAATCACC 60.181 52.174 8.40 0.00 46.00 4.02
1867 1970 5.424252 CACCCACTAATCCTACCACTAAGAA 59.576 44.000 0.00 0.00 0.00 2.52
1868 1971 5.661759 ACCCACTAATCCTACCACTAAGAAG 59.338 44.000 0.00 0.00 0.00 2.85
1869 1972 5.070580 CCCACTAATCCTACCACTAAGAAGG 59.929 48.000 0.00 0.00 0.00 3.46
1870 1973 5.070580 CCACTAATCCTACCACTAAGAAGGG 59.929 48.000 0.00 0.00 0.00 3.95
1872 1975 6.041069 CACTAATCCTACCACTAAGAAGGGAG 59.959 46.154 0.00 0.00 35.49 4.30
1873 1976 4.628661 ATCCTACCACTAAGAAGGGAGT 57.371 45.455 0.00 0.00 33.76 3.85
1874 1977 5.745988 ATCCTACCACTAAGAAGGGAGTA 57.254 43.478 0.00 0.00 33.76 2.59
1875 1978 5.745988 TCCTACCACTAAGAAGGGAGTAT 57.254 43.478 0.00 0.00 33.76 2.12
1876 1979 6.853669 TCCTACCACTAAGAAGGGAGTATA 57.146 41.667 0.00 0.00 33.76 1.47
1928 2069 6.124340 TCAACCTTCTAATGATCATGCATGT 58.876 36.000 25.43 13.42 0.00 3.21
1929 2070 6.038936 TCAACCTTCTAATGATCATGCATGTG 59.961 38.462 25.43 11.51 0.00 3.21
2022 2169 9.125026 ACATCCCTGCTAATTTTCAATTACTAG 57.875 33.333 0.00 0.00 0.00 2.57
2061 2208 3.606595 TGAGAGAGACAGAAATGCCAG 57.393 47.619 0.00 0.00 0.00 4.85
2063 2210 3.056250 TGAGAGAGACAGAAATGCCAGTC 60.056 47.826 0.00 0.00 0.00 3.51
2076 2223 4.574674 ATGCCAGTCCTTCATTTCACTA 57.425 40.909 0.00 0.00 0.00 2.74
2086 2247 5.408299 TCCTTCATTTCACTATTGTCACGTG 59.592 40.000 9.94 9.94 0.00 4.49
2107 2268 1.140589 CAGCTACGAGGAGGTGCTG 59.859 63.158 1.24 0.00 43.71 4.41
2129 2290 2.190578 CCCTGGGCTTCGTCATCC 59.809 66.667 0.00 0.00 0.00 3.51
2140 2301 2.800881 TCGTCATCCAATCCATCGAG 57.199 50.000 0.00 0.00 0.00 4.04
2152 2313 1.135112 TCCATCGAGGACAATGACGTG 60.135 52.381 0.00 0.00 43.07 4.49
2155 2316 2.444624 CGAGGACAATGACGTGGCG 61.445 63.158 0.00 0.00 0.00 5.69
2175 2336 0.101759 GTCGAGCCACGCAAGGTATA 59.898 55.000 0.00 0.00 46.39 1.47
2178 2339 2.823747 TCGAGCCACGCAAGGTATATAT 59.176 45.455 0.00 0.00 46.39 0.86
2180 2341 4.643334 TCGAGCCACGCAAGGTATATATAT 59.357 41.667 0.00 0.00 46.39 0.86
2181 2342 4.740205 CGAGCCACGCAAGGTATATATATG 59.260 45.833 5.44 0.00 46.39 1.78
2182 2343 4.442706 AGCCACGCAAGGTATATATATGC 58.557 43.478 5.44 3.86 46.39 3.14
2183 2344 3.560068 GCCACGCAAGGTATATATATGCC 59.440 47.826 19.26 19.26 46.39 4.40
2184 2345 4.127171 CCACGCAAGGTATATATATGCCC 58.873 47.826 22.19 13.63 46.39 5.36
2185 2346 4.383661 CCACGCAAGGTATATATATGCCCA 60.384 45.833 22.19 0.00 46.39 5.36
2186 2347 4.811024 CACGCAAGGTATATATATGCCCAG 59.189 45.833 22.19 16.77 46.39 4.45
2187 2348 4.469945 ACGCAAGGTATATATATGCCCAGT 59.530 41.667 22.19 15.19 46.39 4.00
2188 2349 5.050490 CGCAAGGTATATATATGCCCAGTC 58.950 45.833 22.19 10.91 39.00 3.51
2189 2350 5.395214 CGCAAGGTATATATATGCCCAGTCA 60.395 44.000 22.19 0.00 39.00 3.41
2191 2352 6.127054 GCAAGGTATATATATGCCCAGTCAGA 60.127 42.308 22.19 0.00 39.00 3.27
2194 2355 7.852263 AGGTATATATATGCCCAGTCAGAAAC 58.148 38.462 22.19 1.51 39.00 2.78
2196 2357 8.100791 GGTATATATATGCCCAGTCAGAAACAA 58.899 37.037 16.81 0.00 32.98 2.83
2199 2360 5.841957 ATATGCCCAGTCAGAAACAATTC 57.158 39.130 0.00 0.00 35.70 2.17
2211 2372 5.559148 AGAAACAATTCTGGACAGAGTCT 57.441 39.130 1.92 0.00 44.25 3.24
2213 2374 6.459923 AGAAACAATTCTGGACAGAGTCTAC 58.540 40.000 1.92 0.00 44.25 2.59
2214 2375 6.268847 AGAAACAATTCTGGACAGAGTCTACT 59.731 38.462 1.92 0.00 44.25 2.57
2215 2376 5.398603 ACAATTCTGGACAGAGTCTACTG 57.601 43.478 1.92 0.00 42.78 2.74
2216 2377 7.952816 GAAACAATTCTGGACAGAGTCTACTGT 60.953 40.741 1.92 0.00 41.46 3.55
2229 2390 7.786114 CAGAGTCTACTGTTAGTATACGTAGC 58.214 42.308 0.08 0.00 34.25 3.58
2234 2395 8.177663 GTCTACTGTTAGTATACGTAGCAACAA 58.822 37.037 0.08 0.00 29.08 2.83
2247 2408 4.201685 CGTAGCAACAATTACAGGCTGTAC 60.202 45.833 26.21 13.17 36.10 2.90
2271 2432 2.213499 ACAGTGTGTGTTAGCTTCAGC 58.787 47.619 0.00 0.00 34.94 4.26
2277 2438 2.618709 GTGTGTTAGCTTCAGCCAGTTT 59.381 45.455 0.00 0.00 43.38 2.66
2295 2456 4.805192 CAGTTTGTTCAAAACATGTCCAGG 59.195 41.667 0.00 0.00 41.79 4.45
2301 2478 5.654650 TGTTCAAAACATGTCCAGGTAACTT 59.345 36.000 0.00 0.00 40.61 2.66
2315 2492 4.600692 GGTAACTTCAGGTGGCAAATTT 57.399 40.909 0.00 0.00 0.00 1.82
2316 2493 4.956085 GGTAACTTCAGGTGGCAAATTTT 58.044 39.130 0.00 0.00 0.00 1.82
2317 2494 4.749598 GGTAACTTCAGGTGGCAAATTTTG 59.250 41.667 4.72 4.72 0.00 2.44
2355 2532 2.568546 TTCAGGGGCTGGAGAAGATA 57.431 50.000 0.00 0.00 31.51 1.98
2421 2598 2.625790 AGACGTGCCCTCTGATAATCTC 59.374 50.000 0.00 0.00 0.00 2.75
2432 2609 7.419634 GCCCTCTGATAATCTCTAGTTTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2489 2666 1.279271 GGTTACAGTGGAGAGGCATGT 59.721 52.381 0.00 0.00 0.00 3.21
2505 2706 3.558505 GCATGTCATGACACAACACTTC 58.441 45.455 30.09 4.74 45.05 3.01
2588 2792 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
2589 2793 2.977169 GTGTGTGTGTGTGTGTGTTTTC 59.023 45.455 0.00 0.00 0.00 2.29
2591 2795 3.058570 TGTGTGTGTGTGTGTGTTTTCTC 60.059 43.478 0.00 0.00 0.00 2.87
2592 2796 3.188460 GTGTGTGTGTGTGTGTTTTCTCT 59.812 43.478 0.00 0.00 0.00 3.10
2594 2798 4.158384 GTGTGTGTGTGTGTTTTCTCTTG 58.842 43.478 0.00 0.00 0.00 3.02
2595 2799 4.068599 TGTGTGTGTGTGTTTTCTCTTGA 58.931 39.130 0.00 0.00 0.00 3.02
2596 2800 4.154015 TGTGTGTGTGTGTTTTCTCTTGAG 59.846 41.667 0.00 0.00 0.00 3.02
2597 2801 4.154195 GTGTGTGTGTGTTTTCTCTTGAGT 59.846 41.667 0.00 0.00 0.00 3.41
2601 2807 6.961554 GTGTGTGTGTTTTCTCTTGAGTAAAG 59.038 38.462 3.29 0.00 37.22 1.85
2611 2817 9.490379 TTTTCTCTTGAGTAAAGTATCCTTCAC 57.510 33.333 0.00 0.00 37.18 3.18
2635 2841 1.878775 GTGAACCATGTGGCTCAGC 59.121 57.895 5.42 0.00 40.60 4.26
2649 2855 1.891150 GCTCAGCCATGGGATTTATGG 59.109 52.381 15.13 0.00 46.28 2.74
2659 2865 4.085357 TGGGATTTATGGATTGGTCTCG 57.915 45.455 0.00 0.00 0.00 4.04
2666 2872 2.198827 TGGATTGGTCTCGCACATTT 57.801 45.000 0.00 0.00 0.00 2.32
2667 2873 2.513753 TGGATTGGTCTCGCACATTTT 58.486 42.857 0.00 0.00 0.00 1.82
2668 2874 2.228582 TGGATTGGTCTCGCACATTTTG 59.771 45.455 0.00 0.00 0.00 2.44
2686 2892 1.538047 TGCTTGTTTGAGATCAGGGC 58.462 50.000 0.00 0.00 0.00 5.19
2710 2916 8.185505 GGCAACAAATATCCGAGTAATGTTTTA 58.814 33.333 0.00 0.00 0.00 1.52
2736 2942 4.408182 AGTTGCTCTTCACACAAGTAGT 57.592 40.909 0.00 0.00 0.00 2.73
2748 2954 2.096762 CACAAGTAGTGCACACATCACG 60.097 50.000 21.04 3.43 42.15 4.35
2816 3022 4.601019 CATCATTATTGGCGTTGTCTTCC 58.399 43.478 0.00 0.00 0.00 3.46
2840 3046 4.098807 GGAAGTAACCAAGTCAAAAAGCCA 59.901 41.667 0.00 0.00 0.00 4.75
3023 3229 2.892374 CATGTGATTACAGCCGACTCA 58.108 47.619 0.00 0.00 40.79 3.41
3086 3300 8.420222 CCATCTAGAACCATCCATCATATCTAC 58.580 40.741 0.00 0.00 0.00 2.59
3100 3314 8.940952 CCATCATATCTACTTTTAGGCTTTAGC 58.059 37.037 0.00 0.00 41.14 3.09
3393 3612 7.994425 TGAAAAGGCTTTCATAGTATTGTGA 57.006 32.000 13.76 0.00 44.76 3.58
3419 3638 5.947566 ACCTCTTCTAGTCTTCTAAGTGACC 59.052 44.000 0.00 0.00 34.02 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.054576 ACGGAGGGAGTATCTAGGAGAA 58.945 50.000 0.00 0.00 33.73 2.87
1 2 2.703947 ACGGAGGGAGTATCTAGGAGA 58.296 52.381 0.00 0.00 33.73 3.71
2 3 3.414269 GAACGGAGGGAGTATCTAGGAG 58.586 54.545 0.00 0.00 33.73 3.69
3 4 2.107901 GGAACGGAGGGAGTATCTAGGA 59.892 54.545 0.00 0.00 33.73 2.94
4 5 2.108601 AGGAACGGAGGGAGTATCTAGG 59.891 54.545 0.00 0.00 33.73 3.02
5 6 3.512219 AGGAACGGAGGGAGTATCTAG 57.488 52.381 0.00 0.00 33.73 2.43
6 7 5.393068 TTTAGGAACGGAGGGAGTATCTA 57.607 43.478 0.00 0.00 33.73 1.98
7 8 3.967467 TTAGGAACGGAGGGAGTATCT 57.033 47.619 0.00 0.00 33.73 1.98
8 9 6.854091 ATATTTAGGAACGGAGGGAGTATC 57.146 41.667 0.00 0.00 0.00 2.24
9 10 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
10 11 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
11 12 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
12 13 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
13 14 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
14 15 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
15 16 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
19 20 9.845305 CGCTAAAAAGACTTATATTTAGGAACG 57.155 33.333 15.06 9.28 36.39 3.95
42 43 8.120465 CCGTATGTAGTTCATTTTAAAATCGCT 58.880 33.333 10.53 10.83 37.91 4.93
43 44 8.117988 TCCGTATGTAGTTCATTTTAAAATCGC 58.882 33.333 10.53 4.51 37.91 4.58
91 92 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
92 93 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
93 94 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
94 95 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
95 96 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
96 97 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
97 98 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
98 99 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
99 100 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
100 101 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
101 102 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
102 103 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
103 104 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
104 105 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
105 106 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
106 107 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
107 108 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
108 109 5.069914 ACAATATGGACTACATACGGAGCAA 59.930 40.000 0.00 0.00 44.41 3.91
109 110 4.587262 ACAATATGGACTACATACGGAGCA 59.413 41.667 0.00 0.00 44.41 4.26
110 111 4.923871 CACAATATGGACTACATACGGAGC 59.076 45.833 0.00 0.00 44.41 4.70
139 140 9.169592 CCGTTCCTAAATATAAGTCTTTTTGGA 57.830 33.333 0.00 0.00 34.13 3.53
140 141 9.169592 TCCGTTCCTAAATATAAGTCTTTTTGG 57.830 33.333 0.00 0.00 0.00 3.28
142 143 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
143 144 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
144 145 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
145 146 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
146 147 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
147 148 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
148 149 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
149 150 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
150 151 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
151 152 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
152 153 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
153 154 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
154 155 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
155 156 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
156 157 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
157 158 3.011032 AGTTTCTACTCCCTCCGTTCCTA 59.989 47.826 0.00 0.00 0.00 2.94
158 159 2.177734 GTTTCTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
159 160 2.177734 AGTTTCTACTCCCTCCGTTCC 58.822 52.381 0.00 0.00 0.00 3.62
160 161 4.015764 ACTAGTTTCTACTCCCTCCGTTC 58.984 47.826 0.00 0.00 35.78 3.95
161 162 4.044946 ACTAGTTTCTACTCCCTCCGTT 57.955 45.455 0.00 0.00 35.78 4.44
162 163 3.735720 ACTAGTTTCTACTCCCTCCGT 57.264 47.619 0.00 0.00 35.78 4.69
163 164 5.033589 TCTACTAGTTTCTACTCCCTCCG 57.966 47.826 0.00 0.00 35.78 4.63
164 165 5.829391 CCTTCTACTAGTTTCTACTCCCTCC 59.171 48.000 0.00 0.00 35.78 4.30
165 166 6.661777 TCCTTCTACTAGTTTCTACTCCCTC 58.338 44.000 0.00 0.00 35.78 4.30
166 167 6.655376 TCCTTCTACTAGTTTCTACTCCCT 57.345 41.667 0.00 0.00 35.78 4.20
167 168 7.342541 ACATTCCTTCTACTAGTTTCTACTCCC 59.657 40.741 0.00 0.00 35.78 4.30
168 169 8.296211 ACATTCCTTCTACTAGTTTCTACTCC 57.704 38.462 0.00 0.00 35.78 3.85
170 171 9.978336 ACTACATTCCTTCTACTAGTTTCTACT 57.022 33.333 0.00 0.00 38.44 2.57
172 173 9.970553 TGACTACATTCCTTCTACTAGTTTCTA 57.029 33.333 0.00 0.00 0.00 2.10
173 174 8.880991 TGACTACATTCCTTCTACTAGTTTCT 57.119 34.615 0.00 0.00 0.00 2.52
174 175 9.522804 CATGACTACATTCCTTCTACTAGTTTC 57.477 37.037 0.00 0.00 34.15 2.78
175 176 9.036980 ACATGACTACATTCCTTCTACTAGTTT 57.963 33.333 0.00 0.00 34.15 2.66
176 177 8.470805 CACATGACTACATTCCTTCTACTAGTT 58.529 37.037 0.00 0.00 34.15 2.24
177 178 7.068839 CCACATGACTACATTCCTTCTACTAGT 59.931 40.741 0.00 0.00 34.15 2.57
178 179 7.429633 CCACATGACTACATTCCTTCTACTAG 58.570 42.308 0.00 0.00 34.15 2.57
179 180 6.183360 GCCACATGACTACATTCCTTCTACTA 60.183 42.308 0.00 0.00 34.15 1.82
180 181 5.395768 GCCACATGACTACATTCCTTCTACT 60.396 44.000 0.00 0.00 34.15 2.57
181 182 4.811557 GCCACATGACTACATTCCTTCTAC 59.188 45.833 0.00 0.00 34.15 2.59
182 183 4.469586 TGCCACATGACTACATTCCTTCTA 59.530 41.667 0.00 0.00 34.15 2.10
183 184 3.264193 TGCCACATGACTACATTCCTTCT 59.736 43.478 0.00 0.00 34.15 2.85
184 185 3.609853 TGCCACATGACTACATTCCTTC 58.390 45.455 0.00 0.00 34.15 3.46
185 186 3.719268 TGCCACATGACTACATTCCTT 57.281 42.857 0.00 0.00 34.15 3.36
186 187 3.548770 CATGCCACATGACTACATTCCT 58.451 45.455 0.00 0.00 34.15 3.36
187 188 2.620115 CCATGCCACATGACTACATTCC 59.380 50.000 9.10 0.00 34.15 3.01
188 189 2.033801 GCCATGCCACATGACTACATTC 59.966 50.000 9.10 0.00 34.15 2.67
189 190 2.026641 GCCATGCCACATGACTACATT 58.973 47.619 9.10 0.00 34.15 2.71
190 191 1.213678 AGCCATGCCACATGACTACAT 59.786 47.619 9.10 0.00 37.19 2.29
191 192 0.620030 AGCCATGCCACATGACTACA 59.380 50.000 9.10 0.00 0.00 2.74
192 193 1.019673 CAGCCATGCCACATGACTAC 58.980 55.000 9.10 0.00 0.00 2.73
193 194 0.911053 TCAGCCATGCCACATGACTA 59.089 50.000 9.10 0.00 0.00 2.59
194 195 0.679002 GTCAGCCATGCCACATGACT 60.679 55.000 9.10 0.00 37.79 3.41
195 196 1.660560 GGTCAGCCATGCCACATGAC 61.661 60.000 9.10 0.00 39.59 3.06
196 197 1.378911 GGTCAGCCATGCCACATGA 60.379 57.895 9.10 0.00 34.09 3.07
197 198 0.968901 AAGGTCAGCCATGCCACATG 60.969 55.000 0.48 0.48 37.19 3.21
198 199 0.968901 CAAGGTCAGCCATGCCACAT 60.969 55.000 0.00 0.00 37.19 3.21
199 200 1.604308 CAAGGTCAGCCATGCCACA 60.604 57.895 0.00 0.00 37.19 4.17
200 201 0.682209 ATCAAGGTCAGCCATGCCAC 60.682 55.000 0.00 0.00 33.75 5.01
201 202 0.681887 CATCAAGGTCAGCCATGCCA 60.682 55.000 0.00 0.00 33.75 4.92
202 203 0.394762 TCATCAAGGTCAGCCATGCC 60.395 55.000 0.00 0.00 33.75 4.40
203 204 1.337071 CATCATCAAGGTCAGCCATGC 59.663 52.381 0.00 0.00 33.75 4.06
204 205 1.337071 GCATCATCAAGGTCAGCCATG 59.663 52.381 0.00 0.00 37.19 3.66
205 206 1.214673 AGCATCATCAAGGTCAGCCAT 59.785 47.619 0.00 0.00 37.19 4.40
206 207 0.622136 AGCATCATCAAGGTCAGCCA 59.378 50.000 0.00 0.00 37.19 4.75
207 208 2.627515 TAGCATCATCAAGGTCAGCC 57.372 50.000 0.00 0.00 0.00 4.85
208 209 3.736720 TCATAGCATCATCAAGGTCAGC 58.263 45.455 0.00 0.00 0.00 4.26
209 210 5.366460 AGTTCATAGCATCATCAAGGTCAG 58.634 41.667 0.00 0.00 0.00 3.51
210 211 5.363562 AGTTCATAGCATCATCAAGGTCA 57.636 39.130 0.00 0.00 0.00 4.02
211 212 6.520272 AGTAGTTCATAGCATCATCAAGGTC 58.480 40.000 0.00 0.00 0.00 3.85
212 213 6.491714 AGTAGTTCATAGCATCATCAAGGT 57.508 37.500 0.00 0.00 0.00 3.50
213 214 7.928167 TGTTAGTAGTTCATAGCATCATCAAGG 59.072 37.037 0.00 0.00 0.00 3.61
214 215 8.877808 TGTTAGTAGTTCATAGCATCATCAAG 57.122 34.615 0.00 0.00 0.00 3.02
215 216 9.836864 AATGTTAGTAGTTCATAGCATCATCAA 57.163 29.630 0.00 0.00 0.00 2.57
315 316 3.744426 TCGGCGGTTAAAAGAAGAAGAAG 59.256 43.478 7.21 0.00 0.00 2.85
316 317 3.495753 GTCGGCGGTTAAAAGAAGAAGAA 59.504 43.478 7.21 0.00 0.00 2.52
317 318 3.062042 GTCGGCGGTTAAAAGAAGAAGA 58.938 45.455 7.21 0.00 0.00 2.87
318 319 2.159037 GGTCGGCGGTTAAAAGAAGAAG 59.841 50.000 7.21 0.00 0.00 2.85
349 350 5.009631 ACAAGTCAAATTTCATGATCCGGA 58.990 37.500 6.61 6.61 0.00 5.14
359 360 8.648557 AGGAAAAAGCTAACAAGTCAAATTTC 57.351 30.769 0.00 0.00 0.00 2.17
403 408 4.603985 CCGAACTGCGTATTCACATAGTA 58.396 43.478 0.00 0.00 38.67 1.82
415 420 2.094762 AGAAATAAGCCGAACTGCGT 57.905 45.000 0.00 0.00 38.67 5.24
433 438 8.926710 ACACGAGAAAAACAGTGATATCTTTAG 58.073 33.333 3.98 0.00 37.95 1.85
434 439 8.827177 ACACGAGAAAAACAGTGATATCTTTA 57.173 30.769 3.98 0.00 37.95 1.85
435 440 7.730364 ACACGAGAAAAACAGTGATATCTTT 57.270 32.000 3.98 0.00 37.95 2.52
436 441 8.827177 TTACACGAGAAAAACAGTGATATCTT 57.173 30.769 3.98 0.00 37.95 2.40
437 442 8.827177 TTTACACGAGAAAAACAGTGATATCT 57.173 30.769 3.98 0.00 37.95 1.98
442 447 9.658475 CATTTATTTACACGAGAAAAACAGTGA 57.342 29.630 0.00 0.00 37.95 3.41
443 448 9.445786 ACATTTATTTACACGAGAAAAACAGTG 57.554 29.630 0.00 0.00 40.17 3.66
481 486 3.657398 ACCTCCAATGCTCATCATCAA 57.343 42.857 0.00 0.00 33.40 2.57
505 510 8.550376 CATTCTAAATTCACCAACAACCAAAAG 58.450 33.333 0.00 0.00 0.00 2.27
510 515 5.925969 CCACATTCTAAATTCACCAACAACC 59.074 40.000 0.00 0.00 0.00 3.77
844 865 5.092781 CACTGCATACGTGTTTTATTTCCC 58.907 41.667 0.00 0.00 0.00 3.97
851 872 1.070175 GCGTCACTGCATACGTGTTTT 60.070 47.619 15.11 0.00 41.10 2.43
876 897 2.042843 CCGCTCTACCCCTCCAGT 60.043 66.667 0.00 0.00 0.00 4.00
877 898 3.541713 GCCGCTCTACCCCTCCAG 61.542 72.222 0.00 0.00 0.00 3.86
879 900 2.923634 TACTGCCGCTCTACCCCTCC 62.924 65.000 0.00 0.00 0.00 4.30
1191 1247 7.540400 CGCCACTATTTCATCAGTCTCTAATAG 59.460 40.741 0.00 0.00 33.79 1.73
1196 1252 3.739519 GCGCCACTATTTCATCAGTCTCT 60.740 47.826 0.00 0.00 0.00 3.10
1222 1278 1.246056 CCACCCCTCTGCAACACATG 61.246 60.000 0.00 0.00 0.00 3.21
1223 1279 1.075482 CCACCCCTCTGCAACACAT 59.925 57.895 0.00 0.00 0.00 3.21
1370 1432 2.158798 AGCATGAGTAGAGCATGTGCAT 60.159 45.455 7.83 0.00 43.79 3.96
1372 1434 1.598132 CAGCATGAGTAGAGCATGTGC 59.402 52.381 0.00 0.00 43.79 4.57
1390 1462 7.866898 CCATCTCATTTACAGTACATCTCTCAG 59.133 40.741 0.00 0.00 0.00 3.35
1554 1628 3.966026 GAAGGCCACGTCCGACGAG 62.966 68.421 27.03 18.79 46.05 4.18
1576 1659 2.357034 GGTGAAGAAGTCGGCGCA 60.357 61.111 10.83 0.00 0.00 6.09
1597 1680 3.998672 GAACGGCTCCGGTGGTGA 61.999 66.667 13.31 0.00 40.58 4.02
1611 1694 5.038033 GTGTAGTCGAAGATGAGATGGAAC 58.962 45.833 0.00 0.00 40.67 3.62
1626 1709 1.590238 CGGTAGAGGTACGTGTAGTCG 59.410 57.143 0.00 0.00 0.00 4.18
1639 1722 3.280295 AGAGTGTGTATGGTCGGTAGAG 58.720 50.000 0.00 0.00 0.00 2.43
1640 1723 3.276857 GAGAGTGTGTATGGTCGGTAGA 58.723 50.000 0.00 0.00 0.00 2.59
1641 1724 2.358267 GGAGAGTGTGTATGGTCGGTAG 59.642 54.545 0.00 0.00 0.00 3.18
1642 1725 2.372264 GGAGAGTGTGTATGGTCGGTA 58.628 52.381 0.00 0.00 0.00 4.02
1643 1726 1.183549 GGAGAGTGTGTATGGTCGGT 58.816 55.000 0.00 0.00 0.00 4.69
1644 1727 0.100682 CGGAGAGTGTGTATGGTCGG 59.899 60.000 0.00 0.00 0.00 4.79
1645 1728 1.092348 TCGGAGAGTGTGTATGGTCG 58.908 55.000 0.00 0.00 0.00 4.79
1646 1729 2.093106 AGTCGGAGAGTGTGTATGGTC 58.907 52.381 0.00 0.00 39.65 4.02
1647 1730 2.217510 AGTCGGAGAGTGTGTATGGT 57.782 50.000 0.00 0.00 39.65 3.55
1648 1731 3.280295 AGTAGTCGGAGAGTGTGTATGG 58.720 50.000 0.00 0.00 42.12 2.74
1649 1732 6.128090 TGTTTAGTAGTCGGAGAGTGTGTATG 60.128 42.308 0.00 0.00 42.12 2.39
1650 1733 5.942236 TGTTTAGTAGTCGGAGAGTGTGTAT 59.058 40.000 0.00 0.00 42.12 2.29
1651 1734 5.308014 TGTTTAGTAGTCGGAGAGTGTGTA 58.692 41.667 0.00 0.00 42.12 2.90
1656 1739 5.315348 ACTCTTGTTTAGTAGTCGGAGAGT 58.685 41.667 0.00 0.00 45.36 3.24
1682 1765 9.327628 CATGAGAGCATAAGCATAGCTATTAAT 57.672 33.333 2.64 0.00 45.49 1.40
1683 1766 8.534496 TCATGAGAGCATAAGCATAGCTATTAA 58.466 33.333 2.64 0.00 45.49 1.40
1684 1767 8.071177 TCATGAGAGCATAAGCATAGCTATTA 57.929 34.615 2.64 0.00 45.49 0.98
1685 1768 6.944096 TCATGAGAGCATAAGCATAGCTATT 58.056 36.000 2.64 0.00 45.49 1.73
1688 1771 4.886496 TCATGAGAGCATAAGCATAGCT 57.114 40.909 0.00 0.00 45.49 3.32
1689 1772 7.606858 TTAATCATGAGAGCATAAGCATAGC 57.393 36.000 0.09 0.00 45.49 2.97
1692 1775 8.631480 TGATTTAATCATGAGAGCATAAGCAT 57.369 30.769 3.20 0.00 37.55 3.79
1694 1777 9.178427 GTTTGATTTAATCATGAGAGCATAAGC 57.822 33.333 8.56 0.00 39.39 3.09
1842 1944 3.484953 AGTGGTAGGATTAGTGGGTGA 57.515 47.619 0.00 0.00 0.00 4.02
1843 1945 4.960469 TCTTAGTGGTAGGATTAGTGGGTG 59.040 45.833 0.00 0.00 0.00 4.61
1844 1946 5.216665 TCTTAGTGGTAGGATTAGTGGGT 57.783 43.478 0.00 0.00 0.00 4.51
1845 1947 5.070580 CCTTCTTAGTGGTAGGATTAGTGGG 59.929 48.000 0.00 0.00 0.00 4.61
1846 1948 5.070580 CCCTTCTTAGTGGTAGGATTAGTGG 59.929 48.000 0.00 0.00 0.00 4.00
1887 1990 9.739276 AGAAGGTTGATTGATATTTACAACTGA 57.261 29.630 0.00 0.00 40.08 3.41
1901 2004 7.034685 TGCATGATCATTAGAAGGTTGATTG 57.965 36.000 5.16 0.00 30.48 2.67
1902 2005 7.287005 ACATGCATGATCATTAGAAGGTTGATT 59.713 33.333 32.75 0.22 30.48 2.57
1905 2008 6.183360 ACACATGCATGATCATTAGAAGGTTG 60.183 38.462 32.75 16.61 0.00 3.77
1906 2009 5.889853 ACACATGCATGATCATTAGAAGGTT 59.110 36.000 32.75 2.07 0.00 3.50
1908 2011 5.758924 CACACATGCATGATCATTAGAAGG 58.241 41.667 32.75 1.77 0.00 3.46
1928 2069 1.881973 GTCTTGAGGCTGAAATGCACA 59.118 47.619 0.00 0.00 34.04 4.57
1929 2070 1.200948 GGTCTTGAGGCTGAAATGCAC 59.799 52.381 0.00 0.00 34.04 4.57
1966 2107 1.136690 CGTGCACTGTCGTGTTGTAT 58.863 50.000 16.19 0.00 43.16 2.29
1983 2124 2.111384 AGGGATGTGATGCTTACTCGT 58.889 47.619 0.00 0.00 0.00 4.18
2022 2169 7.492524 TCTCTCAACACTGTGATGGATTATAC 58.507 38.462 15.86 0.00 0.00 1.47
2061 2208 5.408604 ACGTGACAATAGTGAAATGAAGGAC 59.591 40.000 0.00 0.00 0.00 3.85
2063 2210 5.179368 ACACGTGACAATAGTGAAATGAAGG 59.821 40.000 25.01 0.00 39.04 3.46
2076 2223 1.148310 GTAGCTGCACACGTGACAAT 58.852 50.000 25.01 12.98 0.00 2.71
2086 2247 1.153745 CACCTCCTCGTAGCTGCAC 60.154 63.158 1.02 0.00 0.00 4.57
2140 2301 2.358247 ACCGCCACGTCATTGTCC 60.358 61.111 0.00 0.00 0.00 4.02
2155 2316 2.573609 ATACCTTGCGTGGCTCGACC 62.574 60.000 13.77 0.00 42.86 4.79
2175 2336 7.293073 AGAATTGTTTCTGACTGGGCATATAT 58.707 34.615 0.00 0.00 40.74 0.86
2178 2339 4.922206 AGAATTGTTTCTGACTGGGCATA 58.078 39.130 0.00 0.00 40.74 3.14
2180 2341 3.228188 AGAATTGTTTCTGACTGGGCA 57.772 42.857 0.00 0.00 40.74 5.36
2189 2350 5.559148 AGACTCTGTCCAGAATTGTTTCT 57.441 39.130 0.00 0.00 43.09 2.52
2191 2352 6.183361 ACAGTAGACTCTGTCCAGAATTGTTT 60.183 38.462 0.00 0.00 44.07 2.83
2194 2355 5.398603 ACAGTAGACTCTGTCCAGAATTG 57.601 43.478 0.00 0.00 44.07 2.32
2196 2357 6.249951 ACTAACAGTAGACTCTGTCCAGAAT 58.750 40.000 15.57 0.00 46.25 2.40
2199 2360 7.042590 CGTATACTAACAGTAGACTCTGTCCAG 60.043 44.444 8.87 9.70 46.25 3.86
2204 2365 7.437565 TGCTACGTATACTAACAGTAGACTCTG 59.562 40.741 15.14 0.00 39.91 3.35
2205 2366 7.495901 TGCTACGTATACTAACAGTAGACTCT 58.504 38.462 15.14 0.00 39.91 3.24
2207 2368 7.550551 TGTTGCTACGTATACTAACAGTAGACT 59.449 37.037 15.14 1.06 39.91 3.24
2208 2369 7.688372 TGTTGCTACGTATACTAACAGTAGAC 58.312 38.462 15.14 8.42 38.99 2.59
2209 2370 7.848223 TGTTGCTACGTATACTAACAGTAGA 57.152 36.000 15.14 2.89 37.54 2.59
2210 2371 9.512435 AATTGTTGCTACGTATACTAACAGTAG 57.488 33.333 0.00 6.00 33.66 2.57
2213 2374 9.292846 TGTAATTGTTGCTACGTATACTAACAG 57.707 33.333 0.00 0.00 30.79 3.16
2214 2375 9.292846 CTGTAATTGTTGCTACGTATACTAACA 57.707 33.333 0.00 3.14 0.00 2.41
2215 2376 8.749499 CCTGTAATTGTTGCTACGTATACTAAC 58.251 37.037 0.00 0.51 0.00 2.34
2216 2377 7.436080 GCCTGTAATTGTTGCTACGTATACTAA 59.564 37.037 0.00 0.00 0.00 2.24
2220 2381 5.751509 CAGCCTGTAATTGTTGCTACGTATA 59.248 40.000 0.00 0.00 0.00 1.47
2229 2390 6.269315 TGTTTTGTACAGCCTGTAATTGTTG 58.731 36.000 6.06 0.00 34.21 3.33
2247 2408 4.980590 TGAAGCTAACACACACTGTTTTG 58.019 39.130 0.00 0.00 40.45 2.44
2256 2417 1.884235 ACTGGCTGAAGCTAACACAC 58.116 50.000 1.74 0.00 41.70 3.82
2257 2418 2.618241 CAAACTGGCTGAAGCTAACACA 59.382 45.455 1.74 0.00 41.70 3.72
2258 2419 2.618709 ACAAACTGGCTGAAGCTAACAC 59.381 45.455 1.74 0.00 41.70 3.32
2265 2426 4.493547 TGTTTTGAACAAACTGGCTGAAG 58.506 39.130 0.00 0.00 38.72 3.02
2271 2432 4.753233 TGGACATGTTTTGAACAAACTGG 58.247 39.130 0.00 0.00 45.86 4.00
2277 2438 5.197451 AGTTACCTGGACATGTTTTGAACA 58.803 37.500 0.00 0.00 46.94 3.18
2295 2456 5.905480 CAAAATTTGCCACCTGAAGTTAC 57.095 39.130 0.00 0.00 0.00 2.50
2316 2493 8.956426 CCCTGAAAACAATTAACTAGATTAGCA 58.044 33.333 0.00 0.00 0.00 3.49
2317 2494 8.406297 CCCCTGAAAACAATTAACTAGATTAGC 58.594 37.037 0.00 0.00 0.00 3.09
2318 2495 8.406297 GCCCCTGAAAACAATTAACTAGATTAG 58.594 37.037 0.00 0.00 0.00 1.73
2319 2496 8.113462 AGCCCCTGAAAACAATTAACTAGATTA 58.887 33.333 0.00 0.00 0.00 1.75
2320 2497 6.954102 AGCCCCTGAAAACAATTAACTAGATT 59.046 34.615 0.00 0.00 0.00 2.40
2321 2498 6.378280 CAGCCCCTGAAAACAATTAACTAGAT 59.622 38.462 0.00 0.00 32.44 1.98
2322 2499 5.710099 CAGCCCCTGAAAACAATTAACTAGA 59.290 40.000 0.00 0.00 32.44 2.43
2323 2500 5.105756 CCAGCCCCTGAAAACAATTAACTAG 60.106 44.000 0.00 0.00 32.44 2.57
2324 2501 4.770010 CCAGCCCCTGAAAACAATTAACTA 59.230 41.667 0.00 0.00 32.44 2.24
2325 2502 3.578282 CCAGCCCCTGAAAACAATTAACT 59.422 43.478 0.00 0.00 32.44 2.24
2326 2503 3.576550 TCCAGCCCCTGAAAACAATTAAC 59.423 43.478 0.00 0.00 32.44 2.01
2327 2504 3.831911 CTCCAGCCCCTGAAAACAATTAA 59.168 43.478 0.00 0.00 32.44 1.40
2328 2505 3.075283 TCTCCAGCCCCTGAAAACAATTA 59.925 43.478 0.00 0.00 32.44 1.40
2329 2506 2.158325 TCTCCAGCCCCTGAAAACAATT 60.158 45.455 0.00 0.00 32.44 2.32
2330 2507 1.428912 TCTCCAGCCCCTGAAAACAAT 59.571 47.619 0.00 0.00 32.44 2.71
2331 2508 0.850100 TCTCCAGCCCCTGAAAACAA 59.150 50.000 0.00 0.00 32.44 2.83
2332 2509 0.850100 TTCTCCAGCCCCTGAAAACA 59.150 50.000 0.00 0.00 32.44 2.83
2333 2510 1.073923 TCTTCTCCAGCCCCTGAAAAC 59.926 52.381 0.00 0.00 32.44 2.43
2334 2511 1.444933 TCTTCTCCAGCCCCTGAAAA 58.555 50.000 0.00 0.00 32.44 2.29
2355 2532 0.035458 CCGTCTTCTTCCACCTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
2394 2571 4.504132 GAGGGCACGTCTGATGTC 57.496 61.111 0.00 0.00 40.48 3.06
2404 2581 5.799827 AACTAGAGATTATCAGAGGGCAC 57.200 43.478 0.00 0.00 0.00 5.01
2405 2582 5.305644 GGAAACTAGAGATTATCAGAGGGCA 59.694 44.000 0.00 0.00 0.00 5.36
2568 2772 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
2611 2817 1.705337 GCCACATGGTTCACGATCGG 61.705 60.000 20.98 8.65 37.57 4.18
2635 2841 4.744237 AGACCAATCCATAAATCCCATGG 58.256 43.478 4.14 4.14 43.74 3.66
2641 2847 3.876914 TGTGCGAGACCAATCCATAAATC 59.123 43.478 0.00 0.00 0.00 2.17
2649 2855 2.253603 GCAAAATGTGCGAGACCAATC 58.746 47.619 0.00 0.00 45.10 2.67
2666 2872 1.888512 GCCCTGATCTCAAACAAGCAA 59.111 47.619 0.00 0.00 0.00 3.91
2667 2873 1.202915 TGCCCTGATCTCAAACAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
2668 2874 1.538047 TGCCCTGATCTCAAACAAGC 58.462 50.000 0.00 0.00 0.00 4.01
2669 2875 2.886523 TGTTGCCCTGATCTCAAACAAG 59.113 45.455 0.00 0.00 0.00 3.16
2670 2876 2.942804 TGTTGCCCTGATCTCAAACAA 58.057 42.857 0.00 0.00 0.00 2.83
2672 2878 4.525912 ATTTGTTGCCCTGATCTCAAAC 57.474 40.909 0.00 0.00 0.00 2.93
2674 2880 4.889409 GGATATTTGTTGCCCTGATCTCAA 59.111 41.667 0.00 0.00 0.00 3.02
2677 2883 3.136443 TCGGATATTTGTTGCCCTGATCT 59.864 43.478 0.00 0.00 0.00 2.75
2678 2884 3.476552 TCGGATATTTGTTGCCCTGATC 58.523 45.455 0.00 0.00 0.00 2.92
2679 2885 3.117888 ACTCGGATATTTGTTGCCCTGAT 60.118 43.478 0.00 0.00 0.00 2.90
2686 2892 9.221775 GCTAAAACATTACTCGGATATTTGTTG 57.778 33.333 0.00 0.00 0.00 3.33
2736 2942 2.164491 CATCTGCGTGATGTGTGCA 58.836 52.632 10.30 0.00 45.55 4.57
2748 2954 2.010145 TTCGTGAGGTTAGCATCTGC 57.990 50.000 0.00 0.00 42.49 4.26
2816 3022 4.287720 GCTTTTTGACTTGGTTACTTCCG 58.712 43.478 0.00 0.00 0.00 4.30
2840 3046 5.629125 AGGCTCAAGAGAGAAACTTTTGAT 58.371 37.500 0.32 0.00 44.69 2.57
2973 3179 6.037610 CAGATTCCCCTTTTATGTTCTCTTCG 59.962 42.308 0.00 0.00 0.00 3.79
3007 3213 3.186909 CGAATTGAGTCGGCTGTAATCA 58.813 45.455 0.00 0.00 37.37 2.57
3023 3229 5.596772 TCCTTTTTCTTTTCTCCACCGAATT 59.403 36.000 0.00 0.00 0.00 2.17
3086 3300 3.552604 TTGCACGCTAAAGCCTAAAAG 57.447 42.857 0.00 0.00 37.91 2.27
3100 3314 3.621715 GGAGGGAGTAACTTATTTGCACG 59.378 47.826 0.00 0.00 0.00 5.34
3199 3416 8.218338 AGCAATCCTACATCAAATTCTGTTAG 57.782 34.615 0.00 0.00 0.00 2.34
3393 3612 7.776500 GGTCACTTAGAAGACTAGAAGAGGTAT 59.224 40.741 0.00 0.00 35.18 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.