Multiple sequence alignment - TraesCS5D01G530400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G530400 chr5D 100.000 4127 0 0 1 4127 546682047 546677921 0.000000e+00 7622
1 TraesCS5D01G530400 chr5B 90.697 3343 204 54 834 4127 689868593 689865309 0.000000e+00 4351
2 TraesCS5D01G530400 chr4A 90.104 2112 140 30 820 2890 622275187 622277270 0.000000e+00 2678
3 TraesCS5D01G530400 chr4A 83.813 278 30 6 3485 3747 622281254 622281531 2.460000e-62 250
4 TraesCS5D01G530400 chr6D 84.436 1285 168 16 1216 2473 460375792 460374513 0.000000e+00 1236
5 TraesCS5D01G530400 chr6A 78.866 1041 161 31 1043 2064 606446096 606445096 0.000000e+00 649
6 TraesCS5D01G530400 chr6A 84.568 162 15 2 2123 2284 606445098 606444947 7.150000e-33 152
7 TraesCS5D01G530400 chr2B 75.873 659 131 22 1 651 68706870 68706232 1.110000e-80 311
8 TraesCS5D01G530400 chr7A 83.039 283 26 13 3756 4024 667941141 667941415 1.920000e-58 237
9 TraesCS5D01G530400 chr7A 80.565 283 35 12 3756 4024 727870787 727870511 2.520000e-47 200
10 TraesCS5D01G530400 chr7A 88.764 89 10 0 3936 4024 127007306 127007218 4.360000e-20 110
11 TraesCS5D01G530400 chr1A 74.950 499 102 18 1 493 524683996 524683515 1.500000e-49 207
12 TraesCS5D01G530400 chr3B 77.003 387 37 26 3776 4125 703310948 703311319 1.520000e-39 174
13 TraesCS5D01G530400 chr3B 76.636 214 28 9 3932 4123 228693415 228693202 9.440000e-17 99
14 TraesCS5D01G530400 chr7D 76.374 364 39 25 3797 4125 235495639 235495990 7.150000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G530400 chr5D 546677921 546682047 4126 True 7622.0 7622 100.0000 1 4127 1 chr5D.!!$R1 4126
1 TraesCS5D01G530400 chr5B 689865309 689868593 3284 True 4351.0 4351 90.6970 834 4127 1 chr5B.!!$R1 3293
2 TraesCS5D01G530400 chr4A 622275187 622281531 6344 False 1464.0 2678 86.9585 820 3747 2 chr4A.!!$F1 2927
3 TraesCS5D01G530400 chr6D 460374513 460375792 1279 True 1236.0 1236 84.4360 1216 2473 1 chr6D.!!$R1 1257
4 TraesCS5D01G530400 chr6A 606444947 606446096 1149 True 400.5 649 81.7170 1043 2284 2 chr6A.!!$R1 1241
5 TraesCS5D01G530400 chr2B 68706232 68706870 638 True 311.0 311 75.8730 1 651 1 chr2B.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 603 0.033504 ATCTTGTGTCGTTCAGCCGT 59.966 50.0 0.00 0.0 0.00 5.68 F
645 651 0.035739 AAAGCGGGGTGAACGTATGT 59.964 50.0 0.00 0.0 0.00 2.29 F
647 653 0.035739 AGCGGGGTGAACGTATGTTT 59.964 50.0 0.98 0.0 38.78 2.83 F
693 699 0.182775 AACCAAAGTCACGCCTCCTT 59.817 50.0 0.00 0.0 0.00 3.36 F
916 926 0.184933 CTGACCCCACCAAACCAGAA 59.815 55.0 0.00 0.0 0.00 3.02 F
1312 1362 0.464452 CCCTCTTTATTCGGAGCCGT 59.536 55.0 8.96 0.0 40.74 5.68 F
2796 2916 0.744414 CAACCCACCCTGCTACATCG 60.744 60.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2450 1.012841 GAGCTTCATCTTTCCTGCGG 58.987 55.000 0.00 0.00 0.00 5.69 R
2503 2613 1.584380 CTGCAAACCTCTCAGCTGGC 61.584 60.000 15.13 7.14 0.00 4.85 R
2632 2742 2.375174 AGTTGTTAGGAAGATGCCCACA 59.625 45.455 0.00 0.00 0.00 4.17 R
2691 2804 0.603975 GCAACCCTTCTGAAGACGCT 60.604 55.000 18.68 0.00 0.00 5.07 R
2796 2916 0.251341 AGGCCCACAACCAGAACATC 60.251 55.000 0.00 0.00 0.00 3.06 R
2834 2954 0.394216 TCAAGTGCAGCAACACCAGT 60.394 50.000 0.00 0.00 41.67 4.00 R
3719 7465 0.250684 TGTGCGGGAAGAATGCAGAA 60.251 50.000 0.00 0.00 39.67 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.087009 GCGGCATACGGTATCTCGC 61.087 63.158 20.81 20.81 44.51 5.03
30 31 1.529865 CATACGGTATCTCGCGACAGA 59.470 52.381 3.71 1.60 0.00 3.41
31 32 1.655484 TACGGTATCTCGCGACAGAA 58.345 50.000 3.71 0.00 0.00 3.02
38 39 1.805539 CTCGCGACAGAAATGCCGA 60.806 57.895 3.71 0.00 0.00 5.54
80 81 3.667087 GCATGGTTGCTGTTCGGA 58.333 55.556 0.00 0.00 45.77 4.55
81 82 1.210155 GCATGGTTGCTGTTCGGAC 59.790 57.895 0.00 0.00 45.77 4.79
82 83 1.514678 GCATGGTTGCTGTTCGGACA 61.515 55.000 0.00 0.00 45.77 4.02
105 106 1.303561 ATCATTGCGGCAGTGGTGT 60.304 52.632 22.82 8.88 0.00 4.16
115 116 1.893919 GCAGTGGTGTCTCTCCTCCC 61.894 65.000 0.00 0.00 0.00 4.30
116 117 0.542938 CAGTGGTGTCTCTCCTCCCA 60.543 60.000 0.00 0.00 0.00 4.37
118 119 0.251832 GTGGTGTCTCTCCTCCCAGA 60.252 60.000 0.00 0.00 0.00 3.86
126 127 2.182827 CTCTCCTCCCAGATTGTGTGA 58.817 52.381 0.00 0.00 0.00 3.58
131 132 2.507484 CTCCCAGATTGTGTGAGCAAA 58.493 47.619 0.00 0.00 31.63 3.68
132 133 2.227388 CTCCCAGATTGTGTGAGCAAAC 59.773 50.000 0.00 0.00 31.63 2.93
133 134 1.955778 CCCAGATTGTGTGAGCAAACA 59.044 47.619 0.00 0.00 31.63 2.83
136 137 2.880268 CAGATTGTGTGAGCAAACAGGA 59.120 45.455 0.00 0.00 31.63 3.86
138 139 1.679139 TTGTGTGAGCAAACAGGAGG 58.321 50.000 0.00 0.00 0.00 4.30
139 140 0.819259 TGTGTGAGCAAACAGGAGGC 60.819 55.000 0.00 0.00 0.00 4.70
140 141 0.819259 GTGTGAGCAAACAGGAGGCA 60.819 55.000 0.00 0.00 0.00 4.75
141 142 0.111061 TGTGAGCAAACAGGAGGCAT 59.889 50.000 0.00 0.00 0.00 4.40
142 143 1.251251 GTGAGCAAACAGGAGGCATT 58.749 50.000 0.00 0.00 0.00 3.56
146 147 1.959085 CAAACAGGAGGCATTGCGT 59.041 52.632 3.02 3.02 0.00 5.24
148 149 1.577328 AAACAGGAGGCATTGCGTCG 61.577 55.000 21.27 13.06 43.28 5.12
149 150 2.125552 CAGGAGGCATTGCGTCGA 60.126 61.111 21.27 0.00 43.28 4.20
171 172 2.995872 GCTCGAACGTGCCCTCTCT 61.996 63.158 9.57 0.00 0.00 3.10
189 191 3.899545 TTCGGAGGGGAAGCGTCCT 62.900 63.158 18.54 4.28 44.28 3.85
190 192 4.148825 CGGAGGGGAAGCGTCCTG 62.149 72.222 18.54 0.42 44.28 3.86
196 198 2.423898 GGGAAGCGTCCTGATCCGA 61.424 63.158 18.54 0.00 44.28 4.55
197 199 1.066587 GGAAGCGTCCTGATCCGAG 59.933 63.158 11.87 0.00 41.24 4.63
199 201 0.173708 GAAGCGTCCTGATCCGAGTT 59.826 55.000 0.00 0.00 0.00 3.01
203 205 0.530744 CGTCCTGATCCGAGTTTGGA 59.469 55.000 0.00 0.00 43.58 3.53
204 206 1.469940 CGTCCTGATCCGAGTTTGGAG 60.470 57.143 0.00 0.00 42.45 3.86
209 211 1.205655 TGATCCGAGTTTGGAGCTCTG 59.794 52.381 14.64 0.00 44.76 3.35
213 215 0.392193 CGAGTTTGGAGCTCTGGCAT 60.392 55.000 14.64 0.00 41.70 4.40
214 216 1.377536 GAGTTTGGAGCTCTGGCATC 58.622 55.000 14.64 3.48 41.70 3.91
215 217 0.392193 AGTTTGGAGCTCTGGCATCG 60.392 55.000 14.64 0.00 41.70 3.84
216 218 0.674895 GTTTGGAGCTCTGGCATCGT 60.675 55.000 14.64 0.00 41.70 3.73
217 219 0.391661 TTTGGAGCTCTGGCATCGTC 60.392 55.000 14.64 0.00 41.70 4.20
221 223 3.558411 GCTCTGGCATCGTCGCAC 61.558 66.667 0.00 0.00 38.54 5.34
223 225 1.446792 CTCTGGCATCGTCGCACTT 60.447 57.895 0.00 0.00 0.00 3.16
225 227 2.434185 TGGCATCGTCGCACTTCC 60.434 61.111 1.52 0.00 0.00 3.46
231 233 4.003788 CGTCGCACTTCCCCTGGT 62.004 66.667 0.00 0.00 0.00 4.00
232 234 2.358737 GTCGCACTTCCCCTGGTG 60.359 66.667 0.00 0.00 36.62 4.17
233 235 3.636231 TCGCACTTCCCCTGGTGG 61.636 66.667 0.00 0.00 34.41 4.61
244 246 4.704833 CTGGTGGCCTCGTGGTGG 62.705 72.222 3.32 0.00 35.27 4.61
262 264 4.323477 CACGGGGGAGTTGCCGAA 62.323 66.667 0.00 0.00 37.63 4.30
263 265 4.016706 ACGGGGGAGTTGCCGAAG 62.017 66.667 0.00 0.00 37.63 3.79
291 293 4.063967 TGCCTTGGCGTCGACGAT 62.064 61.111 39.74 0.00 43.02 3.73
297 299 3.115892 GGCGTCGACGATGGCAAA 61.116 61.111 39.74 0.00 42.56 3.68
298 300 2.673114 GGCGTCGACGATGGCAAAA 61.673 57.895 39.74 0.00 42.56 2.44
299 301 1.509162 GCGTCGACGATGGCAAAAC 60.509 57.895 39.74 15.89 43.02 2.43
302 304 1.071642 TCGACGATGGCAAAACCCA 59.928 52.632 0.00 0.00 39.65 4.51
319 321 1.247567 CCATGGGTTTCGTGCTCTTT 58.752 50.000 2.85 0.00 0.00 2.52
320 322 2.432444 CCATGGGTTTCGTGCTCTTTA 58.568 47.619 2.85 0.00 0.00 1.85
327 329 4.454504 GGGTTTCGTGCTCTTTATGAAGAA 59.545 41.667 1.19 0.00 41.19 2.52
357 359 2.894126 GGTTCTTCTCTCTGTGTCAGGA 59.106 50.000 0.00 0.00 31.51 3.86
358 360 3.513515 GGTTCTTCTCTCTGTGTCAGGAT 59.486 47.826 0.00 0.00 31.51 3.24
359 361 4.381505 GGTTCTTCTCTCTGTGTCAGGATC 60.382 50.000 0.00 0.00 31.51 3.36
361 363 4.015764 TCTTCTCTCTGTGTCAGGATCTG 58.984 47.826 0.00 0.00 31.51 2.90
371 374 1.902508 GTCAGGATCTGGGTGAAGACA 59.097 52.381 0.00 0.00 31.51 3.41
377 381 2.859165 TCTGGGTGAAGACATTGTCC 57.141 50.000 13.14 0.00 32.18 4.02
393 397 4.742201 CCGGTGTGGACTCGGCAG 62.742 72.222 0.00 0.00 42.00 4.85
395 399 4.314440 GGTGTGGACTCGGCAGCA 62.314 66.667 0.00 0.00 0.00 4.41
396 400 2.046892 GTGTGGACTCGGCAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
401 405 2.181777 GACTCGGCAGCATCGACA 59.818 61.111 0.00 0.00 32.86 4.35
406 410 1.029947 TCGGCAGCATCGACACTCTA 61.030 55.000 0.00 0.00 0.00 2.43
408 412 0.173481 GGCAGCATCGACACTCTACA 59.827 55.000 0.00 0.00 0.00 2.74
411 415 0.452184 AGCATCGACACTCTACACCG 59.548 55.000 0.00 0.00 0.00 4.94
414 418 2.516923 CATCGACACTCTACACCGTTC 58.483 52.381 0.00 0.00 0.00 3.95
418 422 2.161030 GACACTCTACACCGTTCTCCT 58.839 52.381 0.00 0.00 0.00 3.69
419 423 2.161030 ACACTCTACACCGTTCTCCTC 58.839 52.381 0.00 0.00 0.00 3.71
422 428 1.746220 CTCTACACCGTTCTCCTCTGG 59.254 57.143 0.00 0.00 0.00 3.86
431 437 2.123982 CTCCTCTGGGGGCATTGC 60.124 66.667 0.00 0.00 35.33 3.56
443 449 1.211709 GCATTGCCGTGGTGGTTAC 59.788 57.895 0.00 0.00 41.21 2.50
446 452 1.231958 ATTGCCGTGGTGGTTACGTG 61.232 55.000 0.00 0.00 41.21 4.49
454 460 0.604578 GGTGGTTACGTGTGCTAGGA 59.395 55.000 0.00 0.00 0.00 2.94
455 461 1.206371 GGTGGTTACGTGTGCTAGGAT 59.794 52.381 0.00 0.00 0.00 3.24
456 462 2.537401 GTGGTTACGTGTGCTAGGATC 58.463 52.381 0.00 0.00 0.00 3.36
457 463 1.133598 TGGTTACGTGTGCTAGGATCG 59.866 52.381 0.00 9.40 0.00 3.69
458 464 1.133790 GGTTACGTGTGCTAGGATCGT 59.866 52.381 17.57 17.57 38.30 3.73
459 465 2.355756 GGTTACGTGTGCTAGGATCGTA 59.644 50.000 16.02 16.02 36.24 3.43
460 466 3.547613 GGTTACGTGTGCTAGGATCGTAG 60.548 52.174 16.46 16.46 38.04 3.51
461 467 0.381089 ACGTGTGCTAGGATCGTAGC 59.619 55.000 31.24 31.24 44.96 3.58
467 473 1.957562 CTAGGATCGTAGCGTGGGG 59.042 63.158 9.38 0.00 0.00 4.96
472 478 2.234913 GATCGTAGCGTGGGGGTGTT 62.235 60.000 0.00 0.00 0.00 3.32
473 479 2.234913 ATCGTAGCGTGGGGGTGTTC 62.235 60.000 0.00 0.00 0.00 3.18
475 481 1.298667 GTAGCGTGGGGGTGTTCAT 59.701 57.895 0.00 0.00 0.00 2.57
480 486 1.616159 CGTGGGGGTGTTCATTTCTT 58.384 50.000 0.00 0.00 0.00 2.52
483 489 1.203125 TGGGGGTGTTCATTTCTTCCC 60.203 52.381 0.00 0.00 34.68 3.97
490 496 1.128692 GTTCATTTCTTCCCGTGCTCG 59.871 52.381 0.14 0.14 0.00 5.03
493 499 2.028839 TCATTTCTTCCCGTGCTCGTTA 60.029 45.455 7.47 0.00 35.01 3.18
494 500 1.787012 TTTCTTCCCGTGCTCGTTAC 58.213 50.000 7.47 0.00 35.01 2.50
495 501 0.675083 TTCTTCCCGTGCTCGTTACA 59.325 50.000 7.47 0.00 35.01 2.41
497 503 0.242825 CTTCCCGTGCTCGTTACAGA 59.757 55.000 7.47 0.00 35.01 3.41
501 507 1.478137 CCGTGCTCGTTACAGATAGC 58.522 55.000 7.47 0.00 35.51 2.97
503 509 1.531264 CGTGCTCGTTACAGATAGCGT 60.531 52.381 0.00 0.00 37.80 5.07
504 510 2.286008 CGTGCTCGTTACAGATAGCGTA 60.286 50.000 0.00 0.00 37.80 4.42
505 511 3.688272 GTGCTCGTTACAGATAGCGTAA 58.312 45.455 0.00 0.00 37.80 3.18
518 524 3.978373 CGTAAGCTGGCGTAGTCG 58.022 61.111 0.00 0.00 40.37 4.18
529 535 1.800315 CGTAGTCGCGTGGGTTCTG 60.800 63.158 5.77 0.00 0.00 3.02
535 541 3.276846 GCGTGGGTTCTGCGTGTT 61.277 61.111 0.00 0.00 0.00 3.32
536 542 2.830285 GCGTGGGTTCTGCGTGTTT 61.830 57.895 0.00 0.00 0.00 2.83
537 543 1.278637 CGTGGGTTCTGCGTGTTTC 59.721 57.895 0.00 0.00 0.00 2.78
539 545 1.890041 TGGGTTCTGCGTGTTTCGG 60.890 57.895 0.00 0.00 40.26 4.30
540 546 2.613506 GGGTTCTGCGTGTTTCGGG 61.614 63.158 0.00 0.00 40.26 5.14
548 554 1.001068 TGCGTGTTTCGGGTATCTCAA 59.999 47.619 0.00 0.00 40.26 3.02
549 555 1.659098 GCGTGTTTCGGGTATCTCAAG 59.341 52.381 0.00 0.00 40.26 3.02
555 561 2.359981 TCGGGTATCTCAAGATCGGT 57.640 50.000 0.00 0.00 36.05 4.69
558 564 3.449737 TCGGGTATCTCAAGATCGGTTTT 59.550 43.478 0.00 0.00 36.05 2.43
567 573 5.245301 TCTCAAGATCGGTTTTGTAAGAGGA 59.755 40.000 0.00 0.00 0.00 3.71
568 574 5.235516 TCAAGATCGGTTTTGTAAGAGGAC 58.764 41.667 0.00 0.00 0.00 3.85
569 575 4.203654 AGATCGGTTTTGTAAGAGGACC 57.796 45.455 0.00 0.00 0.00 4.46
570 576 3.581332 AGATCGGTTTTGTAAGAGGACCA 59.419 43.478 0.00 0.00 0.00 4.02
571 577 3.116079 TCGGTTTTGTAAGAGGACCAC 57.884 47.619 0.00 0.00 0.00 4.16
572 578 2.148768 CGGTTTTGTAAGAGGACCACC 58.851 52.381 0.00 0.00 0.00 4.61
582 588 3.502086 AGGACCACCTCACCATCTT 57.498 52.632 0.00 0.00 44.13 2.40
583 589 0.987294 AGGACCACCTCACCATCTTG 59.013 55.000 0.00 0.00 44.13 3.02
584 590 0.693049 GGACCACCTCACCATCTTGT 59.307 55.000 0.00 0.00 0.00 3.16
585 591 1.611673 GGACCACCTCACCATCTTGTG 60.612 57.143 0.00 0.00 37.59 3.33
586 592 1.072331 GACCACCTCACCATCTTGTGT 59.928 52.381 0.00 0.00 37.51 3.72
587 593 1.072331 ACCACCTCACCATCTTGTGTC 59.928 52.381 0.00 0.00 37.51 3.67
588 594 1.432514 CACCTCACCATCTTGTGTCG 58.567 55.000 0.00 0.00 37.51 4.35
589 595 1.048601 ACCTCACCATCTTGTGTCGT 58.951 50.000 0.00 0.00 37.51 4.34
590 596 1.416401 ACCTCACCATCTTGTGTCGTT 59.584 47.619 0.00 0.00 37.51 3.85
591 597 2.069273 CCTCACCATCTTGTGTCGTTC 58.931 52.381 0.00 0.00 37.51 3.95
592 598 2.547855 CCTCACCATCTTGTGTCGTTCA 60.548 50.000 0.00 0.00 37.51 3.18
593 599 2.733552 CTCACCATCTTGTGTCGTTCAG 59.266 50.000 0.00 0.00 37.51 3.02
594 600 1.195448 CACCATCTTGTGTCGTTCAGC 59.805 52.381 0.00 0.00 0.00 4.26
595 601 0.798776 CCATCTTGTGTCGTTCAGCC 59.201 55.000 0.00 0.00 0.00 4.85
596 602 0.439985 CATCTTGTGTCGTTCAGCCG 59.560 55.000 0.00 0.00 0.00 5.52
597 603 0.033504 ATCTTGTGTCGTTCAGCCGT 59.966 50.000 0.00 0.00 0.00 5.68
598 604 0.874175 TCTTGTGTCGTTCAGCCGTG 60.874 55.000 0.00 0.00 0.00 4.94
599 605 1.151777 CTTGTGTCGTTCAGCCGTGT 61.152 55.000 0.00 0.00 0.00 4.49
600 606 0.102663 TTGTGTCGTTCAGCCGTGTA 59.897 50.000 0.00 0.00 0.00 2.90
601 607 0.595567 TGTGTCGTTCAGCCGTGTAC 60.596 55.000 0.00 0.00 0.00 2.90
602 608 0.318445 GTGTCGTTCAGCCGTGTACT 60.318 55.000 0.00 0.00 0.00 2.73
603 609 0.386476 TGTCGTTCAGCCGTGTACTT 59.614 50.000 0.00 0.00 0.00 2.24
604 610 1.058404 GTCGTTCAGCCGTGTACTTC 58.942 55.000 0.00 0.00 0.00 3.01
605 611 0.956633 TCGTTCAGCCGTGTACTTCT 59.043 50.000 0.00 0.00 0.00 2.85
606 612 1.338973 TCGTTCAGCCGTGTACTTCTT 59.661 47.619 0.00 0.00 0.00 2.52
607 613 2.132762 CGTTCAGCCGTGTACTTCTTT 58.867 47.619 0.00 0.00 0.00 2.52
608 614 2.096909 CGTTCAGCCGTGTACTTCTTTG 60.097 50.000 0.00 0.00 0.00 2.77
609 615 3.128349 GTTCAGCCGTGTACTTCTTTGA 58.872 45.455 0.00 0.00 0.00 2.69
610 616 3.462483 TCAGCCGTGTACTTCTTTGAA 57.538 42.857 0.00 0.00 0.00 2.69
611 617 4.002906 TCAGCCGTGTACTTCTTTGAAT 57.997 40.909 0.00 0.00 0.00 2.57
612 618 3.745975 TCAGCCGTGTACTTCTTTGAATG 59.254 43.478 0.00 0.00 0.00 2.67
613 619 3.498397 CAGCCGTGTACTTCTTTGAATGT 59.502 43.478 0.00 0.00 0.00 2.71
614 620 4.024048 CAGCCGTGTACTTCTTTGAATGTT 60.024 41.667 0.00 0.00 0.00 2.71
615 621 4.024048 AGCCGTGTACTTCTTTGAATGTTG 60.024 41.667 0.00 0.00 0.00 3.33
616 622 4.261031 GCCGTGTACTTCTTTGAATGTTGT 60.261 41.667 0.00 0.00 0.00 3.32
617 623 5.732247 GCCGTGTACTTCTTTGAATGTTGTT 60.732 40.000 0.00 0.00 0.00 2.83
618 624 6.262601 CCGTGTACTTCTTTGAATGTTGTTT 58.737 36.000 0.00 0.00 0.00 2.83
619 625 6.750039 CCGTGTACTTCTTTGAATGTTGTTTT 59.250 34.615 0.00 0.00 0.00 2.43
620 626 7.911205 CCGTGTACTTCTTTGAATGTTGTTTTA 59.089 33.333 0.00 0.00 0.00 1.52
621 627 8.943925 CGTGTACTTCTTTGAATGTTGTTTTAG 58.056 33.333 0.00 0.00 0.00 1.85
622 628 9.783256 GTGTACTTCTTTGAATGTTGTTTTAGT 57.217 29.630 0.00 0.00 0.00 2.24
632 638 8.958175 TGAATGTTGTTTTAGTTATAAAGCGG 57.042 30.769 0.00 0.00 35.51 5.52
633 639 8.024285 TGAATGTTGTTTTAGTTATAAAGCGGG 58.976 33.333 0.00 0.00 35.51 6.13
634 640 6.256912 TGTTGTTTTAGTTATAAAGCGGGG 57.743 37.500 0.00 0.00 35.51 5.73
635 641 5.769162 TGTTGTTTTAGTTATAAAGCGGGGT 59.231 36.000 0.00 0.00 35.51 4.95
636 642 5.883503 TGTTTTAGTTATAAAGCGGGGTG 57.116 39.130 0.00 0.00 35.51 4.61
637 643 5.558818 TGTTTTAGTTATAAAGCGGGGTGA 58.441 37.500 0.00 0.00 35.51 4.02
638 644 6.002704 TGTTTTAGTTATAAAGCGGGGTGAA 58.997 36.000 0.00 0.00 35.51 3.18
639 645 6.072563 TGTTTTAGTTATAAAGCGGGGTGAAC 60.073 38.462 0.00 0.00 35.51 3.18
640 646 2.624636 AGTTATAAAGCGGGGTGAACG 58.375 47.619 0.00 0.00 0.00 3.95
641 647 2.027837 AGTTATAAAGCGGGGTGAACGT 60.028 45.455 0.00 0.00 0.00 3.99
642 648 3.195396 AGTTATAAAGCGGGGTGAACGTA 59.805 43.478 0.00 0.00 0.00 3.57
643 649 2.994186 ATAAAGCGGGGTGAACGTAT 57.006 45.000 0.00 0.00 0.00 3.06
644 650 2.012937 TAAAGCGGGGTGAACGTATG 57.987 50.000 0.00 0.00 0.00 2.39
645 651 0.035739 AAAGCGGGGTGAACGTATGT 59.964 50.000 0.00 0.00 0.00 2.29
646 652 0.035739 AAGCGGGGTGAACGTATGTT 59.964 50.000 0.00 0.00 42.23 2.71
647 653 0.035739 AGCGGGGTGAACGTATGTTT 59.964 50.000 0.98 0.00 38.78 2.83
648 654 0.445043 GCGGGGTGAACGTATGTTTC 59.555 55.000 0.98 0.00 38.78 2.78
649 655 0.717224 CGGGGTGAACGTATGTTTCG 59.283 55.000 0.98 0.00 38.78 3.46
650 656 1.669502 CGGGGTGAACGTATGTTTCGA 60.670 52.381 0.98 0.00 38.78 3.71
651 657 1.728425 GGGGTGAACGTATGTTTCGAC 59.272 52.381 0.98 0.08 38.78 4.20
652 658 1.387756 GGGTGAACGTATGTTTCGACG 59.612 52.381 0.98 0.00 44.57 5.12
653 659 1.201736 GGTGAACGTATGTTTCGACGC 60.202 52.381 0.98 0.00 42.81 5.19
654 660 1.062258 TGAACGTATGTTTCGACGCC 58.938 50.000 0.98 0.00 42.81 5.68
655 661 1.336148 TGAACGTATGTTTCGACGCCT 60.336 47.619 0.98 0.00 42.81 5.52
656 662 1.723003 GAACGTATGTTTCGACGCCTT 59.277 47.619 0.98 0.00 42.81 4.35
657 663 2.634982 ACGTATGTTTCGACGCCTTA 57.365 45.000 0.00 0.00 42.81 2.69
658 664 2.523015 ACGTATGTTTCGACGCCTTAG 58.477 47.619 0.00 0.00 42.81 2.18
659 665 2.095059 ACGTATGTTTCGACGCCTTAGT 60.095 45.455 0.00 0.00 42.81 2.24
660 666 2.919229 CGTATGTTTCGACGCCTTAGTT 59.081 45.455 0.00 0.00 31.49 2.24
661 667 3.001365 CGTATGTTTCGACGCCTTAGTTC 60.001 47.826 0.00 0.00 31.49 3.01
662 668 1.411394 TGTTTCGACGCCTTAGTTCG 58.589 50.000 0.00 0.00 0.00 3.95
663 669 1.001487 TGTTTCGACGCCTTAGTTCGA 60.001 47.619 0.00 0.00 0.00 3.71
664 670 2.053627 GTTTCGACGCCTTAGTTCGAA 58.946 47.619 0.00 0.00 40.37 3.71
665 671 1.689959 TTCGACGCCTTAGTTCGAAC 58.310 50.000 20.71 20.71 37.80 3.95
666 672 0.877071 TCGACGCCTTAGTTCGAACT 59.123 50.000 31.70 31.70 42.91 3.01
667 673 2.076100 TCGACGCCTTAGTTCGAACTA 58.924 47.619 29.57 29.57 40.37 2.24
668 674 2.483877 TCGACGCCTTAGTTCGAACTAA 59.516 45.455 36.06 36.06 46.21 2.24
678 684 4.067972 AGTTCGAACTAAAGCTCAACCA 57.932 40.909 28.80 0.00 37.52 3.67
679 685 4.448210 AGTTCGAACTAAAGCTCAACCAA 58.552 39.130 28.80 0.00 37.52 3.67
680 686 4.879545 AGTTCGAACTAAAGCTCAACCAAA 59.120 37.500 28.80 0.00 37.52 3.28
681 687 5.007724 AGTTCGAACTAAAGCTCAACCAAAG 59.992 40.000 28.80 0.00 37.52 2.77
682 688 4.448210 TCGAACTAAAGCTCAACCAAAGT 58.552 39.130 0.00 0.00 0.00 2.66
683 689 4.510340 TCGAACTAAAGCTCAACCAAAGTC 59.490 41.667 0.00 0.00 0.00 3.01
684 690 4.272504 CGAACTAAAGCTCAACCAAAGTCA 59.727 41.667 0.00 0.00 0.00 3.41
685 691 5.500645 AACTAAAGCTCAACCAAAGTCAC 57.499 39.130 0.00 0.00 0.00 3.67
686 692 3.560068 ACTAAAGCTCAACCAAAGTCACG 59.440 43.478 0.00 0.00 0.00 4.35
687 693 0.663153 AAGCTCAACCAAAGTCACGC 59.337 50.000 0.00 0.00 0.00 5.34
688 694 1.166531 AGCTCAACCAAAGTCACGCC 61.167 55.000 0.00 0.00 0.00 5.68
689 695 1.166531 GCTCAACCAAAGTCACGCCT 61.167 55.000 0.00 0.00 0.00 5.52
690 696 0.868406 CTCAACCAAAGTCACGCCTC 59.132 55.000 0.00 0.00 0.00 4.70
691 697 0.534203 TCAACCAAAGTCACGCCTCC 60.534 55.000 0.00 0.00 0.00 4.30
692 698 0.535102 CAACCAAAGTCACGCCTCCT 60.535 55.000 0.00 0.00 0.00 3.69
693 699 0.182775 AACCAAAGTCACGCCTCCTT 59.817 50.000 0.00 0.00 0.00 3.36
694 700 0.182775 ACCAAAGTCACGCCTCCTTT 59.817 50.000 0.00 0.00 0.00 3.11
695 701 1.318576 CCAAAGTCACGCCTCCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
696 702 1.681264 CCAAAGTCACGCCTCCTTTTT 59.319 47.619 0.00 0.00 0.00 1.94
697 703 2.287608 CCAAAGTCACGCCTCCTTTTTC 60.288 50.000 0.00 0.00 0.00 2.29
698 704 2.618709 CAAAGTCACGCCTCCTTTTTCT 59.381 45.455 0.00 0.00 0.00 2.52
699 705 2.640316 AGTCACGCCTCCTTTTTCTT 57.360 45.000 0.00 0.00 0.00 2.52
700 706 2.932261 AGTCACGCCTCCTTTTTCTTT 58.068 42.857 0.00 0.00 0.00 2.52
701 707 4.081322 AGTCACGCCTCCTTTTTCTTTA 57.919 40.909 0.00 0.00 0.00 1.85
702 708 4.652822 AGTCACGCCTCCTTTTTCTTTAT 58.347 39.130 0.00 0.00 0.00 1.40
703 709 4.695928 AGTCACGCCTCCTTTTTCTTTATC 59.304 41.667 0.00 0.00 0.00 1.75
704 710 3.682858 TCACGCCTCCTTTTTCTTTATCG 59.317 43.478 0.00 0.00 0.00 2.92
705 711 3.007635 ACGCCTCCTTTTTCTTTATCGG 58.992 45.455 0.00 0.00 0.00 4.18
706 712 3.267483 CGCCTCCTTTTTCTTTATCGGA 58.733 45.455 0.00 0.00 0.00 4.55
707 713 3.309954 CGCCTCCTTTTTCTTTATCGGAG 59.690 47.826 0.00 0.00 38.17 4.63
710 716 5.099042 CTCCTTTTTCTTTATCGGAGGGA 57.901 43.478 0.00 0.00 35.54 4.20
711 717 5.099042 TCCTTTTTCTTTATCGGAGGGAG 57.901 43.478 0.00 0.00 0.00 4.30
712 718 4.534897 TCCTTTTTCTTTATCGGAGGGAGT 59.465 41.667 0.00 0.00 0.00 3.85
713 719 5.722923 TCCTTTTTCTTTATCGGAGGGAGTA 59.277 40.000 0.00 0.00 0.00 2.59
714 720 6.214005 TCCTTTTTCTTTATCGGAGGGAGTAA 59.786 38.462 0.00 0.00 0.00 2.24
715 721 7.054751 CCTTTTTCTTTATCGGAGGGAGTAAT 58.945 38.462 0.00 0.00 0.00 1.89
716 722 8.208903 CCTTTTTCTTTATCGGAGGGAGTAATA 58.791 37.037 0.00 0.00 0.00 0.98
717 723 9.780186 CTTTTTCTTTATCGGAGGGAGTAATAT 57.220 33.333 0.00 0.00 0.00 1.28
718 724 9.774413 TTTTTCTTTATCGGAGGGAGTAATATC 57.226 33.333 0.00 0.00 0.00 1.63
719 725 8.722622 TTTCTTTATCGGAGGGAGTAATATCT 57.277 34.615 0.00 0.00 0.00 1.98
720 726 7.704578 TCTTTATCGGAGGGAGTAATATCTG 57.295 40.000 0.00 0.00 0.00 2.90
721 727 7.239438 TCTTTATCGGAGGGAGTAATATCTGT 58.761 38.462 0.00 0.00 0.00 3.41
722 728 7.728981 TCTTTATCGGAGGGAGTAATATCTGTT 59.271 37.037 0.00 0.00 0.00 3.16
723 729 8.945195 TTTATCGGAGGGAGTAATATCTGTTA 57.055 34.615 0.00 0.00 0.00 2.41
724 730 8.945195 TTATCGGAGGGAGTAATATCTGTTAA 57.055 34.615 0.00 0.00 0.00 2.01
725 731 6.645790 TCGGAGGGAGTAATATCTGTTAAC 57.354 41.667 0.00 0.00 0.00 2.01
726 732 5.537674 TCGGAGGGAGTAATATCTGTTAACC 59.462 44.000 2.48 0.00 0.00 2.85
727 733 5.303589 CGGAGGGAGTAATATCTGTTAACCA 59.696 44.000 2.48 0.00 0.00 3.67
728 734 6.183360 CGGAGGGAGTAATATCTGTTAACCAA 60.183 42.308 2.48 0.00 0.00 3.67
729 735 6.990939 GGAGGGAGTAATATCTGTTAACCAAC 59.009 42.308 2.48 0.00 35.06 3.77
730 736 7.147532 GGAGGGAGTAATATCTGTTAACCAACT 60.148 40.741 2.48 0.00 35.56 3.16
731 737 7.793036 AGGGAGTAATATCTGTTAACCAACTC 58.207 38.462 2.48 5.56 35.56 3.01
732 738 7.402071 AGGGAGTAATATCTGTTAACCAACTCA 59.598 37.037 2.48 0.00 35.56 3.41
733 739 8.211629 GGGAGTAATATCTGTTAACCAACTCAT 58.788 37.037 2.48 0.00 35.56 2.90
742 748 9.975218 ATCTGTTAACCAACTCATATTAGGTTT 57.025 29.630 2.48 0.00 42.23 3.27
743 749 9.226606 TCTGTTAACCAACTCATATTAGGTTTG 57.773 33.333 2.48 0.00 42.23 2.93
744 750 8.927675 TGTTAACCAACTCATATTAGGTTTGT 57.072 30.769 2.48 0.00 42.23 2.83
745 751 9.357161 TGTTAACCAACTCATATTAGGTTTGTT 57.643 29.630 2.48 0.00 42.23 2.83
748 754 7.833285 ACCAACTCATATTAGGTTTGTTTGT 57.167 32.000 0.00 0.00 0.00 2.83
749 755 8.927675 ACCAACTCATATTAGGTTTGTTTGTA 57.072 30.769 0.00 0.00 0.00 2.41
750 756 9.528489 ACCAACTCATATTAGGTTTGTTTGTAT 57.472 29.630 0.00 0.00 0.00 2.29
759 765 7.883391 TTAGGTTTGTTTGTATTCTTCCACA 57.117 32.000 0.00 0.00 0.00 4.17
760 766 6.783708 AGGTTTGTTTGTATTCTTCCACAA 57.216 33.333 0.00 0.00 32.98 3.33
761 767 6.569780 AGGTTTGTTTGTATTCTTCCACAAC 58.430 36.000 0.00 0.00 34.52 3.32
762 768 6.153680 AGGTTTGTTTGTATTCTTCCACAACA 59.846 34.615 0.00 0.00 34.52 3.33
763 769 6.475402 GGTTTGTTTGTATTCTTCCACAACAG 59.525 38.462 0.00 0.00 34.52 3.16
764 770 7.254852 GTTTGTTTGTATTCTTCCACAACAGA 58.745 34.615 0.00 0.00 34.52 3.41
765 771 6.371809 TGTTTGTATTCTTCCACAACAGAC 57.628 37.500 0.00 0.00 34.52 3.51
766 772 6.119536 TGTTTGTATTCTTCCACAACAGACT 58.880 36.000 0.00 0.00 34.52 3.24
767 773 7.276658 TGTTTGTATTCTTCCACAACAGACTA 58.723 34.615 0.00 0.00 34.52 2.59
768 774 7.771361 TGTTTGTATTCTTCCACAACAGACTAA 59.229 33.333 0.00 0.00 34.52 2.24
769 775 8.617809 GTTTGTATTCTTCCACAACAGACTAAA 58.382 33.333 0.00 0.00 34.52 1.85
770 776 8.740123 TTGTATTCTTCCACAACAGACTAAAA 57.260 30.769 0.00 0.00 29.93 1.52
771 777 8.918202 TGTATTCTTCCACAACAGACTAAAAT 57.082 30.769 0.00 0.00 0.00 1.82
774 780 7.435068 TTCTTCCACAACAGACTAAAATAGC 57.565 36.000 0.00 0.00 0.00 2.97
775 781 5.637810 TCTTCCACAACAGACTAAAATAGCG 59.362 40.000 0.00 0.00 0.00 4.26
776 782 4.250464 TCCACAACAGACTAAAATAGCGG 58.750 43.478 0.00 0.00 0.00 5.52
777 783 4.020928 TCCACAACAGACTAAAATAGCGGA 60.021 41.667 0.00 0.00 0.00 5.54
778 784 4.693566 CCACAACAGACTAAAATAGCGGAA 59.306 41.667 0.00 0.00 0.00 4.30
779 785 5.354234 CCACAACAGACTAAAATAGCGGAAT 59.646 40.000 0.00 0.00 0.00 3.01
780 786 6.250819 CACAACAGACTAAAATAGCGGAATG 58.749 40.000 0.00 0.00 0.00 2.67
781 787 5.163754 ACAACAGACTAAAATAGCGGAATGC 60.164 40.000 0.00 0.00 46.98 3.56
792 798 3.680156 GGAATGCCCGCAAACTGA 58.320 55.556 0.00 0.00 0.00 3.41
793 799 1.508088 GGAATGCCCGCAAACTGAG 59.492 57.895 0.00 0.00 0.00 3.35
794 800 1.153958 GAATGCCCGCAAACTGAGC 60.154 57.895 0.00 0.00 0.00 4.26
804 810 3.375911 GCAAACTGAGCGTATGTTCTC 57.624 47.619 0.26 0.00 0.00 2.87
805 811 2.996621 GCAAACTGAGCGTATGTTCTCT 59.003 45.455 0.26 0.00 0.00 3.10
806 812 3.061429 GCAAACTGAGCGTATGTTCTCTC 59.939 47.826 0.26 0.00 0.00 3.20
807 813 2.834574 ACTGAGCGTATGTTCTCTCG 57.165 50.000 0.26 0.00 0.00 4.04
813 819 3.449322 GCGTATGTTCTCTCGCAAAAA 57.551 42.857 0.00 0.00 46.40 1.94
869 879 7.648112 GGGAAAAATAAAGTGAGAATATTCGCC 59.352 37.037 15.48 9.66 0.00 5.54
871 881 5.924475 AATAAAGTGAGAATATTCGCCGG 57.076 39.130 15.48 0.00 0.00 6.13
878 888 1.084289 GAATATTCGCCGGCATACCC 58.916 55.000 28.98 9.06 0.00 3.69
916 926 0.184933 CTGACCCCACCAAACCAGAA 59.815 55.000 0.00 0.00 0.00 3.02
917 927 0.856982 TGACCCCACCAAACCAGAAT 59.143 50.000 0.00 0.00 0.00 2.40
1036 1054 4.749310 CGACCAAGCTCAGCCGCT 62.749 66.667 0.00 0.00 43.31 5.52
1039 1057 3.130160 CCAAGCTCAGCCGCTTCC 61.130 66.667 0.00 0.00 46.68 3.46
1040 1058 3.130160 CAAGCTCAGCCGCTTCCC 61.130 66.667 0.00 0.00 46.68 3.97
1041 1059 4.767255 AAGCTCAGCCGCTTCCCG 62.767 66.667 0.00 0.00 46.68 5.14
1305 1355 1.873591 CCAATCGGCCCTCTTTATTCG 59.126 52.381 0.00 0.00 0.00 3.34
1312 1362 0.464452 CCCTCTTTATTCGGAGCCGT 59.536 55.000 8.96 0.00 40.74 5.68
1332 1383 4.982916 CCGTACCTTTATTCAGATCTTCGG 59.017 45.833 0.00 0.00 0.00 4.30
1348 1404 2.409870 CGGTTTGGGCCATCAGCTC 61.410 63.158 7.26 0.00 45.08 4.09
1360 1416 3.434167 GCCATCAGCTCTGAAATCCCTAA 60.434 47.826 3.47 0.00 43.58 2.69
1433 1498 6.403866 AGAAGTCAGATGAGTACATGATCC 57.596 41.667 0.00 0.00 36.82 3.36
1439 1511 4.021632 CAGATGAGTACATGATCCGTGGAT 60.022 45.833 0.00 0.00 36.82 3.41
1441 1513 4.848562 TGAGTACATGATCCGTGGATAC 57.151 45.455 0.00 0.00 34.60 2.24
1460 1532 2.154462 ACGAGCTTCACCATGGAAAAG 58.846 47.619 21.47 20.51 0.00 2.27
1506 1584 3.190874 CCGAAGGCTGAAGCTAGTTAAG 58.809 50.000 1.74 0.00 46.14 1.85
1576 1657 3.332919 CACTAGTTCAGCTGCAACTGAT 58.667 45.455 27.53 18.31 45.75 2.90
1583 1664 3.790091 TCAGCTGCAACTGATAGATCAC 58.210 45.455 15.74 0.00 41.72 3.06
1601 1682 6.339730 AGATCACTATCTGCTATGCTATTGC 58.660 40.000 0.00 0.00 41.08 3.56
1615 1696 3.134623 TGCTATTGCTGTACAGTAGGCAT 59.865 43.478 23.44 12.40 38.64 4.40
1618 1701 5.509840 GCTATTGCTGTACAGTAGGCATACT 60.510 44.000 23.44 4.95 38.64 2.12
1619 1702 6.294564 GCTATTGCTGTACAGTAGGCATACTA 60.295 42.308 23.44 2.56 38.64 1.82
1653 1740 7.968956 CCATCTGAGAAAATTTGATGAAGAGTG 59.031 37.037 14.04 5.82 37.33 3.51
1654 1741 8.512956 CATCTGAGAAAATTTGATGAAGAGTGT 58.487 33.333 8.92 0.00 37.33 3.55
1982 2075 3.070734 TGGAGATGGCTCTGAAGATAAGC 59.929 47.826 0.00 0.00 41.06 3.09
2207 2317 2.871022 GCTGTGCTATCTGTCATGGAAG 59.129 50.000 0.00 0.00 0.00 3.46
2221 2331 1.504359 TGGAAGCTGACGGTTTTACG 58.496 50.000 0.00 0.00 40.31 3.18
2234 2344 6.035220 TGACGGTTTTACGCATAAGATTGTAG 59.965 38.462 0.00 0.00 37.37 2.74
2236 2346 5.006358 CGGTTTTACGCATAAGATTGTAGCT 59.994 40.000 0.00 0.00 0.00 3.32
2239 2349 7.254795 GGTTTTACGCATAAGATTGTAGCTCAT 60.255 37.037 0.00 0.00 0.00 2.90
2292 2402 1.478654 GGAAGCAGGGAGTTGTTGGAA 60.479 52.381 0.00 0.00 0.00 3.53
2335 2445 2.260869 GCAGTTTGCCCGAAGAGCA 61.261 57.895 0.00 0.00 41.62 4.26
2340 2450 4.742201 TGCCCGAAGAGCACTCGC 62.742 66.667 0.00 0.00 35.30 5.03
2364 2474 3.254166 GCAGGAAAGATGAAGCTCAACAA 59.746 43.478 0.00 0.00 0.00 2.83
2368 2478 5.595952 AGGAAAGATGAAGCTCAACAACTTT 59.404 36.000 16.92 16.92 40.11 2.66
2410 2520 2.753966 CCCTTCAGGAATGCGTGCG 61.754 63.158 0.00 0.00 38.24 5.34
2503 2613 3.554692 GCCGATCTGCCGTTGACG 61.555 66.667 0.00 0.00 39.44 4.35
2521 2631 1.601759 GCCAGCTGAGAGGTTTGCA 60.602 57.895 17.39 0.00 0.00 4.08
2585 2695 4.597075 TGCAGCCCTTCATCAGGTATAATA 59.403 41.667 0.00 0.00 42.02 0.98
2586 2696 5.073008 TGCAGCCCTTCATCAGGTATAATAA 59.927 40.000 0.00 0.00 42.02 1.40
2587 2697 6.183347 GCAGCCCTTCATCAGGTATAATAAT 58.817 40.000 0.00 0.00 42.02 1.28
2588 2698 6.094603 GCAGCCCTTCATCAGGTATAATAATG 59.905 42.308 0.00 0.00 42.02 1.90
2589 2699 7.170965 CAGCCCTTCATCAGGTATAATAATGT 58.829 38.462 0.00 0.00 42.02 2.71
2590 2700 8.321353 CAGCCCTTCATCAGGTATAATAATGTA 58.679 37.037 0.00 0.00 42.02 2.29
2591 2701 8.322091 AGCCCTTCATCAGGTATAATAATGTAC 58.678 37.037 0.00 0.00 42.02 2.90
2593 2703 9.658799 CCCTTCATCAGGTATAATAATGTACTG 57.341 37.037 0.00 0.00 42.02 2.74
2594 2704 9.155975 CCTTCATCAGGTATAATAATGTACTGC 57.844 37.037 0.00 0.00 37.99 4.40
2595 2705 9.710900 CTTCATCAGGTATAATAATGTACTGCA 57.289 33.333 0.00 0.00 0.00 4.41
2637 2747 8.908786 ATTCTGTAGTGTAATTATCATGTGGG 57.091 34.615 0.00 0.00 0.00 4.61
2638 2748 6.288294 TCTGTAGTGTAATTATCATGTGGGC 58.712 40.000 0.00 0.00 0.00 5.36
2639 2749 5.995446 TGTAGTGTAATTATCATGTGGGCA 58.005 37.500 0.00 0.00 0.00 5.36
2642 2752 5.945310 AGTGTAATTATCATGTGGGCATCT 58.055 37.500 0.00 0.00 31.99 2.90
2643 2753 6.367983 AGTGTAATTATCATGTGGGCATCTT 58.632 36.000 0.00 0.00 31.99 2.40
2644 2754 6.488006 AGTGTAATTATCATGTGGGCATCTTC 59.512 38.462 0.00 0.00 31.99 2.87
2646 2756 4.736611 ATTATCATGTGGGCATCTTCCT 57.263 40.909 0.00 0.00 31.99 3.36
2651 2761 3.010027 TCATGTGGGCATCTTCCTAACAA 59.990 43.478 0.00 0.00 31.99 2.83
2657 2767 4.202567 TGGGCATCTTCCTAACAACTTTCT 60.203 41.667 0.00 0.00 0.00 2.52
2658 2768 4.767409 GGGCATCTTCCTAACAACTTTCTT 59.233 41.667 0.00 0.00 0.00 2.52
2659 2769 5.106118 GGGCATCTTCCTAACAACTTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
2660 2770 5.106118 GGCATCTTCCTAACAACTTTCTTCC 60.106 44.000 0.00 0.00 0.00 3.46
2682 2795 0.981183 TATGGTTCAGGGACTTGCGT 59.019 50.000 0.00 0.00 34.60 5.24
2691 2804 1.669440 GGACTTGCGTGTACCTGGA 59.331 57.895 0.00 0.00 0.00 3.86
2718 2831 3.507162 TCAGAAGGGTTGCTGATCAAA 57.493 42.857 0.00 0.00 36.31 2.69
2766 2879 4.214332 GCTGATTCCGATCCTATTTTCACC 59.786 45.833 0.00 0.00 0.00 4.02
2782 2899 1.412710 TCACCGCTAGATGATCAACCC 59.587 52.381 0.00 0.00 0.00 4.11
2796 2916 0.744414 CAACCCACCCTGCTACATCG 60.744 60.000 0.00 0.00 0.00 3.84
2812 2932 1.739466 CATCGATGTTCTGGTTGTGGG 59.261 52.381 17.50 0.00 0.00 4.61
2834 2954 2.426522 CTTGCTGCTGCTGGTAAACTA 58.573 47.619 17.00 0.00 40.48 2.24
2860 2980 2.045926 GCTGCACTTGACCCGGAT 60.046 61.111 0.73 0.00 0.00 4.18
2861 2981 2.401766 GCTGCACTTGACCCGGATG 61.402 63.158 0.73 0.00 0.00 3.51
2862 2982 1.003355 CTGCACTTGACCCGGATGT 60.003 57.895 0.73 0.00 0.00 3.06
2886 3006 3.111853 TGTCGACAACAGAAGATTGCT 57.888 42.857 17.62 0.00 32.81 3.91
2891 3011 2.551459 GACAACAGAAGATTGCTGTGCT 59.449 45.455 0.00 0.00 45.27 4.40
2981 3137 4.536364 TTCTTTTCAGCTTCGACAGTTG 57.464 40.909 0.00 0.00 35.04 3.16
3021 3177 1.968540 GGCCCACTGCTCACTTGTC 60.969 63.158 0.00 0.00 40.92 3.18
3029 3185 2.124903 CTGCTCACTTGTCGTACGTTT 58.875 47.619 16.05 0.00 0.00 3.60
3035 3191 6.587226 TGCTCACTTGTCGTACGTTTATTTAT 59.413 34.615 16.05 0.00 0.00 1.40
3036 3192 7.754475 TGCTCACTTGTCGTACGTTTATTTATA 59.246 33.333 16.05 0.00 0.00 0.98
3403 7135 0.462759 AAGGCATCGTAGGCTGCTTC 60.463 55.000 10.68 0.00 44.47 3.86
3410 7142 1.474478 TCGTAGGCTGCTTCTGAGAAG 59.526 52.381 17.59 17.59 0.00 2.85
3434 7166 1.098712 TTTGTGTCGCCAGGTTGACC 61.099 55.000 10.46 0.00 34.18 4.02
3438 7170 4.243008 TCGCCAGGTTGACCGCAA 62.243 61.111 0.00 0.00 42.08 4.85
3439 7171 3.726517 CGCCAGGTTGACCGCAAG 61.727 66.667 0.00 0.00 42.08 4.01
3537 7272 6.625740 CGGCCTGTCATTTTCAAGATGTAAAT 60.626 38.462 0.00 0.00 29.26 1.40
3699 7440 4.201763 GGAAGAAATCTGCGTGATTCAGTC 60.202 45.833 5.42 1.33 43.99 3.51
3719 7465 1.681166 CCAAGTGCAGAATAGCCAGCT 60.681 52.381 0.00 0.00 0.00 4.24
3744 7490 2.002586 CATTCTTCCCGCACAGTACAG 58.997 52.381 0.00 0.00 0.00 2.74
3810 7560 4.188511 CCCCTCCCCTACCCCCTC 62.189 77.778 0.00 0.00 0.00 4.30
3811 7561 4.188511 CCCTCCCCTACCCCCTCC 62.189 77.778 0.00 0.00 0.00 4.30
3812 7562 3.043404 CCTCCCCTACCCCCTCCT 61.043 72.222 0.00 0.00 0.00 3.69
3813 7563 2.658404 CCTCCCCTACCCCCTCCTT 61.658 68.421 0.00 0.00 0.00 3.36
3814 7564 1.074395 CTCCCCTACCCCCTCCTTC 60.074 68.421 0.00 0.00 0.00 3.46
3815 7565 2.446036 CCCCTACCCCCTCCTTCG 60.446 72.222 0.00 0.00 0.00 3.79
3816 7566 2.367378 CCCTACCCCCTCCTTCGT 59.633 66.667 0.00 0.00 0.00 3.85
3817 7567 1.761271 CCCTACCCCCTCCTTCGTC 60.761 68.421 0.00 0.00 0.00 4.20
3818 7568 2.125961 CCTACCCCCTCCTTCGTCG 61.126 68.421 0.00 0.00 0.00 5.12
3826 7576 4.728110 TCCTTCGTCGCCTCCCGA 62.728 66.667 0.00 0.00 45.15 5.14
3920 7670 2.184322 CAGGTGGTCGATGTCGGG 59.816 66.667 2.25 0.00 40.29 5.14
3927 7677 1.741770 GTCGATGTCGGGCAAAGCT 60.742 57.895 2.25 0.00 40.29 3.74
3959 7709 1.791230 AGGTACTGCCTCCCCTCTT 59.209 57.895 0.00 0.00 46.96 2.85
4040 7790 2.508439 CCGGATGGACAACGACGG 60.508 66.667 0.00 0.00 37.49 4.79
4106 7856 3.857764 CGTAGCCCTTCCCGATCT 58.142 61.111 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.579932 CGAGATACCGTATGCCGCT 59.420 57.895 0.00 0.00 34.38 5.52
14 15 1.781429 CATTTCTGTCGCGAGATACCG 59.219 52.381 10.24 0.00 45.19 4.02
16 17 1.523095 GGCATTTCTGTCGCGAGATAC 59.477 52.381 10.24 0.00 45.19 2.24
96 97 1.594310 GGAGGAGAGACACCACTGC 59.406 63.158 0.00 0.00 0.00 4.40
97 98 0.542938 TGGGAGGAGAGACACCACTG 60.543 60.000 0.00 0.00 0.00 3.66
98 99 0.252012 CTGGGAGGAGAGACACCACT 60.252 60.000 0.00 0.00 0.00 4.00
105 106 2.182827 CACACAATCTGGGAGGAGAGA 58.817 52.381 0.00 0.00 0.00 3.10
115 116 2.880268 TCCTGTTTGCTCACACAATCTG 59.120 45.455 0.00 0.00 0.00 2.90
116 117 3.144506 CTCCTGTTTGCTCACACAATCT 58.855 45.455 0.00 0.00 0.00 2.40
118 119 2.233271 CCTCCTGTTTGCTCACACAAT 58.767 47.619 0.00 0.00 0.00 2.71
126 127 1.870055 CGCAATGCCTCCTGTTTGCT 61.870 55.000 0.00 0.00 41.69 3.91
131 132 2.434884 CGACGCAATGCCTCCTGT 60.435 61.111 0.00 0.00 0.00 4.00
132 133 2.125552 TCGACGCAATGCCTCCTG 60.126 61.111 0.00 0.00 0.00 3.86
133 134 1.320344 TACTCGACGCAATGCCTCCT 61.320 55.000 0.00 0.00 0.00 3.69
136 137 1.519455 GCTACTCGACGCAATGCCT 60.519 57.895 0.00 0.00 0.00 4.75
138 139 1.920762 GAGCTACTCGACGCAATGC 59.079 57.895 0.00 0.00 0.00 3.56
148 149 1.516603 GGGCACGTTCGAGCTACTC 60.517 63.158 13.25 0.00 0.00 2.59
149 150 1.935327 GAGGGCACGTTCGAGCTACT 61.935 60.000 13.25 11.63 0.00 2.57
158 159 1.878656 CTCCGAAGAGAGGGCACGTT 61.879 60.000 0.00 0.00 43.39 3.99
160 161 2.492090 CTCCGAAGAGAGGGCACG 59.508 66.667 0.00 0.00 43.39 5.34
171 172 3.387947 GGACGCTTCCCCTCCGAA 61.388 66.667 0.00 0.00 35.57 4.30
181 183 0.608640 AAACTCGGATCAGGACGCTT 59.391 50.000 0.00 0.00 0.00 4.68
182 184 0.108615 CAAACTCGGATCAGGACGCT 60.109 55.000 0.00 0.00 0.00 5.07
189 191 1.205655 CAGAGCTCCAAACTCGGATCA 59.794 52.381 10.93 0.00 39.23 2.92
190 192 1.472376 CCAGAGCTCCAAACTCGGATC 60.472 57.143 10.93 0.00 39.23 3.36
196 198 0.392193 CGATGCCAGAGCTCCAAACT 60.392 55.000 10.93 0.00 40.80 2.66
197 199 0.674895 ACGATGCCAGAGCTCCAAAC 60.675 55.000 10.93 0.00 40.80 2.93
199 201 1.219124 GACGATGCCAGAGCTCCAA 59.781 57.895 10.93 0.00 40.80 3.53
203 205 3.763356 TGCGACGATGCCAGAGCT 61.763 61.111 0.00 0.00 40.80 4.09
204 206 3.558411 GTGCGACGATGCCAGAGC 61.558 66.667 0.00 0.00 40.48 4.09
209 211 3.195698 GGGAAGTGCGACGATGCC 61.196 66.667 0.00 0.00 0.00 4.40
213 215 3.691342 CCAGGGGAAGTGCGACGA 61.691 66.667 0.00 0.00 0.00 4.20
214 216 4.003788 ACCAGGGGAAGTGCGACG 62.004 66.667 0.00 0.00 0.00 5.12
215 217 2.358737 CACCAGGGGAAGTGCGAC 60.359 66.667 0.00 0.00 0.00 5.19
216 218 3.636231 CCACCAGGGGAAGTGCGA 61.636 66.667 0.00 0.00 32.48 5.10
221 223 4.101448 CGAGGCCACCAGGGGAAG 62.101 72.222 5.01 0.00 37.04 3.46
247 249 4.778143 CCTTCGGCAACTCCCCCG 62.778 72.222 0.00 0.00 45.64 5.73
262 264 2.930562 AAGGCACGGAGCTTCCCT 60.931 61.111 2.14 0.00 44.79 4.20
263 265 2.747855 CAAGGCACGGAGCTTCCC 60.748 66.667 2.14 0.00 44.79 3.97
265 267 3.435186 GCCAAGGCACGGAGCTTC 61.435 66.667 6.14 0.00 44.79 3.86
284 286 0.322098 ATGGGTTTTGCCATCGTCGA 60.322 50.000 0.00 0.00 39.65 4.20
299 301 0.609131 AAGAGCACGAAACCCATGGG 60.609 55.000 30.23 30.23 42.03 4.00
302 304 3.950397 TCATAAAGAGCACGAAACCCAT 58.050 40.909 0.00 0.00 0.00 4.00
308 310 4.621460 CGACTTCTTCATAAAGAGCACGAA 59.379 41.667 0.00 0.00 42.36 3.85
311 313 5.177696 ACAACGACTTCTTCATAAAGAGCAC 59.822 40.000 0.00 0.00 42.36 4.40
319 321 5.209818 AGAACCACAACGACTTCTTCATA 57.790 39.130 0.00 0.00 0.00 2.15
320 322 4.073293 AGAACCACAACGACTTCTTCAT 57.927 40.909 0.00 0.00 0.00 2.57
327 329 2.959707 AGAGAGAAGAACCACAACGACT 59.040 45.455 0.00 0.00 0.00 4.18
357 359 2.355108 CGGACAATGTCTTCACCCAGAT 60.355 50.000 13.53 0.00 32.47 2.90
358 360 1.001974 CGGACAATGTCTTCACCCAGA 59.998 52.381 13.53 0.00 32.47 3.86
359 361 1.442769 CGGACAATGTCTTCACCCAG 58.557 55.000 13.53 0.00 32.47 4.45
361 363 0.036306 ACCGGACAATGTCTTCACCC 59.964 55.000 9.46 0.00 32.47 4.61
393 397 0.170561 ACGGTGTAGAGTGTCGATGC 59.829 55.000 0.00 0.00 0.00 3.91
395 399 2.419324 GAGAACGGTGTAGAGTGTCGAT 59.581 50.000 0.00 0.00 0.00 3.59
396 400 1.802960 GAGAACGGTGTAGAGTGTCGA 59.197 52.381 0.00 0.00 0.00 4.20
401 405 2.438411 CAGAGGAGAACGGTGTAGAGT 58.562 52.381 0.00 0.00 0.00 3.24
406 410 1.913762 CCCCAGAGGAGAACGGTGT 60.914 63.158 0.00 0.00 38.24 4.16
408 412 2.284699 CCCCCAGAGGAGAACGGT 60.285 66.667 0.00 0.00 38.24 4.83
411 415 0.394899 CAATGCCCCCAGAGGAGAAC 60.395 60.000 0.00 0.00 38.24 3.01
414 418 2.123982 GCAATGCCCCCAGAGGAG 60.124 66.667 0.00 0.00 38.24 3.69
431 437 2.600475 GCACACGTAACCACCACGG 61.600 63.158 0.00 0.00 43.59 4.94
433 439 1.425412 CTAGCACACGTAACCACCAC 58.575 55.000 0.00 0.00 0.00 4.16
437 443 1.133598 CGATCCTAGCACACGTAACCA 59.866 52.381 0.00 0.00 0.00 3.67
439 445 2.556534 ACGATCCTAGCACACGTAAC 57.443 50.000 0.00 0.00 35.49 2.50
443 449 0.657659 CGCTACGATCCTAGCACACG 60.658 60.000 19.53 4.05 39.40 4.49
446 452 0.317938 CCACGCTACGATCCTAGCAC 60.318 60.000 19.53 0.00 39.40 4.40
454 460 2.234913 GAACACCCCCACGCTACGAT 62.235 60.000 0.00 0.00 0.00 3.73
455 461 2.918802 AACACCCCCACGCTACGA 60.919 61.111 0.00 0.00 0.00 3.43
456 462 2.433664 GAACACCCCCACGCTACG 60.434 66.667 0.00 0.00 0.00 3.51
457 463 0.322187 AATGAACACCCCCACGCTAC 60.322 55.000 0.00 0.00 0.00 3.58
458 464 0.402504 AAATGAACACCCCCACGCTA 59.597 50.000 0.00 0.00 0.00 4.26
459 465 0.893727 GAAATGAACACCCCCACGCT 60.894 55.000 0.00 0.00 0.00 5.07
460 466 0.893727 AGAAATGAACACCCCCACGC 60.894 55.000 0.00 0.00 0.00 5.34
461 467 1.539827 GAAGAAATGAACACCCCCACG 59.460 52.381 0.00 0.00 0.00 4.94
462 468 1.893137 GGAAGAAATGAACACCCCCAC 59.107 52.381 0.00 0.00 0.00 4.61
463 469 1.203125 GGGAAGAAATGAACACCCCCA 60.203 52.381 0.00 0.00 32.98 4.96
467 473 1.068541 GCACGGGAAGAAATGAACACC 60.069 52.381 0.00 0.00 0.00 4.16
472 478 0.320374 ACGAGCACGGGAAGAAATGA 59.680 50.000 8.74 0.00 44.46 2.57
473 479 1.156736 AACGAGCACGGGAAGAAATG 58.843 50.000 8.74 0.00 44.46 2.32
475 481 1.068895 TGTAACGAGCACGGGAAGAAA 59.931 47.619 8.74 0.00 44.46 2.52
480 486 1.674441 CTATCTGTAACGAGCACGGGA 59.326 52.381 8.74 0.00 44.46 5.14
483 489 1.113253 CGCTATCTGTAACGAGCACG 58.887 55.000 0.76 0.76 45.75 5.34
490 496 2.795470 GCCAGCTTACGCTATCTGTAAC 59.205 50.000 0.00 0.00 46.99 2.50
493 499 0.249073 CGCCAGCTTACGCTATCTGT 60.249 55.000 0.00 0.00 46.99 3.41
494 500 0.249073 ACGCCAGCTTACGCTATCTG 60.249 55.000 5.09 0.00 46.99 2.90
495 501 1.267261 CTACGCCAGCTTACGCTATCT 59.733 52.381 5.09 0.00 46.99 1.98
497 503 1.001597 GACTACGCCAGCTTACGCTAT 60.002 52.381 5.09 0.00 46.99 2.97
501 507 3.978373 CGACTACGCCAGCTTACG 58.022 61.111 3.66 3.66 0.00 3.18
511 517 1.800315 CAGAACCCACGCGACTACG 60.800 63.158 15.93 0.00 42.93 3.51
512 518 2.092882 GCAGAACCCACGCGACTAC 61.093 63.158 15.93 0.00 0.00 2.73
513 519 2.260434 GCAGAACCCACGCGACTA 59.740 61.111 15.93 0.00 0.00 2.59
518 524 2.711185 GAAACACGCAGAACCCACGC 62.711 60.000 0.00 0.00 0.00 5.34
519 525 1.278637 GAAACACGCAGAACCCACG 59.721 57.895 0.00 0.00 0.00 4.94
520 526 1.278637 CGAAACACGCAGAACCCAC 59.721 57.895 0.00 0.00 34.51 4.61
521 527 1.890041 CCGAAACACGCAGAACCCA 60.890 57.895 0.00 0.00 41.07 4.51
522 528 2.613506 CCCGAAACACGCAGAACCC 61.614 63.158 0.00 0.00 41.07 4.11
524 530 1.392510 GATACCCGAAACACGCAGAAC 59.607 52.381 0.00 0.00 41.07 3.01
529 535 1.659098 CTTGAGATACCCGAAACACGC 59.341 52.381 0.00 0.00 41.07 5.34
531 537 3.797256 CGATCTTGAGATACCCGAAACAC 59.203 47.826 0.00 0.00 34.37 3.32
535 541 2.662866 ACCGATCTTGAGATACCCGAA 58.337 47.619 0.00 0.00 34.37 4.30
536 542 2.359981 ACCGATCTTGAGATACCCGA 57.640 50.000 0.00 0.00 34.37 5.14
537 543 3.454371 AAACCGATCTTGAGATACCCG 57.546 47.619 0.00 0.00 34.37 5.28
539 545 7.039882 TCTTACAAAACCGATCTTGAGATACC 58.960 38.462 0.00 0.00 34.37 2.73
540 546 7.222999 CCTCTTACAAAACCGATCTTGAGATAC 59.777 40.741 0.00 0.00 34.37 2.24
548 554 3.581332 TGGTCCTCTTACAAAACCGATCT 59.419 43.478 0.00 0.00 32.50 2.75
549 555 3.683340 GTGGTCCTCTTACAAAACCGATC 59.317 47.826 0.00 0.00 32.50 3.69
567 573 1.072331 GACACAAGATGGTGAGGTGGT 59.928 52.381 0.00 0.00 41.32 4.16
568 574 1.813513 GACACAAGATGGTGAGGTGG 58.186 55.000 0.00 0.00 41.32 4.61
569 575 1.270305 ACGACACAAGATGGTGAGGTG 60.270 52.381 0.00 0.00 41.32 4.00
570 576 1.048601 ACGACACAAGATGGTGAGGT 58.951 50.000 0.00 0.00 41.32 3.85
571 577 2.069273 GAACGACACAAGATGGTGAGG 58.931 52.381 0.00 0.00 41.32 3.86
572 578 2.733552 CTGAACGACACAAGATGGTGAG 59.266 50.000 0.00 0.00 41.32 3.51
573 579 2.754472 CTGAACGACACAAGATGGTGA 58.246 47.619 0.00 0.00 41.32 4.02
574 580 1.195448 GCTGAACGACACAAGATGGTG 59.805 52.381 0.00 0.00 44.35 4.17
575 581 1.512926 GCTGAACGACACAAGATGGT 58.487 50.000 0.00 0.00 0.00 3.55
576 582 0.798776 GGCTGAACGACACAAGATGG 59.201 55.000 0.00 0.00 0.00 3.51
577 583 0.439985 CGGCTGAACGACACAAGATG 59.560 55.000 0.00 0.00 35.47 2.90
578 584 0.033504 ACGGCTGAACGACACAAGAT 59.966 50.000 0.00 0.00 37.61 2.40
579 585 0.874175 CACGGCTGAACGACACAAGA 60.874 55.000 0.00 0.00 37.61 3.02
580 586 1.151777 ACACGGCTGAACGACACAAG 61.152 55.000 0.00 0.00 37.61 3.16
581 587 0.102663 TACACGGCTGAACGACACAA 59.897 50.000 0.00 0.00 37.61 3.33
582 588 0.595567 GTACACGGCTGAACGACACA 60.596 55.000 0.00 0.00 37.61 3.72
583 589 0.318445 AGTACACGGCTGAACGACAC 60.318 55.000 0.00 0.00 37.61 3.67
584 590 0.386476 AAGTACACGGCTGAACGACA 59.614 50.000 0.00 0.00 37.61 4.35
585 591 1.058404 GAAGTACACGGCTGAACGAC 58.942 55.000 0.00 0.00 37.61 4.34
586 592 0.956633 AGAAGTACACGGCTGAACGA 59.043 50.000 0.00 0.00 37.61 3.85
587 593 1.779569 AAGAAGTACACGGCTGAACG 58.220 50.000 0.00 0.00 40.31 3.95
588 594 3.128349 TCAAAGAAGTACACGGCTGAAC 58.872 45.455 0.00 0.00 0.00 3.18
589 595 3.462483 TCAAAGAAGTACACGGCTGAA 57.538 42.857 0.00 0.00 0.00 3.02
590 596 3.462483 TTCAAAGAAGTACACGGCTGA 57.538 42.857 0.00 0.00 0.00 4.26
591 597 3.498397 ACATTCAAAGAAGTACACGGCTG 59.502 43.478 0.00 0.00 0.00 4.85
592 598 3.740115 ACATTCAAAGAAGTACACGGCT 58.260 40.909 0.00 0.00 0.00 5.52
593 599 4.219033 CAACATTCAAAGAAGTACACGGC 58.781 43.478 0.00 0.00 0.00 5.68
594 600 5.418310 ACAACATTCAAAGAAGTACACGG 57.582 39.130 0.00 0.00 0.00 4.94
595 601 7.734538 AAAACAACATTCAAAGAAGTACACG 57.265 32.000 0.00 0.00 0.00 4.49
596 602 9.783256 ACTAAAACAACATTCAAAGAAGTACAC 57.217 29.630 0.00 0.00 0.00 2.90
606 612 9.400638 CCGCTTTATAACTAAAACAACATTCAA 57.599 29.630 0.00 0.00 0.00 2.69
607 613 8.024285 CCCGCTTTATAACTAAAACAACATTCA 58.976 33.333 0.00 0.00 0.00 2.57
608 614 7.486870 CCCCGCTTTATAACTAAAACAACATTC 59.513 37.037 0.00 0.00 0.00 2.67
609 615 7.039574 ACCCCGCTTTATAACTAAAACAACATT 60.040 33.333 0.00 0.00 0.00 2.71
610 616 6.434965 ACCCCGCTTTATAACTAAAACAACAT 59.565 34.615 0.00 0.00 0.00 2.71
611 617 5.769162 ACCCCGCTTTATAACTAAAACAACA 59.231 36.000 0.00 0.00 0.00 3.33
612 618 6.072563 TCACCCCGCTTTATAACTAAAACAAC 60.073 38.462 0.00 0.00 0.00 3.32
613 619 6.002704 TCACCCCGCTTTATAACTAAAACAA 58.997 36.000 0.00 0.00 0.00 2.83
614 620 5.558818 TCACCCCGCTTTATAACTAAAACA 58.441 37.500 0.00 0.00 0.00 2.83
615 621 6.317088 GTTCACCCCGCTTTATAACTAAAAC 58.683 40.000 0.00 0.00 0.00 2.43
616 622 5.122082 CGTTCACCCCGCTTTATAACTAAAA 59.878 40.000 0.00 0.00 0.00 1.52
617 623 4.630940 CGTTCACCCCGCTTTATAACTAAA 59.369 41.667 0.00 0.00 0.00 1.85
618 624 4.183101 CGTTCACCCCGCTTTATAACTAA 58.817 43.478 0.00 0.00 0.00 2.24
619 625 3.195396 ACGTTCACCCCGCTTTATAACTA 59.805 43.478 0.00 0.00 0.00 2.24
620 626 2.027837 ACGTTCACCCCGCTTTATAACT 60.028 45.455 0.00 0.00 0.00 2.24
621 627 2.349590 ACGTTCACCCCGCTTTATAAC 58.650 47.619 0.00 0.00 0.00 1.89
622 628 2.766345 ACGTTCACCCCGCTTTATAA 57.234 45.000 0.00 0.00 0.00 0.98
623 629 3.132646 ACATACGTTCACCCCGCTTTATA 59.867 43.478 0.00 0.00 0.00 0.98
624 630 2.093341 ACATACGTTCACCCCGCTTTAT 60.093 45.455 0.00 0.00 0.00 1.40
625 631 1.275856 ACATACGTTCACCCCGCTTTA 59.724 47.619 0.00 0.00 0.00 1.85
626 632 0.035739 ACATACGTTCACCCCGCTTT 59.964 50.000 0.00 0.00 0.00 3.51
627 633 0.035739 AACATACGTTCACCCCGCTT 59.964 50.000 0.00 0.00 0.00 4.68
628 634 0.035739 AAACATACGTTCACCCCGCT 59.964 50.000 0.00 0.00 32.91 5.52
629 635 0.445043 GAAACATACGTTCACCCCGC 59.555 55.000 0.00 0.00 32.91 6.13
630 636 0.717224 CGAAACATACGTTCACCCCG 59.283 55.000 0.00 0.00 32.91 5.73
631 637 1.728425 GTCGAAACATACGTTCACCCC 59.272 52.381 0.00 0.00 32.91 4.95
632 638 1.387756 CGTCGAAACATACGTTCACCC 59.612 52.381 0.00 0.00 32.91 4.61
633 639 1.201736 GCGTCGAAACATACGTTCACC 60.202 52.381 0.00 0.00 41.10 4.02
634 640 1.201736 GGCGTCGAAACATACGTTCAC 60.202 52.381 0.00 0.00 41.10 3.18
635 641 1.062258 GGCGTCGAAACATACGTTCA 58.938 50.000 0.00 0.00 41.10 3.18
636 642 1.343506 AGGCGTCGAAACATACGTTC 58.656 50.000 0.00 0.00 41.10 3.95
637 643 1.787012 AAGGCGTCGAAACATACGTT 58.213 45.000 0.00 0.00 41.10 3.99
638 644 2.095059 ACTAAGGCGTCGAAACATACGT 60.095 45.455 0.00 0.00 41.10 3.57
639 645 2.523015 ACTAAGGCGTCGAAACATACG 58.477 47.619 0.00 0.00 41.92 3.06
640 646 3.001365 CGAACTAAGGCGTCGAAACATAC 60.001 47.826 0.00 0.00 0.00 2.39
641 647 3.119884 TCGAACTAAGGCGTCGAAACATA 60.120 43.478 0.00 0.00 0.00 2.29
642 648 1.990563 CGAACTAAGGCGTCGAAACAT 59.009 47.619 0.00 0.00 0.00 2.71
643 649 1.001487 TCGAACTAAGGCGTCGAAACA 60.001 47.619 0.00 0.00 0.00 2.83
644 650 1.689959 TCGAACTAAGGCGTCGAAAC 58.310 50.000 0.00 0.00 0.00 2.78
645 651 2.053627 GTTCGAACTAAGGCGTCGAAA 58.946 47.619 20.97 0.00 42.99 3.46
646 652 1.267806 AGTTCGAACTAAGGCGTCGAA 59.732 47.619 28.80 3.79 39.92 3.71
647 653 0.877071 AGTTCGAACTAAGGCGTCGA 59.123 50.000 28.80 0.00 37.52 4.20
648 654 2.532531 TAGTTCGAACTAAGGCGTCG 57.467 50.000 30.75 0.00 38.49 5.12
655 661 5.603596 TGGTTGAGCTTTAGTTCGAACTAA 58.396 37.500 35.56 35.56 46.58 2.24
656 662 5.204409 TGGTTGAGCTTTAGTTCGAACTA 57.796 39.130 29.57 29.57 40.37 2.24
657 663 4.067972 TGGTTGAGCTTTAGTTCGAACT 57.932 40.909 31.70 31.70 42.91 3.01
658 664 4.806342 TTGGTTGAGCTTTAGTTCGAAC 57.194 40.909 20.71 20.71 0.00 3.95
659 665 4.879545 ACTTTGGTTGAGCTTTAGTTCGAA 59.120 37.500 0.00 0.00 0.00 3.71
660 666 4.448210 ACTTTGGTTGAGCTTTAGTTCGA 58.552 39.130 0.00 0.00 0.00 3.71
661 667 4.272504 TGACTTTGGTTGAGCTTTAGTTCG 59.727 41.667 0.00 0.00 0.00 3.95
662 668 5.511571 GTGACTTTGGTTGAGCTTTAGTTC 58.488 41.667 0.00 0.00 0.00 3.01
663 669 4.035208 CGTGACTTTGGTTGAGCTTTAGTT 59.965 41.667 0.00 0.00 0.00 2.24
664 670 3.560068 CGTGACTTTGGTTGAGCTTTAGT 59.440 43.478 0.00 0.00 0.00 2.24
665 671 3.607078 GCGTGACTTTGGTTGAGCTTTAG 60.607 47.826 0.00 0.00 0.00 1.85
666 672 2.289547 GCGTGACTTTGGTTGAGCTTTA 59.710 45.455 0.00 0.00 0.00 1.85
667 673 1.065551 GCGTGACTTTGGTTGAGCTTT 59.934 47.619 0.00 0.00 0.00 3.51
668 674 0.663153 GCGTGACTTTGGTTGAGCTT 59.337 50.000 0.00 0.00 0.00 3.74
669 675 1.166531 GGCGTGACTTTGGTTGAGCT 61.167 55.000 0.00 0.00 0.00 4.09
670 676 1.166531 AGGCGTGACTTTGGTTGAGC 61.167 55.000 0.00 0.00 0.00 4.26
671 677 0.868406 GAGGCGTGACTTTGGTTGAG 59.132 55.000 0.00 0.00 0.00 3.02
672 678 0.534203 GGAGGCGTGACTTTGGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
673 679 0.535102 AGGAGGCGTGACTTTGGTTG 60.535 55.000 0.00 0.00 0.00 3.77
674 680 0.182775 AAGGAGGCGTGACTTTGGTT 59.817 50.000 0.00 0.00 0.00 3.67
675 681 0.182775 AAAGGAGGCGTGACTTTGGT 59.817 50.000 5.24 0.00 33.53 3.67
676 682 1.318576 AAAAGGAGGCGTGACTTTGG 58.681 50.000 6.48 0.00 34.89 3.28
677 683 2.618709 AGAAAAAGGAGGCGTGACTTTG 59.381 45.455 6.48 0.00 34.89 2.77
678 684 2.932261 AGAAAAAGGAGGCGTGACTTT 58.068 42.857 1.13 1.13 36.09 2.66
679 685 2.640316 AGAAAAAGGAGGCGTGACTT 57.360 45.000 0.00 0.00 0.00 3.01
680 686 2.640316 AAGAAAAAGGAGGCGTGACT 57.360 45.000 0.00 0.00 0.00 3.41
681 687 4.435651 CGATAAAGAAAAAGGAGGCGTGAC 60.436 45.833 0.00 0.00 0.00 3.67
682 688 3.682858 CGATAAAGAAAAAGGAGGCGTGA 59.317 43.478 0.00 0.00 0.00 4.35
683 689 3.181510 CCGATAAAGAAAAAGGAGGCGTG 60.182 47.826 0.00 0.00 0.00 5.34
684 690 3.007635 CCGATAAAGAAAAAGGAGGCGT 58.992 45.455 0.00 0.00 0.00 5.68
685 691 3.267483 TCCGATAAAGAAAAAGGAGGCG 58.733 45.455 0.00 0.00 0.00 5.52
686 692 4.884458 CTCCGATAAAGAAAAAGGAGGC 57.116 45.455 1.62 0.00 40.98 4.70
688 694 5.099042 TCCCTCCGATAAAGAAAAAGGAG 57.901 43.478 2.55 2.55 43.46 3.69
689 695 4.534897 ACTCCCTCCGATAAAGAAAAAGGA 59.465 41.667 0.00 0.00 0.00 3.36
690 696 4.844884 ACTCCCTCCGATAAAGAAAAAGG 58.155 43.478 0.00 0.00 0.00 3.11
691 697 9.780186 ATATTACTCCCTCCGATAAAGAAAAAG 57.220 33.333 0.00 0.00 0.00 2.27
692 698 9.774413 GATATTACTCCCTCCGATAAAGAAAAA 57.226 33.333 0.00 0.00 0.00 1.94
693 699 9.155785 AGATATTACTCCCTCCGATAAAGAAAA 57.844 33.333 0.00 0.00 0.00 2.29
694 700 8.585881 CAGATATTACTCCCTCCGATAAAGAAA 58.414 37.037 0.00 0.00 0.00 2.52
695 701 7.728981 ACAGATATTACTCCCTCCGATAAAGAA 59.271 37.037 0.00 0.00 0.00 2.52
696 702 7.239438 ACAGATATTACTCCCTCCGATAAAGA 58.761 38.462 0.00 0.00 0.00 2.52
697 703 7.469537 ACAGATATTACTCCCTCCGATAAAG 57.530 40.000 0.00 0.00 0.00 1.85
698 704 7.850935 AACAGATATTACTCCCTCCGATAAA 57.149 36.000 0.00 0.00 0.00 1.40
699 705 8.800332 GTTAACAGATATTACTCCCTCCGATAA 58.200 37.037 0.00 0.00 0.00 1.75
700 706 7.395489 GGTTAACAGATATTACTCCCTCCGATA 59.605 40.741 8.10 0.00 0.00 2.92
701 707 6.210984 GGTTAACAGATATTACTCCCTCCGAT 59.789 42.308 8.10 0.00 0.00 4.18
702 708 5.537674 GGTTAACAGATATTACTCCCTCCGA 59.462 44.000 8.10 0.00 0.00 4.55
703 709 5.303589 TGGTTAACAGATATTACTCCCTCCG 59.696 44.000 8.10 0.00 0.00 4.63
704 710 6.742559 TGGTTAACAGATATTACTCCCTCC 57.257 41.667 8.10 0.00 0.00 4.30
705 711 7.793036 AGTTGGTTAACAGATATTACTCCCTC 58.207 38.462 8.10 0.00 39.30 4.30
706 712 7.402071 TGAGTTGGTTAACAGATATTACTCCCT 59.598 37.037 8.10 0.00 39.30 4.20
707 713 7.562135 TGAGTTGGTTAACAGATATTACTCCC 58.438 38.462 8.10 0.00 39.30 4.30
716 722 9.975218 AAACCTAATATGAGTTGGTTAACAGAT 57.025 29.630 8.10 0.00 39.74 2.90
717 723 9.226606 CAAACCTAATATGAGTTGGTTAACAGA 57.773 33.333 8.10 0.00 39.74 3.41
718 724 9.010029 ACAAACCTAATATGAGTTGGTTAACAG 57.990 33.333 8.10 0.00 39.74 3.16
719 725 8.927675 ACAAACCTAATATGAGTTGGTTAACA 57.072 30.769 8.10 0.00 39.74 2.41
722 728 9.357161 ACAAACAAACCTAATATGAGTTGGTTA 57.643 29.630 6.15 0.00 36.79 2.85
723 729 8.245195 ACAAACAAACCTAATATGAGTTGGTT 57.755 30.769 0.00 0.00 38.90 3.67
724 730 7.833285 ACAAACAAACCTAATATGAGTTGGT 57.167 32.000 0.00 0.00 0.00 3.67
733 739 9.575868 TGTGGAAGAATACAAACAAACCTAATA 57.424 29.630 0.00 0.00 0.00 0.98
734 740 8.472007 TGTGGAAGAATACAAACAAACCTAAT 57.528 30.769 0.00 0.00 0.00 1.73
735 741 7.883391 TGTGGAAGAATACAAACAAACCTAA 57.117 32.000 0.00 0.00 0.00 2.69
736 742 7.339721 TGTTGTGGAAGAATACAAACAAACCTA 59.660 33.333 0.00 0.00 38.40 3.08
737 743 6.153680 TGTTGTGGAAGAATACAAACAAACCT 59.846 34.615 0.00 0.00 38.40 3.50
738 744 6.334202 TGTTGTGGAAGAATACAAACAAACC 58.666 36.000 0.00 0.00 38.40 3.27
739 745 7.220108 GTCTGTTGTGGAAGAATACAAACAAAC 59.780 37.037 0.00 0.00 38.40 2.93
740 746 7.122055 AGTCTGTTGTGGAAGAATACAAACAAA 59.878 33.333 0.00 0.00 38.40 2.83
741 747 6.601613 AGTCTGTTGTGGAAGAATACAAACAA 59.398 34.615 0.00 0.00 38.40 2.83
742 748 6.119536 AGTCTGTTGTGGAAGAATACAAACA 58.880 36.000 0.00 0.00 38.40 2.83
743 749 6.619801 AGTCTGTTGTGGAAGAATACAAAC 57.380 37.500 0.00 0.00 38.40 2.93
744 750 8.740123 TTTAGTCTGTTGTGGAAGAATACAAA 57.260 30.769 0.00 0.00 38.40 2.83
745 751 8.740123 TTTTAGTCTGTTGTGGAAGAATACAA 57.260 30.769 0.00 0.00 34.66 2.41
746 752 8.918202 ATTTTAGTCTGTTGTGGAAGAATACA 57.082 30.769 0.00 0.00 0.00 2.29
748 754 9.162764 GCTATTTTAGTCTGTTGTGGAAGAATA 57.837 33.333 0.00 0.00 0.00 1.75
749 755 7.148407 CGCTATTTTAGTCTGTTGTGGAAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
750 756 6.147164 CGCTATTTTAGTCTGTTGTGGAAGAA 59.853 38.462 0.00 0.00 0.00 2.52
751 757 5.637810 CGCTATTTTAGTCTGTTGTGGAAGA 59.362 40.000 0.00 0.00 0.00 2.87
752 758 5.163854 CCGCTATTTTAGTCTGTTGTGGAAG 60.164 44.000 0.00 0.00 0.00 3.46
753 759 4.693566 CCGCTATTTTAGTCTGTTGTGGAA 59.306 41.667 0.00 0.00 0.00 3.53
754 760 4.020928 TCCGCTATTTTAGTCTGTTGTGGA 60.021 41.667 0.00 0.00 0.00 4.02
755 761 4.250464 TCCGCTATTTTAGTCTGTTGTGG 58.750 43.478 0.00 0.00 0.00 4.17
756 762 5.856126 TTCCGCTATTTTAGTCTGTTGTG 57.144 39.130 0.00 0.00 0.00 3.33
757 763 5.163754 GCATTCCGCTATTTTAGTCTGTTGT 60.164 40.000 0.00 0.00 37.77 3.32
758 764 5.266242 GCATTCCGCTATTTTAGTCTGTTG 58.734 41.667 0.00 0.00 37.77 3.33
759 765 4.335594 GGCATTCCGCTATTTTAGTCTGTT 59.664 41.667 0.00 0.00 41.91 3.16
760 766 3.877508 GGCATTCCGCTATTTTAGTCTGT 59.122 43.478 0.00 0.00 41.91 3.41
761 767 3.251004 GGGCATTCCGCTATTTTAGTCTG 59.749 47.826 0.00 0.00 41.91 3.51
762 768 3.477530 GGGCATTCCGCTATTTTAGTCT 58.522 45.455 0.00 0.00 41.91 3.24
763 769 3.898517 GGGCATTCCGCTATTTTAGTC 57.101 47.619 0.00 0.00 41.91 2.59
775 781 1.508088 CTCAGTTTGCGGGCATTCC 59.492 57.895 0.00 0.00 0.00 3.01
776 782 1.153958 GCTCAGTTTGCGGGCATTC 60.154 57.895 0.00 0.00 0.00 2.67
777 783 2.964978 GCTCAGTTTGCGGGCATT 59.035 55.556 0.00 0.00 0.00 3.56
784 790 2.996621 AGAGAACATACGCTCAGTTTGC 59.003 45.455 0.00 0.00 35.58 3.68
785 791 3.301906 CGAGAGAACATACGCTCAGTTTG 59.698 47.826 0.00 0.00 36.72 2.93
786 792 3.502920 CGAGAGAACATACGCTCAGTTT 58.497 45.455 0.00 0.00 36.72 2.66
787 793 2.732597 GCGAGAGAACATACGCTCAGTT 60.733 50.000 0.00 0.00 46.06 3.16
788 794 1.202200 GCGAGAGAACATACGCTCAGT 60.202 52.381 0.00 0.00 46.06 3.41
789 795 1.471964 GCGAGAGAACATACGCTCAG 58.528 55.000 0.00 0.00 46.06 3.35
790 796 3.624305 GCGAGAGAACATACGCTCA 57.376 52.632 0.00 0.00 46.06 4.26
817 823 4.842574 ACCACAACTTTGGCTCAATTTTT 58.157 34.783 0.00 0.00 40.77 1.94
818 824 4.486125 ACCACAACTTTGGCTCAATTTT 57.514 36.364 0.00 0.00 40.77 1.82
822 828 2.159310 CGAAACCACAACTTTGGCTCAA 60.159 45.455 0.00 0.00 40.77 3.02
829 835 4.538746 TTTTTCCCGAAACCACAACTTT 57.461 36.364 0.00 0.00 0.00 2.66
832 838 6.019398 CACTTTATTTTTCCCGAAACCACAAC 60.019 38.462 0.00 0.00 0.00 3.32
833 839 6.043411 CACTTTATTTTTCCCGAAACCACAA 58.957 36.000 0.00 0.00 0.00 3.33
869 879 3.362581 CTGTGTACAGGGTATGCCG 57.637 57.895 0.00 0.00 40.20 5.69
878 888 1.738099 GCGGTCAGCCTGTGTACAG 60.738 63.158 0.00 5.05 43.40 2.74
916 926 2.808958 CGTTTCGCGCGGGAATGAT 61.809 57.895 34.59 0.00 0.00 2.45
917 927 3.483665 CGTTTCGCGCGGGAATGA 61.484 61.111 34.59 20.96 0.00 2.57
985 995 0.611200 TCGCGGGATCTTTTTCCTCA 59.389 50.000 6.13 0.00 35.97 3.86
1305 1355 3.814005 TCTGAATAAAGGTACGGCTCC 57.186 47.619 0.00 0.00 0.00 4.70
1312 1362 6.821665 CCAAACCGAAGATCTGAATAAAGGTA 59.178 38.462 0.00 0.00 0.00 3.08
1332 1383 0.322816 TCAGAGCTGATGGCCCAAAC 60.323 55.000 0.00 0.00 43.05 2.93
1348 1404 4.202245 TCGACTGGTTTAGGGATTTCAG 57.798 45.455 0.00 0.00 0.00 3.02
1360 1416 8.692710 TCAACTTAGATATTACATCGACTGGTT 58.307 33.333 0.00 0.00 0.00 3.67
1407 1471 8.584157 GGATCATGTACTCATCTGACTTCTAAT 58.416 37.037 0.00 0.00 31.15 1.73
1408 1472 7.255277 CGGATCATGTACTCATCTGACTTCTAA 60.255 40.741 0.00 0.00 31.15 2.10
1409 1473 6.205658 CGGATCATGTACTCATCTGACTTCTA 59.794 42.308 0.00 0.00 31.15 2.10
1411 1475 5.218885 CGGATCATGTACTCATCTGACTTC 58.781 45.833 0.00 0.00 31.15 3.01
1412 1476 4.646945 ACGGATCATGTACTCATCTGACTT 59.353 41.667 12.40 0.00 31.15 3.01
1439 1511 3.334691 CTTTTCCATGGTGAAGCTCGTA 58.665 45.455 12.58 0.00 0.00 3.43
1441 1513 1.135575 GCTTTTCCATGGTGAAGCTCG 60.136 52.381 30.41 12.08 40.87 5.03
1446 1518 4.215399 CGAACTAAGCTTTTCCATGGTGAA 59.785 41.667 12.58 5.41 0.00 3.18
1460 1532 3.184581 CAGGAACAGTCAACGAACTAAGC 59.815 47.826 0.00 0.00 0.00 3.09
1496 1568 9.209175 CAGATTTCACTGTTTACTTAACTAGCT 57.791 33.333 0.00 0.00 37.64 3.32
1500 1572 6.770785 TGGCAGATTTCACTGTTTACTTAACT 59.229 34.615 0.00 0.00 39.73 2.24
1506 1584 4.787598 CTGTGGCAGATTTCACTGTTTAC 58.212 43.478 0.00 0.00 39.73 2.01
1550 1631 1.630244 GCAGCTGAACTAGTGGTGCG 61.630 60.000 20.43 9.53 43.49 5.34
1576 1657 7.341512 AGCAATAGCATAGCAGATAGTGATCTA 59.658 37.037 0.00 0.00 41.21 1.98
1583 1664 6.393171 TGTACAGCAATAGCATAGCAGATAG 58.607 40.000 0.00 0.00 45.49 2.08
1601 1682 4.888239 ACACCTAGTATGCCTACTGTACAG 59.112 45.833 21.44 21.44 38.65 2.74
1653 1740 1.808945 CTGTCACCCTGCATCAAGAAC 59.191 52.381 0.00 0.00 0.00 3.01
1654 1741 1.421268 ACTGTCACCCTGCATCAAGAA 59.579 47.619 0.00 0.00 0.00 2.52
1982 2075 2.047274 CCACGTGTACAGCCCCTG 60.047 66.667 15.65 0.00 37.52 4.45
2207 2317 2.669434 TCTTATGCGTAAAACCGTCAGC 59.331 45.455 0.00 0.00 0.00 4.26
2221 2331 4.518211 AGGCAATGAGCTACAATCTTATGC 59.482 41.667 0.00 0.00 44.79 3.14
2292 2402 2.496871 CAGACCAGTCTCTCATCAAGCT 59.503 50.000 0.00 0.00 37.98 3.74
2335 2445 1.448540 CATCTTTCCTGCGGCGAGT 60.449 57.895 12.98 0.00 0.00 4.18
2340 2450 1.012841 GAGCTTCATCTTTCCTGCGG 58.987 55.000 0.00 0.00 0.00 5.69
2344 2454 4.723309 AGTTGTTGAGCTTCATCTTTCCT 58.277 39.130 0.00 0.00 0.00 3.36
2364 2474 6.039382 GCTTCGTTCCCATTTATCCATAAAGT 59.961 38.462 0.00 0.00 35.88 2.66
2368 2478 5.042463 TGCTTCGTTCCCATTTATCCATA 57.958 39.130 0.00 0.00 0.00 2.74
2503 2613 1.584380 CTGCAAACCTCTCAGCTGGC 61.584 60.000 15.13 7.14 0.00 4.85
2521 2631 2.815308 CGCTCCCGGAATAGTGCT 59.185 61.111 0.73 0.00 0.00 4.40
2585 2695 8.177119 TCTACCAAAAAGAATTGCAGTACATT 57.823 30.769 0.00 0.00 0.00 2.71
2586 2696 7.759489 TCTACCAAAAAGAATTGCAGTACAT 57.241 32.000 0.00 0.00 0.00 2.29
2587 2697 7.575414 TTCTACCAAAAAGAATTGCAGTACA 57.425 32.000 0.00 0.00 0.00 2.90
2588 2698 9.476202 AATTTCTACCAAAAAGAATTGCAGTAC 57.524 29.630 0.00 0.00 33.17 2.73
2589 2699 9.691362 GAATTTCTACCAAAAAGAATTGCAGTA 57.309 29.630 0.00 0.00 33.17 2.74
2590 2700 8.424133 AGAATTTCTACCAAAAAGAATTGCAGT 58.576 29.630 0.00 0.00 33.17 4.40
2591 2701 8.706035 CAGAATTTCTACCAAAAAGAATTGCAG 58.294 33.333 0.00 0.00 33.17 4.41
2593 2703 8.593492 ACAGAATTTCTACCAAAAAGAATTGC 57.407 30.769 0.00 0.00 33.17 3.56
2628 2738 3.202818 TGTTAGGAAGATGCCCACATGAT 59.797 43.478 0.00 0.00 36.35 2.45
2632 2742 2.375174 AGTTGTTAGGAAGATGCCCACA 59.625 45.455 0.00 0.00 0.00 4.17
2633 2743 3.073274 AGTTGTTAGGAAGATGCCCAC 57.927 47.619 0.00 0.00 0.00 4.61
2635 2745 4.336280 AGAAAGTTGTTAGGAAGATGCCC 58.664 43.478 0.00 0.00 0.00 5.36
2636 2746 5.106118 GGAAGAAAGTTGTTAGGAAGATGCC 60.106 44.000 0.00 0.00 0.00 4.40
2637 2747 5.707764 AGGAAGAAAGTTGTTAGGAAGATGC 59.292 40.000 0.00 0.00 0.00 3.91
2638 2748 6.712547 ACAGGAAGAAAGTTGTTAGGAAGATG 59.287 38.462 0.00 0.00 0.00 2.90
2639 2749 6.842676 ACAGGAAGAAAGTTGTTAGGAAGAT 58.157 36.000 0.00 0.00 0.00 2.40
2642 2752 6.940298 CCATACAGGAAGAAAGTTGTTAGGAA 59.060 38.462 0.00 0.00 41.22 3.36
2643 2753 6.043938 ACCATACAGGAAGAAAGTTGTTAGGA 59.956 38.462 0.00 0.00 41.22 2.94
2644 2754 6.238648 ACCATACAGGAAGAAAGTTGTTAGG 58.761 40.000 0.00 0.00 41.22 2.69
2646 2756 7.284074 TGAACCATACAGGAAGAAAGTTGTTA 58.716 34.615 0.00 0.00 41.22 2.41
2660 2770 2.359900 GCAAGTCCCTGAACCATACAG 58.640 52.381 0.00 0.00 35.43 2.74
2677 2790 2.048597 CGCTCCAGGTACACGCAA 60.049 61.111 0.00 0.00 0.00 4.85
2682 2795 0.888619 CTGAAGACGCTCCAGGTACA 59.111 55.000 0.00 0.00 0.00 2.90
2691 2804 0.603975 GCAACCCTTCTGAAGACGCT 60.604 55.000 18.68 0.00 0.00 5.07
2718 2831 1.463444 GGTTGCGTTCTTCTTGCGTAT 59.537 47.619 0.00 0.00 0.00 3.06
2749 2862 1.760613 AGCGGTGAAAATAGGATCGGA 59.239 47.619 0.00 0.00 0.00 4.55
2766 2879 1.541233 GGGTGGGTTGATCATCTAGCG 60.541 57.143 0.00 0.00 0.00 4.26
2782 2899 2.159043 AGAACATCGATGTAGCAGGGTG 60.159 50.000 30.16 2.41 40.80 4.61
2796 2916 0.251341 AGGCCCACAACCAGAACATC 60.251 55.000 0.00 0.00 0.00 3.06
2812 2932 1.526575 TTTACCAGCAGCAGCAAGGC 61.527 55.000 11.63 0.00 45.49 4.35
2834 2954 0.394216 TCAAGTGCAGCAACACCAGT 60.394 50.000 0.00 0.00 41.67 4.00
2891 3011 1.227205 CGCCTTTGTTTGCTTGCCA 60.227 52.632 0.00 0.00 0.00 4.92
2981 3137 3.460857 AGGTTCAGATATTGCGTCTCC 57.539 47.619 0.00 0.00 0.00 3.71
3044 3200 8.246180 AGCCTTACATTACATGTTGAAATTCAG 58.754 33.333 2.30 0.00 41.63 3.02
3047 3203 8.367156 ACAAGCCTTACATTACATGTTGAAATT 58.633 29.630 2.30 0.00 41.63 1.82
3124 6846 5.179742 GCATTCCTCTGCTATTCATTCTGAG 59.820 44.000 0.00 0.00 39.12 3.35
3155 6883 4.766373 TGCAATTTCAGTTCTAGGAATGCA 59.234 37.500 0.00 0.00 36.94 3.96
3158 6886 6.071221 TGCAATGCAATTTCAGTTCTAGGAAT 60.071 34.615 5.01 0.00 34.76 3.01
3163 6891 4.523943 ACCTGCAATGCAATTTCAGTTCTA 59.476 37.500 9.92 0.00 44.48 2.10
3360 7092 2.507058 ACTGCTATTCATTCTGGAGCCA 59.493 45.455 0.00 0.00 31.98 4.75
3403 7135 3.364366 GGCGACACAAATTCACTTCTCAG 60.364 47.826 0.00 0.00 0.00 3.35
3410 7142 0.951558 ACCTGGCGACACAAATTCAC 59.048 50.000 0.00 0.00 35.60 3.18
3434 7166 1.741401 TCGGAACAGGATGCTTGCG 60.741 57.895 0.00 0.00 42.53 4.85
3537 7272 6.395426 AACAACAAAAGATTCTGATGCTCA 57.605 33.333 0.00 0.00 0.00 4.26
3699 7440 0.737219 GCTGGCTATTCTGCACTTGG 59.263 55.000 0.00 0.00 34.04 3.61
3719 7465 0.250684 TGTGCGGGAAGAATGCAGAA 60.251 50.000 0.00 0.00 39.67 3.02
3744 7490 1.001597 CGCGAGGGGACTTATCTGTAC 60.002 57.143 0.00 0.00 44.43 2.90
3774 7520 1.815003 CGGATGCGATCTGTTGGCA 60.815 57.895 0.00 0.00 41.48 4.92
3788 7534 4.576374 GGTAGGGGAGGGGCGGAT 62.576 72.222 0.00 0.00 0.00 4.18
3807 7557 3.839432 GGGAGGCGACGAAGGAGG 61.839 72.222 0.00 0.00 0.00 4.30
3808 7558 4.194720 CGGGAGGCGACGAAGGAG 62.195 72.222 0.00 0.00 0.00 3.69
3809 7559 4.728110 TCGGGAGGCGACGAAGGA 62.728 66.667 0.00 0.00 36.01 3.36
3810 7560 4.194720 CTCGGGAGGCGACGAAGG 62.195 72.222 0.00 0.00 38.79 3.46
3811 7561 4.856607 GCTCGGGAGGCGACGAAG 62.857 72.222 0.00 0.00 38.79 3.79
3959 7709 2.495409 CGCGCCACCCATAGACCTA 61.495 63.158 0.00 0.00 0.00 3.08
4003 7753 0.811915 CCGCCACTATCTAGATCGGG 59.188 60.000 17.79 14.46 33.27 5.14
4011 7761 2.524394 ATCCGGCCGCCACTATCT 60.524 61.111 22.85 0.00 0.00 1.98
4052 7802 4.114997 CATTGTTGGGACGCCGGC 62.115 66.667 19.07 19.07 0.00 6.13
4055 7805 3.758931 GGCCATTGTTGGGACGCC 61.759 66.667 0.00 0.00 43.84 5.68
4089 7839 1.364171 CAGATCGGGAAGGGCTACG 59.636 63.158 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.