Multiple sequence alignment - TraesCS5D01G530600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G530600 chr5D 100.000 4421 0 0 1 4421 546686753 546691173 0.000000e+00 8165.0
1 TraesCS5D01G530600 chr5D 79.898 2348 440 20 1090 3412 241271666 241274006 0.000000e+00 1692.0
2 TraesCS5D01G530600 chr4A 92.670 3820 205 36 4 3781 622238982 622235196 0.000000e+00 5433.0
3 TraesCS5D01G530600 chr4A 74.581 775 185 10 2364 3135 465543984 465544749 3.300000e-86 329.0
4 TraesCS5D01G530600 chr4A 91.935 124 8 2 4253 4375 622235077 622234955 5.880000e-39 172.0
5 TraesCS5D01G530600 chr4A 79.668 241 39 10 3991 4225 286747845 286747609 9.840000e-37 165.0
6 TraesCS5D01G530600 chr5B 89.425 2714 244 23 877 3557 689997851 689995148 0.000000e+00 3382.0
7 TraesCS5D01G530600 chr5B 79.974 2347 440 18 1090 3412 262356923 262354583 0.000000e+00 1703.0
8 TraesCS5D01G530600 chr5B 93.239 355 22 2 4 356 689998633 689998279 5.070000e-144 521.0
9 TraesCS5D01G530600 chr5B 89.163 203 18 4 676 876 689998087 689997887 2.640000e-62 250.0
10 TraesCS5D01G530600 chr5B 86.747 166 15 3 409 574 689998283 689998125 1.260000e-40 178.0
11 TraesCS5D01G530600 chr5A 80.034 2349 433 22 1091 3412 310984590 310986929 0.000000e+00 1707.0
12 TraesCS5D01G530600 chr5A 79.661 236 38 9 4007 4237 535518748 535518518 1.270000e-35 161.0
13 TraesCS5D01G530600 chr4D 74.840 779 184 10 2363 3138 111589139 111588370 4.230000e-90 342.0
14 TraesCS5D01G530600 chr4D 80.800 250 43 2 3993 4241 420511895 420511650 1.620000e-44 191.0
15 TraesCS5D01G530600 chr4B 74.198 779 189 10 2363 3138 172381604 172380835 9.230000e-82 315.0
16 TraesCS5D01G530600 chr3D 85.308 211 29 2 3991 4201 606610855 606610647 2.680000e-52 217.0
17 TraesCS5D01G530600 chr3B 82.927 205 33 2 3991 4195 815205534 815205332 2.720000e-42 183.0
18 TraesCS5D01G530600 chr3B 78.295 258 45 10 3992 4244 538815844 538816095 5.920000e-34 156.0
19 TraesCS5D01G530600 chr2D 79.608 255 45 6 3993 4244 405617875 405617625 4.540000e-40 176.0
20 TraesCS5D01G530600 chr2D 100.000 28 0 0 3778 3805 617129721 617129748 8.000000e-03 52.8
21 TraesCS5D01G530600 chr7A 79.661 236 42 5 3991 4224 247179555 247179324 9.840000e-37 165.0
22 TraesCS5D01G530600 chr6B 78.740 254 46 7 3988 4237 81010777 81010528 3.540000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G530600 chr5D 546686753 546691173 4420 False 8165.00 8165 100.0000 1 4421 1 chr5D.!!$F2 4420
1 TraesCS5D01G530600 chr5D 241271666 241274006 2340 False 1692.00 1692 79.8980 1090 3412 1 chr5D.!!$F1 2322
2 TraesCS5D01G530600 chr4A 622234955 622238982 4027 True 2802.50 5433 92.3025 4 4375 2 chr4A.!!$R2 4371
3 TraesCS5D01G530600 chr4A 465543984 465544749 765 False 329.00 329 74.5810 2364 3135 1 chr4A.!!$F1 771
4 TraesCS5D01G530600 chr5B 262354583 262356923 2340 True 1703.00 1703 79.9740 1090 3412 1 chr5B.!!$R1 2322
5 TraesCS5D01G530600 chr5B 689995148 689998633 3485 True 1082.75 3382 89.6435 4 3557 4 chr5B.!!$R2 3553
6 TraesCS5D01G530600 chr5A 310984590 310986929 2339 False 1707.00 1707 80.0340 1091 3412 1 chr5A.!!$F1 2321
7 TraesCS5D01G530600 chr4D 111588370 111589139 769 True 342.00 342 74.8400 2363 3138 1 chr4D.!!$R1 775
8 TraesCS5D01G530600 chr4B 172380835 172381604 769 True 315.00 315 74.1980 2363 3138 1 chr4B.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 350 0.039527 GATCCCAAAACGGTGTGCAC 60.040 55.0 10.75 10.75 0.0 4.57 F
938 979 0.255604 CACCCTGTATGCATCCACCA 59.744 55.0 0.19 0.00 0.0 4.17 F
1520 1592 0.323629 CCTACAACCCGGTCACATGT 59.676 55.0 0.00 0.00 0.0 3.21 F
3190 3277 0.325933 TGGTTCAGATGCAGAGGTGG 59.674 55.0 0.00 0.00 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1278 0.179094 AGACGACGGTTTTGTCTGCA 60.179 50.0 9.78 0.0 46.04 4.41 R
2822 2903 1.022735 CCAGTCCAGCAAGATGATGC 58.977 55.0 0.00 0.0 46.78 3.91 R
3285 3372 0.029834 GCACATAGCTGAATTGCCCG 59.970 55.0 0.00 0.0 41.15 6.13 R
4401 4534 0.170561 CAAGCAAGCTCATGTCCTGC 59.829 55.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.029838 ATGACTGCATCTCCCGTTTC 57.970 50.000 0.00 0.00 0.00 2.78
161 162 3.430895 GGCGAGAATACGTGAAAACAAGA 59.569 43.478 0.00 0.00 35.59 3.02
206 207 6.892310 GGTGTACTATAACCGACGAAAAAT 57.108 37.500 0.00 0.00 0.00 1.82
218 219 4.316102 CCGACGAAAAATGTCAAAAACACG 60.316 41.667 0.00 0.00 41.75 4.49
223 224 7.564988 ACGAAAAATGTCAAAAACACGAAAAA 58.435 26.923 0.00 0.00 41.75 1.94
277 278 1.884464 CGGATCCACTGGACATGCG 60.884 63.158 13.41 0.00 32.98 4.73
310 311 7.563924 TGTAGTAACCATTTACTAGGATCTGCT 59.436 37.037 4.82 0.00 46.79 4.24
333 335 4.195416 GGACCTTGAATGTCTTGAGATCC 58.805 47.826 0.84 0.00 33.22 3.36
348 350 0.039527 GATCCCAAAACGGTGTGCAC 60.040 55.000 10.75 10.75 0.00 4.57
384 386 5.138125 TCCTGAAAAGGATGAAACAATGC 57.862 39.130 0.00 0.00 32.09 3.56
386 388 4.020839 CCTGAAAAGGATGAAACAATGCCT 60.021 41.667 0.00 0.00 0.00 4.75
402 404 4.650972 ATGCCTTTTGTACTGGTAGGAA 57.349 40.909 0.00 0.00 0.00 3.36
463 466 8.414629 AAAGCTTAATTTCTTCTCACTTGGAT 57.585 30.769 0.00 0.00 0.00 3.41
467 470 9.167311 GCTTAATTTCTTCTCACTTGGATAAGA 57.833 33.333 0.00 0.00 37.06 2.10
473 476 5.540337 TCTTCTCACTTGGATAAGACACACT 59.460 40.000 0.00 0.00 34.77 3.55
475 478 5.784177 TCTCACTTGGATAAGACACACTTC 58.216 41.667 0.00 0.00 39.72 3.01
483 486 6.119536 TGGATAAGACACACTTCACAAAGTT 58.880 36.000 0.00 0.00 43.28 2.66
535 538 5.625311 CGCAGTATTTTTCAACTTTCTCCAC 59.375 40.000 0.00 0.00 0.00 4.02
574 577 8.319143 GTGGCTTGTATTATTCCACGTATTAT 57.681 34.615 0.00 0.00 37.96 1.28
575 578 9.426837 GTGGCTTGTATTATTCCACGTATTATA 57.573 33.333 0.00 0.00 37.96 0.98
628 631 7.744087 AAGCAAGTTAACATCACAGTTATGA 57.256 32.000 8.61 0.00 34.25 2.15
651 654 9.683069 ATGAAAATAGACTGTTTTGACAATGAC 57.317 29.630 13.90 0.00 0.00 3.06
656 659 5.380043 AGACTGTTTTGACAATGACCTGAT 58.620 37.500 0.00 0.00 0.00 2.90
660 663 6.075762 TGTTTTGACAATGACCTGATTCTG 57.924 37.500 0.00 0.00 0.00 3.02
661 664 5.009911 TGTTTTGACAATGACCTGATTCTGG 59.990 40.000 7.96 7.96 0.00 3.86
665 668 2.295885 CAATGACCTGATTCTGGCTCC 58.704 52.381 9.34 0.98 0.00 4.70
684 687 2.503895 CTGAAGCCAGGTCAAATCCT 57.496 50.000 0.00 0.00 36.77 3.24
880 920 2.475487 GTCGAACTTGGTCTACTTGCAC 59.525 50.000 0.00 0.00 0.00 4.57
938 979 0.255604 CACCCTGTATGCATCCACCA 59.744 55.000 0.19 0.00 0.00 4.17
1041 1089 1.180456 TGCTTGCCACCACTTCCATG 61.180 55.000 0.00 0.00 0.00 3.66
1204 1267 3.632189 GCCTTCACATTTTCGATATGGC 58.368 45.455 11.38 0.00 0.00 4.40
1250 1313 1.741401 TCTGGAGTGCAAATCGCGG 60.741 57.895 6.13 0.00 46.97 6.46
1312 1375 1.611673 GGGATGGCAATATGGTCCTCG 60.612 57.143 0.00 0.00 0.00 4.63
1347 1410 2.028043 GTTGTGTGGCAAGCTGGC 59.972 61.111 3.79 3.79 44.03 4.85
1359 1431 4.389576 GCTGGCGGCAACTTCACG 62.390 66.667 14.48 0.00 41.35 4.35
1371 1443 3.791789 GCAACTTCACGAATGTTCAGCAA 60.792 43.478 0.00 0.00 0.00 3.91
1520 1592 0.323629 CCTACAACCCGGTCACATGT 59.676 55.000 0.00 0.00 0.00 3.21
1770 1842 5.365314 AGGGATTAAGAGAAGGCTAACTCTG 59.635 44.000 19.74 0.00 41.77 3.35
1845 1917 3.193267 GGTCAGTTTCAATGGCAGCAATA 59.807 43.478 0.00 0.00 0.00 1.90
1968 2040 1.280998 CCGGGTAATTGGACTGAAGGT 59.719 52.381 0.00 0.00 0.00 3.50
2071 2143 4.438472 GCTCTGATCAGAAACATTTGCTCC 60.438 45.833 25.09 0.00 36.94 4.70
2208 2280 1.202830 ACCTACCCAACAAACGATGCA 60.203 47.619 0.00 0.00 0.00 3.96
2234 2306 6.517362 CGGACAATATATCTCAAGCTTCCTGA 60.517 42.308 0.00 0.00 0.00 3.86
2458 2539 5.590259 TGGTTCTTTGTTTTGAGAAGAGAGG 59.410 40.000 0.00 0.00 32.91 3.69
2682 2763 1.270826 GGCAAAGAAGAGTTCCAAGCC 59.729 52.381 0.00 0.00 34.50 4.35
2796 2877 0.603569 ATGTCGAGAACGGCTCACTT 59.396 50.000 8.07 2.34 44.93 3.16
2812 2893 4.145876 TCACTTGCTAGCATTTTGTTCG 57.854 40.909 20.13 5.22 0.00 3.95
2817 2898 3.081061 TGCTAGCATTTTGTTCGGTGAT 58.919 40.909 14.93 0.00 0.00 3.06
2820 2901 5.182190 TGCTAGCATTTTGTTCGGTGATAAA 59.818 36.000 14.93 0.00 0.00 1.40
2821 2902 6.090129 GCTAGCATTTTGTTCGGTGATAAAA 58.910 36.000 10.63 0.00 0.00 1.52
2822 2903 6.251376 GCTAGCATTTTGTTCGGTGATAAAAG 59.749 38.462 10.63 0.00 0.00 2.27
2823 2904 4.923281 AGCATTTTGTTCGGTGATAAAAGC 59.077 37.500 0.00 0.00 0.00 3.51
2824 2905 4.683781 GCATTTTGTTCGGTGATAAAAGCA 59.316 37.500 0.00 0.00 0.00 3.91
2825 2906 5.348451 GCATTTTGTTCGGTGATAAAAGCAT 59.652 36.000 0.00 0.00 0.00 3.79
3190 3277 0.325933 TGGTTCAGATGCAGAGGTGG 59.674 55.000 0.00 0.00 0.00 4.61
3199 3286 1.126948 TGCAGAGGTGGACATGGTGA 61.127 55.000 0.00 0.00 0.00 4.02
3231 3318 4.690184 TGTCACAATGCTTGCAGATAAG 57.310 40.909 0.87 0.00 0.00 1.73
3261 3348 7.966339 AGGAAATGATGAATCTTGGATTGAA 57.034 32.000 0.00 0.00 0.00 2.69
3285 3372 2.181954 TTGTGGATTGCAAATTGGGC 57.818 45.000 1.71 0.00 0.00 5.36
3369 3456 5.105675 GGAAGATACAAGAAAGAGGTCGACT 60.106 44.000 16.46 0.90 0.00 4.18
3401 3488 6.096141 TCTGTTGTTCAGACTCTCCTATCATC 59.904 42.308 0.00 0.00 46.77 2.92
3417 3504 8.198807 TCCTATCATCTGATGAAGCTGATAAA 57.801 34.615 22.91 0.00 41.30 1.40
3493 3613 7.801716 TTATTGTAAGGTCAAGGATGTATGC 57.198 36.000 0.00 0.00 0.00 3.14
3497 3617 1.831106 AGGTCAAGGATGTATGCGTGA 59.169 47.619 0.00 0.00 34.70 4.35
3514 3634 3.000825 GCGTGAAACAATGTGGAAAAACC 59.999 43.478 0.00 0.00 35.74 3.27
3581 3705 4.028131 AGACCGATGGTAATAAGTGTGGA 58.972 43.478 0.00 0.00 35.25 4.02
3598 3722 5.086104 TGTGGAACAGATTAGTAAGAGCC 57.914 43.478 0.00 0.00 45.67 4.70
3599 3723 4.113354 GTGGAACAGATTAGTAAGAGCCG 58.887 47.826 0.00 0.00 41.80 5.52
3600 3724 3.124560 GGAACAGATTAGTAAGAGCCGC 58.875 50.000 0.00 0.00 0.00 6.53
3601 3725 3.430374 GGAACAGATTAGTAAGAGCCGCA 60.430 47.826 0.00 0.00 0.00 5.69
3602 3726 3.444703 ACAGATTAGTAAGAGCCGCAG 57.555 47.619 0.00 0.00 0.00 5.18
3607 3731 2.295253 TAGTAAGAGCCGCAGAAAGC 57.705 50.000 0.00 0.00 40.87 3.51
3617 3741 1.154395 GCAGAAAGCGAAAGACGGC 60.154 57.895 0.00 0.00 42.83 5.68
3618 3742 1.841663 GCAGAAAGCGAAAGACGGCA 61.842 55.000 0.00 0.00 42.83 5.69
3619 3743 0.110644 CAGAAAGCGAAAGACGGCAC 60.111 55.000 0.00 0.00 42.83 5.01
3621 3745 0.384353 GAAAGCGAAAGACGGCACAC 60.384 55.000 0.00 0.00 42.83 3.82
3623 3747 1.498865 AAGCGAAAGACGGCACACTG 61.499 55.000 0.00 0.00 42.83 3.66
3625 3749 1.594293 CGAAAGACGGCACACTGGT 60.594 57.895 0.00 0.00 38.46 4.00
3631 3755 1.635663 GACGGCACACTGGTACATGC 61.636 60.000 0.00 0.00 40.71 4.06
3632 3756 1.670730 CGGCACACTGGTACATGCA 60.671 57.895 0.00 0.00 42.94 3.96
3636 3760 1.896220 CACACTGGTACATGCAAGGT 58.104 50.000 0.00 0.00 38.20 3.50
3639 3763 1.806542 CACTGGTACATGCAAGGTCAC 59.193 52.381 0.00 0.00 38.20 3.67
3642 3766 1.619332 TGGTACATGCAAGGTCACGTA 59.381 47.619 0.00 0.00 28.09 3.57
3647 3771 3.466836 ACATGCAAGGTCACGTATATGG 58.533 45.455 0.00 0.00 0.00 2.74
3651 3775 3.055747 TGCAAGGTCACGTATATGGTTGA 60.056 43.478 0.00 0.00 0.00 3.18
3666 3790 2.682352 TGGTTGACATCAGTGTGTTGTG 59.318 45.455 0.00 0.00 39.09 3.33
3677 3801 5.185454 TCAGTGTGTTGTGTCTTGATTTCT 58.815 37.500 0.00 0.00 0.00 2.52
3679 3803 6.992123 TCAGTGTGTTGTGTCTTGATTTCTAT 59.008 34.615 0.00 0.00 0.00 1.98
3689 3813 8.260818 TGTGTCTTGATTTCTATCCTTAAGAGG 58.739 37.037 3.36 0.00 45.02 3.69
3708 3834 1.487558 GGAAAAATGCCAGGCCATGAT 59.512 47.619 9.64 0.00 0.00 2.45
3714 3840 1.473258 TGCCAGGCCATGATTTACAC 58.527 50.000 9.64 0.00 0.00 2.90
3721 3847 5.105228 CCAGGCCATGATTTACACTTTGAAT 60.105 40.000 5.01 0.00 0.00 2.57
3748 3874 1.092921 TGTCGCGTCCAGCTTTGTTT 61.093 50.000 5.77 0.00 45.59 2.83
3761 3887 4.324402 CAGCTTTGTTTGCCTTTAATAGCG 59.676 41.667 0.00 0.00 0.00 4.26
3775 3904 6.649141 CCTTTAATAGCGCTTATGTGTATCCA 59.351 38.462 18.68 0.00 0.00 3.41
3781 3910 6.300354 AGCGCTTATGTGTATCCAAATTAC 57.700 37.500 2.64 0.00 0.00 1.89
3782 3911 6.055588 AGCGCTTATGTGTATCCAAATTACT 58.944 36.000 2.64 0.00 0.00 2.24
3783 3912 6.202954 AGCGCTTATGTGTATCCAAATTACTC 59.797 38.462 2.64 0.00 0.00 2.59
3784 3913 6.565999 GCGCTTATGTGTATCCAAATTACTCC 60.566 42.308 0.00 0.00 0.00 3.85
3785 3914 6.073222 CGCTTATGTGTATCCAAATTACTCCC 60.073 42.308 0.00 0.00 0.00 4.30
3786 3915 6.998673 GCTTATGTGTATCCAAATTACTCCCT 59.001 38.462 0.00 0.00 0.00 4.20
3787 3916 7.502561 GCTTATGTGTATCCAAATTACTCCCTT 59.497 37.037 0.00 0.00 0.00 3.95
3788 3917 8.974060 TTATGTGTATCCAAATTACTCCCTTC 57.026 34.615 0.00 0.00 0.00 3.46
3789 3918 5.424757 TGTGTATCCAAATTACTCCCTTCG 58.575 41.667 0.00 0.00 0.00 3.79
3790 3919 5.188163 TGTGTATCCAAATTACTCCCTTCGA 59.812 40.000 0.00 0.00 0.00 3.71
3791 3920 6.126883 TGTGTATCCAAATTACTCCCTTCGAT 60.127 38.462 0.00 0.00 0.00 3.59
3792 3921 6.424207 GTGTATCCAAATTACTCCCTTCGATC 59.576 42.308 0.00 0.00 0.00 3.69
3793 3922 4.417426 TCCAAATTACTCCCTTCGATCC 57.583 45.455 0.00 0.00 0.00 3.36
3794 3923 3.778075 TCCAAATTACTCCCTTCGATCCA 59.222 43.478 0.00 0.00 0.00 3.41
3795 3924 3.877508 CCAAATTACTCCCTTCGATCCAC 59.122 47.826 0.00 0.00 0.00 4.02
3796 3925 4.513442 CAAATTACTCCCTTCGATCCACA 58.487 43.478 0.00 0.00 0.00 4.17
3797 3926 5.126067 CAAATTACTCCCTTCGATCCACAT 58.874 41.667 0.00 0.00 0.00 3.21
3798 3927 5.373812 AATTACTCCCTTCGATCCACATT 57.626 39.130 0.00 0.00 0.00 2.71
3799 3928 6.494666 AATTACTCCCTTCGATCCACATTA 57.505 37.500 0.00 0.00 0.00 1.90
3800 3929 5.943349 TTACTCCCTTCGATCCACATTAA 57.057 39.130 0.00 0.00 0.00 1.40
3801 3930 6.494666 TTACTCCCTTCGATCCACATTAAT 57.505 37.500 0.00 0.00 0.00 1.40
3802 3931 5.373812 ACTCCCTTCGATCCACATTAATT 57.626 39.130 0.00 0.00 0.00 1.40
3803 3932 5.126067 ACTCCCTTCGATCCACATTAATTG 58.874 41.667 0.00 0.00 0.00 2.32
3804 3933 5.110814 TCCCTTCGATCCACATTAATTGT 57.889 39.130 0.00 0.00 39.91 2.71
3805 3934 5.123227 TCCCTTCGATCCACATTAATTGTC 58.877 41.667 0.00 0.00 36.00 3.18
3806 3935 4.881273 CCCTTCGATCCACATTAATTGTCA 59.119 41.667 0.00 0.00 36.00 3.58
3807 3936 5.532406 CCCTTCGATCCACATTAATTGTCAT 59.468 40.000 0.00 0.00 36.00 3.06
3808 3937 6.710295 CCCTTCGATCCACATTAATTGTCATA 59.290 38.462 0.00 0.00 36.00 2.15
3809 3938 7.228507 CCCTTCGATCCACATTAATTGTCATAA 59.771 37.037 0.00 0.00 36.00 1.90
3810 3939 8.070171 CCTTCGATCCACATTAATTGTCATAAC 58.930 37.037 0.00 0.00 36.00 1.89
3811 3940 8.731275 TTCGATCCACATTAATTGTCATAACT 57.269 30.769 0.00 0.00 36.00 2.24
3812 3941 8.731275 TCGATCCACATTAATTGTCATAACTT 57.269 30.769 0.00 0.00 36.00 2.66
3813 3942 9.173021 TCGATCCACATTAATTGTCATAACTTT 57.827 29.630 0.00 0.00 36.00 2.66
3840 3969 9.921637 AGTACAAACATTGTATTAAAACCATGG 57.078 29.630 11.19 11.19 46.73 3.66
3841 3970 7.665561 ACAAACATTGTATTAAAACCATGGC 57.334 32.000 13.04 0.00 43.27 4.40
3842 3971 7.220030 ACAAACATTGTATTAAAACCATGGCA 58.780 30.769 13.04 0.00 43.27 4.92
3843 3972 7.716998 ACAAACATTGTATTAAAACCATGGCAA 59.283 29.630 13.04 5.60 43.27 4.52
3844 3973 8.728833 CAAACATTGTATTAAAACCATGGCAAT 58.271 29.630 13.04 7.87 29.13 3.56
3845 3974 8.860780 AACATTGTATTAAAACCATGGCAATT 57.139 26.923 13.04 7.08 29.13 2.32
3846 3975 9.950496 AACATTGTATTAAAACCATGGCAATTA 57.050 25.926 13.04 6.02 29.13 1.40
3847 3976 9.950496 ACATTGTATTAAAACCATGGCAATTAA 57.050 25.926 13.04 14.65 29.13 1.40
3897 4026 7.724305 TTAAATCGATCTAATGTAGGGTTGC 57.276 36.000 0.00 0.00 0.00 4.17
3906 4039 8.910351 ATCTAATGTAGGGTTGCTAAAAGATC 57.090 34.615 0.00 0.00 0.00 2.75
3908 4041 8.494433 TCTAATGTAGGGTTGCTAAAAGATCAT 58.506 33.333 0.00 0.00 0.00 2.45
3992 4125 6.913873 TGTTCTCTAAAGTTTACGCAAAGT 57.086 33.333 0.00 0.00 0.00 2.66
3993 4126 8.422973 TTGTTCTCTAAAGTTTACGCAAAGTA 57.577 30.769 0.00 0.00 0.00 2.24
3994 4127 7.844482 TGTTCTCTAAAGTTTACGCAAAGTAC 58.156 34.615 0.00 0.00 34.56 2.73
3995 4128 7.707893 TGTTCTCTAAAGTTTACGCAAAGTACT 59.292 33.333 0.00 0.00 34.56 2.73
3996 4129 7.864307 TCTCTAAAGTTTACGCAAAGTACTC 57.136 36.000 0.00 0.00 34.56 2.59
3997 4130 6.580041 TCTCTAAAGTTTACGCAAAGTACTCG 59.420 38.462 0.00 0.00 34.56 4.18
3998 4131 3.783111 AAGTTTACGCAAAGTACTCGC 57.217 42.857 0.00 1.01 34.56 5.03
3999 4132 3.022607 AGTTTACGCAAAGTACTCGCT 57.977 42.857 13.58 5.49 34.56 4.93
4000 4133 2.985139 AGTTTACGCAAAGTACTCGCTC 59.015 45.455 13.58 0.00 34.56 5.03
4001 4134 2.710220 TTACGCAAAGTACTCGCTCA 57.290 45.000 13.58 1.14 34.56 4.26
4002 4135 2.257974 TACGCAAAGTACTCGCTCAG 57.742 50.000 13.58 3.36 0.00 3.35
4003 4136 0.314302 ACGCAAAGTACTCGCTCAGT 59.686 50.000 13.58 3.88 39.41 3.41
4004 4137 1.269621 ACGCAAAGTACTCGCTCAGTT 60.270 47.619 13.58 0.00 36.43 3.16
4005 4138 1.792949 CGCAAAGTACTCGCTCAGTTT 59.207 47.619 13.58 0.00 36.43 2.66
4006 4139 2.159960 CGCAAAGTACTCGCTCAGTTTC 60.160 50.000 13.58 0.00 36.43 2.78
4007 4140 3.060602 GCAAAGTACTCGCTCAGTTTCT 58.939 45.455 9.43 0.00 36.43 2.52
4008 4141 3.495001 GCAAAGTACTCGCTCAGTTTCTT 59.505 43.478 9.43 0.00 36.43 2.52
4009 4142 4.024809 GCAAAGTACTCGCTCAGTTTCTTT 60.025 41.667 9.43 8.41 37.97 2.52
4010 4143 5.504173 GCAAAGTACTCGCTCAGTTTCTTTT 60.504 40.000 9.43 0.00 36.64 2.27
4011 4144 6.487103 CAAAGTACTCGCTCAGTTTCTTTTT 58.513 36.000 0.00 0.00 36.64 1.94
4012 4145 7.627340 CAAAGTACTCGCTCAGTTTCTTTTTA 58.373 34.615 0.00 0.00 36.64 1.52
4013 4146 6.766452 AGTACTCGCTCAGTTTCTTTTTAC 57.234 37.500 0.00 0.00 36.43 2.01
4014 4147 6.514063 AGTACTCGCTCAGTTTCTTTTTACT 58.486 36.000 0.00 0.00 36.43 2.24
4015 4148 6.985059 AGTACTCGCTCAGTTTCTTTTTACTT 59.015 34.615 0.00 0.00 36.43 2.24
4016 4149 6.288426 ACTCGCTCAGTTTCTTTTTACTTC 57.712 37.500 0.00 0.00 26.56 3.01
4017 4150 5.050972 ACTCGCTCAGTTTCTTTTTACTTCG 60.051 40.000 0.00 0.00 26.56 3.79
4018 4151 3.900703 CGCTCAGTTTCTTTTTACTTCGC 59.099 43.478 0.00 0.00 0.00 4.70
4019 4152 3.900703 GCTCAGTTTCTTTTTACTTCGCG 59.099 43.478 0.00 0.00 0.00 5.87
4020 4153 4.552184 GCTCAGTTTCTTTTTACTTCGCGT 60.552 41.667 5.77 0.00 0.00 6.01
4021 4154 5.332808 GCTCAGTTTCTTTTTACTTCGCGTA 60.333 40.000 5.77 0.00 0.00 4.42
4022 4155 6.617953 GCTCAGTTTCTTTTTACTTCGCGTAT 60.618 38.462 5.77 0.00 0.00 3.06
4023 4156 7.181143 TCAGTTTCTTTTTACTTCGCGTATT 57.819 32.000 5.77 0.00 0.00 1.89
4024 4157 8.296799 TCAGTTTCTTTTTACTTCGCGTATTA 57.703 30.769 5.77 0.00 0.00 0.98
4025 4158 8.430063 TCAGTTTCTTTTTACTTCGCGTATTAG 58.570 33.333 5.77 2.30 0.00 1.73
4026 4159 8.430063 CAGTTTCTTTTTACTTCGCGTATTAGA 58.570 33.333 5.77 0.00 0.00 2.10
4027 4160 9.148104 AGTTTCTTTTTACTTCGCGTATTAGAT 57.852 29.630 5.77 0.00 0.00 1.98
4028 4161 9.750882 GTTTCTTTTTACTTCGCGTATTAGATT 57.249 29.630 5.77 0.00 0.00 2.40
4030 4163 9.749490 TTCTTTTTACTTCGCGTATTAGATTTG 57.251 29.630 5.77 0.00 0.00 2.32
4031 4164 8.928733 TCTTTTTACTTCGCGTATTAGATTTGT 58.071 29.630 5.77 0.00 0.00 2.83
4032 4165 9.537848 CTTTTTACTTCGCGTATTAGATTTGTT 57.462 29.630 5.77 0.00 0.00 2.83
4033 4166 9.532697 TTTTTACTTCGCGTATTAGATTTGTTC 57.467 29.630 5.77 0.00 0.00 3.18
4034 4167 7.815398 TTACTTCGCGTATTAGATTTGTTCA 57.185 32.000 5.77 0.00 0.00 3.18
4035 4168 6.715344 ACTTCGCGTATTAGATTTGTTCAA 57.285 33.333 5.77 0.00 0.00 2.69
4036 4169 7.124347 ACTTCGCGTATTAGATTTGTTCAAA 57.876 32.000 5.77 0.44 0.00 2.69
4037 4170 7.234384 ACTTCGCGTATTAGATTTGTTCAAAG 58.766 34.615 5.77 0.00 0.00 2.77
4038 4171 6.715344 TCGCGTATTAGATTTGTTCAAAGT 57.285 33.333 5.77 0.00 0.00 2.66
4039 4172 6.758149 TCGCGTATTAGATTTGTTCAAAGTC 58.242 36.000 5.77 3.06 0.00 3.01
4040 4173 6.366604 TCGCGTATTAGATTTGTTCAAAGTCA 59.633 34.615 5.77 0.00 0.00 3.41
4041 4174 7.012943 CGCGTATTAGATTTGTTCAAAGTCAA 58.987 34.615 0.00 0.00 0.00 3.18
4042 4175 7.532546 CGCGTATTAGATTTGTTCAAAGTCAAA 59.467 33.333 0.00 0.00 37.82 2.69
4043 4176 9.341899 GCGTATTAGATTTGTTCAAAGTCAAAT 57.658 29.630 4.37 3.34 43.81 2.32
4063 4196 9.620660 GTCAAATATCGTAAACTTTGACCAAAT 57.379 29.630 13.37 0.00 45.88 2.32
4104 4237 8.604640 TCGACATTTACAATACCAAGTAAACA 57.395 30.769 0.00 0.00 41.40 2.83
4105 4238 9.221933 TCGACATTTACAATACCAAGTAAACAT 57.778 29.630 0.00 0.00 41.40 2.71
4163 4296 9.503427 TGATATTGATATCGTATCGTGAATGTC 57.497 33.333 16.73 9.22 41.55 3.06
4164 4297 9.503427 GATATTGATATCGTATCGTGAATGTCA 57.497 33.333 10.43 0.00 30.89 3.58
4165 4298 9.855021 ATATTGATATCGTATCGTGAATGTCAA 57.145 29.630 0.00 0.00 0.00 3.18
4166 4299 8.763049 ATTGATATCGTATCGTGAATGTCAAT 57.237 30.769 0.00 0.00 0.00 2.57
4167 4300 9.855021 ATTGATATCGTATCGTGAATGTCAATA 57.145 29.630 0.00 0.00 0.00 1.90
4168 4301 9.685828 TTGATATCGTATCGTGAATGTCAATAA 57.314 29.630 0.00 0.00 0.00 1.40
4169 4302 9.855021 TGATATCGTATCGTGAATGTCAATAAT 57.145 29.630 0.00 0.00 0.00 1.28
4174 4307 9.908152 TCGTATCGTGAATGTCAATAATATTCT 57.092 29.630 0.00 0.00 36.66 2.40
4217 4350 5.895636 TGAAGAGTTTGACTTCAGCAAAA 57.104 34.783 0.00 0.00 45.44 2.44
4218 4351 5.640732 TGAAGAGTTTGACTTCAGCAAAAC 58.359 37.500 0.00 0.00 45.44 2.43
4219 4352 4.639135 AGAGTTTGACTTCAGCAAAACC 57.361 40.909 0.00 0.00 37.03 3.27
4220 4353 4.273318 AGAGTTTGACTTCAGCAAAACCT 58.727 39.130 0.00 0.00 37.03 3.50
4221 4354 5.437060 AGAGTTTGACTTCAGCAAAACCTA 58.563 37.500 0.00 0.00 37.03 3.08
4222 4355 5.885912 AGAGTTTGACTTCAGCAAAACCTAA 59.114 36.000 0.00 0.00 37.03 2.69
4223 4356 6.547510 AGAGTTTGACTTCAGCAAAACCTAAT 59.452 34.615 0.00 0.00 37.03 1.73
4224 4357 6.507023 AGTTTGACTTCAGCAAAACCTAATG 58.493 36.000 0.00 0.00 37.03 1.90
4225 4358 4.503741 TGACTTCAGCAAAACCTAATGC 57.496 40.909 0.00 0.00 42.87 3.56
4226 4359 3.058293 TGACTTCAGCAAAACCTAATGCG 60.058 43.478 0.00 0.00 46.98 4.73
4227 4360 2.253603 CTTCAGCAAAACCTAATGCGC 58.746 47.619 0.00 0.00 46.98 6.09
4228 4361 1.242989 TCAGCAAAACCTAATGCGCA 58.757 45.000 14.96 14.96 46.98 6.09
4229 4362 1.199789 TCAGCAAAACCTAATGCGCAG 59.800 47.619 18.32 4.18 46.98 5.18
4230 4363 1.199789 CAGCAAAACCTAATGCGCAGA 59.800 47.619 18.32 5.27 46.98 4.26
4231 4364 1.470098 AGCAAAACCTAATGCGCAGAG 59.530 47.619 18.32 15.64 46.98 3.35
4232 4365 1.200020 GCAAAACCTAATGCGCAGAGT 59.800 47.619 18.32 7.44 32.17 3.24
4233 4366 2.418628 GCAAAACCTAATGCGCAGAGTA 59.581 45.455 18.32 7.16 32.17 2.59
4234 4367 3.119990 GCAAAACCTAATGCGCAGAGTAA 60.120 43.478 18.32 0.00 32.17 2.24
4235 4368 4.614993 GCAAAACCTAATGCGCAGAGTAAA 60.615 41.667 18.32 0.00 32.17 2.01
4236 4369 5.457140 CAAAACCTAATGCGCAGAGTAAAA 58.543 37.500 18.32 0.00 0.00 1.52
4237 4370 4.946784 AACCTAATGCGCAGAGTAAAAG 57.053 40.909 18.32 5.11 0.00 2.27
4238 4371 4.202245 ACCTAATGCGCAGAGTAAAAGA 57.798 40.909 18.32 0.00 0.00 2.52
4239 4372 4.575885 ACCTAATGCGCAGAGTAAAAGAA 58.424 39.130 18.32 0.00 0.00 2.52
4240 4373 5.001232 ACCTAATGCGCAGAGTAAAAGAAA 58.999 37.500 18.32 0.00 0.00 2.52
4241 4374 5.472137 ACCTAATGCGCAGAGTAAAAGAAAA 59.528 36.000 18.32 0.00 0.00 2.29
4242 4375 5.795441 CCTAATGCGCAGAGTAAAAGAAAAC 59.205 40.000 18.32 0.00 0.00 2.43
4243 4376 3.619233 TGCGCAGAGTAAAAGAAAACC 57.381 42.857 5.66 0.00 0.00 3.27
4244 4377 2.946329 TGCGCAGAGTAAAAGAAAACCA 59.054 40.909 5.66 0.00 0.00 3.67
4245 4378 3.378742 TGCGCAGAGTAAAAGAAAACCAA 59.621 39.130 5.66 0.00 0.00 3.67
4246 4379 4.037446 TGCGCAGAGTAAAAGAAAACCAAT 59.963 37.500 5.66 0.00 0.00 3.16
4247 4380 5.239744 TGCGCAGAGTAAAAGAAAACCAATA 59.760 36.000 5.66 0.00 0.00 1.90
4248 4381 5.795441 GCGCAGAGTAAAAGAAAACCAATAG 59.205 40.000 0.30 0.00 0.00 1.73
4249 4382 6.567891 GCGCAGAGTAAAAGAAAACCAATAGT 60.568 38.462 0.30 0.00 0.00 2.12
4250 4383 6.797033 CGCAGAGTAAAAGAAAACCAATAGTG 59.203 38.462 0.00 0.00 0.00 2.74
4251 4384 7.519970 CGCAGAGTAAAAGAAAACCAATAGTGT 60.520 37.037 0.00 0.00 0.00 3.55
4268 4401 9.832445 CCAATAGTGTATATATATGGTTGTCCC 57.168 37.037 5.44 0.00 0.00 4.46
4273 4406 8.816894 AGTGTATATATATGGTTGTCCCTCAAG 58.183 37.037 5.44 0.00 36.66 3.02
4275 4408 9.560860 TGTATATATATGGTTGTCCCTCAAGAT 57.439 33.333 5.44 0.00 36.66 2.40
4288 4421 5.864474 GTCCCTCAAGATATATTGTGCTACG 59.136 44.000 9.77 0.00 0.00 3.51
4375 4508 4.202141 CCAGTTTTGAATCTCACTTTGCCA 60.202 41.667 0.00 0.00 0.00 4.92
4376 4509 5.350633 CAGTTTTGAATCTCACTTTGCCAA 58.649 37.500 0.00 0.00 0.00 4.52
4377 4510 5.461078 CAGTTTTGAATCTCACTTTGCCAAG 59.539 40.000 0.00 0.00 35.92 3.61
4378 4511 3.648339 TTGAATCTCACTTTGCCAAGC 57.352 42.857 0.00 0.00 32.57 4.01
4379 4512 1.536766 TGAATCTCACTTTGCCAAGCG 59.463 47.619 0.00 0.00 32.57 4.68
4380 4513 0.883833 AATCTCACTTTGCCAAGCGG 59.116 50.000 0.00 0.00 32.57 5.52
4390 4523 4.680237 CCAAGCGGCGGTCAGTGA 62.680 66.667 13.68 0.00 0.00 3.41
4391 4524 2.664851 CAAGCGGCGGTCAGTGAA 60.665 61.111 13.68 0.00 0.00 3.18
4392 4525 2.110213 AAGCGGCGGTCAGTGAAA 59.890 55.556 13.68 0.00 0.00 2.69
4393 4526 2.251642 AAGCGGCGGTCAGTGAAAC 61.252 57.895 13.68 0.00 0.00 2.78
4406 4539 1.519408 GTGAAACTTAAGCGGCAGGA 58.481 50.000 1.45 0.00 0.00 3.86
4407 4540 1.197036 GTGAAACTTAAGCGGCAGGAC 59.803 52.381 1.45 0.00 0.00 3.85
4408 4541 1.202710 TGAAACTTAAGCGGCAGGACA 60.203 47.619 1.45 0.00 0.00 4.02
4409 4542 2.084546 GAAACTTAAGCGGCAGGACAT 58.915 47.619 1.45 0.00 0.00 3.06
4410 4543 1.453155 AACTTAAGCGGCAGGACATG 58.547 50.000 1.45 0.00 0.00 3.21
4411 4544 0.613260 ACTTAAGCGGCAGGACATGA 59.387 50.000 0.00 0.00 0.00 3.07
4412 4545 1.293924 CTTAAGCGGCAGGACATGAG 58.706 55.000 0.00 0.00 0.00 2.90
4413 4546 0.744414 TTAAGCGGCAGGACATGAGC 60.744 55.000 0.00 0.00 35.23 4.26
4414 4547 1.617018 TAAGCGGCAGGACATGAGCT 61.617 55.000 0.00 4.97 43.38 4.09
4415 4548 2.437359 GCGGCAGGACATGAGCTT 60.437 61.111 0.00 0.00 33.14 3.74
4416 4549 2.758089 GCGGCAGGACATGAGCTTG 61.758 63.158 0.00 0.00 33.14 4.01
4417 4550 2.758089 CGGCAGGACATGAGCTTGC 61.758 63.158 15.26 15.26 0.00 4.01
4418 4551 1.378250 GGCAGGACATGAGCTTGCT 60.378 57.895 20.05 0.00 35.23 3.91
4419 4552 0.964358 GGCAGGACATGAGCTTGCTT 60.964 55.000 20.05 0.00 35.23 3.91
4420 4553 0.170561 GCAGGACATGAGCTTGCTTG 59.829 55.000 15.95 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.053295 GCCAATAAACATGCAAGCATAGG 58.947 43.478 7.29 0.00 34.91 2.57
161 162 2.626266 GTTTTGGGGTCTCGGAACAATT 59.374 45.455 0.00 0.00 0.00 2.32
205 206 4.160626 TCCCCTTTTTCGTGTTTTTGACAT 59.839 37.500 0.00 0.00 41.10 3.06
206 207 3.510360 TCCCCTTTTTCGTGTTTTTGACA 59.490 39.130 0.00 0.00 35.42 3.58
218 219 3.958147 TGTCCTGAAAACTCCCCTTTTTC 59.042 43.478 1.44 1.44 41.44 2.29
223 224 1.636003 GGATGTCCTGAAAACTCCCCT 59.364 52.381 0.00 0.00 0.00 4.79
277 278 9.578439 CCTAGTAAATGGTTACTACAGTGTTAC 57.422 37.037 0.00 0.00 46.59 2.50
310 311 4.323792 GGATCTCAAGACATTCAAGGTCCA 60.324 45.833 0.00 0.00 37.24 4.02
333 335 0.102120 ATGTGTGCACACCGTTTTGG 59.898 50.000 39.34 0.00 45.88 3.28
348 350 7.792032 TCCTTTTCAGGAGGTATAACTATGTG 58.208 38.462 0.00 0.00 45.20 3.21
384 386 4.903045 TCCTTCCTACCAGTACAAAAGG 57.097 45.455 0.00 0.00 34.44 3.11
386 388 6.697641 AAGATCCTTCCTACCAGTACAAAA 57.302 37.500 0.00 0.00 0.00 2.44
402 404 3.051940 TCAGCATGGTCCTAAGATCCT 57.948 47.619 0.00 0.00 36.16 3.24
453 456 5.406780 GTGAAGTGTGTCTTATCCAAGTGAG 59.593 44.000 0.00 0.00 36.40 3.51
457 460 6.260936 ACTTTGTGAAGTGTGTCTTATCCAAG 59.739 38.462 0.00 0.00 44.27 3.61
463 466 5.584649 CCTCAACTTTGTGAAGTGTGTCTTA 59.415 40.000 0.00 0.00 45.18 2.10
467 470 2.423538 GCCTCAACTTTGTGAAGTGTGT 59.576 45.455 0.00 0.00 45.18 3.72
468 471 2.423185 TGCCTCAACTTTGTGAAGTGTG 59.577 45.455 0.00 0.00 45.18 3.82
473 476 3.181467 CCCATTTGCCTCAACTTTGTGAA 60.181 43.478 0.00 0.00 0.00 3.18
475 478 2.758009 CCCATTTGCCTCAACTTTGTG 58.242 47.619 0.00 0.00 0.00 3.33
483 486 1.187974 CAAGATGCCCATTTGCCTCA 58.812 50.000 0.00 0.00 0.00 3.86
535 538 2.872557 CCACATCCGCTGCAAGTG 59.127 61.111 0.00 2.28 46.11 3.16
575 578 9.979578 TTTGTGAATGAATGTTAACTTGCTAAT 57.020 25.926 7.22 0.00 0.00 1.73
577 580 9.809096 TTTTTGTGAATGAATGTTAACTTGCTA 57.191 25.926 7.22 0.00 0.00 3.49
578 581 8.715191 TTTTTGTGAATGAATGTTAACTTGCT 57.285 26.923 7.22 0.00 0.00 3.91
628 631 8.137437 CAGGTCATTGTCAAAACAGTCTATTTT 58.863 33.333 0.00 0.00 36.57 1.82
646 649 2.092538 CAGGAGCCAGAATCAGGTCATT 60.093 50.000 5.19 0.00 32.12 2.57
647 650 1.489649 CAGGAGCCAGAATCAGGTCAT 59.510 52.381 5.19 0.00 32.12 3.06
648 651 0.907486 CAGGAGCCAGAATCAGGTCA 59.093 55.000 5.19 0.00 32.12 4.02
649 652 1.198713 TCAGGAGCCAGAATCAGGTC 58.801 55.000 0.00 0.00 0.00 3.85
650 653 1.558756 CTTCAGGAGCCAGAATCAGGT 59.441 52.381 0.00 0.00 0.00 4.00
651 654 1.746516 GCTTCAGGAGCCAGAATCAGG 60.747 57.143 0.00 0.00 46.01 3.86
665 668 2.503895 AGGATTTGACCTGGCTTCAG 57.496 50.000 0.00 0.00 39.01 3.02
706 709 5.198965 AGCTGATGTGCTTCCTATTGATTT 58.801 37.500 0.00 0.00 40.93 2.17
707 710 4.789807 AGCTGATGTGCTTCCTATTGATT 58.210 39.130 0.00 0.00 40.93 2.57
880 920 4.333649 TGTCAACAGACAAGAGCTTTTCAG 59.666 41.667 0.00 0.00 39.21 3.02
1041 1089 5.482686 CTCTTGAAAATAAGAGCAGAGCC 57.517 43.478 2.94 0.00 44.92 4.70
1180 1243 4.518217 CATATCGAAAATGTGAAGGCGTC 58.482 43.478 0.00 0.00 0.00 5.19
1204 1267 0.535780 TTGTCTGCAGCCTTGGAGTG 60.536 55.000 9.47 0.00 42.77 3.51
1215 1278 0.179094 AGACGACGGTTTTGTCTGCA 60.179 50.000 9.78 0.00 46.04 4.41
1250 1313 3.918253 TTGACATGGACAGGGCGGC 62.918 63.158 0.00 0.00 0.00 6.53
1312 1375 2.080286 ACCGCGCCATCATAATCTAC 57.920 50.000 0.00 0.00 0.00 2.59
1347 1410 1.262950 TGAACATTCGTGAAGTTGCCG 59.737 47.619 0.00 0.00 0.00 5.69
1359 1431 1.811359 AGCTGAGCTTGCTGAACATTC 59.189 47.619 13.29 0.00 39.56 2.67
1371 1443 1.209019 CCAGTATCCAACAGCTGAGCT 59.791 52.381 23.35 0.00 40.77 4.09
1520 1592 8.095792 TGAAACGGAATATGTAGTTACCAGAAA 58.904 33.333 0.00 0.00 0.00 2.52
1770 1842 2.234908 CCGGAGATTACCATCAGGATCC 59.765 54.545 2.48 2.48 38.69 3.36
1845 1917 1.202758 TGGACGTTGCAAGGTTGAGAT 60.203 47.619 24.27 1.81 0.00 2.75
1968 2040 1.598882 TGTTGACAATAGCCGTGCAA 58.401 45.000 0.00 0.00 0.00 4.08
2071 2143 7.868906 TCCTACAATAATAAAAGGAAACCGG 57.131 36.000 0.00 0.00 33.45 5.28
2181 2253 1.818959 TTGTTGGGTAGGTCCGTCCG 61.819 60.000 0.49 0.00 41.99 4.79
2208 2280 5.305644 AGGAAGCTTGAGATATATTGTCCGT 59.694 40.000 2.10 0.00 0.00 4.69
2234 2306 6.493458 AGCTGTATTTGAAACATTTACCCTGT 59.507 34.615 0.00 0.00 0.00 4.00
2458 2539 3.744660 CCCATACTTCTGATGGCCTAAC 58.255 50.000 3.32 0.00 42.29 2.34
2682 2763 2.191802 CTAGCAATCACACTCAGCTCG 58.808 52.381 0.00 0.00 36.80 5.03
2796 2877 2.499197 TCACCGAACAAAATGCTAGCA 58.501 42.857 21.85 21.85 0.00 3.49
2822 2903 1.022735 CCAGTCCAGCAAGATGATGC 58.977 55.000 0.00 0.00 46.78 3.91
2823 2904 2.704464 TCCAGTCCAGCAAGATGATG 57.296 50.000 0.00 0.00 32.77 3.07
2824 2905 2.683152 GCTTCCAGTCCAGCAAGATGAT 60.683 50.000 0.00 0.00 35.95 2.45
2825 2906 1.339438 GCTTCCAGTCCAGCAAGATGA 60.339 52.381 0.00 0.00 35.95 2.92
3171 3258 0.325933 CCACCTCTGCATCTGAACCA 59.674 55.000 0.00 0.00 0.00 3.67
3190 3277 2.681848 CAAGCTTCCTGATCACCATGTC 59.318 50.000 0.00 0.00 0.00 3.06
3199 3286 2.490903 GCATTGTGACAAGCTTCCTGAT 59.509 45.455 3.74 0.00 0.00 2.90
3231 3318 5.451520 CCAAGATTCATCATTTCCTTCCAGC 60.452 44.000 0.00 0.00 0.00 4.85
3285 3372 0.029834 GCACATAGCTGAATTGCCCG 59.970 55.000 0.00 0.00 41.15 6.13
3493 3613 4.177026 TGGTTTTTCCACATTGTTTCACG 58.823 39.130 0.00 0.00 41.93 4.35
3562 3682 4.509616 TGTTCCACACTTATTACCATCGG 58.490 43.478 0.00 0.00 0.00 4.18
3581 3705 3.447586 TCTGCGGCTCTTACTAATCTGTT 59.552 43.478 0.00 0.00 0.00 3.16
3589 3713 3.145228 GCTTTCTGCGGCTCTTACT 57.855 52.632 0.00 0.00 0.00 2.24
3599 3723 1.154395 GCCGTCTTTCGCTTTCTGC 60.154 57.895 0.00 0.00 38.35 4.26
3600 3724 0.110644 GTGCCGTCTTTCGCTTTCTG 60.111 55.000 0.00 0.00 38.35 3.02
3601 3725 0.531974 TGTGCCGTCTTTCGCTTTCT 60.532 50.000 0.00 0.00 38.35 2.52
3602 3726 0.384353 GTGTGCCGTCTTTCGCTTTC 60.384 55.000 0.00 0.00 38.35 2.62
3607 3731 0.319211 TACCAGTGTGCCGTCTTTCG 60.319 55.000 0.00 0.00 39.52 3.46
3617 3741 1.806542 GACCTTGCATGTACCAGTGTG 59.193 52.381 0.00 0.00 0.00 3.82
3618 3742 1.419762 TGACCTTGCATGTACCAGTGT 59.580 47.619 0.00 0.00 0.00 3.55
3619 3743 1.806542 GTGACCTTGCATGTACCAGTG 59.193 52.381 0.00 0.00 0.00 3.66
3621 3745 1.078709 CGTGACCTTGCATGTACCAG 58.921 55.000 0.00 0.00 0.00 4.00
3623 3747 2.373540 TACGTGACCTTGCATGTACC 57.626 50.000 0.00 0.00 38.79 3.34
3625 3749 4.100344 ACCATATACGTGACCTTGCATGTA 59.900 41.667 0.00 0.00 42.54 2.29
3631 3755 4.500127 TGTCAACCATATACGTGACCTTG 58.500 43.478 0.00 0.00 39.72 3.61
3632 3756 4.811969 TGTCAACCATATACGTGACCTT 57.188 40.909 0.00 0.00 39.72 3.50
3636 3760 5.105513 ACACTGATGTCAACCATATACGTGA 60.106 40.000 0.00 0.00 31.55 4.35
3639 3763 5.109210 ACACACTGATGTCAACCATATACG 58.891 41.667 0.00 0.00 36.72 3.06
3642 3766 5.181811 CACAACACACTGATGTCAACCATAT 59.818 40.000 0.00 0.00 36.72 1.78
3647 3771 3.623060 AGACACAACACACTGATGTCAAC 59.377 43.478 5.56 0.00 41.72 3.18
3651 3775 3.872696 TCAAGACACAACACACTGATGT 58.127 40.909 0.00 0.00 40.80 3.06
3689 3813 2.994186 ATCATGGCCTGGCATTTTTC 57.006 45.000 22.05 1.86 0.00 2.29
3694 3818 2.034124 GTGTAAATCATGGCCTGGCAT 58.966 47.619 22.05 7.62 0.00 4.40
3695 3819 1.005805 AGTGTAAATCATGGCCTGGCA 59.994 47.619 22.05 5.12 0.00 4.92
3696 3820 1.767759 AGTGTAAATCATGGCCTGGC 58.232 50.000 11.05 11.05 0.00 4.85
3697 3821 3.763360 TCAAAGTGTAAATCATGGCCTGG 59.237 43.478 3.32 0.00 0.00 4.45
3698 3822 5.389859 TTCAAAGTGTAAATCATGGCCTG 57.610 39.130 3.32 0.00 0.00 4.85
3721 3847 1.921243 CTGGACGCGACATTGACATA 58.079 50.000 15.93 0.00 0.00 2.29
3729 3855 1.092921 AAACAAAGCTGGACGCGACA 61.093 50.000 15.93 10.91 45.59 4.35
3730 3856 0.657368 CAAACAAAGCTGGACGCGAC 60.657 55.000 15.93 6.56 45.59 5.19
3748 3874 4.196193 ACACATAAGCGCTATTAAAGGCA 58.804 39.130 12.05 0.00 0.00 4.75
3775 3904 4.837093 TGTGGATCGAAGGGAGTAATTT 57.163 40.909 0.00 0.00 0.00 1.82
3781 3910 5.126067 ACAATTAATGTGGATCGAAGGGAG 58.874 41.667 0.00 0.00 41.93 4.30
3782 3911 5.110814 ACAATTAATGTGGATCGAAGGGA 57.889 39.130 0.00 0.00 41.93 4.20
3783 3912 4.881273 TGACAATTAATGTGGATCGAAGGG 59.119 41.667 0.00 0.00 44.12 3.95
3784 3913 6.624352 ATGACAATTAATGTGGATCGAAGG 57.376 37.500 0.00 0.00 44.12 3.46
3785 3914 8.830580 AGTTATGACAATTAATGTGGATCGAAG 58.169 33.333 0.00 0.00 44.12 3.79
3786 3915 8.731275 AGTTATGACAATTAATGTGGATCGAA 57.269 30.769 0.00 0.00 44.12 3.71
3787 3916 8.731275 AAGTTATGACAATTAATGTGGATCGA 57.269 30.769 0.00 0.00 44.12 3.59
3818 3947 7.664082 TGCCATGGTTTTAATACAATGTTTG 57.336 32.000 14.67 0.27 29.05 2.93
3819 3948 8.860780 ATTGCCATGGTTTTAATACAATGTTT 57.139 26.923 14.67 0.00 29.05 2.83
3820 3949 8.860780 AATTGCCATGGTTTTAATACAATGTT 57.139 26.923 14.67 0.00 29.05 2.71
3821 3950 9.950496 TTAATTGCCATGGTTTTAATACAATGT 57.050 25.926 14.67 0.00 29.05 2.71
3879 4008 6.984474 TCTTTTAGCAACCCTACATTAGATCG 59.016 38.462 0.00 0.00 0.00 3.69
3883 4012 8.682936 ATGATCTTTTAGCAACCCTACATTAG 57.317 34.615 0.00 0.00 0.00 1.73
3885 4014 9.289782 GATATGATCTTTTAGCAACCCTACATT 57.710 33.333 0.00 0.00 0.00 2.71
3886 4015 8.439971 TGATATGATCTTTTAGCAACCCTACAT 58.560 33.333 0.00 0.00 0.00 2.29
3888 4017 8.150945 TCTGATATGATCTTTTAGCAACCCTAC 58.849 37.037 0.00 0.00 0.00 3.18
3890 4019 7.071698 TCTCTGATATGATCTTTTAGCAACCCT 59.928 37.037 0.00 0.00 0.00 4.34
3892 4021 8.845413 ATCTCTGATATGATCTTTTAGCAACC 57.155 34.615 0.00 0.00 0.00 3.77
3965 4098 9.233232 CTTTGCGTAAACTTTAGAGAACAAAAT 57.767 29.630 0.00 0.00 0.00 1.82
3966 4099 8.238631 ACTTTGCGTAAACTTTAGAGAACAAAA 58.761 29.630 0.00 0.00 0.00 2.44
3967 4100 7.754625 ACTTTGCGTAAACTTTAGAGAACAAA 58.245 30.769 0.00 0.00 0.00 2.83
3968 4101 7.311364 ACTTTGCGTAAACTTTAGAGAACAA 57.689 32.000 0.00 0.00 0.00 2.83
3969 4102 6.913873 ACTTTGCGTAAACTTTAGAGAACA 57.086 33.333 0.00 0.00 0.00 3.18
3970 4103 8.070007 AGTACTTTGCGTAAACTTTAGAGAAC 57.930 34.615 0.00 0.00 0.00 3.01
3985 4118 1.419374 AACTGAGCGAGTACTTTGCG 58.581 50.000 13.40 6.73 41.40 4.85
3992 4125 6.143438 CGAAGTAAAAAGAAACTGAGCGAGTA 59.857 38.462 0.00 0.00 33.09 2.59
3993 4126 5.050972 CGAAGTAAAAAGAAACTGAGCGAGT 60.051 40.000 0.00 0.00 35.94 4.18
3994 4127 5.366752 CGAAGTAAAAAGAAACTGAGCGAG 58.633 41.667 0.00 0.00 0.00 5.03
3995 4128 4.318546 GCGAAGTAAAAAGAAACTGAGCGA 60.319 41.667 0.00 0.00 0.00 4.93
3996 4129 3.900703 GCGAAGTAAAAAGAAACTGAGCG 59.099 43.478 0.00 0.00 0.00 5.03
3997 4130 3.900703 CGCGAAGTAAAAAGAAACTGAGC 59.099 43.478 0.00 0.00 0.00 4.26
3998 4131 5.079397 ACGCGAAGTAAAAAGAAACTGAG 57.921 39.130 15.93 0.00 0.00 3.35
3999 4132 6.774354 ATACGCGAAGTAAAAAGAAACTGA 57.226 33.333 15.93 0.00 39.04 3.41
4000 4133 8.430063 TCTAATACGCGAAGTAAAAAGAAACTG 58.570 33.333 15.93 0.00 39.04 3.16
4001 4134 8.524870 TCTAATACGCGAAGTAAAAAGAAACT 57.475 30.769 15.93 0.00 39.04 2.66
4002 4135 9.750882 AATCTAATACGCGAAGTAAAAAGAAAC 57.249 29.630 15.93 0.00 39.04 2.78
4004 4137 9.749490 CAAATCTAATACGCGAAGTAAAAAGAA 57.251 29.630 15.93 0.00 39.04 2.52
4005 4138 8.928733 ACAAATCTAATACGCGAAGTAAAAAGA 58.071 29.630 15.93 4.69 39.04 2.52
4006 4139 9.537848 AACAAATCTAATACGCGAAGTAAAAAG 57.462 29.630 15.93 0.00 39.04 2.27
4007 4140 9.532697 GAACAAATCTAATACGCGAAGTAAAAA 57.467 29.630 15.93 0.00 39.04 1.94
4008 4141 8.710551 TGAACAAATCTAATACGCGAAGTAAAA 58.289 29.630 15.93 0.00 39.04 1.52
4009 4142 8.242085 TGAACAAATCTAATACGCGAAGTAAA 57.758 30.769 15.93 0.00 39.04 2.01
4010 4143 7.815398 TGAACAAATCTAATACGCGAAGTAA 57.185 32.000 15.93 0.00 39.04 2.24
4011 4144 7.815398 TTGAACAAATCTAATACGCGAAGTA 57.185 32.000 15.93 0.00 40.03 2.24
4012 4145 6.715344 TTGAACAAATCTAATACGCGAAGT 57.285 33.333 15.93 0.00 0.00 3.01
4013 4146 7.234384 ACTTTGAACAAATCTAATACGCGAAG 58.766 34.615 15.93 4.52 0.00 3.79
4014 4147 7.095565 TGACTTTGAACAAATCTAATACGCGAA 60.096 33.333 15.93 0.00 0.00 4.70
4015 4148 6.366604 TGACTTTGAACAAATCTAATACGCGA 59.633 34.615 15.93 0.00 0.00 5.87
4016 4149 6.530567 TGACTTTGAACAAATCTAATACGCG 58.469 36.000 3.53 3.53 0.00 6.01
4017 4150 8.722342 TTTGACTTTGAACAAATCTAATACGC 57.278 30.769 0.44 0.00 32.26 4.42
4078 4211 9.221933 TGTTTACTTGGTATTGTAAATGTCGAT 57.778 29.630 0.00 0.00 39.70 3.59
4079 4212 8.604640 TGTTTACTTGGTATTGTAAATGTCGA 57.395 30.769 0.00 0.00 39.70 4.20
4137 4270 9.503427 GACATTCACGATACGATATCAATATCA 57.497 33.333 17.80 5.23 39.23 2.15
4138 4271 9.503427 TGACATTCACGATACGATATCAATATC 57.497 33.333 3.12 8.39 36.62 1.63
4139 4272 9.855021 TTGACATTCACGATACGATATCAATAT 57.145 29.630 3.12 0.00 0.00 1.28
4140 4273 9.855021 ATTGACATTCACGATACGATATCAATA 57.145 29.630 3.12 0.00 0.00 1.90
4141 4274 8.763049 ATTGACATTCACGATACGATATCAAT 57.237 30.769 3.12 0.00 0.00 2.57
4142 4275 9.685828 TTATTGACATTCACGATACGATATCAA 57.314 29.630 3.12 0.00 0.00 2.57
4143 4276 9.855021 ATTATTGACATTCACGATACGATATCA 57.145 29.630 3.12 0.00 0.00 2.15
4148 4281 9.908152 AGAATATTATTGACATTCACGATACGA 57.092 29.630 0.00 0.00 32.27 3.43
4187 4320 7.489113 GCTGAAGTCAAACTCTTCAAAATTTGA 59.511 33.333 4.03 4.03 46.58 2.69
4188 4321 7.276218 TGCTGAAGTCAAACTCTTCAAAATTTG 59.724 33.333 0.00 0.00 46.58 2.32
4189 4322 7.322664 TGCTGAAGTCAAACTCTTCAAAATTT 58.677 30.769 9.15 0.00 46.58 1.82
4190 4323 6.866480 TGCTGAAGTCAAACTCTTCAAAATT 58.134 32.000 9.15 0.00 46.58 1.82
4191 4324 6.455360 TGCTGAAGTCAAACTCTTCAAAAT 57.545 33.333 9.15 0.00 46.58 1.82
4192 4325 5.895636 TGCTGAAGTCAAACTCTTCAAAA 57.104 34.783 9.15 0.00 46.58 2.44
4193 4326 5.895636 TTGCTGAAGTCAAACTCTTCAAA 57.104 34.783 9.15 0.89 46.58 2.69
4194 4327 5.895636 TTTGCTGAAGTCAAACTCTTCAA 57.104 34.783 9.15 0.00 46.58 2.69
4195 4328 5.393027 GGTTTTGCTGAAGTCAAACTCTTCA 60.393 40.000 7.87 7.87 45.66 3.02
4196 4329 5.037385 GGTTTTGCTGAAGTCAAACTCTTC 58.963 41.667 0.00 0.00 40.89 2.87
4197 4330 4.706962 AGGTTTTGCTGAAGTCAAACTCTT 59.293 37.500 0.00 0.00 33.66 2.85
4198 4331 4.273318 AGGTTTTGCTGAAGTCAAACTCT 58.727 39.130 0.00 0.00 33.66 3.24
4199 4332 4.639135 AGGTTTTGCTGAAGTCAAACTC 57.361 40.909 0.00 0.00 33.66 3.01
4200 4333 6.507023 CATTAGGTTTTGCTGAAGTCAAACT 58.493 36.000 0.00 0.00 33.66 2.66
4201 4334 5.175673 GCATTAGGTTTTGCTGAAGTCAAAC 59.824 40.000 0.00 0.00 35.95 2.93
4202 4335 5.288804 GCATTAGGTTTTGCTGAAGTCAAA 58.711 37.500 0.00 0.00 35.95 2.69
4203 4336 4.556501 CGCATTAGGTTTTGCTGAAGTCAA 60.557 41.667 0.00 0.00 36.71 3.18
4204 4337 3.058293 CGCATTAGGTTTTGCTGAAGTCA 60.058 43.478 0.00 0.00 36.71 3.41
4205 4338 3.492313 CGCATTAGGTTTTGCTGAAGTC 58.508 45.455 0.00 0.00 36.71 3.01
4206 4339 2.351738 GCGCATTAGGTTTTGCTGAAGT 60.352 45.455 0.30 0.00 36.71 3.01
4207 4340 2.253603 GCGCATTAGGTTTTGCTGAAG 58.746 47.619 0.30 0.00 36.71 3.02
4208 4341 1.611006 TGCGCATTAGGTTTTGCTGAA 59.389 42.857 5.66 0.00 36.71 3.02
4209 4342 1.199789 CTGCGCATTAGGTTTTGCTGA 59.800 47.619 12.24 0.00 36.71 4.26
4210 4343 1.199789 TCTGCGCATTAGGTTTTGCTG 59.800 47.619 12.24 0.00 36.71 4.41
4211 4344 1.470098 CTCTGCGCATTAGGTTTTGCT 59.530 47.619 12.24 0.00 36.71 3.91
4212 4345 1.200020 ACTCTGCGCATTAGGTTTTGC 59.800 47.619 12.24 0.00 35.50 3.68
4213 4346 4.678509 TTACTCTGCGCATTAGGTTTTG 57.321 40.909 12.24 0.00 0.00 2.44
4214 4347 5.472137 TCTTTTACTCTGCGCATTAGGTTTT 59.528 36.000 12.24 0.00 0.00 2.43
4215 4348 5.001232 TCTTTTACTCTGCGCATTAGGTTT 58.999 37.500 12.24 0.00 0.00 3.27
4216 4349 4.575885 TCTTTTACTCTGCGCATTAGGTT 58.424 39.130 12.24 0.00 0.00 3.50
4217 4350 4.202245 TCTTTTACTCTGCGCATTAGGT 57.798 40.909 12.24 10.12 0.00 3.08
4218 4351 5.545658 TTTCTTTTACTCTGCGCATTAGG 57.454 39.130 12.24 0.00 0.00 2.69
4219 4352 5.795441 GGTTTTCTTTTACTCTGCGCATTAG 59.205 40.000 12.24 14.68 0.00 1.73
4220 4353 5.239744 TGGTTTTCTTTTACTCTGCGCATTA 59.760 36.000 12.24 0.46 0.00 1.90
4221 4354 4.037446 TGGTTTTCTTTTACTCTGCGCATT 59.963 37.500 12.24 0.09 0.00 3.56
4222 4355 3.568007 TGGTTTTCTTTTACTCTGCGCAT 59.432 39.130 12.24 0.00 0.00 4.73
4223 4356 2.946329 TGGTTTTCTTTTACTCTGCGCA 59.054 40.909 10.98 10.98 0.00 6.09
4224 4357 3.619233 TGGTTTTCTTTTACTCTGCGC 57.381 42.857 0.00 0.00 0.00 6.09
4225 4358 6.797033 CACTATTGGTTTTCTTTTACTCTGCG 59.203 38.462 0.00 0.00 0.00 5.18
4226 4359 7.649057 ACACTATTGGTTTTCTTTTACTCTGC 58.351 34.615 0.00 0.00 0.00 4.26
4242 4375 9.832445 GGGACAACCATATATATACACTATTGG 57.168 37.037 6.34 6.34 39.85 3.16
4246 4379 9.831682 TTGAGGGACAACCATATATATACACTA 57.168 33.333 0.00 0.00 43.89 2.74
4247 4380 8.736097 TTGAGGGACAACCATATATATACACT 57.264 34.615 0.00 0.00 43.89 3.55
4248 4381 8.812972 TCTTGAGGGACAACCATATATATACAC 58.187 37.037 0.00 0.00 43.89 2.90
4249 4382 8.966155 TCTTGAGGGACAACCATATATATACA 57.034 34.615 0.00 0.00 43.89 2.29
4260 4393 5.239525 GCACAATATATCTTGAGGGACAACC 59.760 44.000 7.76 0.00 40.67 3.77
4261 4394 6.058183 AGCACAATATATCTTGAGGGACAAC 58.942 40.000 7.76 0.00 34.56 3.32
4262 4395 6.252599 AGCACAATATATCTTGAGGGACAA 57.747 37.500 7.76 0.00 36.97 3.18
4263 4396 5.894298 AGCACAATATATCTTGAGGGACA 57.106 39.130 7.76 0.00 0.00 4.02
4264 4397 5.864474 CGTAGCACAATATATCTTGAGGGAC 59.136 44.000 7.76 1.00 0.00 4.46
4265 4398 5.538813 ACGTAGCACAATATATCTTGAGGGA 59.461 40.000 7.76 0.00 0.00 4.20
4267 4400 7.095607 GGAAACGTAGCACAATATATCTTGAGG 60.096 40.741 7.76 1.53 0.00 3.86
4268 4401 7.095607 GGGAAACGTAGCACAATATATCTTGAG 60.096 40.741 7.76 1.41 0.00 3.02
4269 4402 6.704493 GGGAAACGTAGCACAATATATCTTGA 59.296 38.462 7.76 0.00 0.00 3.02
4270 4403 6.706270 AGGGAAACGTAGCACAATATATCTTG 59.294 38.462 0.00 0.00 0.00 3.02
4273 4406 6.220930 TGAGGGAAACGTAGCACAATATATC 58.779 40.000 0.00 0.00 0.00 1.63
4275 4408 5.601583 TGAGGGAAACGTAGCACAATATA 57.398 39.130 0.00 0.00 0.00 0.86
4278 4411 2.851263 TGAGGGAAACGTAGCACAAT 57.149 45.000 0.00 0.00 0.00 2.71
4288 4421 5.049828 CCTGTTTGAAAACATGAGGGAAAC 58.950 41.667 8.94 2.76 46.71 2.78
4330 4463 4.464069 GGATACATCAGCCCTATGTCTC 57.536 50.000 0.00 1.28 38.49 3.36
4375 4508 2.110213 TTTCACTGACCGCCGCTT 59.890 55.556 0.00 0.00 0.00 4.68
4376 4509 2.660258 AAGTTTCACTGACCGCCGCT 62.660 55.000 0.00 0.00 0.00 5.52
4377 4510 0.947180 TAAGTTTCACTGACCGCCGC 60.947 55.000 0.00 0.00 0.00 6.53
4378 4511 1.459592 CTTAAGTTTCACTGACCGCCG 59.540 52.381 0.00 0.00 0.00 6.46
4379 4512 1.197036 GCTTAAGTTTCACTGACCGCC 59.803 52.381 4.02 0.00 0.00 6.13
4380 4513 1.136336 CGCTTAAGTTTCACTGACCGC 60.136 52.381 4.02 0.00 0.00 5.68
4381 4514 1.459592 CCGCTTAAGTTTCACTGACCG 59.540 52.381 4.02 0.00 0.00 4.79
4382 4515 1.197036 GCCGCTTAAGTTTCACTGACC 59.803 52.381 4.02 0.00 0.00 4.02
4383 4516 1.871039 TGCCGCTTAAGTTTCACTGAC 59.129 47.619 4.02 0.00 0.00 3.51
4384 4517 2.143122 CTGCCGCTTAAGTTTCACTGA 58.857 47.619 4.02 0.00 0.00 3.41
4385 4518 1.197721 CCTGCCGCTTAAGTTTCACTG 59.802 52.381 4.02 0.00 0.00 3.66
4386 4519 1.071699 TCCTGCCGCTTAAGTTTCACT 59.928 47.619 4.02 0.00 0.00 3.41
4387 4520 1.197036 GTCCTGCCGCTTAAGTTTCAC 59.803 52.381 4.02 0.00 0.00 3.18
4388 4521 1.202710 TGTCCTGCCGCTTAAGTTTCA 60.203 47.619 4.02 0.00 0.00 2.69
4389 4522 1.519408 TGTCCTGCCGCTTAAGTTTC 58.481 50.000 4.02 0.00 0.00 2.78
4390 4523 1.812571 CATGTCCTGCCGCTTAAGTTT 59.187 47.619 4.02 0.00 0.00 2.66
4391 4524 1.003118 TCATGTCCTGCCGCTTAAGTT 59.997 47.619 4.02 0.00 0.00 2.66
4392 4525 0.613260 TCATGTCCTGCCGCTTAAGT 59.387 50.000 4.02 0.00 0.00 2.24
4393 4526 1.293924 CTCATGTCCTGCCGCTTAAG 58.706 55.000 0.00 0.00 0.00 1.85
4394 4527 0.744414 GCTCATGTCCTGCCGCTTAA 60.744 55.000 0.00 0.00 0.00 1.85
4395 4528 1.153369 GCTCATGTCCTGCCGCTTA 60.153 57.895 0.00 0.00 0.00 3.09
4396 4529 2.437359 GCTCATGTCCTGCCGCTT 60.437 61.111 0.00 0.00 0.00 4.68
4397 4530 2.964310 AAGCTCATGTCCTGCCGCT 61.964 57.895 0.00 0.00 34.23 5.52
4398 4531 2.437359 AAGCTCATGTCCTGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
4399 4532 2.758089 GCAAGCTCATGTCCTGCCG 61.758 63.158 0.00 0.00 0.00 5.69
4400 4533 0.964358 AAGCAAGCTCATGTCCTGCC 60.964 55.000 0.76 0.00 0.00 4.85
4401 4534 0.170561 CAAGCAAGCTCATGTCCTGC 59.829 55.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.