AutoCloner

Multiple sequence alignment - TraesCS5D01G529800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G529800	chr5D	100.000	3585	0	0	1	3585	546301927	546305511	0.000000e+00	6621.0
1	TraesCS5D01G529800	chr5D	90.127	314	9	8	3276	3585	547536021	547535726	4.340000e-104	388.0
2	TraesCS5D01G529800	chr5D	87.912	182	14	8	3409	3585	384481627	384481805	1.300000e-49	207.0
3	TraesCS5D01G529800	chr6A	90.440	2479	141	39	287	2700	616831010	616833457	0.000000e+00	3177.0
4	TraesCS5D01G529800	chr6A	92.857	182	7	2	114	289	616830799	616830980	3.550000e-65	259.0
5	TraesCS5D01G529800	chr6A	94.872	39	2	0	403	441	471804686	471804648	1.070000e-05	62.1
6	TraesCS5D01G529800	chr6B	93.571	1571	86	9	1125	2687	718345469	718343906	0.000000e+00	2327.0
7	TraesCS5D01G529800	chr6B	87.086	875	66	31	287	1140	718346335	718345487	0.000000e+00	946.0
8	TraesCS5D01G529800	chr6B	92.381	210	10	2	85	288	718346575	718346366	9.730000e-76	294.0
9	TraesCS5D01G529800	chr6B	84.146	82	5	1	365	438	157469456	157469537	4.960000e-09	73.1
10	TraesCS5D01G529800	chr6D	94.875	1444	52	8	1264	2700	472978561	472977133	0.000000e+00	2237.0
11	TraesCS5D01G529800	chr6D	89.699	864	62	21	2732	3585	429637	428791	0.000000e+00	1077.0
12	TraesCS5D01G529800	chr6D	93.985	665	28	3	287	939	472979479	472978815	0.000000e+00	996.0
13	TraesCS5D01G529800	chr6D	90.441	408	26	5	287	682	472973678	472973272	3.170000e-145	525.0
14	TraesCS5D01G529800	chr6D	94.340	265	10	3	965	1228	472978817	472978557	5.580000e-108	401.0
15	TraesCS5D01G529800	chr6D	97.073	205	6	0	85	289	472979713	472979509	2.650000e-91	346.0
16	TraesCS5D01G529800	chr7B	88.329	754	57	19	2845	3585	113515809	113515074	0.000000e+00	876.0
17	TraesCS5D01G529800	chr7B	87.640	178	14	7	3406	3581	34165091	34165262	2.180000e-47	200.0
18	TraesCS5D01G529800	chr3D	87.484	767	62	26	2702	3457	589698911	589698168	0.000000e+00	854.0
19	TraesCS5D01G529800	chr3D	84.481	799	79	27	2690	3461	581825771	581826551	0.000000e+00	747.0
20	TraesCS5D01G529800	chr1A	86.693	774	70	30	2701	3461	35135228	35134475	0.000000e+00	828.0
21	TraesCS5D01G529800	chr1A	85.419	775	83	25	2699	3461	559048220	559047464	0.000000e+00	778.0
22	TraesCS5D01G529800	chr2D	87.415	739	61	23	2704	3429	19542069	19542788	0.000000e+00	821.0
23	TraesCS5D01G529800	chr2D	100.000	37	0	0	402	438	123514966	123515002	6.420000e-08	69.4
24	TraesCS5D01G529800	chr7A	85.438	776	81	23	2699	3461	576071430	576070674	0.000000e+00	778.0
25	TraesCS5D01G529800	chr4D	85.082	791	86	21	2702	3471	437822492	437821713	0.000000e+00	778.0
26	TraesCS5D01G529800	chr4D	84.360	211	22	8	3380	3585	437821735	437821531	2.820000e-46	196.0
27	TraesCS5D01G529800	chr4D	92.857	42	2	1	336	377	486947249	486947289	3.870000e-05	60.2
28	TraesCS5D01G529800	chr5B	85.582	756	76	23	2701	3440	686434666	686435404	0.000000e+00	761.0
29	TraesCS5D01G529800	chr5B	94.048	84	3	2	3	86	421160871	421160790	3.760000e-25	126.0
30	TraesCS5D01G529800	chr5B	93.750	64	4	0	441	504	578813816	578813879	2.950000e-16	97.1
31	TraesCS5D01G529800	chr5B	81.905	105	9	7	342	438	427334285	427334387	2.970000e-11	80.5
32	TraesCS5D01G529800	chr5B	87.500	64	6	2	441	503	232555931	232555869	4.960000e-09	73.1
33	TraesCS5D01G529800	chr2B	89.595	173	12	6	3416	3585	212571464	212571295	7.800000e-52	215.0
34	TraesCS5D01G529800	chr2B	95.238	84	2	1	1	84	32135933	32136014	8.080000e-27	132.0
35	TraesCS5D01G529800	chr2B	94.186	86	3	2	1	86	13502981	13502898	2.900000e-26	130.0
36	TraesCS5D01G529800	chr1B	89.017	173	13	6	3416	3585	489538187	489538356	3.630000e-50	209.0
37	TraesCS5D01G529800	chr1B	94.186	86	3	1	1	86	37520783	37520866	2.900000e-26	130.0
38	TraesCS5D01G529800	chr1B	93.023	86	4	2	1	86	511965709	511965792	1.350000e-24	124.0
39	TraesCS5D01G529800	chr3B	84.906	212	24	6	3380	3585	25488253	25488044	1.300000e-49	207.0
40	TraesCS5D01G529800	chr3B	94.048	84	3	2	3	86	743730646	743730727	3.760000e-25	126.0
41	TraesCS5D01G529800	chr3B	97.297	37	1	0	402	438	403103758	403103722	2.990000e-06	63.9
42	TraesCS5D01G529800	chr7D	95.181	83	3	1	4	86	27615900	27615819	2.900000e-26	130.0
43	TraesCS5D01G529800	chr3A	95.122	82	3	1	4	85	21114667	21114747	1.040000e-25	128.0
44	TraesCS5D01G529800	chr4B	93.023	86	4	2	1	86	419226015	419225932	1.350000e-24	124.0
45	TraesCS5D01G529800	chr1D	87.879	66	8	0	337	402	413727942	413727877	1.070000e-10	78.7
46	TraesCS5D01G529800	chr1D	84.524	84	5	3	363	438	8390903	8390986	3.840000e-10	76.8
47	TraesCS5D01G529800	chrUn	82.353	85	6	3	363	439	100288434	100288351	8.310000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G529800	chr5D	546301927	546305511	3584	False	6621	6621	100.000000	1	3585	1	chr5D.!!$F2	3584
1	TraesCS5D01G529800	chr6A	616830799	616833457	2658	False	1718	3177	91.648500	114	2700	2	chr6A.!!$F1	2586
2	TraesCS5D01G529800	chr6B	718343906	718346575	2669	True	1189	2327	91.012667	85	2687	3	chr6B.!!$R1	2602
3	TraesCS5D01G529800	chr6D	428791	429637	846	True	1077	1077	89.699000	2732	3585	1	chr6D.!!$R1	853
4	TraesCS5D01G529800	chr6D	472973272	472979713	6441	True	901	2237	94.142800	85	2700	5	chr6D.!!$R2	2615
5	TraesCS5D01G529800	chr7B	113515074	113515809	735	True	876	876	88.329000	2845	3585	1	chr7B.!!$R1	740
6	TraesCS5D01G529800	chr3D	589698168	589698911	743	True	854	854	87.484000	2702	3457	1	chr3D.!!$R1	755
7	TraesCS5D01G529800	chr3D	581825771	581826551	780	False	747	747	84.481000	2690	3461	1	chr3D.!!$F1	771
8	TraesCS5D01G529800	chr1A	35134475	35135228	753	True	828	828	86.693000	2701	3461	1	chr1A.!!$R1	760
9	TraesCS5D01G529800	chr1A	559047464	559048220	756	True	778	778	85.419000	2699	3461	1	chr1A.!!$R2	762
10	TraesCS5D01G529800	chr2D	19542069	19542788	719	False	821	821	87.415000	2704	3429	1	chr2D.!!$F1	725
11	TraesCS5D01G529800	chr7A	576070674	576071430	756	True	778	778	85.438000	2699	3461	1	chr7A.!!$R1	762
12	TraesCS5D01G529800	chr4D	437821531	437822492	961	True	487	778	84.721000	2702	3585	2	chr4D.!!$R1	883
13	TraesCS5D01G529800	chr5B	686434666	686435404	738	False	761	761	85.582000	2701	3440	1	chr5B.!!$F3	739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
905	1020	1.203187	TGGAGTTGAGGGAGTGCTACT	60.203	52.381	0.0	0.0	0.00	2.57	F
2080	2244	0.110147	GTGTCAGACCTCGTCTCGTG	60.110	60.000	0.0	0.0	41.37	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2206	2370	0.248907	CACACGAGTTCACCGTCTGT	60.249	55.000	0.0	0.0	38.29	3.41	R
2939	3246	1.061857	CGCAGCCAAAACCAACAAAAC	59.938	47.619	0.0	0.0	0.00	2.43	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	80	4.323477	CGGGGCAACGACAGGGAA	62.323	66.667	0.00	0.00	35.47	3.97
80	81	2.359975	GGGGCAACGACAGGGAAG	60.360	66.667	0.00	0.00	37.60	3.46
81	82	2.747686	GGGCAACGACAGGGAAGA	59.252	61.111	0.00	0.00	37.60	2.87
82	83	1.671379	GGGCAACGACAGGGAAGAC	60.671	63.158	0.00	0.00	37.60	3.01
83	84	1.671379	GGCAACGACAGGGAAGACC	60.671	63.158	0.00	0.00	40.67	3.85
144	148	1.215647	GACGAGATGCCCGACAAGT	59.784	57.895	0.00	0.00	0.00	3.16
293	338	7.308710	GCGCTACTCCCTCTAATCCATATATAC	60.309	44.444	0.00	0.00	0.00	1.47
298	343	8.062536	ACTCCCTCTAATCCATATATACAGTCC	58.937	40.741	0.00	0.00	0.00	3.85
506	573	6.849151	AGTAAATTTACTGAGTTGGACCCTT	58.151	36.000	26.30	1.25	42.13	3.95
510	577	5.633655	TTTACTGAGTTGGACCCTTTGTA	57.366	39.130	0.00	0.00	0.00	2.41
512	579	4.086706	ACTGAGTTGGACCCTTTGTAAG	57.913	45.455	0.00	0.00	0.00	2.34
514	581	3.815401	CTGAGTTGGACCCTTTGTAAGTG	59.185	47.826	0.00	0.00	0.00	3.16
675	758	3.603532	TCAATACTGCTTTGCTCCTCAG	58.396	45.455	0.00	0.00	0.00	3.35
905	1020	1.203187	TGGAGTTGAGGGAGTGCTACT	60.203	52.381	0.00	0.00	0.00	2.57
951	1066	9.236691	CAGTATGATTTATGTTTTGTGGTATGC	57.763	33.333	0.00	0.00	39.69	3.14
1007	1122	5.075493	GGGAAAGCTGGTATTGATGATCAT	58.925	41.667	8.25	8.25	0.00	2.45
1008	1123	5.537674	GGGAAAGCTGGTATTGATGATCATT	59.462	40.000	10.14	0.00	0.00	2.57
1009	1124	6.444633	GGAAAGCTGGTATTGATGATCATTG	58.555	40.000	10.14	0.00	0.00	2.82
1010	1125	6.263842	GGAAAGCTGGTATTGATGATCATTGA	59.736	38.462	10.14	1.97	0.00	2.57
1013	1128	7.450124	AGCTGGTATTGATGATCATTGATTC	57.550	36.000	10.14	5.22	0.00	2.52
1025	1140	9.343103	GATGATCATTGATTCATTGTTATCTGC	57.657	33.333	10.14	0.00	0.00	4.26
1540	1704	2.885861	GTGGTCTCAGCGTCCGAT	59.114	61.111	0.00	0.00	0.00	4.18
1568	1732	1.447838	CCAGACAATGGGACGGTCG	60.448	63.158	1.43	0.00	46.36	4.79
1569	1733	1.292223	CAGACAATGGGACGGTCGT	59.708	57.895	1.43	0.00	36.68	4.34
1623	1787	2.821366	GATGCAGCTGGTCCGTGG	60.821	66.667	17.12	0.00	0.00	4.94
1688	1852	2.194889	TGCACGGTGACCTACGACA	61.195	57.895	13.29	0.00	0.00	4.35
1699	1863	1.515954	CTACGACATCCCAGCGGTT	59.484	57.895	0.00	0.00	0.00	4.44
1774	1938	3.515104	TCATCATGCCTCTCTACAACACA	59.485	43.478	0.00	0.00	0.00	3.72
1835	1999	1.206132	ACTACGACCGCAAATGGATCA	59.794	47.619	0.00	0.00	0.00	2.92
1990	2154	2.925706	TCCGGCAAGGGCTACACA	60.926	61.111	0.00	0.00	41.52	3.72
2080	2244	0.110147	GTGTCAGACCTCGTCTCGTG	60.110	60.000	0.00	0.00	41.37	4.35
2139	2303	2.037136	CGGAAGTTCTGGCAGCTGG	61.037	63.158	17.12	0.00	0.00	4.85
2206	2370	2.281484	GACCTGGCCAAGTTCGCA	60.281	61.111	8.78	0.00	0.00	5.10
2224	2388	2.112898	ACAGACGGTGAACTCGTGT	58.887	52.632	0.00	0.00	41.22	4.49
2280	2444	2.063015	AACATGGTGTTCCTCCCGCA	62.063	55.000	0.00	0.00	35.27	5.69
2374	2538	4.883354	GCTCCCATGGGGCTTCGG	62.883	72.222	30.93	14.18	43.94	4.30
2557	2721	1.002868	CAGAGGGGTCCTGCAACAG	60.003	63.158	0.00	0.00	31.76	3.16
2566	2730	0.824109	TCCTGCAACAGATCTACCGG	59.176	55.000	0.00	0.00	32.44	5.28
2600	2764	7.696872	CCATCACATAAGTAGATTATACGTCCG	59.303	40.741	0.00	0.00	32.61	4.79
2602	2766	6.149973	TCACATAAGTAGATTATACGTCCGGG	59.850	42.308	0.00	0.00	32.61	5.73
2604	2768	3.515602	AGTAGATTATACGTCCGGGGT	57.484	47.619	0.00	2.44	0.00	4.95
2609	2773	4.193865	AGATTATACGTCCGGGGTTTTTG	58.806	43.478	0.00	0.00	0.00	2.44
2610	2774	3.692257	TTATACGTCCGGGGTTTTTGA	57.308	42.857	0.00	0.00	0.00	2.69
2618	2782	4.023021	CGTCCGGGGTTTTTGAATTTTCTA	60.023	41.667	0.00	0.00	0.00	2.10
2622	2796	6.495526	TCCGGGGTTTTTGAATTTTCTATTCT	59.504	34.615	0.00	0.00	0.00	2.40
2623	2797	6.589907	CCGGGGTTTTTGAATTTTCTATTCTG	59.410	38.462	0.00	0.00	0.00	3.02
2644	2827	7.445900	TCTGAAATGTAATAACACGTCGATC	57.554	36.000	0.00	0.00	38.78	3.69
2661	2844	2.119495	GATCCCATACCTCACACTGGT	58.881	52.381	0.00	0.00	41.28	4.00
2787	3072	2.223548	TGTGCTTTGAGATGTGTGTTGC	60.224	45.455	0.00	0.00	0.00	4.17
3065	5112	0.041312	CTTCGGTCAAAGTTGTGCCG	60.041	55.000	17.29	17.29	43.41	5.69
3214	5288	6.112927	ACCAATGCCACTATTCATTTGTTT	57.887	33.333	0.00	0.00	31.15	2.83
3397	6815	9.793252	CATATTCATTCTTTCTTTTGTGGGTAG	57.207	33.333	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	4.323477	TTCCCTGTCGTTGCCCCG	62.323	66.667	0.00	0.00	0.00	5.73
63	64	2.359975	CTTCCCTGTCGTTGCCCC	60.360	66.667	0.00	0.00	0.00	5.80
64	65	1.671379	GTCTTCCCTGTCGTTGCCC	60.671	63.158	0.00	0.00	0.00	5.36
65	66	1.671379	GGTCTTCCCTGTCGTTGCC	60.671	63.158	0.00	0.00	0.00	4.52
66	67	0.670854	GAGGTCTTCCCTGTCGTTGC	60.671	60.000	0.00	0.00	46.51	4.17
67	68	0.679505	TGAGGTCTTCCCTGTCGTTG	59.320	55.000	0.00	0.00	46.51	4.10
68	69	0.969894	CTGAGGTCTTCCCTGTCGTT	59.030	55.000	0.00	0.00	46.51	3.85
69	70	0.112606	TCTGAGGTCTTCCCTGTCGT	59.887	55.000	0.00	0.00	46.51	4.34
70	71	1.407258	GATCTGAGGTCTTCCCTGTCG	59.593	57.143	0.00	0.00	46.51	4.35
71	72	1.760029	GGATCTGAGGTCTTCCCTGTC	59.240	57.143	0.00	0.00	46.51	3.51
72	73	1.872773	GGATCTGAGGTCTTCCCTGT	58.127	55.000	0.00	0.00	46.51	4.00
73	74	0.749649	CGGATCTGAGGTCTTCCCTG	59.250	60.000	0.00	0.00	46.51	4.45
75	76	0.688087	ACCGGATCTGAGGTCTTCCC	60.688	60.000	9.46	0.00	35.50	3.97
76	77	2.903404	ACCGGATCTGAGGTCTTCC	58.097	57.895	9.46	0.00	35.50	3.46
81	82	2.113433	CGACGACCGGATCTGAGGT	61.113	63.158	9.46	5.42	44.64	3.85
82	83	1.374343	TTCGACGACCGGATCTGAGG	61.374	60.000	9.46	1.90	39.14	3.86
83	84	0.028242	CTTCGACGACCGGATCTGAG	59.972	60.000	9.46	0.00	39.14	3.35
144	148	1.270094	ACCTCTGTTTGCATCGACGAA	60.270	47.619	0.00	0.00	0.00	3.85
224	237	6.718912	TGGAATCATTTGGACAGAAACACATA	59.281	34.615	0.00	0.00	0.00	2.29
260	273	2.506444	AGAGGGAGTAGCGCATAGTAC	58.494	52.381	11.47	2.81	0.00	2.73
268	281	7.720074	TGTATATATGGATTAGAGGGAGTAGCG	59.280	40.741	0.00	0.00	0.00	4.26
506	573	1.276705	TGCCCATAGTCGCACTTACAA	59.723	47.619	0.00	0.00	0.00	2.41
510	577	0.108138	GACTGCCCATAGTCGCACTT	60.108	55.000	0.00	0.00	37.88	3.16
512	579	4.110493	GACTGCCCATAGTCGCAC	57.890	61.111	0.00	0.00	37.88	5.34
675	758	0.391661	TGGAGCTTGACCGAGATTGC	60.392	55.000	0.00	0.00	0.00	3.56
905	1020	6.691255	ACTGTAAGGGTTTACCACTGAATA	57.309	37.500	0.69	0.00	43.89	1.75
1007	1122	5.677852	GCTGCAGCAGATAACAATGAATCAA	60.678	40.000	33.36	0.00	41.59	2.57
1008	1123	4.201980	GCTGCAGCAGATAACAATGAATCA	60.202	41.667	33.36	0.00	41.59	2.57
1009	1124	4.036498	AGCTGCAGCAGATAACAATGAATC	59.964	41.667	38.24	4.68	45.16	2.52
1010	1125	3.952323	AGCTGCAGCAGATAACAATGAAT	59.048	39.130	38.24	11.50	45.16	2.57
1013	1128	2.943690	AGAGCTGCAGCAGATAACAATG	59.056	45.455	38.24	0.00	45.16	2.82
1024	1139	1.403780	CCCATTTTTGAGAGCTGCAGC	60.404	52.381	31.53	31.53	42.49	5.25
1025	1140	2.165167	TCCCATTTTTGAGAGCTGCAG	58.835	47.619	10.11	10.11	0.00	4.41
1414	1578	2.509336	CTCCTTGGTGCGGCTACG	60.509	66.667	0.00	0.00	44.63	3.51
1540	1704	0.888736	CATTGTCTGGCCGGTTGTCA	60.889	55.000	12.43	4.55	0.00	3.58
1568	1732	4.580551	CGGGTACGGGCGGATCAC	62.581	72.222	0.00	0.00	36.18	3.06
1688	1852	0.250513	GAGAAGACAACCGCTGGGAT	59.749	55.000	0.00	0.00	36.97	3.85
1774	1938	3.900892	CCATCGTACTCCCGCGCT	61.901	66.667	5.56	0.00	0.00	5.92
1835	1999	2.341176	GGCGTGACGGTACTTGGT	59.659	61.111	7.25	0.00	0.00	3.67
1846	2010	2.685017	AGCATGGAGAGGGCGTGA	60.685	61.111	0.00	0.00	0.00	4.35
1990	2154	4.447342	CCCCGGAAGCCCAGCATT	62.447	66.667	0.73	0.00	0.00	3.56
2060	2224	1.235948	ACGAGACGAGGTCTGACACC	61.236	60.000	10.38	0.00	43.53	4.16
2080	2244	0.674895	AGTTCCTTCGCAGCACCATC	60.675	55.000	0.00	0.00	0.00	3.51
2139	2303	3.423154	CGAAGCCAACCTCGGTGC	61.423	66.667	0.00	0.00	0.00	5.01
2206	2370	0.248907	CACACGAGTTCACCGTCTGT	60.249	55.000	0.00	0.00	38.29	3.41
2224	2388	4.164087	ACGCCCACCAACACGTCA	62.164	61.111	0.00	0.00	32.37	4.35
2280	2444	2.893404	GCACCACCGTGTCGTTGT	60.893	61.111	0.00	0.00	42.39	3.32
2286	2450	2.048222	CGATCTGCACCACCGTGT	60.048	61.111	0.00	0.00	42.39	4.49
2374	2538	1.303799	TGGTCTCCTGCTCGACGTAC	61.304	60.000	0.00	0.00	0.00	3.67
2384	2548	4.135153	CTCGGCGGTGGTCTCCTG	62.135	72.222	7.21	0.00	0.00	3.86
2506	2670	2.847234	AGGGTGACGTTCTGCCCA	60.847	61.111	16.32	0.00	43.42	5.36
2566	2730	6.140303	TCTACTTATGTGATGGTAACGGAC	57.860	41.667	0.00	0.00	42.51	4.79
2594	2758	1.694844	AATTCAAAAACCCCGGACGT	58.305	45.000	0.73	0.00	0.00	4.34
2595	2759	2.804697	AAATTCAAAAACCCCGGACG	57.195	45.000	0.73	0.00	0.00	4.79
2596	2760	4.330944	AGAAAATTCAAAAACCCCGGAC	57.669	40.909	0.73	0.00	0.00	4.79
2597	2761	6.495526	AGAATAGAAAATTCAAAAACCCCGGA	59.504	34.615	0.73	0.00	0.00	5.14
2598	2762	6.589907	CAGAATAGAAAATTCAAAAACCCCGG	59.410	38.462	0.00	0.00	0.00	5.73
2600	2764	9.554395	TTTCAGAATAGAAAATTCAAAAACCCC	57.446	29.630	1.01	0.00	34.77	4.95
2618	2782	7.821595	TCGACGTGTTATTACATTTCAGAAT	57.178	32.000	0.00	0.00	36.50	2.40
2622	2796	5.521010	GGGATCGACGTGTTATTACATTTCA	59.479	40.000	0.00	0.00	36.50	2.69
2623	2797	5.521010	TGGGATCGACGTGTTATTACATTTC	59.479	40.000	0.00	0.00	36.50	2.17
2644	2827	1.628340	TGAACCAGTGTGAGGTATGGG	59.372	52.381	0.00	0.00	38.76	4.00
2734	2921	5.762045	ACAGAAAATCGATTGACCACAAAG	58.238	37.500	12.25	0.00	39.54	2.77
2787	3072	9.252962	ACAGAATTAAACAGCAGAAAATGAAAG	57.747	29.630	0.00	0.00	0.00	2.62
2939	3246	1.061857	CGCAGCCAAAACCAACAAAAC	59.938	47.619	0.00	0.00	0.00	2.43
3189	5262	6.455360	ACAAATGAATAGTGGCATTGGTAG	57.545	37.500	0.00	0.00	37.00	3.18
3214	5288	8.020244	GGAACTTTTGCAAAAACAAAATCTCAA	58.980	29.630	23.92	0.00	45.66	3.02
3370	6788	8.421249	ACCCACAAAAGAAAGAATGAATATGA	57.579	30.769	0.00	0.00	0.00	2.15

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.