Multiple sequence alignment - TraesCS5D01G529600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G529600 chr5D 100.000 5455 0 0 1 5455 546079701 546085155 0.000000e+00 10074.0
1 TraesCS5D01G529600 chr4A 92.087 4663 231 51 705 5332 623321901 623317342 0.000000e+00 6440.0
2 TraesCS5D01G529600 chr4A 84.222 469 56 14 4120 4587 655565818 655565367 1.800000e-119 440.0
3 TraesCS5D01G529600 chr4A 88.158 76 7 2 52 126 623323294 623323220 7.530000e-14 89.8
4 TraesCS5D01G529600 chr5B 90.860 4858 266 76 688 5455 689369869 689374638 0.000000e+00 6348.0
5 TraesCS5D01G529600 chr5B 84.144 473 55 16 4120 4589 527840764 527840309 1.800000e-119 440.0
6 TraesCS5D01G529600 chr2B 84.171 796 77 25 932 1708 67122061 67122826 0.000000e+00 726.0
7 TraesCS5D01G529600 chr2B 84.501 471 55 14 4120 4589 35129583 35130036 3.000000e-122 449.0
8 TraesCS5D01G529600 chr2B 92.982 57 1 1 353 409 326681374 326681427 4.530000e-11 80.5
9 TraesCS5D01G529600 chr2B 89.130 46 1 3 338 383 17882923 17882964 3.000000e-03 54.7
10 TraesCS5D01G529600 chrUn 83.171 820 85 24 921 1715 49201439 49200648 0.000000e+00 701.0
11 TraesCS5D01G529600 chrUn 91.667 60 3 2 352 410 137678222 137678164 1.260000e-11 82.4
12 TraesCS5D01G529600 chr4B 83.956 455 56 13 4120 4574 90860697 90861134 2.350000e-113 420.0
13 TraesCS5D01G529600 chr4B 90.000 60 6 0 351 410 17498332 17498273 1.630000e-10 78.7
14 TraesCS5D01G529600 chr2A 81.216 559 62 21 2272 2821 64333192 64333716 1.410000e-110 411.0
15 TraesCS5D01G529600 chr3D 81.690 213 31 7 4339 4550 592170796 592170591 2.610000e-38 171.0
16 TraesCS5D01G529600 chr3D 81.690 213 31 7 4339 4550 592239026 592238821 2.610000e-38 171.0
17 TraesCS5D01G529600 chr3D 80.751 213 33 7 4339 4550 592319312 592319107 5.660000e-35 159.0
18 TraesCS5D01G529600 chr3D 87.719 57 6 1 355 410 525535661 525535605 1.270000e-06 65.8
19 TraesCS5D01G529600 chr1D 91.964 112 9 0 2423 2534 265530328 265530217 2.030000e-34 158.0
20 TraesCS5D01G529600 chr2D 92.982 57 1 1 353 409 280649417 280649364 4.530000e-11 80.5
21 TraesCS5D01G529600 chr7B 90.164 61 4 1 352 410 92560528 92560468 1.630000e-10 78.7
22 TraesCS5D01G529600 chr4D 85.333 75 6 3 336 410 508927686 508927617 7.580000e-09 73.1
23 TraesCS5D01G529600 chr3B 85.246 61 1 4 352 410 172008066 172008012 7.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G529600 chr5D 546079701 546085155 5454 False 10074.0 10074 100.0000 1 5455 1 chr5D.!!$F1 5454
1 TraesCS5D01G529600 chr4A 623317342 623323294 5952 True 3264.9 6440 90.1225 52 5332 2 chr4A.!!$R2 5280
2 TraesCS5D01G529600 chr5B 689369869 689374638 4769 False 6348.0 6348 90.8600 688 5455 1 chr5B.!!$F1 4767
3 TraesCS5D01G529600 chr2B 67122061 67122826 765 False 726.0 726 84.1710 932 1708 1 chr2B.!!$F3 776
4 TraesCS5D01G529600 chrUn 49200648 49201439 791 True 701.0 701 83.1710 921 1715 1 chrUn.!!$R1 794
5 TraesCS5D01G529600 chr2A 64333192 64333716 524 False 411.0 411 81.2160 2272 2821 1 chr2A.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.108992 CGTGCAGTTACTCGCCCTTA 60.109 55.0 0.00 0.00 0.00 2.69 F
30 31 0.177373 CAGTTACTCGCCCTTACCCC 59.823 60.0 0.00 0.00 0.00 4.95 F
677 1450 0.178301 GGAAGTCTTTAGGGCCGAGG 59.822 60.0 0.00 0.00 0.00 4.63 F
691 1464 0.321671 CCGAGGCATGGATTCGGTAT 59.678 55.0 4.11 0.00 46.56 2.73 F
1948 2830 0.526211 CTGGTGATTCGACGAGTCCA 59.474 55.0 16.56 12.99 0.00 4.02 F
3501 4415 0.889994 TGCTGCATTGCTTAACTGGG 59.110 50.0 10.49 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 2251 0.101040 CCTGCAAATATGGTGCACGG 59.899 55.000 11.45 11.01 46.76 4.94 R
1929 2811 0.526211 TGGACTCGTCGAATCACCAG 59.474 55.000 6.00 0.00 0.00 4.00 R
2600 3498 0.392863 CAGGGCATCAACATCCGACA 60.393 55.000 0.00 0.00 0.00 4.35 R
2669 3569 2.193993 GGCTCCCCTAAAGACCAACTA 58.806 52.381 0.00 0.00 0.00 2.24 R
3916 4847 1.674441 CAGCTACCATGGCAATGTCAG 59.326 52.381 13.04 0.00 31.27 3.51 R
5153 6117 0.744874 ATCATCCGAACATCGTCCGT 59.255 50.000 0.00 0.00 38.40 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.545911 CGTGGACCGTGCAGTTAC 58.454 61.111 0.00 0.00 0.00 2.50
18 19 1.006571 CGTGGACCGTGCAGTTACT 60.007 57.895 0.00 0.00 0.00 2.24
19 20 1.007336 CGTGGACCGTGCAGTTACTC 61.007 60.000 0.00 0.00 0.00 2.59
20 21 1.007336 GTGGACCGTGCAGTTACTCG 61.007 60.000 0.00 0.00 0.00 4.18
21 22 2.092882 GGACCGTGCAGTTACTCGC 61.093 63.158 0.00 1.01 0.00 5.03
22 23 2.048503 ACCGTGCAGTTACTCGCC 60.049 61.111 0.00 0.00 0.00 5.54
23 24 2.813908 CCGTGCAGTTACTCGCCC 60.814 66.667 0.00 0.00 0.00 6.13
24 25 2.261671 CGTGCAGTTACTCGCCCT 59.738 61.111 0.00 0.00 0.00 5.19
25 26 1.374252 CGTGCAGTTACTCGCCCTT 60.374 57.895 0.00 0.00 0.00 3.95
26 27 0.108992 CGTGCAGTTACTCGCCCTTA 60.109 55.000 0.00 0.00 0.00 2.69
27 28 1.356938 GTGCAGTTACTCGCCCTTAC 58.643 55.000 0.00 0.00 0.00 2.34
28 29 0.248289 TGCAGTTACTCGCCCTTACC 59.752 55.000 4.82 0.00 0.00 2.85
29 30 0.461516 GCAGTTACTCGCCCTTACCC 60.462 60.000 0.00 0.00 0.00 3.69
30 31 0.177373 CAGTTACTCGCCCTTACCCC 59.823 60.000 0.00 0.00 0.00 4.95
31 32 1.142531 GTTACTCGCCCTTACCCCG 59.857 63.158 0.00 0.00 0.00 5.73
32 33 2.059786 TTACTCGCCCTTACCCCGG 61.060 63.158 0.00 0.00 0.00 5.73
33 34 2.512986 TTACTCGCCCTTACCCCGGA 62.513 60.000 0.73 0.00 0.00 5.14
34 35 3.846430 CTCGCCCTTACCCCGGAC 61.846 72.222 0.73 0.00 0.00 4.79
37 38 3.013327 GCCCTTACCCCGGACCTT 61.013 66.667 0.73 0.00 0.00 3.50
38 39 1.690283 GCCCTTACCCCGGACCTTA 60.690 63.158 0.73 0.00 0.00 2.69
39 40 1.058428 GCCCTTACCCCGGACCTTAT 61.058 60.000 0.73 0.00 0.00 1.73
40 41 1.514983 CCCTTACCCCGGACCTTATT 58.485 55.000 0.73 0.00 0.00 1.40
41 42 1.142262 CCCTTACCCCGGACCTTATTG 59.858 57.143 0.73 0.00 0.00 1.90
42 43 1.841919 CCTTACCCCGGACCTTATTGT 59.158 52.381 0.73 0.00 0.00 2.71
43 44 2.240414 CCTTACCCCGGACCTTATTGTT 59.760 50.000 0.73 0.00 0.00 2.83
44 45 3.455543 CCTTACCCCGGACCTTATTGTTA 59.544 47.826 0.73 0.00 0.00 2.41
45 46 4.103627 CCTTACCCCGGACCTTATTGTTAT 59.896 45.833 0.73 0.00 0.00 1.89
46 47 5.398239 CCTTACCCCGGACCTTATTGTTATT 60.398 44.000 0.73 0.00 0.00 1.40
47 48 3.893521 ACCCCGGACCTTATTGTTATTG 58.106 45.455 0.73 0.00 0.00 1.90
48 49 3.524380 ACCCCGGACCTTATTGTTATTGA 59.476 43.478 0.73 0.00 0.00 2.57
49 50 4.167307 ACCCCGGACCTTATTGTTATTGAT 59.833 41.667 0.73 0.00 0.00 2.57
50 51 4.518970 CCCCGGACCTTATTGTTATTGATG 59.481 45.833 0.73 0.00 0.00 3.07
73 74 7.739995 TGATTTCCTATCCTCTTCTCTTTGA 57.260 36.000 0.00 0.00 0.00 2.69
74 75 8.329346 TGATTTCCTATCCTCTTCTCTTTGAT 57.671 34.615 0.00 0.00 0.00 2.57
75 76 9.439461 TGATTTCCTATCCTCTTCTCTTTGATA 57.561 33.333 0.00 0.00 0.00 2.15
78 79 9.439461 TTTCCTATCCTCTTCTCTTTGATATCA 57.561 33.333 0.00 0.00 0.00 2.15
85 86 8.712103 TCCTCTTCTCTTTGATATCATGTGAAT 58.288 33.333 6.17 0.00 0.00 2.57
93 94 9.676861 TCTTTGATATCATGTGAATTGAAGAGT 57.323 29.630 6.17 0.00 0.00 3.24
122 123 2.158519 AGGACCGATCAAAGGGTTTTGT 60.159 45.455 0.00 0.00 43.33 2.83
126 127 3.895041 ACCGATCAAAGGGTTTTGTCATT 59.105 39.130 0.00 0.00 43.33 2.57
128 129 5.163353 ACCGATCAAAGGGTTTTGTCATTTT 60.163 36.000 0.00 0.00 43.33 1.82
132 182 5.669477 TCAAAGGGTTTTGTCATTTTGGAG 58.331 37.500 0.56 0.00 43.33 3.86
140 190 1.469703 TGTCATTTTGGAGCGAGCATG 59.530 47.619 0.00 0.00 0.00 4.06
150 200 2.799412 GGAGCGAGCATGATAAGTCTTG 59.201 50.000 0.00 0.00 33.79 3.02
151 201 3.491619 GGAGCGAGCATGATAAGTCTTGA 60.492 47.826 0.00 0.00 32.73 3.02
171 221 5.223449 TGAAAAGAAGATACAACTCCGGT 57.777 39.130 0.00 0.00 0.00 5.28
174 224 6.544564 TGAAAAGAAGATACAACTCCGGTTTT 59.455 34.615 0.00 0.00 32.73 2.43
204 254 5.052481 AGCAACCTTTCAATCTTGCTTTTC 58.948 37.500 0.00 0.00 45.56 2.29
215 267 0.671251 TTGCTTTTCCGCCGAAATGT 59.329 45.000 12.58 0.00 37.81 2.71
229 281 5.220006 CGCCGAAATGTCACACAAAATAATG 60.220 40.000 0.00 0.00 0.00 1.90
230 282 5.861251 GCCGAAATGTCACACAAAATAATGA 59.139 36.000 0.00 0.00 0.00 2.57
268 320 5.819379 ACTAAATGCATAGTGTCCATGTCAG 59.181 40.000 0.00 0.00 34.86 3.51
299 351 9.772973 ACAATGAAGTGTCAAACTACTAATGTA 57.227 29.630 0.00 0.00 38.56 2.29
351 403 4.879197 TGGGACATACTCTCTATGCATG 57.121 45.455 10.16 0.00 0.00 4.06
352 404 4.226384 TGGGACATACTCTCTATGCATGT 58.774 43.478 10.16 0.01 32.70 3.21
353 405 4.281941 TGGGACATACTCTCTATGCATGTC 59.718 45.833 10.16 6.09 42.98 3.06
355 407 4.815269 GACATACTCTCTATGCATGTCCC 58.185 47.826 10.16 0.00 39.58 4.46
356 408 4.226384 ACATACTCTCTATGCATGTCCCA 58.774 43.478 10.16 0.00 0.00 4.37
357 409 4.842948 ACATACTCTCTATGCATGTCCCAT 59.157 41.667 10.16 0.00 0.00 4.00
358 410 6.019108 ACATACTCTCTATGCATGTCCCATA 58.981 40.000 10.16 0.00 0.00 2.74
359 411 6.498303 ACATACTCTCTATGCATGTCCCATAA 59.502 38.462 10.16 0.00 0.00 1.90
360 412 7.181665 ACATACTCTCTATGCATGTCCCATAAT 59.818 37.037 10.16 0.00 0.00 1.28
361 413 8.699130 CATACTCTCTATGCATGTCCCATAATA 58.301 37.037 10.16 0.00 0.00 0.98
362 414 7.746243 ACTCTCTATGCATGTCCCATAATAT 57.254 36.000 10.16 0.00 0.00 1.28
363 415 8.844865 ACTCTCTATGCATGTCCCATAATATA 57.155 34.615 10.16 0.00 0.00 0.86
364 416 9.271921 ACTCTCTATGCATGTCCCATAATATAA 57.728 33.333 10.16 0.00 0.00 0.98
365 417 9.761504 CTCTCTATGCATGTCCCATAATATAAG 57.238 37.037 10.16 0.00 0.00 1.73
366 418 9.492730 TCTCTATGCATGTCCCATAATATAAGA 57.507 33.333 10.16 0.00 0.00 2.10
367 419 9.539825 CTCTATGCATGTCCCATAATATAAGAC 57.460 37.037 10.16 0.00 0.00 3.01
368 420 8.197439 TCTATGCATGTCCCATAATATAAGACG 58.803 37.037 10.16 0.00 0.00 4.18
369 421 6.109156 TGCATGTCCCATAATATAAGACGT 57.891 37.500 0.00 0.00 0.00 4.34
370 422 6.530120 TGCATGTCCCATAATATAAGACGTT 58.470 36.000 0.00 0.00 0.00 3.99
371 423 6.995686 TGCATGTCCCATAATATAAGACGTTT 59.004 34.615 0.00 0.00 0.00 3.60
372 424 7.500892 TGCATGTCCCATAATATAAGACGTTTT 59.499 33.333 0.00 0.00 0.00 2.43
373 425 8.349983 GCATGTCCCATAATATAAGACGTTTTT 58.650 33.333 0.00 0.00 0.00 1.94
374 426 9.663904 CATGTCCCATAATATAAGACGTTTTTG 57.336 33.333 0.00 0.00 0.00 2.44
375 427 7.699566 TGTCCCATAATATAAGACGTTTTTGC 58.300 34.615 0.00 0.00 0.00 3.68
376 428 7.337184 TGTCCCATAATATAAGACGTTTTTGCA 59.663 33.333 0.00 0.00 0.00 4.08
377 429 8.185505 GTCCCATAATATAAGACGTTTTTGCAA 58.814 33.333 0.00 0.00 0.00 4.08
378 430 8.402472 TCCCATAATATAAGACGTTTTTGCAAG 58.598 33.333 0.00 0.00 0.00 4.01
379 431 7.167468 CCCATAATATAAGACGTTTTTGCAAGC 59.833 37.037 0.00 0.00 0.00 4.01
380 432 7.915397 CCATAATATAAGACGTTTTTGCAAGCT 59.085 33.333 0.00 0.00 0.00 3.74
381 433 9.929722 CATAATATAAGACGTTTTTGCAAGCTA 57.070 29.630 0.00 0.00 0.00 3.32
383 435 2.688364 AGACGTTTTTGCAAGCTAGC 57.312 45.000 6.62 6.62 0.00 3.42
384 436 1.069906 AGACGTTTTTGCAAGCTAGCG 60.070 47.619 9.55 6.15 37.31 4.26
385 437 0.661020 ACGTTTTTGCAAGCTAGCGT 59.339 45.000 9.55 2.32 37.31 5.07
386 438 1.318251 CGTTTTTGCAAGCTAGCGTC 58.682 50.000 9.55 3.00 37.31 5.19
387 439 1.069906 CGTTTTTGCAAGCTAGCGTCT 60.070 47.619 9.55 0.00 37.31 4.18
388 440 2.602217 CGTTTTTGCAAGCTAGCGTCTT 60.602 45.455 9.55 0.00 37.31 3.01
389 441 3.363575 CGTTTTTGCAAGCTAGCGTCTTA 60.364 43.478 9.55 0.00 37.31 2.10
390 442 4.669197 CGTTTTTGCAAGCTAGCGTCTTAT 60.669 41.667 9.55 0.00 37.31 1.73
391 443 5.445407 CGTTTTTGCAAGCTAGCGTCTTATA 60.445 40.000 9.55 0.00 37.31 0.98
392 444 6.487103 GTTTTTGCAAGCTAGCGTCTTATAT 58.513 36.000 9.55 0.00 37.31 0.86
393 445 6.677781 TTTTGCAAGCTAGCGTCTTATATT 57.322 33.333 9.55 0.00 37.31 1.28
394 446 5.657470 TTGCAAGCTAGCGTCTTATATTG 57.343 39.130 9.55 6.88 37.31 1.90
395 447 4.693283 TGCAAGCTAGCGTCTTATATTGT 58.307 39.130 9.55 0.00 37.31 2.71
396 448 4.507756 TGCAAGCTAGCGTCTTATATTGTG 59.492 41.667 9.55 0.00 37.31 3.33
397 449 4.084328 GCAAGCTAGCGTCTTATATTGTGG 60.084 45.833 9.55 0.00 0.00 4.17
398 450 5.289595 CAAGCTAGCGTCTTATATTGTGGA 58.710 41.667 9.55 0.00 0.00 4.02
399 451 5.531122 AGCTAGCGTCTTATATTGTGGAA 57.469 39.130 9.55 0.00 0.00 3.53
400 452 5.290386 AGCTAGCGTCTTATATTGTGGAAC 58.710 41.667 9.55 0.00 37.35 3.62
401 453 4.148348 GCTAGCGTCTTATATTGTGGAACG 59.852 45.833 0.00 0.00 42.39 3.95
402 454 3.454375 AGCGTCTTATATTGTGGAACGG 58.546 45.455 0.00 0.00 42.39 4.44
403 455 3.131577 AGCGTCTTATATTGTGGAACGGA 59.868 43.478 0.00 0.00 42.39 4.69
404 456 3.489785 GCGTCTTATATTGTGGAACGGAG 59.510 47.826 0.00 0.00 42.39 4.63
405 457 4.049186 CGTCTTATATTGTGGAACGGAGG 58.951 47.826 0.00 0.00 42.39 4.30
406 458 4.377897 GTCTTATATTGTGGAACGGAGGG 58.622 47.826 0.00 0.00 42.39 4.30
407 459 4.100498 GTCTTATATTGTGGAACGGAGGGA 59.900 45.833 0.00 0.00 42.39 4.20
408 460 4.344102 TCTTATATTGTGGAACGGAGGGAG 59.656 45.833 0.00 0.00 42.39 4.30
409 461 1.946984 TATTGTGGAACGGAGGGAGT 58.053 50.000 0.00 0.00 42.39 3.85
410 462 0.324943 ATTGTGGAACGGAGGGAGTG 59.675 55.000 0.00 0.00 42.39 3.51
411 463 1.052124 TTGTGGAACGGAGGGAGTGT 61.052 55.000 0.00 0.00 42.39 3.55
417 469 0.608640 AACGGAGGGAGTGTCATGTC 59.391 55.000 0.00 0.00 0.00 3.06
419 471 0.972983 CGGAGGGAGTGTCATGTCCT 60.973 60.000 0.00 0.00 32.90 3.85
421 473 1.065854 GGAGGGAGTGTCATGTCCTTG 60.066 57.143 0.00 0.00 32.90 3.61
425 477 3.054802 AGGGAGTGTCATGTCCTTGAATC 60.055 47.826 0.00 0.00 32.90 2.52
442 494 9.303116 TCCTTGAATCTAGAGTATATCTTGACC 57.697 37.037 0.00 0.00 41.62 4.02
443 495 9.308000 CCTTGAATCTAGAGTATATCTTGACCT 57.692 37.037 0.00 0.00 41.62 3.85
450 502 8.622157 TCTAGAGTATATCTTGACCTTTCAACG 58.378 37.037 0.00 0.00 39.64 4.10
453 505 6.106673 AGTATATCTTGACCTTTCAACGGTG 58.893 40.000 0.00 0.00 36.79 4.94
456 508 2.940410 TCTTGACCTTTCAACGGTGAAC 59.060 45.455 17.13 4.87 43.52 3.18
461 513 3.323243 ACCTTTCAACGGTGAACTATCG 58.677 45.455 17.13 4.09 43.52 2.92
472 524 8.335356 CAACGGTGAACTATCGATTGATTATTT 58.665 33.333 13.87 0.00 36.11 1.40
473 525 9.537192 AACGGTGAACTATCGATTGATTATTTA 57.463 29.630 13.87 0.00 36.11 1.40
497 549 7.946381 ATATGGGTTTTCTTCTTCTCTTTCC 57.054 36.000 0.00 0.00 0.00 3.13
498 550 5.124036 TGGGTTTTCTTCTTCTCTTTCCA 57.876 39.130 0.00 0.00 0.00 3.53
499 551 5.133221 TGGGTTTTCTTCTTCTCTTTCCAG 58.867 41.667 0.00 0.00 0.00 3.86
501 553 5.009110 GGGTTTTCTTCTTCTCTTTCCAGTG 59.991 44.000 0.00 0.00 0.00 3.66
572 1345 3.914966 CAGTCAGATGTGTGTTACGAGAC 59.085 47.826 0.00 0.00 0.00 3.36
577 1350 3.568430 AGATGTGTGTTACGAGACTGACA 59.432 43.478 0.00 0.00 0.00 3.58
584 1357 5.989168 TGTGTTACGAGACTGACAATCAATT 59.011 36.000 0.00 0.00 0.00 2.32
585 1358 6.481976 TGTGTTACGAGACTGACAATCAATTT 59.518 34.615 0.00 0.00 0.00 1.82
586 1359 7.654116 TGTGTTACGAGACTGACAATCAATTTA 59.346 33.333 0.00 0.00 0.00 1.40
587 1360 8.656849 GTGTTACGAGACTGACAATCAATTTAT 58.343 33.333 0.00 0.00 0.00 1.40
588 1361 9.214957 TGTTACGAGACTGACAATCAATTTATT 57.785 29.630 0.00 0.00 0.00 1.40
672 1445 2.200373 TTGCAGGAAGTCTTTAGGGC 57.800 50.000 0.00 0.00 0.00 5.19
677 1450 0.178301 GGAAGTCTTTAGGGCCGAGG 59.822 60.000 0.00 0.00 0.00 4.63
679 1452 1.198759 AAGTCTTTAGGGCCGAGGCA 61.199 55.000 16.65 0.00 44.11 4.75
689 1462 2.505982 CCGAGGCATGGATTCGGT 59.494 61.111 4.11 0.00 46.56 4.69
690 1463 1.745890 CCGAGGCATGGATTCGGTA 59.254 57.895 4.11 0.00 46.56 4.02
691 1464 0.321671 CCGAGGCATGGATTCGGTAT 59.678 55.000 4.11 0.00 46.56 2.73
692 1465 1.432514 CGAGGCATGGATTCGGTATG 58.567 55.000 0.00 0.00 0.00 2.39
694 1467 2.806745 CGAGGCATGGATTCGGTATGTT 60.807 50.000 0.00 0.00 0.00 2.71
697 1470 4.134563 AGGCATGGATTCGGTATGTTTAC 58.865 43.478 0.00 0.00 0.00 2.01
698 1471 4.134563 GGCATGGATTCGGTATGTTTACT 58.865 43.478 0.00 0.00 0.00 2.24
699 1472 4.213482 GGCATGGATTCGGTATGTTTACTC 59.787 45.833 0.00 0.00 0.00 2.59
700 1473 5.057149 GCATGGATTCGGTATGTTTACTCT 58.943 41.667 0.00 0.00 0.00 3.24
701 1474 5.527582 GCATGGATTCGGTATGTTTACTCTT 59.472 40.000 0.00 0.00 0.00 2.85
702 1475 6.038271 GCATGGATTCGGTATGTTTACTCTTT 59.962 38.462 0.00 0.00 0.00 2.52
703 1476 6.978343 TGGATTCGGTATGTTTACTCTTTG 57.022 37.500 0.00 0.00 0.00 2.77
781 1616 8.393395 TGTAAGACAAAACGGAATATACGTAC 57.607 34.615 0.00 0.00 44.83 3.67
809 1644 3.038417 CGAGGATGGCGCGAATCC 61.038 66.667 25.61 25.61 43.47 3.01
834 1669 1.226974 ATGATCGAACGGCGTGGAG 60.227 57.895 15.70 8.42 41.80 3.86
907 1743 2.660064 CCACCCGTTCCCTCCTCTG 61.660 68.421 0.00 0.00 0.00 3.35
963 1804 2.126307 CACACGTCAGGAGCGGAG 60.126 66.667 0.00 0.00 0.00 4.63
1160 2001 2.224967 GCTGCAATCAATCCCCCTAGAT 60.225 50.000 0.00 0.00 0.00 1.98
1161 2002 3.753193 GCTGCAATCAATCCCCCTAGATT 60.753 47.826 0.00 0.00 36.92 2.40
1169 2010 4.526438 AATCCCCCTAGATTGAACCAAG 57.474 45.455 0.00 0.00 35.15 3.61
1170 2011 3.214694 TCCCCCTAGATTGAACCAAGA 57.785 47.619 0.00 0.00 0.00 3.02
1171 2012 3.747852 TCCCCCTAGATTGAACCAAGAT 58.252 45.455 0.00 0.00 0.00 2.40
1172 2013 4.119155 TCCCCCTAGATTGAACCAAGATT 58.881 43.478 0.00 0.00 0.00 2.40
1244 2099 5.545658 TCTTATTTTCCGTTGATGAGCAC 57.454 39.130 0.00 0.00 0.00 4.40
1310 2166 8.793592 AGTAACTTTGTTCTGAAGTTGTTCTTT 58.206 29.630 11.34 0.00 44.56 2.52
1332 2188 7.339466 TCTTTATTTTAGTCAGAAATGGGGAGC 59.661 37.037 0.00 0.00 0.00 4.70
1334 2190 5.772393 TTTTAGTCAGAAATGGGGAGCTA 57.228 39.130 0.00 0.00 0.00 3.32
1348 2204 5.965486 TGGGGAGCTAGTATCTTGAATCTA 58.035 41.667 0.00 0.00 0.00 1.98
1351 2207 6.152154 GGGGAGCTAGTATCTTGAATCTAGAC 59.848 46.154 0.00 0.00 33.81 2.59
1356 2212 4.475345 AGTATCTTGAATCTAGACGGCCT 58.525 43.478 0.00 0.00 0.00 5.19
1358 2214 1.757118 TCTTGAATCTAGACGGCCTGG 59.243 52.381 0.00 0.00 0.00 4.45
1359 2215 1.757118 CTTGAATCTAGACGGCCTGGA 59.243 52.381 0.00 0.00 36.79 3.86
1381 2237 4.875713 GGGTATGTGCTGCCGGGG 62.876 72.222 2.18 0.00 0.00 5.73
1394 2250 4.323477 CGGGGCGGTCCTCACAAA 62.323 66.667 0.00 0.00 35.33 2.83
1395 2251 2.671963 GGGGCGGTCCTCACAAAC 60.672 66.667 0.00 0.00 35.33 2.93
1406 2265 1.518325 CTCACAAACCGTGCACCATA 58.482 50.000 12.15 0.00 45.92 2.74
1443 2302 1.343069 GGCCTCCGAGGATTACATCT 58.657 55.000 19.33 0.00 37.67 2.90
1470 2329 0.820871 AGCAGAACCTGAGGATCGTC 59.179 55.000 4.99 8.49 38.61 4.20
1555 2414 4.585162 ACGAGAGAGAAAAGAAAGGACAGA 59.415 41.667 0.00 0.00 0.00 3.41
1648 2510 5.533154 AGAACAGATACTGATAAGGTCGGAG 59.467 44.000 5.76 0.00 36.66 4.63
1727 2590 0.533755 GTCCTGCCCATTCATCGGAG 60.534 60.000 0.00 0.00 0.00 4.63
1750 2616 3.988379 ATGCACACCAGTTGTTACAAG 57.012 42.857 0.00 0.00 35.67 3.16
1754 2620 4.884744 TGCACACCAGTTGTTACAAGTATT 59.115 37.500 5.01 0.00 35.67 1.89
1756 2622 5.685511 GCACACCAGTTGTTACAAGTATTTG 59.314 40.000 5.01 5.76 35.67 2.32
1759 2625 6.600032 ACACCAGTTGTTACAAGTATTTGACA 59.400 34.615 5.01 0.00 33.09 3.58
1761 2627 6.038936 ACCAGTTGTTACAAGTATTTGACACC 59.961 38.462 5.01 0.00 37.73 4.16
1763 2629 7.352739 CAGTTGTTACAAGTATTTGACACCTC 58.647 38.462 5.01 0.00 37.73 3.85
1784 2650 5.582665 CCTCTTTTCAGGATTACGAAAGGAG 59.417 44.000 13.86 13.86 46.66 3.69
1860 2726 1.059098 AGGTGCTTCCTGATGACACA 58.941 50.000 0.46 0.00 46.19 3.72
1869 2735 5.395103 GCTTCCTGATGACACAGACTTCTAT 60.395 44.000 0.00 0.00 39.94 1.98
1898 2764 1.267121 TCTGCCACTCTTACCTGGTC 58.733 55.000 0.63 0.00 0.00 4.02
1929 2811 7.727181 TGTCTTTCCTTTCATATCTAGTAGGC 58.273 38.462 0.00 0.00 0.00 3.93
1947 2829 0.802607 GCTGGTGATTCGACGAGTCC 60.803 60.000 16.56 8.63 0.00 3.85
1948 2830 0.526211 CTGGTGATTCGACGAGTCCA 59.474 55.000 16.56 12.99 0.00 4.02
1961 2843 1.197721 CGAGTCCACTGAATTTGTGCC 59.802 52.381 6.92 1.67 34.38 5.01
1990 2872 1.662629 CTCTAGCACAAATGACGGCAG 59.337 52.381 0.00 0.00 0.00 4.85
1992 2874 1.634757 TAGCACAAATGACGGCAGCG 61.635 55.000 0.00 0.00 0.00 5.18
2000 2882 2.125512 GACGGCAGCGTGGAGATT 60.126 61.111 0.00 0.00 0.00 2.40
2024 2906 3.610911 CTCCCCTGTTATTCTTGTGGAC 58.389 50.000 0.00 0.00 0.00 4.02
2161 3043 6.034256 CGAGGTTTGTACTACAGGATTAAACG 59.966 42.308 0.00 0.00 0.00 3.60
2168 3054 8.583810 TGTACTACAGGATTAAACGATTATGC 57.416 34.615 0.00 0.00 0.00 3.14
2177 3063 7.068103 AGGATTAAACGATTATGCATGGTTCAA 59.932 33.333 10.16 1.45 32.94 2.69
2220 3106 4.437682 AAAAGGAAGGTCACATGTCTCA 57.562 40.909 0.00 0.00 0.00 3.27
2221 3107 3.409026 AAGGAAGGTCACATGTCTCAC 57.591 47.619 0.00 0.00 0.00 3.51
2222 3108 1.625818 AGGAAGGTCACATGTCTCACC 59.374 52.381 9.33 9.33 0.00 4.02
2223 3109 1.625818 GGAAGGTCACATGTCTCACCT 59.374 52.381 12.95 12.95 41.27 4.00
2226 3112 4.543590 AAGGTCACATGTCTCACCTTAG 57.456 45.455 23.30 0.58 45.61 2.18
2290 3176 6.599356 TGTTGTACTGCTTATTCTCTGGTA 57.401 37.500 0.00 0.00 0.00 3.25
2300 3186 8.023021 TGCTTATTCTCTGGTATGTAGTGAAT 57.977 34.615 0.00 0.00 39.93 2.57
2600 3498 5.419542 TGACGCTTTATGCTAGACATTTCT 58.580 37.500 0.00 0.00 40.38 2.52
2604 3502 5.555256 CGCTTTATGCTAGACATTTCTGTCG 60.555 44.000 0.00 0.00 46.85 4.35
2963 3869 9.869757 AAAGCTGTTTGTAAAAATAGTTGAGTT 57.130 25.926 4.29 0.00 0.00 3.01
3363 4276 1.204704 TCGGATGTACTGGAGCAACAG 59.795 52.381 6.16 6.16 44.03 3.16
3501 4415 0.889994 TGCTGCATTGCTTAACTGGG 59.110 50.000 10.49 0.00 0.00 4.45
3560 4491 5.335127 CGGAAAACAGATCATTGCCTAAAG 58.665 41.667 0.00 0.00 0.00 1.85
3607 4538 7.809546 TGTATTGACAAAATAACAGGTGTGA 57.190 32.000 0.00 0.00 30.68 3.58
3618 4549 7.630242 AATAACAGGTGTGATCATTTGTAGG 57.370 36.000 0.00 0.00 0.00 3.18
3619 4550 4.908601 ACAGGTGTGATCATTTGTAGGA 57.091 40.909 0.00 0.00 0.00 2.94
3690 4621 9.764363 CTTTATGTGTAGACAAGGATATTGCTA 57.236 33.333 0.00 0.00 35.11 3.49
3733 4664 3.806521 ACTCTTGATGATCTAACGCATGC 59.193 43.478 7.91 7.91 0.00 4.06
3916 4847 7.509546 TCATCCTTATCTTCTACCAAATGTCC 58.490 38.462 0.00 0.00 0.00 4.02
3936 4867 1.674441 CTGACATTGCCATGGTAGCTG 59.326 52.381 14.67 12.66 34.27 4.24
4072 5004 6.688813 GCTACTCCATTCTTTTCTTTTATGCG 59.311 38.462 0.00 0.00 0.00 4.73
4245 5177 0.749454 GAGCATCCAGGCGAAACCAT 60.749 55.000 0.00 0.00 43.14 3.55
4277 5209 4.877251 GGCCGTGTACCATATTCTGTTAAA 59.123 41.667 0.00 0.00 0.00 1.52
4462 5395 2.287608 GGAAAAAGAAGTGACCGCCAAG 60.288 50.000 0.00 0.00 0.00 3.61
4489 5423 0.427504 CGATCGACACGAATCGCATC 59.572 55.000 10.26 0.00 41.97 3.91
4523 5457 1.073199 CGGTTGGCAAGAGAAGGGT 59.927 57.895 0.00 0.00 0.00 4.34
4610 5551 3.233980 AGAGGTGCCGACTGTGCA 61.234 61.111 0.00 0.00 36.12 4.57
4656 5617 2.432456 TGAGTAAGCACGCTGGCG 60.432 61.111 13.56 13.56 46.03 5.69
4704 5666 2.683968 TCGTAGGCAAGCAGTTTGTAG 58.316 47.619 0.00 0.00 39.08 2.74
4707 5669 2.191128 AGGCAAGCAGTTTGTAGAGG 57.809 50.000 0.00 0.00 39.08 3.69
4745 5709 2.609747 AGGTTCCTTAGCTGTCTGACA 58.390 47.619 10.50 10.50 32.15 3.58
5073 6037 7.452880 TGGAATTTATTCTCAGGTCTGTTTG 57.547 36.000 2.77 0.00 37.00 2.93
5093 6057 4.009798 TGCACTTGACAAAGTTAACACG 57.990 40.909 8.61 0.00 44.47 4.49
5153 6117 4.336993 ACTGAGCACCGAAACATAAAAACA 59.663 37.500 0.00 0.00 0.00 2.83
5202 6166 7.500992 TCAACAAAGATACCATAAGCTAGAGG 58.499 38.462 0.00 0.00 0.00 3.69
5203 6167 6.426646 ACAAAGATACCATAAGCTAGAGGG 57.573 41.667 0.00 0.00 0.00 4.30
5393 6357 4.165950 TCACAAATGCCCAGGTCTATATGT 59.834 41.667 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.092882 GCGAGTAACTGCACGGTCC 61.093 63.158 0.00 0.00 0.00 4.46
4 5 2.092882 GGCGAGTAACTGCACGGTC 61.093 63.158 0.00 0.00 0.00 4.79
5 6 2.048503 GGCGAGTAACTGCACGGT 60.049 61.111 0.00 0.00 0.00 4.83
6 7 2.781595 AAGGGCGAGTAACTGCACGG 62.782 60.000 0.00 0.00 40.18 4.94
7 8 0.108992 TAAGGGCGAGTAACTGCACG 60.109 55.000 0.00 0.00 40.18 5.34
9 10 0.248289 GGTAAGGGCGAGTAACTGCA 59.752 55.000 0.00 0.00 0.00 4.41
10 11 0.461516 GGGTAAGGGCGAGTAACTGC 60.462 60.000 0.00 0.00 0.00 4.40
12 13 1.325476 CGGGGTAAGGGCGAGTAACT 61.325 60.000 0.00 0.00 0.00 2.24
13 14 1.142531 CGGGGTAAGGGCGAGTAAC 59.857 63.158 0.00 0.00 0.00 2.50
14 15 2.059786 CCGGGGTAAGGGCGAGTAA 61.060 63.158 0.00 0.00 0.00 2.24
15 16 2.442643 CCGGGGTAAGGGCGAGTA 60.443 66.667 0.00 0.00 0.00 2.59
16 17 4.387343 TCCGGGGTAAGGGCGAGT 62.387 66.667 0.00 0.00 0.00 4.18
17 18 3.846430 GTCCGGGGTAAGGGCGAG 61.846 72.222 0.00 0.00 0.00 5.03
20 21 1.058428 ATAAGGTCCGGGGTAAGGGC 61.058 60.000 0.00 0.00 0.00 5.19
21 22 1.142262 CAATAAGGTCCGGGGTAAGGG 59.858 57.143 0.00 0.00 0.00 3.95
22 23 1.841919 ACAATAAGGTCCGGGGTAAGG 59.158 52.381 0.00 0.00 0.00 2.69
23 24 3.639672 AACAATAAGGTCCGGGGTAAG 57.360 47.619 0.00 0.00 0.00 2.34
24 25 5.191323 TCAATAACAATAAGGTCCGGGGTAA 59.809 40.000 0.00 0.00 0.00 2.85
25 26 4.720773 TCAATAACAATAAGGTCCGGGGTA 59.279 41.667 0.00 0.00 0.00 3.69
26 27 3.524380 TCAATAACAATAAGGTCCGGGGT 59.476 43.478 0.00 0.00 0.00 4.95
27 28 4.159244 TCAATAACAATAAGGTCCGGGG 57.841 45.455 0.00 0.00 0.00 5.73
28 29 5.373222 TCATCAATAACAATAAGGTCCGGG 58.627 41.667 0.00 0.00 0.00 5.73
29 30 7.510549 AATCATCAATAACAATAAGGTCCGG 57.489 36.000 0.00 0.00 0.00 5.14
30 31 8.076178 GGAAATCATCAATAACAATAAGGTCCG 58.924 37.037 0.00 0.00 0.00 4.79
31 32 9.136323 AGGAAATCATCAATAACAATAAGGTCC 57.864 33.333 0.00 0.00 0.00 4.46
40 41 9.784531 GAAGAGGATAGGAAATCATCAATAACA 57.215 33.333 2.93 0.00 31.90 2.41
43 44 9.612879 AGAGAAGAGGATAGGAAATCATCAATA 57.387 33.333 2.93 0.00 31.90 1.90
44 45 8.508969 AGAGAAGAGGATAGGAAATCATCAAT 57.491 34.615 2.93 0.00 31.90 2.57
45 46 7.927683 AGAGAAGAGGATAGGAAATCATCAA 57.072 36.000 2.93 0.00 31.90 2.57
46 47 7.927683 AAGAGAAGAGGATAGGAAATCATCA 57.072 36.000 2.93 0.00 31.90 3.07
47 48 8.428063 TCAAAGAGAAGAGGATAGGAAATCATC 58.572 37.037 0.00 0.00 0.00 2.92
48 49 8.329346 TCAAAGAGAAGAGGATAGGAAATCAT 57.671 34.615 0.00 0.00 0.00 2.45
49 50 7.739995 TCAAAGAGAAGAGGATAGGAAATCA 57.260 36.000 0.00 0.00 0.00 2.57
62 63 9.895138 TCAATTCACATGATATCAAAGAGAAGA 57.105 29.630 9.99 7.69 0.00 2.87
65 66 9.895138 TCTTCAATTCACATGATATCAAAGAGA 57.105 29.630 9.99 6.99 0.00 3.10
73 74 6.039047 GTGCCACTCTTCAATTCACATGATAT 59.961 38.462 0.00 0.00 0.00 1.63
74 75 5.355071 GTGCCACTCTTCAATTCACATGATA 59.645 40.000 0.00 0.00 0.00 2.15
75 76 4.157289 GTGCCACTCTTCAATTCACATGAT 59.843 41.667 0.00 0.00 0.00 2.45
78 79 3.489355 TGTGCCACTCTTCAATTCACAT 58.511 40.909 0.00 0.00 0.00 3.21
85 86 2.027192 GGTCCTATGTGCCACTCTTCAA 60.027 50.000 0.00 0.00 0.00 2.69
93 94 1.199615 TTGATCGGTCCTATGTGCCA 58.800 50.000 0.00 0.00 0.00 4.92
122 123 2.112380 TCATGCTCGCTCCAAAATGA 57.888 45.000 0.00 0.00 0.00 2.57
126 127 3.118629 AGACTTATCATGCTCGCTCCAAA 60.119 43.478 0.00 0.00 0.00 3.28
128 129 2.034878 AGACTTATCATGCTCGCTCCA 58.965 47.619 0.00 0.00 0.00 3.86
132 182 4.864916 TTTCAAGACTTATCATGCTCGC 57.135 40.909 0.00 0.00 0.00 5.03
150 200 6.555812 AAACCGGAGTTGTATCTTCTTTTC 57.444 37.500 9.46 0.00 35.97 2.29
151 201 6.954487 AAAACCGGAGTTGTATCTTCTTTT 57.046 33.333 9.46 0.00 35.97 2.27
155 205 5.237779 TCACAAAAACCGGAGTTGTATCTTC 59.762 40.000 9.46 0.00 35.97 2.87
164 214 2.096248 TGCTTTCACAAAAACCGGAGT 58.904 42.857 9.46 0.00 0.00 3.85
168 218 2.887337 AGGTTGCTTTCACAAAAACCG 58.113 42.857 0.00 0.00 31.02 4.44
196 246 0.671251 ACATTTCGGCGGAAAAGCAA 59.329 45.000 21.39 0.85 44.76 3.91
204 254 0.309302 TTTGTGTGACATTTCGGCGG 59.691 50.000 7.21 0.00 0.00 6.13
246 298 5.988287 TCTGACATGGACACTATGCATTTA 58.012 37.500 3.54 0.00 37.23 1.40
247 299 4.847198 TCTGACATGGACACTATGCATTT 58.153 39.130 3.54 0.00 37.23 2.32
264 316 5.991328 TGACACTTCATTGTCTTTCTGAC 57.009 39.130 4.97 0.00 45.34 3.51
268 320 7.920738 AGTAGTTTGACACTTCATTGTCTTTC 58.079 34.615 4.97 0.00 45.34 2.62
314 366 8.606830 AGTATGTCCCATAGAAAGAGAGTTTTT 58.393 33.333 0.00 0.00 0.00 1.94
323 375 7.039434 TGCATAGAGAGTATGTCCCATAGAAAG 60.039 40.741 0.00 0.00 0.00 2.62
325 377 6.314917 TGCATAGAGAGTATGTCCCATAGAA 58.685 40.000 0.00 0.00 0.00 2.10
327 379 6.154192 ACATGCATAGAGAGTATGTCCCATAG 59.846 42.308 0.00 0.00 37.72 2.23
329 381 4.842948 ACATGCATAGAGAGTATGTCCCAT 59.157 41.667 0.00 0.00 37.72 4.00
330 382 4.226384 ACATGCATAGAGAGTATGTCCCA 58.774 43.478 0.00 0.00 37.72 4.37
331 383 4.815269 GACATGCATAGAGAGTATGTCCC 58.185 47.826 0.00 0.00 46.60 4.46
335 387 4.879197 TGGGACATGCATAGAGAGTATG 57.121 45.455 0.00 0.00 35.56 2.39
351 403 7.699566 TGCAAAAACGTCTTATATTATGGGAC 58.300 34.615 0.00 0.00 0.00 4.46
352 404 7.867305 TGCAAAAACGTCTTATATTATGGGA 57.133 32.000 0.00 0.00 0.00 4.37
353 405 7.167468 GCTTGCAAAAACGTCTTATATTATGGG 59.833 37.037 0.00 0.00 0.00 4.00
354 406 7.915397 AGCTTGCAAAAACGTCTTATATTATGG 59.085 33.333 0.00 0.00 0.00 2.74
355 407 8.841444 AGCTTGCAAAAACGTCTTATATTATG 57.159 30.769 0.00 0.00 0.00 1.90
357 409 8.120465 GCTAGCTTGCAAAAACGTCTTATATTA 58.880 33.333 15.53 0.00 0.00 0.98
358 410 6.967199 GCTAGCTTGCAAAAACGTCTTATATT 59.033 34.615 15.53 0.00 0.00 1.28
359 411 6.487103 GCTAGCTTGCAAAAACGTCTTATAT 58.513 36.000 15.53 0.00 0.00 0.86
360 412 5.445407 CGCTAGCTTGCAAAAACGTCTTATA 60.445 40.000 19.99 0.00 0.00 0.98
361 413 4.669197 CGCTAGCTTGCAAAAACGTCTTAT 60.669 41.667 19.99 0.00 0.00 1.73
362 414 3.363575 CGCTAGCTTGCAAAAACGTCTTA 60.364 43.478 19.99 0.00 0.00 2.10
363 415 2.602217 CGCTAGCTTGCAAAAACGTCTT 60.602 45.455 19.99 0.00 0.00 3.01
364 416 1.069906 CGCTAGCTTGCAAAAACGTCT 60.070 47.619 19.99 0.00 0.00 4.18
365 417 1.318251 CGCTAGCTTGCAAAAACGTC 58.682 50.000 19.99 0.00 0.00 4.34
366 418 0.661020 ACGCTAGCTTGCAAAAACGT 59.339 45.000 19.99 5.69 0.00 3.99
367 419 1.069906 AGACGCTAGCTTGCAAAAACG 60.070 47.619 19.99 5.06 0.00 3.60
368 420 2.688364 AGACGCTAGCTTGCAAAAAC 57.312 45.000 19.99 6.05 0.00 2.43
369 421 6.677781 ATATAAGACGCTAGCTTGCAAAAA 57.322 33.333 19.99 1.70 0.00 1.94
370 422 6.093495 ACAATATAAGACGCTAGCTTGCAAAA 59.907 34.615 19.99 1.01 0.00 2.44
371 423 5.584649 ACAATATAAGACGCTAGCTTGCAAA 59.415 36.000 19.99 0.66 0.00 3.68
372 424 5.006649 CACAATATAAGACGCTAGCTTGCAA 59.993 40.000 19.99 0.00 0.00 4.08
373 425 4.507756 CACAATATAAGACGCTAGCTTGCA 59.492 41.667 19.99 0.10 0.00 4.08
374 426 4.084328 CCACAATATAAGACGCTAGCTTGC 60.084 45.833 13.93 10.33 0.00 4.01
375 427 5.289595 TCCACAATATAAGACGCTAGCTTG 58.710 41.667 13.93 10.08 0.00 4.01
376 428 5.531122 TCCACAATATAAGACGCTAGCTT 57.469 39.130 13.93 2.39 0.00 3.74
377 429 5.290386 GTTCCACAATATAAGACGCTAGCT 58.710 41.667 13.93 0.00 0.00 3.32
378 430 4.148348 CGTTCCACAATATAAGACGCTAGC 59.852 45.833 4.06 4.06 0.00 3.42
379 431 4.680110 CCGTTCCACAATATAAGACGCTAG 59.320 45.833 0.00 0.00 0.00 3.42
380 432 4.338964 TCCGTTCCACAATATAAGACGCTA 59.661 41.667 0.00 0.00 0.00 4.26
381 433 3.131577 TCCGTTCCACAATATAAGACGCT 59.868 43.478 0.00 0.00 0.00 5.07
382 434 3.450578 TCCGTTCCACAATATAAGACGC 58.549 45.455 0.00 0.00 0.00 5.19
383 435 4.049186 CCTCCGTTCCACAATATAAGACG 58.951 47.826 0.00 0.00 0.00 4.18
384 436 4.100498 TCCCTCCGTTCCACAATATAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
385 437 4.291792 TCCCTCCGTTCCACAATATAAGA 58.708 43.478 0.00 0.00 0.00 2.10
386 438 4.101119 ACTCCCTCCGTTCCACAATATAAG 59.899 45.833 0.00 0.00 0.00 1.73
387 439 4.035112 ACTCCCTCCGTTCCACAATATAA 58.965 43.478 0.00 0.00 0.00 0.98
388 440 3.386726 CACTCCCTCCGTTCCACAATATA 59.613 47.826 0.00 0.00 0.00 0.86
389 441 2.170607 CACTCCCTCCGTTCCACAATAT 59.829 50.000 0.00 0.00 0.00 1.28
390 442 1.553248 CACTCCCTCCGTTCCACAATA 59.447 52.381 0.00 0.00 0.00 1.90
391 443 0.324943 CACTCCCTCCGTTCCACAAT 59.675 55.000 0.00 0.00 0.00 2.71
392 444 1.052124 ACACTCCCTCCGTTCCACAA 61.052 55.000 0.00 0.00 0.00 3.33
393 445 1.458777 ACACTCCCTCCGTTCCACA 60.459 57.895 0.00 0.00 0.00 4.17
394 446 1.292541 GACACTCCCTCCGTTCCAC 59.707 63.158 0.00 0.00 0.00 4.02
395 447 0.544357 ATGACACTCCCTCCGTTCCA 60.544 55.000 0.00 0.00 0.00 3.53
396 448 0.108138 CATGACACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
397 449 0.608640 ACATGACACTCCCTCCGTTC 59.391 55.000 0.00 0.00 0.00 3.95
398 450 0.608640 GACATGACACTCCCTCCGTT 59.391 55.000 0.00 0.00 0.00 4.44
399 451 1.258445 GGACATGACACTCCCTCCGT 61.258 60.000 0.00 0.00 0.00 4.69
400 452 0.972983 AGGACATGACACTCCCTCCG 60.973 60.000 0.00 0.00 0.00 4.63
401 453 1.065854 CAAGGACATGACACTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
402 454 1.902508 TCAAGGACATGACACTCCCTC 59.097 52.381 0.00 0.00 0.00 4.30
403 455 2.030027 TCAAGGACATGACACTCCCT 57.970 50.000 0.00 0.00 0.00 4.20
404 456 2.859165 TTCAAGGACATGACACTCCC 57.141 50.000 0.00 0.00 0.00 4.30
405 457 4.213564 AGATTCAAGGACATGACACTCC 57.786 45.455 0.00 0.00 0.00 3.85
406 458 6.127479 ACTCTAGATTCAAGGACATGACACTC 60.127 42.308 0.00 0.00 0.00 3.51
407 459 5.719085 ACTCTAGATTCAAGGACATGACACT 59.281 40.000 0.00 0.00 0.00 3.55
408 460 5.971763 ACTCTAGATTCAAGGACATGACAC 58.028 41.667 0.00 0.00 0.00 3.67
409 461 7.904558 ATACTCTAGATTCAAGGACATGACA 57.095 36.000 0.00 0.00 0.00 3.58
417 469 9.308000 AGGTCAAGATATACTCTAGATTCAAGG 57.692 37.037 0.00 0.00 32.41 3.61
425 477 7.863375 CCGTTGAAAGGTCAAGATATACTCTAG 59.137 40.741 0.00 0.00 44.44 2.43
442 494 5.347635 TCAATCGATAGTTCACCGTTGAAAG 59.652 40.000 0.00 0.00 43.52 2.62
443 495 5.231702 TCAATCGATAGTTCACCGTTGAAA 58.768 37.500 0.00 0.00 43.52 2.69
472 524 8.611257 TGGAAAGAGAAGAAGAAAACCCATATA 58.389 33.333 0.00 0.00 0.00 0.86
473 525 7.470192 TGGAAAGAGAAGAAGAAAACCCATAT 58.530 34.615 0.00 0.00 0.00 1.78
475 527 5.705400 TGGAAAGAGAAGAAGAAAACCCAT 58.295 37.500 0.00 0.00 0.00 4.00
477 529 5.009110 CACTGGAAAGAGAAGAAGAAAACCC 59.991 44.000 0.00 0.00 0.00 4.11
478 530 5.823045 TCACTGGAAAGAGAAGAAGAAAACC 59.177 40.000 0.00 0.00 0.00 3.27
479 531 6.927294 TCACTGGAAAGAGAAGAAGAAAAC 57.073 37.500 0.00 0.00 0.00 2.43
520 1050 9.056005 ACTAGCTTCGCAAATATCAATTGATTA 57.944 29.630 25.26 12.10 36.05 1.75
526 1056 7.761409 TGAAAACTAGCTTCGCAAATATCAAT 58.239 30.769 0.00 0.00 0.00 2.57
527 1057 7.094805 ACTGAAAACTAGCTTCGCAAATATCAA 60.095 33.333 0.00 0.00 0.00 2.57
528 1058 6.371548 ACTGAAAACTAGCTTCGCAAATATCA 59.628 34.615 0.00 0.00 0.00 2.15
529 1059 6.776094 ACTGAAAACTAGCTTCGCAAATATC 58.224 36.000 0.00 0.00 0.00 1.63
531 1061 5.699001 TGACTGAAAACTAGCTTCGCAAATA 59.301 36.000 0.00 0.00 0.00 1.40
532 1062 4.515191 TGACTGAAAACTAGCTTCGCAAAT 59.485 37.500 0.00 0.00 0.00 2.32
533 1063 3.874543 TGACTGAAAACTAGCTTCGCAAA 59.125 39.130 0.00 0.00 0.00 3.68
534 1064 3.462982 TGACTGAAAACTAGCTTCGCAA 58.537 40.909 0.00 0.00 0.00 4.85
535 1065 3.059884 CTGACTGAAAACTAGCTTCGCA 58.940 45.455 0.00 0.00 0.00 5.10
536 1066 3.318017 TCTGACTGAAAACTAGCTTCGC 58.682 45.455 0.00 0.00 0.00 4.70
538 1068 5.698545 ACACATCTGACTGAAAACTAGCTTC 59.301 40.000 0.00 0.00 0.00 3.86
539 1069 5.468072 CACACATCTGACTGAAAACTAGCTT 59.532 40.000 0.00 0.00 0.00 3.74
540 1070 4.993584 CACACATCTGACTGAAAACTAGCT 59.006 41.667 0.00 0.00 0.00 3.32
541 1071 4.752101 ACACACATCTGACTGAAAACTAGC 59.248 41.667 0.00 0.00 0.00 3.42
554 1327 3.914966 GTCAGTCTCGTAACACACATCTG 59.085 47.826 0.00 0.00 0.00 2.90
619 1392 9.436957 CTTCACAAACTCACTACTATAAACCAT 57.563 33.333 0.00 0.00 0.00 3.55
621 1394 7.148457 GGCTTCACAAACTCACTACTATAAACC 60.148 40.741 0.00 0.00 0.00 3.27
622 1395 7.386848 TGGCTTCACAAACTCACTACTATAAAC 59.613 37.037 0.00 0.00 0.00 2.01
623 1396 7.446769 TGGCTTCACAAACTCACTACTATAAA 58.553 34.615 0.00 0.00 0.00 1.40
624 1397 6.999950 TGGCTTCACAAACTCACTACTATAA 58.000 36.000 0.00 0.00 0.00 0.98
626 1399 5.483685 TGGCTTCACAAACTCACTACTAT 57.516 39.130 0.00 0.00 0.00 2.12
627 1400 4.948341 TGGCTTCACAAACTCACTACTA 57.052 40.909 0.00 0.00 0.00 1.82
629 1402 4.893424 TTTGGCTTCACAAACTCACTAC 57.107 40.909 0.00 0.00 35.57 2.73
637 1410 3.196463 CTGCAATGTTTGGCTTCACAAA 58.804 40.909 0.00 0.00 37.96 2.83
638 1411 2.483363 CCTGCAATGTTTGGCTTCACAA 60.483 45.455 0.00 0.00 0.00 3.33
639 1412 1.068895 CCTGCAATGTTTGGCTTCACA 59.931 47.619 0.00 0.00 0.00 3.58
640 1413 1.340889 TCCTGCAATGTTTGGCTTCAC 59.659 47.619 0.00 0.00 0.00 3.18
641 1414 1.702182 TCCTGCAATGTTTGGCTTCA 58.298 45.000 0.00 0.00 0.00 3.02
642 1415 2.036346 ACTTCCTGCAATGTTTGGCTTC 59.964 45.455 0.00 0.00 0.00 3.86
643 1416 2.036346 GACTTCCTGCAATGTTTGGCTT 59.964 45.455 0.00 0.00 0.00 4.35
654 1427 0.328258 GGCCCTAAAGACTTCCTGCA 59.672 55.000 0.00 0.00 0.00 4.41
656 1429 0.902531 TCGGCCCTAAAGACTTCCTG 59.097 55.000 0.00 0.00 0.00 3.86
677 1450 5.057149 AGAGTAAACATACCGAATCCATGC 58.943 41.667 0.00 0.00 0.00 4.06
679 1452 7.110155 ACAAAGAGTAAACATACCGAATCCAT 58.890 34.615 0.00 0.00 0.00 3.41
690 1463 8.902806 TCAATCAACAGAACAAAGAGTAAACAT 58.097 29.630 0.00 0.00 0.00 2.71
691 1464 8.275015 TCAATCAACAGAACAAAGAGTAAACA 57.725 30.769 0.00 0.00 0.00 2.83
692 1465 9.387123 GATCAATCAACAGAACAAAGAGTAAAC 57.613 33.333 0.00 0.00 0.00 2.01
694 1467 8.675705 TGATCAATCAACAGAACAAAGAGTAA 57.324 30.769 0.00 0.00 33.08 2.24
762 1597 6.704512 AAACGTACGTATATTCCGTTTTGT 57.295 33.333 23.12 6.56 46.02 2.83
809 1644 1.951130 CCGTTCGATCATGCCTCGG 60.951 63.158 14.80 7.22 36.78 4.63
817 1652 2.180769 CTCCACGCCGTTCGATCA 59.819 61.111 0.00 0.00 41.67 2.92
834 1669 3.112709 GCGAGCACGTTCCTGTCC 61.113 66.667 5.23 0.00 41.98 4.02
907 1743 2.034221 GGTGGGTCACTGGGAAGC 59.966 66.667 0.00 0.00 34.40 3.86
988 1829 0.684479 CCCACCATCTCTCTCCGACA 60.684 60.000 0.00 0.00 0.00 4.35
990 1831 1.758514 GCCCACCATCTCTCTCCGA 60.759 63.158 0.00 0.00 0.00 4.55
991 1832 1.743321 GAGCCCACCATCTCTCTCCG 61.743 65.000 0.00 0.00 0.00 4.63
992 1833 1.743321 CGAGCCCACCATCTCTCTCC 61.743 65.000 0.00 0.00 0.00 3.71
993 1834 1.739049 CGAGCCCACCATCTCTCTC 59.261 63.158 0.00 0.00 0.00 3.20
994 1835 1.760086 CCGAGCCCACCATCTCTCT 60.760 63.158 0.00 0.00 0.00 3.10
1160 2001 7.201785 GGACTTCACAAACTAATCTTGGTTCAA 60.202 37.037 0.00 0.00 30.15 2.69
1161 2002 6.262273 GGACTTCACAAACTAATCTTGGTTCA 59.738 38.462 0.00 0.00 30.15 3.18
1162 2003 6.565999 CGGACTTCACAAACTAATCTTGGTTC 60.566 42.308 0.00 0.00 30.15 3.62
1163 2004 5.238650 CGGACTTCACAAACTAATCTTGGTT 59.761 40.000 0.00 0.00 32.98 3.67
1164 2005 4.755123 CGGACTTCACAAACTAATCTTGGT 59.245 41.667 0.00 0.00 0.00 3.67
1165 2006 4.154195 CCGGACTTCACAAACTAATCTTGG 59.846 45.833 0.00 0.00 0.00 3.61
1166 2007 4.378459 GCCGGACTTCACAAACTAATCTTG 60.378 45.833 5.05 0.00 0.00 3.02
1167 2008 3.751698 GCCGGACTTCACAAACTAATCTT 59.248 43.478 5.05 0.00 0.00 2.40
1168 2009 3.335579 GCCGGACTTCACAAACTAATCT 58.664 45.455 5.05 0.00 0.00 2.40
1169 2010 2.093783 CGCCGGACTTCACAAACTAATC 59.906 50.000 5.05 0.00 0.00 1.75
1170 2011 2.073816 CGCCGGACTTCACAAACTAAT 58.926 47.619 5.05 0.00 0.00 1.73
1171 2012 1.504359 CGCCGGACTTCACAAACTAA 58.496 50.000 5.05 0.00 0.00 2.24
1172 2013 0.947180 GCGCCGGACTTCACAAACTA 60.947 55.000 5.05 0.00 0.00 2.24
1244 2099 4.935352 TTCAGTCCCCTTTCAACATTTG 57.065 40.909 0.00 0.00 0.00 2.32
1310 2166 6.327386 AGCTCCCCATTTCTGACTAAAATA 57.673 37.500 0.00 0.00 0.00 1.40
1332 2188 5.708230 AGGCCGTCTAGATTCAAGATACTAG 59.292 44.000 0.00 0.00 35.19 2.57
1334 2190 4.279671 CAGGCCGTCTAGATTCAAGATACT 59.720 45.833 0.00 0.00 0.00 2.12
1356 2212 1.408683 GCAGCACATACCCTGATTCCA 60.409 52.381 0.00 0.00 0.00 3.53
1358 2214 1.312815 GGCAGCACATACCCTGATTC 58.687 55.000 0.00 0.00 0.00 2.52
1359 2215 0.464373 CGGCAGCACATACCCTGATT 60.464 55.000 0.00 0.00 0.00 2.57
1390 2246 2.609244 GCAAATATGGTGCACGGTTTGT 60.609 45.455 23.39 5.25 41.80 2.83
1391 2247 1.991965 GCAAATATGGTGCACGGTTTG 59.008 47.619 20.80 20.80 41.80 2.93
1392 2248 1.615883 TGCAAATATGGTGCACGGTTT 59.384 42.857 11.45 6.19 46.76 3.27
1394 2250 0.810648 CTGCAAATATGGTGCACGGT 59.189 50.000 11.45 4.19 46.76 4.83
1395 2251 0.101040 CCTGCAAATATGGTGCACGG 59.899 55.000 11.45 11.01 46.76 4.94
1397 2253 1.202177 CGACCTGCAAATATGGTGCAC 60.202 52.381 8.80 8.80 46.76 4.57
1406 2265 2.746277 GCCGGTCGACCTGCAAAT 60.746 61.111 36.85 0.00 44.38 2.32
1443 2302 2.288825 CCTCAGGTTCTGCTTGACGTTA 60.289 50.000 0.00 0.00 0.00 3.18
1470 2329 6.710744 ACAGTAACAGTACCTTCCAGAATTTG 59.289 38.462 0.00 0.00 0.00 2.32
1639 2501 1.443407 CATCCGATGCTCCGACCTT 59.557 57.895 0.00 0.00 0.00 3.50
1640 2502 3.133014 CATCCGATGCTCCGACCT 58.867 61.111 0.00 0.00 0.00 3.85
1697 2560 1.007842 TGGGCAGGACAGGACACTATA 59.992 52.381 0.00 0.00 0.00 1.31
1727 2590 4.300189 TGTAACAACTGGTGTGCATTTC 57.700 40.909 0.00 0.00 40.60 2.17
1750 2616 7.454260 AATCCTGAAAAGAGGTGTCAAATAC 57.546 36.000 0.00 0.00 34.36 1.89
1754 2620 4.994852 CGTAATCCTGAAAAGAGGTGTCAA 59.005 41.667 0.00 0.00 34.36 3.18
1756 2622 4.817517 TCGTAATCCTGAAAAGAGGTGTC 58.182 43.478 0.00 0.00 34.36 3.67
1759 2625 5.012768 TCCTTTCGTAATCCTGAAAAGAGGT 59.987 40.000 0.00 0.00 34.00 3.85
1761 2627 5.582665 CCTCCTTTCGTAATCCTGAAAAGAG 59.417 44.000 6.41 6.41 40.15 2.85
1763 2629 4.095036 GCCTCCTTTCGTAATCCTGAAAAG 59.905 45.833 0.00 0.00 34.00 2.27
1784 2650 3.680786 GAGGCCCGGTTGTTTGCC 61.681 66.667 8.95 8.95 44.35 4.52
1860 2726 4.285863 CAGAAGGGTCCTCATAGAAGTCT 58.714 47.826 0.00 0.00 0.00 3.24
1869 2735 1.152030 AGTGGCAGAAGGGTCCTCA 60.152 57.895 0.00 0.00 0.00 3.86
1898 2764 2.276732 TGAAAGGAAAGACAGGCCTG 57.723 50.000 31.60 31.60 31.06 4.85
1903 2769 7.870445 GCCTACTAGATATGAAAGGAAAGACAG 59.130 40.741 0.00 0.00 0.00 3.51
1929 2811 0.526211 TGGACTCGTCGAATCACCAG 59.474 55.000 6.00 0.00 0.00 4.00
1947 2829 2.490328 ACAACGGCACAAATTCAGTG 57.510 45.000 6.62 6.62 39.92 3.66
1948 2830 3.443976 GAAACAACGGCACAAATTCAGT 58.556 40.909 0.00 0.00 0.00 3.41
1961 2843 4.213270 TCATTTGTGCTAGAGGAAACAACG 59.787 41.667 0.00 0.00 32.54 4.10
2000 2882 1.992557 ACAAGAATAACAGGGGAGGCA 59.007 47.619 0.00 0.00 0.00 4.75
2009 2891 2.851263 AGCCGTCCACAAGAATAACA 57.149 45.000 0.00 0.00 0.00 2.41
2024 2906 1.953559 AGCCACATACATTGTAGCCG 58.046 50.000 2.53 0.00 43.11 5.52
2123 3005 2.150397 AACCTCGTACTGCACTGAAC 57.850 50.000 0.00 0.00 0.00 3.18
2161 3043 8.790718 AGAATCATAGTTGAACCATGCATAATC 58.209 33.333 0.00 0.00 34.96 1.75
2168 3054 8.272545 TGAAGAAGAATCATAGTTGAACCATG 57.727 34.615 0.00 0.00 34.96 3.66
2202 3088 1.625818 GGTGAGACATGTGACCTTCCT 59.374 52.381 1.15 0.00 0.00 3.36
2203 3089 1.625818 AGGTGAGACATGTGACCTTCC 59.374 52.381 1.15 1.93 35.12 3.46
2204 3090 3.409026 AAGGTGAGACATGTGACCTTC 57.591 47.619 20.54 6.04 43.92 3.46
2218 3104 9.696572 AATAGACAGTATAGTTGACTAAGGTGA 57.303 33.333 0.00 0.00 31.39 4.02
2224 3110 9.803315 CAGCAAAATAGACAGTATAGTTGACTA 57.197 33.333 5.86 0.00 0.00 2.59
2225 3111 8.314751 ACAGCAAAATAGACAGTATAGTTGACT 58.685 33.333 5.86 0.00 0.00 3.41
2226 3112 8.480643 ACAGCAAAATAGACAGTATAGTTGAC 57.519 34.615 5.86 0.00 0.00 3.18
2313 3200 9.416284 TGGATAGATACACATAGTTACAAGTCA 57.584 33.333 0.00 0.00 0.00 3.41
2342 3229 7.796054 AGAGTAACAGTATATTGCACTCCATT 58.204 34.615 18.94 6.21 35.57 3.16
2355 3248 8.046107 AGTTACGGTCTTAGAGAGTAACAGTAT 58.954 37.037 26.44 13.41 45.45 2.12
2600 3498 0.392863 CAGGGCATCAACATCCGACA 60.393 55.000 0.00 0.00 0.00 4.35
2604 3502 7.112122 TGATAATATACAGGGCATCAACATCC 58.888 38.462 0.00 0.00 0.00 3.51
2669 3569 2.193993 GGCTCCCCTAAAGACCAACTA 58.806 52.381 0.00 0.00 0.00 2.24
2687 3587 6.146898 TGAAGCAAAATTAGTTCGTTAAGGC 58.853 36.000 0.00 0.00 0.00 4.35
2963 3869 4.072131 GACATTCCTGCTGGTTGAAACTA 58.928 43.478 17.51 0.00 34.23 2.24
3071 3977 7.650504 GCAGCAATTTCAGATTAGCATAAATCA 59.349 33.333 8.56 0.00 38.16 2.57
3363 4276 9.128107 CAAAAACATACTTCACCATGTGATAAC 57.872 33.333 0.00 0.00 42.40 1.89
3501 4415 3.751698 ACCCAGCGAATTTTCTAGTGTTC 59.248 43.478 0.00 0.00 0.00 3.18
3533 4447 3.131046 GGCAATGATCTGTTTTCCGGAAT 59.869 43.478 19.62 0.51 30.50 3.01
3560 4491 7.533426 ACATCAATTATTCTCAGTTGCACTTC 58.467 34.615 0.00 0.00 0.00 3.01
3607 4538 7.770897 GGTTGATAACACTCTCCTACAAATGAT 59.229 37.037 0.00 0.00 0.00 2.45
3618 4549 7.159322 TCTAGTTCAGGTTGATAACACTCTC 57.841 40.000 0.00 0.00 0.00 3.20
3619 4550 7.397476 TCATCTAGTTCAGGTTGATAACACTCT 59.603 37.037 0.00 0.00 0.00 3.24
3733 4664 6.668323 CACCCTACAAAACATACAACAAGAG 58.332 40.000 0.00 0.00 0.00 2.85
3916 4847 1.674441 CAGCTACCATGGCAATGTCAG 59.326 52.381 13.04 0.00 31.27 3.51
3923 4854 1.993956 AAAACACAGCTACCATGGCA 58.006 45.000 13.04 0.00 0.00 4.92
3936 4867 8.641499 TCACATGGATTTAAGAACAAAAACAC 57.359 30.769 0.00 0.00 0.00 3.32
3988 4919 0.461135 AATCATGCAAATGCCCCGAC 59.539 50.000 2.46 0.00 41.18 4.79
3990 4921 2.980562 CAATCATGCAAATGCCCCG 58.019 52.632 2.46 0.00 41.18 5.73
4013 4944 3.753294 ATCTGGCTTTATACTGGGACG 57.247 47.619 0.00 0.00 0.00 4.79
4072 5004 4.985538 TCCCCTGTTAGATAATTGCATCC 58.014 43.478 0.00 0.00 0.00 3.51
4245 5177 1.069823 TGGTACACGGCCGTTTCTAAA 59.930 47.619 32.11 10.36 0.00 1.85
4489 5423 2.209838 ACCGATGTTACAGCATCTCG 57.790 50.000 0.58 0.00 42.14 4.04
4500 5434 2.154462 CTTCTCTTGCCAACCGATGTT 58.846 47.619 0.00 0.00 34.14 2.71
4656 5617 4.340381 CAGATTTTCCTTCCCATGACATCC 59.660 45.833 0.00 0.00 0.00 3.51
4704 5666 2.325484 ACATTTTGTGGTTTCCCCCTC 58.675 47.619 0.00 0.00 0.00 4.30
4707 5669 3.236047 ACCTACATTTTGTGGTTTCCCC 58.764 45.455 0.00 0.00 31.09 4.81
5026 5990 1.788229 CCCCTTTCTTGTTTGTGGGT 58.212 50.000 0.00 0.00 33.13 4.51
5073 6037 3.064271 TCCGTGTTAACTTTGTCAAGTGC 59.936 43.478 7.22 0.00 42.89 4.40
5093 6057 5.491982 ACTCATCCAGTGTGTATTCTTTCC 58.508 41.667 0.00 0.00 33.06 3.13
5153 6117 0.744874 ATCATCCGAACATCGTCCGT 59.255 50.000 0.00 0.00 38.40 4.69
5202 6166 1.836802 AGGATCCAGCTGAACTCTTCC 59.163 52.381 17.39 11.25 0.00 3.46
5203 6167 3.177997 GAGGATCCAGCTGAACTCTTC 57.822 52.381 17.39 10.48 31.74 2.87
5393 6357 6.481976 TCAAGAACAGATGAAAGAAAAGCGTA 59.518 34.615 0.00 0.00 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.