Multiple sequence alignment - TraesCS5D01G528400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G528400 chr5D 100.000 5640 0 0 1 5640 545215907 545210268 0.000000e+00 10416.0
1 TraesCS5D01G528400 chr5D 84.109 881 91 23 1606 2454 509435782 509436645 0.000000e+00 806.0
2 TraesCS5D01G528400 chr5D 79.211 1116 130 52 1664 2737 509444457 509445512 0.000000e+00 682.0
3 TraesCS5D01G528400 chr5D 78.840 879 115 37 2532 3350 509428329 509429196 1.390000e-145 527.0
4 TraesCS5D01G528400 chr5D 80.479 543 66 21 3662 4187 545171361 545170842 4.120000e-101 379.0
5 TraesCS5D01G528400 chr5D 89.247 279 25 3 4563 4837 545169134 545168857 1.500000e-90 344.0
6 TraesCS5D01G528400 chr5D 80.930 430 58 18 3464 3879 509432631 509433050 9.120000e-83 318.0
7 TraesCS5D01G528400 chr5B 88.601 2781 216 61 2245 4957 687800566 687797819 0.000000e+00 3286.0
8 TraesCS5D01G528400 chr5B 91.775 924 61 8 1298 2208 687801487 687800566 0.000000e+00 1271.0
9 TraesCS5D01G528400 chr5B 83.089 751 55 34 27 760 687802857 687802162 8.030000e-173 617.0
10 TraesCS5D01G528400 chr5B 78.924 911 121 35 2499 3350 639964201 639965099 2.300000e-153 553.0
11 TraesCS5D01G528400 chr5B 87.824 386 40 5 1664 2046 639977673 639978054 4.010000e-121 446.0
12 TraesCS5D01G528400 chr5B 86.150 426 32 12 840 1257 687802023 687801617 8.680000e-118 435.0
13 TraesCS5D01G528400 chr5B 78.689 610 78 31 3314 3879 639968028 639968629 5.370000e-95 359.0
14 TraesCS5D01G528400 chr5B 86.799 303 26 11 3522 3810 639965322 639965624 5.450000e-85 326.0
15 TraesCS5D01G528400 chr5B 86.799 303 26 11 3522 3810 639974885 639975187 5.450000e-85 326.0
16 TraesCS5D01G528400 chr5B 82.449 245 23 13 3567 3805 639974176 639974406 4.460000e-46 196.0
17 TraesCS5D01G528400 chr5B 79.600 250 40 10 5050 5296 684887049 684887290 9.720000e-38 169.0
18 TraesCS5D01G528400 chr1A 87.133 2658 219 65 2245 4837 570143461 570146060 0.000000e+00 2900.0
19 TraesCS5D01G528400 chr1A 93.016 1346 76 5 820 2157 570142099 570143434 0.000000e+00 1949.0
20 TraesCS5D01G528400 chr1A 83.867 812 51 42 27 805 570141287 570142051 0.000000e+00 701.0
21 TraesCS5D01G528400 chr4A 86.757 2658 216 71 2245 4837 624936146 624933560 0.000000e+00 2833.0
22 TraesCS5D01G528400 chr4A 92.719 1346 80 5 820 2157 624937508 624936173 0.000000e+00 1927.0
23 TraesCS5D01G528400 chr4A 83.802 747 44 42 88 805 624938254 624937556 6.160000e-179 638.0
24 TraesCS5D01G528400 chr4A 82.850 379 43 10 5266 5637 115547767 115548130 2.540000e-83 320.0
25 TraesCS5D01G528400 chr4A 88.435 147 14 3 5052 5197 115386168 115386312 2.090000e-39 174.0
26 TraesCS5D01G528400 chr5A 79.433 1269 155 41 1664 2868 636638769 636639995 0.000000e+00 800.0
27 TraesCS5D01G528400 chr5A 80.385 882 111 26 2522 3350 636629835 636630707 1.040000e-171 614.0
28 TraesCS5D01G528400 chr5A 85.256 312 34 10 3522 3821 636630974 636631285 1.530000e-80 311.0
29 TraesCS5D01G528400 chr5A 91.071 56 5 0 5035 5090 30672976 30672921 6.060000e-10 76.8
30 TraesCS5D01G528400 chr3A 80.808 594 69 27 5051 5640 55485994 55486546 1.880000e-114 424.0
31 TraesCS5D01G528400 chr3A 76.761 142 33 0 3361 3502 114042960 114043101 4.680000e-11 80.5
32 TraesCS5D01G528400 chr2B 85.664 286 35 4 1351 1632 702722554 702722271 4.270000e-76 296.0
33 TraesCS5D01G528400 chr2B 84.974 193 24 5 5050 5240 703055039 703054850 2.070000e-44 191.0
34 TraesCS5D01G528400 chr4B 78.629 248 40 10 5050 5292 381258401 381258640 9.790000e-33 152.0
35 TraesCS5D01G528400 chr3D 80.645 124 24 0 3379 3502 95948020 95948143 4.650000e-16 97.1
36 TraesCS5D01G528400 chrUn 82.278 79 8 6 5051 5126 368504662 368504737 4.720000e-06 63.9
37 TraesCS5D01G528400 chrUn 82.278 79 8 6 5051 5126 370904929 370905004 4.720000e-06 63.9
38 TraesCS5D01G528400 chr6B 82.278 79 8 6 5051 5126 713836958 713836883 4.720000e-06 63.9
39 TraesCS5D01G528400 chr3B 82.278 79 8 6 5051 5126 458421857 458421782 4.720000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G528400 chr5D 545210268 545215907 5639 True 10416.000000 10416 100.000000 1 5640 1 chr5D.!!$R1 5639
1 TraesCS5D01G528400 chr5D 509444457 509445512 1055 False 682.000000 682 79.211000 1664 2737 1 chr5D.!!$F1 1073
2 TraesCS5D01G528400 chr5D 509428329 509436645 8316 False 550.333333 806 81.293000 1606 3879 3 chr5D.!!$F2 2273
3 TraesCS5D01G528400 chr5D 545168857 545171361 2504 True 361.500000 379 84.863000 3662 4837 2 chr5D.!!$R2 1175
4 TraesCS5D01G528400 chr5B 687797819 687802857 5038 True 1402.250000 3286 87.403750 27 4957 4 chr5B.!!$R1 4930
5 TraesCS5D01G528400 chr5B 639964201 639968629 4428 False 412.666667 553 81.470667 2499 3879 3 chr5B.!!$F2 1380
6 TraesCS5D01G528400 chr5B 639974176 639978054 3878 False 322.666667 446 85.690667 1664 3810 3 chr5B.!!$F3 2146
7 TraesCS5D01G528400 chr1A 570141287 570146060 4773 False 1850.000000 2900 88.005333 27 4837 3 chr1A.!!$F1 4810
8 TraesCS5D01G528400 chr4A 624933560 624938254 4694 True 1799.333333 2833 87.759333 88 4837 3 chr4A.!!$R1 4749
9 TraesCS5D01G528400 chr5A 636638769 636639995 1226 False 800.000000 800 79.433000 1664 2868 1 chr5A.!!$F1 1204
10 TraesCS5D01G528400 chr5A 636629835 636631285 1450 False 462.500000 614 82.820500 2522 3821 2 chr5A.!!$F2 1299
11 TraesCS5D01G528400 chr3A 55485994 55486546 552 False 424.000000 424 80.808000 5051 5640 1 chr3A.!!$F1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1046 0.036952 AGACGCTGACCTTGGTGATG 60.037 55.000 0.00 0.00 0.00 3.07 F
1563 1750 1.113517 ACAGGTACGGGCGATGCTAT 61.114 55.000 0.00 0.00 0.00 2.97 F
2203 4058 0.397564 TGCTGTCATGTGGAGCTCAA 59.602 50.000 17.19 0.00 33.66 3.02 F
2435 4298 1.202687 TGAACCAGCCTGTCAGTTCTG 60.203 52.381 11.79 10.72 39.45 3.02 F
2519 4412 1.276138 CAGGCGATGGCATACTATCCA 59.724 52.381 0.00 0.00 42.47 3.41 F
3235 5206 2.026542 TGCATGAGTCCTGCTGATTTCT 60.027 45.455 19.34 0.00 40.34 2.52 F
4453 12411 0.250166 ACCTTTGGTGTGTCGGTAGC 60.250 55.000 0.00 0.00 32.98 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 3802 0.606604 TCCGGTTTACTGTCTCTGGC 59.393 55.000 0.00 0.0 0.00 4.85 R
3067 5005 2.094100 TTGGGGGTTGAAGCAAATGA 57.906 45.000 0.00 0.0 0.00 2.57 R
3881 9486 1.890876 TAACAGCACGGCAGTCAATT 58.109 45.000 0.00 0.0 0.00 2.32 R
4373 12331 2.530460 ATGGCAACCAAGATAGGCAA 57.470 45.000 0.00 0.0 40.03 4.52 R
4453 12411 8.068892 ACTAGGAAGACTGAAGGTAAATGTAG 57.931 38.462 0.00 0.0 0.00 2.74 R
4608 12704 0.957395 CGCCATGAACAGGTTCTGCT 60.957 55.000 12.86 0.0 40.14 4.24 R
5444 13551 1.992538 TCATGGTGGACAATGCAACA 58.007 45.000 0.00 0.0 40.44 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.732664 CAGTTTAAATGGCACTAAAGAAATGC 58.267 34.615 0.00 0.00 38.68 3.56
66 67 4.600111 ACAGGTCACTCCCAGGTAAATAAA 59.400 41.667 0.00 0.00 36.75 1.40
67 68 5.253096 ACAGGTCACTCCCAGGTAAATAAAT 59.747 40.000 0.00 0.00 36.75 1.40
68 69 6.445786 ACAGGTCACTCCCAGGTAAATAAATA 59.554 38.462 0.00 0.00 36.75 1.40
69 70 7.037153 ACAGGTCACTCCCAGGTAAATAAATAA 60.037 37.037 0.00 0.00 36.75 1.40
100 105 7.215789 CCATCTAGTATTATCCATCCATCAGC 58.784 42.308 0.00 0.00 0.00 4.26
199 204 5.359860 TCCCAGTTTGTTTCTTTCTTCCTTC 59.640 40.000 0.00 0.00 0.00 3.46
210 215 7.573968 TTCTTTCTTCCTTCCTTTCTTTCTG 57.426 36.000 0.00 0.00 0.00 3.02
220 225 4.451900 TCCTTTCTTTCTGTCAGGTTCAC 58.548 43.478 0.00 0.00 0.00 3.18
252 257 0.762461 CCATCACCTCCTCCTCCTCC 60.762 65.000 0.00 0.00 0.00 4.30
254 259 0.560688 ATCACCTCCTCCTCCTCCTC 59.439 60.000 0.00 0.00 0.00 3.71
303 308 5.796424 ATGTTGAGTGCCAGAAAAAGAAT 57.204 34.783 0.00 0.00 0.00 2.40
329 334 1.205055 GAAGGTACAAGGGGAGGAGG 58.795 60.000 0.00 0.00 0.00 4.30
330 335 0.496841 AAGGTACAAGGGGAGGAGGT 59.503 55.000 0.00 0.00 0.00 3.85
437 462 2.504244 CGAGACCAGCGGTTCGTC 60.504 66.667 16.13 3.88 35.25 4.20
534 559 2.506472 GATCTCCCCGGCAGGTTC 59.494 66.667 1.11 0.00 35.12 3.62
578 603 1.048724 TCTCTGATCCCGCCGGAAAT 61.049 55.000 5.05 0.00 43.10 2.17
636 661 1.501741 CGCTGGTTCGACCCAATTG 59.498 57.895 2.35 0.00 37.50 2.32
637 662 1.234615 CGCTGGTTCGACCCAATTGT 61.235 55.000 2.35 0.00 37.50 2.71
645 670 2.079049 GACCCAATTGTCGAGACGC 58.921 57.895 4.43 0.00 0.00 5.19
647 672 0.670546 ACCCAATTGTCGAGACGCTG 60.671 55.000 4.43 0.00 0.00 5.18
648 673 1.361668 CCCAATTGTCGAGACGCTGG 61.362 60.000 4.43 9.67 0.00 4.85
649 674 0.389817 CCAATTGTCGAGACGCTGGA 60.390 55.000 4.43 0.00 32.10 3.86
650 675 1.645034 CAATTGTCGAGACGCTGGAT 58.355 50.000 0.00 0.00 0.00 3.41
651 676 2.002586 CAATTGTCGAGACGCTGGATT 58.997 47.619 0.00 0.00 0.00 3.01
652 677 1.927895 ATTGTCGAGACGCTGGATTC 58.072 50.000 0.00 0.00 0.00 2.52
653 678 0.456142 TTGTCGAGACGCTGGATTCG 60.456 55.000 0.00 0.00 34.56 3.34
654 679 1.303091 TGTCGAGACGCTGGATTCGA 61.303 55.000 0.00 0.00 39.48 3.71
655 680 0.590230 GTCGAGACGCTGGATTCGAG 60.590 60.000 0.00 0.00 42.03 4.04
656 681 1.025113 TCGAGACGCTGGATTCGAGT 61.025 55.000 0.00 0.00 37.18 4.18
657 682 0.179161 CGAGACGCTGGATTCGAGTT 60.179 55.000 0.00 0.00 35.19 3.01
658 683 1.732732 CGAGACGCTGGATTCGAGTTT 60.733 52.381 0.00 0.00 35.19 2.66
674 699 8.698973 ATTCGAGTTTATCTCTGAGGATCTTA 57.301 34.615 4.59 0.00 40.75 2.10
684 709 7.502060 TCTCTGAGGATCTTAGTCCAATTTT 57.498 36.000 4.59 0.00 40.90 1.82
686 711 7.180946 TCTCTGAGGATCTTAGTCCAATTTTGA 59.819 37.037 4.59 0.00 40.90 2.69
695 720 8.752005 TCTTAGTCCAATTTTGATAGGGATTG 57.248 34.615 0.00 0.00 0.00 2.67
734 759 2.418976 GAGGGTCGCTGGTGTTTTTATC 59.581 50.000 0.00 0.00 0.00 1.75
748 773 6.434340 GGTGTTTTTATCCAGTGGATCTTCTT 59.566 38.462 28.15 6.95 42.11 2.52
763 788 0.685097 TTCTTGGTCTCTGGGTTCGG 59.315 55.000 0.00 0.00 0.00 4.30
765 790 2.111999 CTTGGTCTCTGGGTTCGGCA 62.112 60.000 0.00 0.00 0.00 5.69
766 791 1.488705 TTGGTCTCTGGGTTCGGCAT 61.489 55.000 0.00 0.00 0.00 4.40
769 794 1.541233 GGTCTCTGGGTTCGGCATATG 60.541 57.143 0.00 0.00 0.00 1.78
805 849 6.127479 GGAGATGTGTACTCTGACTGAAGAAT 60.127 42.308 0.00 0.00 35.10 2.40
806 850 7.238486 AGATGTGTACTCTGACTGAAGAATT 57.762 36.000 0.00 0.00 0.00 2.17
809 853 8.939201 ATGTGTACTCTGACTGAAGAATTATG 57.061 34.615 0.00 0.00 0.00 1.90
810 854 8.122472 TGTGTACTCTGACTGAAGAATTATGA 57.878 34.615 0.00 0.00 0.00 2.15
811 855 8.029522 TGTGTACTCTGACTGAAGAATTATGAC 58.970 37.037 0.00 0.00 0.00 3.06
814 858 9.081997 GTACTCTGACTGAAGAATTATGACTTG 57.918 37.037 0.00 0.00 0.00 3.16
836 913 4.092821 TGTCTGCGATTTAATCTTGAACGG 59.907 41.667 3.34 0.00 0.00 4.44
838 925 5.006746 GTCTGCGATTTAATCTTGAACGGAT 59.993 40.000 3.34 0.00 0.00 4.18
862 949 2.414785 GGTGGGCAGCCGTTATTGG 61.415 63.158 5.00 0.00 0.00 3.16
868 955 0.744414 GCAGCCGTTATTGGAGCAGA 60.744 55.000 0.00 0.00 33.39 4.26
886 973 0.322816 GATGGTGGAGGAAGCTGCAA 60.323 55.000 1.02 0.00 0.00 4.08
906 993 0.543277 TGGCAGTAGGCTGATCCTTG 59.457 55.000 0.00 0.00 44.75 3.61
912 999 0.107508 TAGGCTGATCCTTGTGCTGC 60.108 55.000 0.00 0.00 44.75 5.25
917 1004 2.646930 CTGATCCTTGTGCTGCCAATA 58.353 47.619 0.00 0.00 0.00 1.90
959 1046 0.036952 AGACGCTGACCTTGGTGATG 60.037 55.000 0.00 0.00 0.00 3.07
968 1055 5.191727 TGACCTTGGTGATGTCCATTAAT 57.808 39.130 0.00 0.00 37.33 1.40
969 1056 5.579047 TGACCTTGGTGATGTCCATTAATT 58.421 37.500 0.00 0.00 37.33 1.40
970 1057 5.652014 TGACCTTGGTGATGTCCATTAATTC 59.348 40.000 0.00 0.00 37.33 2.17
971 1058 4.640201 ACCTTGGTGATGTCCATTAATTCG 59.360 41.667 0.00 0.00 37.33 3.34
972 1059 4.036734 CCTTGGTGATGTCCATTAATTCGG 59.963 45.833 0.00 0.00 37.33 4.30
973 1060 4.229304 TGGTGATGTCCATTAATTCGGT 57.771 40.909 0.00 0.00 31.96 4.69
974 1061 5.360649 TGGTGATGTCCATTAATTCGGTA 57.639 39.130 0.00 0.00 31.96 4.02
975 1062 5.746284 TGGTGATGTCCATTAATTCGGTAA 58.254 37.500 0.00 0.00 31.96 2.85
977 1064 6.831353 TGGTGATGTCCATTAATTCGGTAAAT 59.169 34.615 0.00 0.00 31.96 1.40
1008 1095 1.227380 CAGCTGGGAGATGGCGTAC 60.227 63.158 5.57 0.00 0.00 3.67
1232 1327 8.918202 AATTGTACTGTTTGAGGTAGAATGAA 57.082 30.769 0.00 0.00 33.96 2.57
1276 1403 8.642908 TGTATTTAGTCTACGATGAAATGGTG 57.357 34.615 0.00 0.00 35.49 4.17
1329 1513 3.400255 GTGTGTTCTAGAACCTGGGAAC 58.600 50.000 28.43 19.84 40.46 3.62
1373 1559 5.541845 TGCTCTGTTATGCCTCATGTATAC 58.458 41.667 0.00 0.00 0.00 1.47
1388 1574 4.655762 TGTATACTCACAGCAAGCCTAG 57.344 45.455 4.17 0.00 0.00 3.02
1402 1588 4.809673 CAAGCCTAGGGAAAATTGTTGAC 58.190 43.478 11.72 0.00 0.00 3.18
1439 1625 9.408069 ACTTGTTTTACTAGATAAAGTGACTCG 57.592 33.333 0.00 0.00 34.22 4.18
1451 1638 8.877779 AGATAAAGTGACTCGATTCTTCATTTG 58.122 33.333 4.29 0.00 0.00 2.32
1552 1739 1.274167 TGGTCTGCCTAAACAGGTACG 59.726 52.381 0.00 0.00 38.26 3.67
1563 1750 1.113517 ACAGGTACGGGCGATGCTAT 61.114 55.000 0.00 0.00 0.00 2.97
1599 1790 9.793252 GACAATCTATATGTTTTGCTGTGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
1634 1825 7.389803 TGATATGGTGGTTAATGAAACAGTG 57.610 36.000 0.00 0.00 40.08 3.66
1647 1838 3.493129 TGAAACAGTGCGTCAGTTACATC 59.507 43.478 0.00 0.00 0.00 3.06
1838 3676 4.686839 AAAGGTTCTTCAAGATAAGCGC 57.313 40.909 0.00 0.00 0.00 5.92
1964 3802 5.926542 TCTTAATCTTGTCCTTGAGTTCGTG 59.073 40.000 0.00 0.00 0.00 4.35
2036 3874 3.624777 AGTGCCCCTCATTTATGTCAAG 58.375 45.455 0.00 0.00 0.00 3.02
2057 3895 6.040955 TCAAGCTATACACTTATCAGGTCTGG 59.959 42.308 0.00 0.00 0.00 3.86
2083 3921 5.324409 TGACCTGGCAGTTATTTTTCTGAT 58.676 37.500 14.43 0.00 34.02 2.90
2118 3969 7.395772 TGCACAATTGTCCTCCATCTTTATTTA 59.604 33.333 8.48 0.00 0.00 1.40
2203 4058 0.397564 TGCTGTCATGTGGAGCTCAA 59.602 50.000 17.19 0.00 33.66 3.02
2205 4060 1.735386 CTGTCATGTGGAGCTCAAGG 58.265 55.000 17.19 2.21 0.00 3.61
2260 4115 7.778185 AGTGTAGGATATGTATGTTCCCTAC 57.222 40.000 0.00 0.00 43.77 3.18
2268 4123 8.648693 GGATATGTATGTTCCCTACTTAGTTGT 58.351 37.037 0.00 0.00 0.00 3.32
2299 4155 3.871485 TGTTTTTGTGCCTGCTTGAAAT 58.129 36.364 0.00 0.00 0.00 2.17
2301 4157 4.094590 TGTTTTTGTGCCTGCTTGAAATTG 59.905 37.500 0.00 0.00 0.00 2.32
2302 4158 2.529780 TTGTGCCTGCTTGAAATTGG 57.470 45.000 0.00 0.00 0.00 3.16
2304 4161 2.591923 TGTGCCTGCTTGAAATTGGTA 58.408 42.857 0.00 0.00 0.00 3.25
2339 4196 5.833667 TGAGTACTGTATTGGGACCTATCTG 59.166 44.000 0.00 0.00 0.00 2.90
2340 4197 5.148502 AGTACTGTATTGGGACCTATCTGG 58.851 45.833 0.00 0.00 42.93 3.86
2380 4237 5.885230 TTCACATTGATGGCTTCACTAAG 57.115 39.130 2.09 0.00 32.84 2.18
2383 4240 6.003326 TCACATTGATGGCTTCACTAAGAAA 58.997 36.000 2.09 0.00 35.40 2.52
2384 4241 6.489700 TCACATTGATGGCTTCACTAAGAAAA 59.510 34.615 2.09 0.00 35.40 2.29
2435 4298 1.202687 TGAACCAGCCTGTCAGTTCTG 60.203 52.381 11.79 10.72 39.45 3.02
2457 4342 6.038603 TCTGCTGTCTTTGGATTTATGTATGC 59.961 38.462 0.00 0.00 0.00 3.14
2461 4346 8.405531 GCTGTCTTTGGATTTATGTATGCTTAA 58.594 33.333 0.00 0.00 0.00 1.85
2509 4402 7.553881 AAATGTATATTATACAGGCGATGGC 57.446 36.000 18.66 0.00 38.90 4.40
2512 4405 7.354751 TGTATATTATACAGGCGATGGCATA 57.645 36.000 11.64 0.00 42.47 3.14
2519 4412 1.276138 CAGGCGATGGCATACTATCCA 59.724 52.381 0.00 0.00 42.47 3.41
2521 4414 3.132824 CAGGCGATGGCATACTATCCATA 59.867 47.826 0.00 0.00 42.74 2.74
2525 4418 5.590259 GGCGATGGCATACTATCCATATTTT 59.410 40.000 0.00 0.00 42.74 1.82
2554 4447 9.303537 AGCGAGATAAGTACTTGTAAATCTTTC 57.696 33.333 18.56 12.29 0.00 2.62
2555 4448 9.084164 GCGAGATAAGTACTTGTAAATCTTTCA 57.916 33.333 18.56 0.00 0.00 2.69
2593 4490 8.392479 AGGTTATCTCTAGGGACTACGATAAAT 58.608 37.037 0.00 0.00 38.63 1.40
2595 4492 8.676401 GTTATCTCTAGGGACTACGATAAATCC 58.324 40.741 0.00 0.00 38.63 3.01
2597 4494 6.239396 TCTCTAGGGACTACGATAAATCCTG 58.761 44.000 0.00 0.00 41.75 3.86
2623 4520 7.834068 ACTGTATAACTGATGAATCACACAC 57.166 36.000 0.00 0.00 32.50 3.82
2626 4523 9.586435 CTGTATAACTGATGAATCACACACTAA 57.414 33.333 0.00 0.00 32.50 2.24
2627 4524 9.936759 TGTATAACTGATGAATCACACACTAAA 57.063 29.630 0.00 0.00 32.50 1.85
2629 4526 6.808008 AACTGATGAATCACACACTAAAGG 57.192 37.500 0.00 0.00 32.50 3.11
2631 4528 5.934625 ACTGATGAATCACACACTAAAGGAC 59.065 40.000 0.00 0.00 32.50 3.85
2635 4532 4.841813 TGAATCACACACTAAAGGACCCTA 59.158 41.667 0.00 0.00 0.00 3.53
2653 4550 6.431234 GGACCCTAATTATTTACATGCCTCAG 59.569 42.308 0.00 0.00 0.00 3.35
2661 4558 4.778213 TTTACATGCCTCAGCTAATCCT 57.222 40.909 0.00 0.00 40.80 3.24
2665 4562 3.070734 ACATGCCTCAGCTAATCCTGTAG 59.929 47.826 0.00 0.00 40.80 2.74
2687 4584 9.719355 TGTAGTTCTGCTGATTTTGTTCTTATA 57.281 29.630 0.00 0.00 0.00 0.98
2728 4641 5.675684 TGAGTTCTGCCATACATCTGTTA 57.324 39.130 0.00 0.00 0.00 2.41
2732 4645 4.760530 TCTGCCATACATCTGTTAGCTT 57.239 40.909 0.00 0.00 0.00 3.74
2734 4647 5.118990 TCTGCCATACATCTGTTAGCTTTC 58.881 41.667 0.00 0.00 0.00 2.62
2738 4651 5.355350 GCCATACATCTGTTAGCTTTCTGTT 59.645 40.000 0.00 0.00 0.00 3.16
2747 4660 5.879237 TGTTAGCTTTCTGTTGTTGTTCAG 58.121 37.500 0.00 0.00 0.00 3.02
2755 4670 4.780815 TCTGTTGTTGTTCAGGTCAGAAT 58.219 39.130 0.00 0.00 32.30 2.40
2770 4685 4.385825 GTCAGAATTATAATGTCCCGGCA 58.614 43.478 0.00 0.00 0.00 5.69
2791 4706 4.512571 GCAATGCAACAGAATTGTTCCTTT 59.487 37.500 0.00 0.00 45.53 3.11
2799 4714 6.635030 ACAGAATTGTTCCTTTAGTTGTCC 57.365 37.500 0.00 0.00 32.28 4.02
2803 4718 8.846211 CAGAATTGTTCCTTTAGTTGTCCTTTA 58.154 33.333 0.00 0.00 0.00 1.85
2804 4719 9.067986 AGAATTGTTCCTTTAGTTGTCCTTTAG 57.932 33.333 0.00 0.00 0.00 1.85
2842 4764 9.655769 GATTAGCACACAATGTGATTGTTATAG 57.344 33.333 21.34 0.00 45.71 1.31
2846 4768 8.227935 AGCACACAATGTGATTGTTATAGGTCA 61.228 37.037 21.34 0.00 45.71 4.02
2869 4791 8.778358 GTCATCTTATCATTGTTCCTGTAATCC 58.222 37.037 0.00 0.00 0.00 3.01
2870 4792 8.717717 TCATCTTATCATTGTTCCTGTAATCCT 58.282 33.333 0.00 0.00 0.00 3.24
2951 4877 4.635765 CACCGTGATATCAAACCACAGAAT 59.364 41.667 7.07 0.00 0.00 2.40
3034 4972 3.698040 CCCTCAAATCCCTCTGAATTGTG 59.302 47.826 0.00 0.00 35.69 3.33
3036 4974 5.500234 CCTCAAATCCCTCTGAATTGTGTA 58.500 41.667 0.00 0.00 35.69 2.90
3046 4984 5.578727 CCTCTGAATTGTGTAGCTAGTTGAC 59.421 44.000 0.00 0.00 0.00 3.18
3065 5003 7.060421 AGTTGACCTTTCTTTACATCAGGAAA 58.940 34.615 0.00 0.00 0.00 3.13
3067 5005 8.360390 GTTGACCTTTCTTTACATCAGGAAAAT 58.640 33.333 0.00 0.00 0.00 1.82
3076 5014 8.587608 TCTTTACATCAGGAAAATCATTTGCTT 58.412 29.630 0.00 0.00 43.76 3.91
3077 5015 8.761575 TTTACATCAGGAAAATCATTTGCTTC 57.238 30.769 0.00 0.00 43.76 3.86
3079 5017 6.761312 ACATCAGGAAAATCATTTGCTTCAA 58.239 32.000 0.00 0.00 43.76 2.69
3080 5018 6.647895 ACATCAGGAAAATCATTTGCTTCAAC 59.352 34.615 0.00 0.00 43.76 3.18
3081 5019 5.540911 TCAGGAAAATCATTTGCTTCAACC 58.459 37.500 0.00 0.00 43.76 3.77
3082 5020 4.692155 CAGGAAAATCATTTGCTTCAACCC 59.308 41.667 0.00 0.00 43.76 4.11
3083 5021 4.002982 GGAAAATCATTTGCTTCAACCCC 58.997 43.478 0.00 0.00 34.37 4.95
3084 5022 3.701205 AAATCATTTGCTTCAACCCCC 57.299 42.857 0.00 0.00 0.00 5.40
3176 5144 3.001533 GTGATTTTGGCAGTGCAAAAGTG 59.998 43.478 16.94 0.00 32.73 3.16
3235 5206 2.026542 TGCATGAGTCCTGCTGATTTCT 60.027 45.455 19.34 0.00 40.34 2.52
3236 5207 2.355132 GCATGAGTCCTGCTGATTTCTG 59.645 50.000 12.62 0.00 36.68 3.02
3260 5231 8.592105 TGAAAGAACATGCTAAAATTTCTTGG 57.408 30.769 6.12 0.00 36.78 3.61
3296 5271 2.154462 GTGTGCACTTCTGCCAGTAAT 58.846 47.619 19.41 0.00 43.51 1.89
3304 5279 3.844211 ACTTCTGCCAGTAATCTACCCAA 59.156 43.478 0.00 0.00 0.00 4.12
3307 5282 3.844211 TCTGCCAGTAATCTACCCAAACT 59.156 43.478 0.00 0.00 0.00 2.66
3327 5302 8.773645 CCAAACTTGGGAATTTCTAAATTGTTC 58.226 33.333 5.44 0.00 44.70 3.18
3343 5319 6.956299 AATTGTTCTGATGTAATGCTTTGC 57.044 33.333 0.00 0.00 0.00 3.68
3344 5320 4.439305 TGTTCTGATGTAATGCTTTGCC 57.561 40.909 0.00 0.00 0.00 4.52
3437 5413 8.744568 TCATATTTGGTGCAACTGAATATACA 57.255 30.769 17.69 9.30 34.75 2.29
3881 9486 5.694006 CGATTTGGTGCATACTTTTGGAAAA 59.306 36.000 0.00 0.00 0.00 2.29
3911 9516 3.062234 GCCGTGCTGTTAAATAGTGAGAC 59.938 47.826 0.00 0.00 0.00 3.36
3953 9567 8.948631 AAGTCATTTTGATGTCATCTATACGT 57.051 30.769 13.90 0.00 0.00 3.57
3954 9568 8.948631 AGTCATTTTGATGTCATCTATACGTT 57.051 30.769 13.90 0.00 0.00 3.99
3980 9595 6.529829 TCAGGCGCAAAATTAAATCAACATAC 59.470 34.615 10.83 0.00 0.00 2.39
4194 10856 5.006746 GCTCGTTTATGTTCTAACCATGGAG 59.993 44.000 21.47 6.41 0.00 3.86
4360 12318 2.549754 AGCAGTCAAACCTTCACATTCG 59.450 45.455 0.00 0.00 0.00 3.34
4453 12411 0.250166 ACCTTTGGTGTGTCGGTAGC 60.250 55.000 0.00 0.00 32.98 3.58
4647 12743 0.669318 CTCCGCACCTAGTTTTCGCA 60.669 55.000 0.00 0.00 0.00 5.10
4658 12754 0.721718 GTTTTCGCATGTCCTCTCCG 59.278 55.000 0.00 0.00 0.00 4.63
4661 12757 1.532604 TTCGCATGTCCTCTCCGTGT 61.533 55.000 0.00 0.00 0.00 4.49
4681 12778 0.992802 TTTTTCGCGTTGTTTGGTGC 59.007 45.000 5.77 0.00 0.00 5.01
4778 12879 1.181098 AGGGTGCATGTGAGGTTTGC 61.181 55.000 0.00 0.00 36.91 3.68
4793 12895 1.340889 GTTTGCAGGCTTGATGGTTGA 59.659 47.619 0.00 0.00 0.00 3.18
4811 12913 7.806409 TGGTTGATGTGTATAGATGATTTGG 57.194 36.000 0.00 0.00 0.00 3.28
4820 12922 6.263168 GTGTATAGATGATTTGGGGTTTCTGG 59.737 42.308 0.00 0.00 0.00 3.86
4840 12942 4.214310 TGGAAGTTTCTTGCTTGGATGAA 58.786 39.130 3.09 0.00 0.00 2.57
4867 12972 6.695292 ATGCAATCAAAATCGTTCAGAAAC 57.305 33.333 0.00 0.00 0.00 2.78
4870 12975 7.366513 TGCAATCAAAATCGTTCAGAAACATA 58.633 30.769 0.00 0.00 34.93 2.29
4910 13015 6.588204 TCATAGTTATTACGACCAATGCCTT 58.412 36.000 0.00 0.00 0.00 4.35
4911 13016 7.051623 TCATAGTTATTACGACCAATGCCTTT 58.948 34.615 0.00 0.00 0.00 3.11
4935 13040 5.241662 AGGCTTCATCAGTTTACTCTTCAC 58.758 41.667 0.00 0.00 0.00 3.18
4936 13041 4.997395 GGCTTCATCAGTTTACTCTTCACA 59.003 41.667 0.00 0.00 0.00 3.58
4946 13051 7.234782 TCAGTTTACTCTTCACAGAAGGGAATA 59.765 37.037 13.21 0.00 0.00 1.75
4948 13053 8.043710 AGTTTACTCTTCACAGAAGGGAATATG 58.956 37.037 13.21 0.00 0.00 1.78
4949 13054 7.496346 TTACTCTTCACAGAAGGGAATATGT 57.504 36.000 13.21 0.00 0.00 2.29
4950 13055 5.738909 ACTCTTCACAGAAGGGAATATGTG 58.261 41.667 13.21 0.00 43.44 3.21
4953 13058 4.908601 TCACAGAAGGGAATATGTGTGT 57.091 40.909 4.31 0.00 42.80 3.72
4954 13059 5.241403 TCACAGAAGGGAATATGTGTGTT 57.759 39.130 4.31 0.00 42.80 3.32
4955 13060 5.003160 TCACAGAAGGGAATATGTGTGTTG 58.997 41.667 4.31 0.00 42.80 3.33
4956 13061 4.156556 CACAGAAGGGAATATGTGTGTTGG 59.843 45.833 0.00 0.00 38.54 3.77
4957 13062 4.202567 ACAGAAGGGAATATGTGTGTTGGT 60.203 41.667 0.00 0.00 0.00 3.67
4958 13063 5.013704 ACAGAAGGGAATATGTGTGTTGGTA 59.986 40.000 0.00 0.00 0.00 3.25
4959 13064 5.586243 CAGAAGGGAATATGTGTGTTGGTAG 59.414 44.000 0.00 0.00 0.00 3.18
4960 13065 5.250774 AGAAGGGAATATGTGTGTTGGTAGT 59.749 40.000 0.00 0.00 0.00 2.73
4961 13066 5.514500 AGGGAATATGTGTGTTGGTAGTT 57.486 39.130 0.00 0.00 0.00 2.24
4962 13067 5.253330 AGGGAATATGTGTGTTGGTAGTTG 58.747 41.667 0.00 0.00 0.00 3.16
4963 13068 5.013704 AGGGAATATGTGTGTTGGTAGTTGA 59.986 40.000 0.00 0.00 0.00 3.18
4964 13069 5.708230 GGGAATATGTGTGTTGGTAGTTGAA 59.292 40.000 0.00 0.00 0.00 2.69
4968 13073 9.341899 GAATATGTGTGTTGGTAGTTGAAATTC 57.658 33.333 0.00 0.00 0.00 2.17
4970 13075 6.516739 TGTGTGTTGGTAGTTGAAATTCAA 57.483 33.333 4.03 4.03 33.32 2.69
4973 13078 8.037758 TGTGTGTTGGTAGTTGAAATTCAATTT 58.962 29.630 11.87 6.35 38.79 1.82
5020 13125 4.899352 AAACACTAGGAGCATCAGAAGT 57.101 40.909 0.00 0.00 36.25 3.01
5023 13128 5.234466 ACACTAGGAGCATCAGAAGTTTT 57.766 39.130 0.00 0.00 36.25 2.43
5024 13129 5.625150 ACACTAGGAGCATCAGAAGTTTTT 58.375 37.500 0.00 0.00 36.25 1.94
5087 13192 1.774727 CGTTGCTGCGGAAATTTGC 59.225 52.632 0.00 0.00 0.00 3.68
5151 13256 8.966868 TGGTATGAGAACCTTTTATGGAATTTC 58.033 33.333 0.00 0.00 40.44 2.17
5152 13257 8.966868 GGTATGAGAACCTTTTATGGAATTTCA 58.033 33.333 0.00 0.00 36.53 2.69
5232 13338 9.467258 TCTTATGAAAGAAGTCAAGCAAAATTG 57.533 29.630 0.00 0.00 38.81 2.32
5234 13340 7.704789 ATGAAAGAAGTCAAGCAAAATTGTC 57.295 32.000 0.00 0.00 0.00 3.18
5368 13475 8.248904 GGATATGATCCTCTATTAGAGTGCAT 57.751 38.462 17.41 17.24 46.19 3.96
5369 13476 8.359642 GGATATGATCCTCTATTAGAGTGCATC 58.640 40.741 17.41 14.88 46.19 3.91
5374 13481 3.005261 CCTCTATTAGAGTGCATCGCAGT 59.995 47.826 17.41 0.00 45.60 4.40
5379 13486 7.039270 TCTATTAGAGTGCATCGCAGTAAAAA 58.961 34.615 0.00 0.00 42.74 1.94
5454 13561 6.272318 CCAAATCGGTATTATGTTGCATTGT 58.728 36.000 0.00 0.00 0.00 2.71
5456 13563 5.689383 ATCGGTATTATGTTGCATTGTCC 57.311 39.130 0.00 0.00 0.00 4.02
5462 13569 4.453177 TTATGTTGCATTGTCCACCATG 57.547 40.909 0.00 0.00 0.00 3.66
5463 13570 1.992538 TGTTGCATTGTCCACCATGA 58.007 45.000 0.00 0.00 0.00 3.07
5465 13572 2.492881 TGTTGCATTGTCCACCATGATC 59.507 45.455 0.00 0.00 0.00 2.92
5468 13575 1.679680 GCATTGTCCACCATGATCCAG 59.320 52.381 0.00 0.00 0.00 3.86
5485 13592 6.778821 TGATCCAGTTTTGAGAGAATAACCA 58.221 36.000 0.00 0.00 0.00 3.67
5487 13594 7.391554 TGATCCAGTTTTGAGAGAATAACCAAG 59.608 37.037 0.00 0.00 0.00 3.61
5489 13596 5.770162 CCAGTTTTGAGAGAATAACCAAGGT 59.230 40.000 0.00 0.00 0.00 3.50
5491 13598 7.201911 CCAGTTTTGAGAGAATAACCAAGGTTT 60.202 37.037 10.13 0.00 39.31 3.27
5492 13599 8.846211 CAGTTTTGAGAGAATAACCAAGGTTTA 58.154 33.333 10.13 0.00 39.31 2.01
5493 13600 8.847196 AGTTTTGAGAGAATAACCAAGGTTTAC 58.153 33.333 10.13 2.73 39.31 2.01
5502 13609 8.710239 AGAATAACCAAGGTTTACAAAAATGGT 58.290 29.630 10.13 0.00 39.31 3.55
5510 13617 6.999950 AGGTTTACAAAAATGGTATGGTTCC 58.000 36.000 0.00 0.00 0.00 3.62
5512 13619 7.951245 AGGTTTACAAAAATGGTATGGTTCCTA 59.049 33.333 0.00 0.00 0.00 2.94
5513 13620 8.586744 GGTTTACAAAAATGGTATGGTTCCTAA 58.413 33.333 0.00 0.00 0.00 2.69
5545 13652 6.902224 TCATATACACTCCATTTTGTGACG 57.098 37.500 0.00 0.00 37.59 4.35
5548 13655 7.490079 TCATATACACTCCATTTTGTGACGTAC 59.510 37.037 0.00 0.00 37.59 3.67
5553 13660 5.907391 CACTCCATTTTGTGACGTACTTTTC 59.093 40.000 0.00 0.00 36.38 2.29
5567 13674 4.508124 CGTACTTTTCTAATAGGCTGCCAG 59.492 45.833 22.65 9.52 0.00 4.85
5612 14609 6.381707 CCAAATGATGATCATAATGGGCCATA 59.618 38.462 21.54 3.91 38.92 2.74
5613 14610 7.070696 CCAAATGATGATCATAATGGGCCATAT 59.929 37.037 21.54 9.58 38.92 1.78
5614 14611 9.138596 CAAATGATGATCATAATGGGCCATATA 57.861 33.333 21.54 14.32 35.76 0.86
5615 14612 9.892444 AAATGATGATCATAATGGGCCATATAT 57.108 29.630 21.54 15.87 35.76 0.86
5624 14621 8.150296 TCATAATGGGCCATATATACTTGATCG 58.850 37.037 21.54 5.94 0.00 3.69
5628 14625 5.105351 TGGGCCATATATACTTGATCGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.410728 CGCATTTCTTTAGTGCCATTTAAACTG 60.411 37.037 0.00 0.00 35.51 3.16
2 3 6.584563 TCGCATTTCTTTAGTGCCATTTAAAC 59.415 34.615 0.00 0.00 35.51 2.01
5 6 5.888691 TCGCATTTCTTTAGTGCCATTTA 57.111 34.783 0.00 0.00 35.51 1.40
6 7 4.782019 TCGCATTTCTTTAGTGCCATTT 57.218 36.364 0.00 0.00 35.51 2.32
7 8 4.989279 ATCGCATTTCTTTAGTGCCATT 57.011 36.364 0.00 0.00 35.51 3.16
8 9 6.294176 GGATTATCGCATTTCTTTAGTGCCAT 60.294 38.462 0.00 0.00 35.51 4.40
9 10 5.008613 GGATTATCGCATTTCTTTAGTGCCA 59.991 40.000 0.00 0.00 35.51 4.92
12 13 8.397906 TGAAAGGATTATCGCATTTCTTTAGTG 58.602 33.333 13.39 0.00 32.42 2.74
14 15 8.397906 TGTGAAAGGATTATCGCATTTCTTTAG 58.602 33.333 13.39 0.00 31.55 1.85
15 16 8.275015 TGTGAAAGGATTATCGCATTTCTTTA 57.725 30.769 13.39 3.01 31.55 1.85
16 17 7.156876 TGTGAAAGGATTATCGCATTTCTTT 57.843 32.000 13.39 5.23 31.55 2.52
17 18 6.757897 TGTGAAAGGATTATCGCATTTCTT 57.242 33.333 13.39 0.00 31.55 2.52
18 19 6.543465 TGATGTGAAAGGATTATCGCATTTCT 59.457 34.615 13.39 0.21 44.42 2.52
19 20 6.634436 GTGATGTGAAAGGATTATCGCATTTC 59.366 38.462 3.64 8.34 44.42 2.17
20 21 6.095300 TGTGATGTGAAAGGATTATCGCATTT 59.905 34.615 3.64 0.00 44.42 2.32
21 22 5.589855 TGTGATGTGAAAGGATTATCGCATT 59.410 36.000 3.64 0.00 44.42 3.56
22 23 5.125356 TGTGATGTGAAAGGATTATCGCAT 58.875 37.500 1.80 1.80 46.38 4.73
23 24 4.512484 TGTGATGTGAAAGGATTATCGCA 58.488 39.130 0.00 0.00 40.05 5.10
24 25 4.024556 CCTGTGATGTGAAAGGATTATCGC 60.025 45.833 0.00 0.00 30.92 4.58
25 26 5.118990 ACCTGTGATGTGAAAGGATTATCG 58.881 41.667 0.00 0.00 33.78 2.92
69 70 9.973880 TGGATGGATAATACTAGATGGGATATT 57.026 33.333 0.00 0.00 0.00 1.28
100 105 2.995258 CAGCGAAAAATTGGTGGATTGG 59.005 45.455 0.00 0.00 0.00 3.16
199 204 4.455606 AGTGAACCTGACAGAAAGAAAGG 58.544 43.478 3.32 0.00 0.00 3.11
210 215 2.481952 GAGCATGTGAAGTGAACCTGAC 59.518 50.000 0.00 0.00 0.00 3.51
220 225 1.741706 GGTGATGGTGAGCATGTGAAG 59.258 52.381 0.12 0.00 0.00 3.02
252 257 6.127925 TGGCATGCAGTAGAAAAATAGTTGAG 60.128 38.462 21.36 0.00 0.00 3.02
254 259 5.953183 TGGCATGCAGTAGAAAAATAGTTG 58.047 37.500 21.36 0.00 0.00 3.16
303 308 3.585732 CTCCCCTTGTACCTTCCAAACTA 59.414 47.826 0.00 0.00 0.00 2.24
423 448 2.432628 CTGGACGAACCGCTGGTC 60.433 66.667 0.69 0.00 42.61 4.02
437 462 1.227380 CCGCGATTCTTCTCCCTGG 60.227 63.158 8.23 0.00 0.00 4.45
489 514 3.311871 CCGAAAATTCTGGAGCAGATCAG 59.688 47.826 0.00 0.00 40.39 2.90
534 559 3.190535 CCAAGAACCATTACCTGAAACCG 59.809 47.826 0.00 0.00 0.00 4.44
610 635 4.680237 CGAACCAGCGGCAGACCA 62.680 66.667 1.45 0.00 34.57 4.02
618 643 1.234615 ACAATTGGGTCGAACCAGCG 61.235 55.000 23.72 16.95 42.47 5.18
636 661 0.590230 CTCGAATCCAGCGTCTCGAC 60.590 60.000 0.00 0.00 35.52 4.20
637 662 1.025113 ACTCGAATCCAGCGTCTCGA 61.025 55.000 0.00 0.00 37.95 4.04
639 664 1.997669 AAACTCGAATCCAGCGTCTC 58.002 50.000 0.00 0.00 0.00 3.36
641 666 3.707793 AGATAAACTCGAATCCAGCGTC 58.292 45.455 0.00 0.00 0.00 5.19
642 667 3.707793 GAGATAAACTCGAATCCAGCGT 58.292 45.455 0.00 0.00 35.84 5.07
652 677 7.308348 GGACTAAGATCCTCAGAGATAAACTCG 60.308 44.444 0.00 0.00 41.72 4.18
653 678 7.504238 TGGACTAAGATCCTCAGAGATAAACTC 59.496 40.741 0.00 0.00 41.38 3.01
654 679 7.358263 TGGACTAAGATCCTCAGAGATAAACT 58.642 38.462 0.00 0.00 39.75 2.66
655 680 7.589958 TGGACTAAGATCCTCAGAGATAAAC 57.410 40.000 0.00 0.00 39.75 2.01
656 681 8.789767 ATTGGACTAAGATCCTCAGAGATAAA 57.210 34.615 0.00 0.00 39.75 1.40
657 682 8.789767 AATTGGACTAAGATCCTCAGAGATAA 57.210 34.615 0.00 0.00 39.75 1.75
658 683 8.789767 AAATTGGACTAAGATCCTCAGAGATA 57.210 34.615 0.00 0.00 39.75 1.98
695 720 1.521681 CTCCAAATCGCGAGGGACC 60.522 63.158 16.66 0.00 0.00 4.46
734 759 2.836981 AGAGACCAAGAAGATCCACTGG 59.163 50.000 0.00 0.00 0.00 4.00
748 773 0.616395 TATGCCGAACCCAGAGACCA 60.616 55.000 0.00 0.00 0.00 4.02
779 823 4.034285 TCAGTCAGAGTACACATCTCCA 57.966 45.455 0.00 0.00 32.93 3.86
805 849 8.390354 CAAGATTAAATCGCAGACAAGTCATAA 58.610 33.333 2.72 0.00 42.51 1.90
806 850 7.763985 TCAAGATTAAATCGCAGACAAGTCATA 59.236 33.333 2.72 0.00 42.51 2.15
809 853 6.408858 TCAAGATTAAATCGCAGACAAGTC 57.591 37.500 0.00 0.00 42.51 3.01
810 854 6.603095 GTTCAAGATTAAATCGCAGACAAGT 58.397 36.000 0.00 0.00 42.51 3.16
811 855 5.729883 CGTTCAAGATTAAATCGCAGACAAG 59.270 40.000 0.00 0.00 42.51 3.16
814 858 4.328983 TCCGTTCAAGATTAAATCGCAGAC 59.671 41.667 0.00 0.00 42.51 3.51
862 949 0.463474 GCTTCCTCCACCATCTGCTC 60.463 60.000 0.00 0.00 0.00 4.26
868 955 0.333993 ATTGCAGCTTCCTCCACCAT 59.666 50.000 0.00 0.00 0.00 3.55
906 993 1.336125 GGCTCATCTTATTGGCAGCAC 59.664 52.381 0.00 0.00 0.00 4.40
912 999 2.502295 GCAGAGGGCTCATCTTATTGG 58.498 52.381 0.00 0.00 40.25 3.16
959 1046 7.913821 GTGAGGAAATTTACCGAATTAATGGAC 59.086 37.037 0.00 0.00 36.96 4.02
968 1055 5.317808 TGATTGGTGAGGAAATTTACCGAA 58.682 37.500 0.00 0.00 35.98 4.30
969 1056 4.912586 TGATTGGTGAGGAAATTTACCGA 58.087 39.130 0.00 0.00 35.98 4.69
970 1057 4.438744 GCTGATTGGTGAGGAAATTTACCG 60.439 45.833 0.00 0.00 35.98 4.02
971 1058 4.706962 AGCTGATTGGTGAGGAAATTTACC 59.293 41.667 0.00 0.00 0.00 2.85
972 1059 5.393461 CCAGCTGATTGGTGAGGAAATTTAC 60.393 44.000 17.39 0.00 46.27 2.01
973 1060 4.706476 CCAGCTGATTGGTGAGGAAATTTA 59.294 41.667 17.39 0.00 46.27 1.40
974 1061 3.512724 CCAGCTGATTGGTGAGGAAATTT 59.487 43.478 17.39 0.00 46.27 1.82
975 1062 3.094572 CCAGCTGATTGGTGAGGAAATT 58.905 45.455 17.39 0.00 46.27 1.82
977 1064 1.272092 CCCAGCTGATTGGTGAGGAAA 60.272 52.381 17.39 0.00 46.27 3.13
1276 1403 1.714414 CAGAGCAGAATCACGCAGC 59.286 57.895 0.00 0.00 0.00 5.25
1329 1513 1.089920 AGCCAGAGCATAAAACTGCG 58.910 50.000 0.00 0.00 46.86 5.18
1373 1559 0.615331 TTCCCTAGGCTTGCTGTGAG 59.385 55.000 2.05 0.00 0.00 3.51
1402 1588 7.199766 TCTAGTAAAACAAGTTGCAATGTTGG 58.800 34.615 16.91 1.06 39.57 3.77
1439 1625 5.957798 TCATTGTCCTGCAAATGAAGAATC 58.042 37.500 8.71 0.00 40.91 2.52
1451 1638 1.022735 CATCTGGCTCATTGTCCTGC 58.977 55.000 0.00 0.00 0.00 4.85
1552 1739 4.331168 GTCAAGATGAATATAGCATCGCCC 59.669 45.833 10.94 1.47 45.18 6.13
1599 1790 4.917385 ACCACCATATCAGCAAACTGTAA 58.083 39.130 0.00 0.00 44.77 2.41
1600 1791 4.568072 ACCACCATATCAGCAAACTGTA 57.432 40.909 0.00 0.00 44.77 2.74
1604 1795 6.449635 TCATTAACCACCATATCAGCAAAC 57.550 37.500 0.00 0.00 0.00 2.93
1647 1838 0.950836 TTCCAACCACATGTTCTGCG 59.049 50.000 0.00 0.00 34.00 5.18
1650 1841 2.091885 ACCAGTTCCAACCACATGTTCT 60.092 45.455 0.00 0.00 34.00 3.01
1758 3595 4.462483 GGCCTGGAAATTGACAATAACAGA 59.538 41.667 19.90 3.46 0.00 3.41
1774 3611 0.690192 TTCTCGACATTTGGCCTGGA 59.310 50.000 3.32 0.00 0.00 3.86
1775 3612 1.200020 GTTTCTCGACATTTGGCCTGG 59.800 52.381 3.32 0.00 0.00 4.45
1838 3676 7.495135 AATTTGCAATTCCCTGTTTTTGTAG 57.505 32.000 0.00 0.00 0.00 2.74
1964 3802 0.606604 TCCGGTTTACTGTCTCTGGC 59.393 55.000 0.00 0.00 0.00 4.85
2036 3874 4.561105 GCCAGACCTGATAAGTGTATAGC 58.439 47.826 0.00 0.00 0.00 2.97
2083 3921 4.260985 AGGACAATTGTGCATAACATCGA 58.739 39.130 28.72 0.00 38.99 3.59
2149 4004 4.138487 GGTAACAAGTATGCCTAGTGCT 57.862 45.455 5.06 0.00 42.00 4.40
2203 4058 9.856162 TTTAGTAACCAAGAAAATTCTGTACCT 57.144 29.630 0.00 0.00 37.65 3.08
2235 4090 8.676020 AGTAGGGAACATACATATCCTACACTA 58.324 37.037 16.51 0.00 45.35 2.74
2239 4094 9.531158 ACTAAGTAGGGAACATACATATCCTAC 57.469 37.037 8.75 8.75 44.07 3.18
2242 4097 8.648693 ACAACTAAGTAGGGAACATACATATCC 58.351 37.037 0.00 0.00 0.00 2.59
2245 4100 8.636213 GCTACAACTAAGTAGGGAACATACATA 58.364 37.037 0.00 0.00 41.37 2.29
2246 4101 7.125204 TGCTACAACTAAGTAGGGAACATACAT 59.875 37.037 0.00 0.00 41.37 2.29
2247 4102 6.438108 TGCTACAACTAAGTAGGGAACATACA 59.562 38.462 0.00 0.00 41.37 2.29
2248 4103 6.870769 TGCTACAACTAAGTAGGGAACATAC 58.129 40.000 0.00 0.00 41.37 2.39
2279 4134 4.496175 CCAATTTCAAGCAGGCACAAAAAC 60.496 41.667 0.00 0.00 0.00 2.43
2280 4135 3.626670 CCAATTTCAAGCAGGCACAAAAA 59.373 39.130 0.00 0.00 0.00 1.94
2282 4137 2.170187 ACCAATTTCAAGCAGGCACAAA 59.830 40.909 0.00 0.00 0.00 2.83
2283 4138 1.761784 ACCAATTTCAAGCAGGCACAA 59.238 42.857 0.00 0.00 0.00 3.33
2285 4140 3.874392 ATACCAATTTCAAGCAGGCAC 57.126 42.857 0.00 0.00 0.00 5.01
2395 4252 7.132863 GGTTCAGTATGTTTGAAAGTCTCAAC 58.867 38.462 0.00 0.00 38.27 3.18
2396 4253 6.826231 TGGTTCAGTATGTTTGAAAGTCTCAA 59.174 34.615 0.00 0.00 38.50 3.02
2403 4260 4.278170 CAGGCTGGTTCAGTATGTTTGAAA 59.722 41.667 6.61 0.00 36.41 2.69
2435 4298 6.382869 AGCATACATAAATCCAAAGACAGC 57.617 37.500 0.00 0.00 0.00 4.40
2457 4342 9.353999 GAAAATAGCACCTTGTGGTTAATTAAG 57.646 33.333 4.10 0.00 46.05 1.85
2461 4346 8.644374 TTAGAAAATAGCACCTTGTGGTTAAT 57.356 30.769 4.10 0.00 46.05 1.40
2487 4372 6.233905 TGCCATCGCCTGTATAATATACAT 57.766 37.500 12.91 0.00 0.00 2.29
2495 4388 4.341235 GGATAGTATGCCATCGCCTGTATA 59.659 45.833 0.00 0.00 0.00 1.47
2497 4390 2.496070 GGATAGTATGCCATCGCCTGTA 59.504 50.000 0.00 0.00 0.00 2.74
2528 4421 9.303537 GAAAGATTTACAAGTACTTATCTCGCT 57.696 33.333 15.67 6.91 0.00 4.93
2529 4422 9.084164 TGAAAGATTTACAAGTACTTATCTCGC 57.916 33.333 15.67 12.07 0.00 5.03
2550 4443 9.482627 GAGATAACCTTCATACTACCATGAAAG 57.517 37.037 0.00 0.00 42.73 2.62
2554 4447 8.744652 CCTAGAGATAACCTTCATACTACCATG 58.255 40.741 0.00 0.00 0.00 3.66
2555 4448 7.896496 CCCTAGAGATAACCTTCATACTACCAT 59.104 40.741 0.00 0.00 0.00 3.55
2593 4490 8.414003 GTGATTCATCAGTTATACAGTACAGGA 58.586 37.037 0.00 0.00 37.51 3.86
2595 4492 9.025020 GTGTGATTCATCAGTTATACAGTACAG 57.975 37.037 0.00 0.00 37.51 2.74
2597 4494 8.808529 GTGTGTGATTCATCAGTTATACAGTAC 58.191 37.037 0.00 0.00 37.51 2.73
2623 4520 8.793592 GGCATGTAAATAATTAGGGTCCTTTAG 58.206 37.037 0.00 0.00 0.00 1.85
2626 4523 6.922540 AGGCATGTAAATAATTAGGGTCCTT 58.077 36.000 0.00 0.00 0.00 3.36
2627 4524 6.102615 TGAGGCATGTAAATAATTAGGGTCCT 59.897 38.462 0.00 0.00 0.00 3.85
2629 4526 6.072452 GCTGAGGCATGTAAATAATTAGGGTC 60.072 42.308 0.00 0.00 38.54 4.46
2631 4528 6.006449 AGCTGAGGCATGTAAATAATTAGGG 58.994 40.000 0.00 0.00 41.70 3.53
2635 4532 7.946776 AGGATTAGCTGAGGCATGTAAATAATT 59.053 33.333 0.00 0.00 41.70 1.40
2653 4550 4.392921 TCAGCAGAACTACAGGATTAGC 57.607 45.455 0.00 0.00 0.00 3.09
2659 4556 5.471456 AGAACAAAATCAGCAGAACTACAGG 59.529 40.000 0.00 0.00 0.00 4.00
2661 4558 6.942532 AAGAACAAAATCAGCAGAACTACA 57.057 33.333 0.00 0.00 0.00 2.74
2665 4562 9.334693 CTGTTATAAGAACAAAATCAGCAGAAC 57.665 33.333 0.00 0.00 0.00 3.01
2698 4595 9.193806 AGATGTATGGCAGAACTCAAAATAATT 57.806 29.630 0.00 0.00 0.00 1.40
2699 4596 8.627403 CAGATGTATGGCAGAACTCAAAATAAT 58.373 33.333 0.00 0.00 0.00 1.28
2703 4600 5.316167 ACAGATGTATGGCAGAACTCAAAA 58.684 37.500 0.00 0.00 0.00 2.44
2706 4603 4.558226 AACAGATGTATGGCAGAACTCA 57.442 40.909 0.00 0.00 0.00 3.41
2728 4641 3.356290 ACCTGAACAACAACAGAAAGCT 58.644 40.909 0.00 0.00 36.38 3.74
2732 4645 4.214986 TCTGACCTGAACAACAACAGAA 57.785 40.909 0.00 0.00 36.38 3.02
2734 4647 5.505173 AATTCTGACCTGAACAACAACAG 57.495 39.130 0.00 0.00 0.00 3.16
2738 4651 8.862325 ACATTATAATTCTGACCTGAACAACA 57.138 30.769 0.00 0.00 0.00 3.33
2747 4660 3.751698 GCCGGGACATTATAATTCTGACC 59.248 47.826 2.18 0.00 0.00 4.02
2755 4670 2.937519 TGCATTGCCGGGACATTATAA 58.062 42.857 2.18 0.00 0.00 0.98
2803 4718 9.618890 ATTGTGTGCTAATCAATACTCAATACT 57.381 29.630 0.00 0.00 36.24 2.12
2804 4719 9.655769 CATTGTGTGCTAATCAATACTCAATAC 57.344 33.333 0.00 0.00 36.00 1.89
2842 4764 8.682936 ATTACAGGAACAATGATAAGATGACC 57.317 34.615 0.00 0.00 0.00 4.02
2951 4877 8.302515 AGAGGGTTAATAATCTTACGAGAACA 57.697 34.615 0.00 0.00 35.07 3.18
3004 4942 6.634041 TCAGAGGGATTTGAGGGAAGATATA 58.366 40.000 0.00 0.00 0.00 0.86
3034 4972 7.817962 TGATGTAAAGAAAGGTCAACTAGCTAC 59.182 37.037 0.00 0.00 33.87 3.58
3036 4974 6.769512 TGATGTAAAGAAAGGTCAACTAGCT 58.230 36.000 0.00 0.00 37.60 3.32
3046 4984 9.933723 AAATGATTTTCCTGATGTAAAGAAAGG 57.066 29.630 0.00 0.00 30.49 3.11
3065 5003 2.618794 TGGGGGTTGAAGCAAATGATT 58.381 42.857 0.00 0.00 0.00 2.57
3067 5005 2.094100 TTGGGGGTTGAAGCAAATGA 57.906 45.000 0.00 0.00 0.00 2.57
3073 5011 4.551702 AAAATGTATTGGGGGTTGAAGC 57.448 40.909 0.00 0.00 0.00 3.86
3076 5014 7.178805 GGTTAGTAAAAATGTATTGGGGGTTGA 59.821 37.037 0.00 0.00 0.00 3.18
3077 5015 7.179516 AGGTTAGTAAAAATGTATTGGGGGTTG 59.820 37.037 0.00 0.00 0.00 3.77
3079 5017 6.807286 AGGTTAGTAAAAATGTATTGGGGGT 58.193 36.000 0.00 0.00 0.00 4.95
3080 5018 8.057011 ACTAGGTTAGTAAAAATGTATTGGGGG 58.943 37.037 0.00 0.00 37.23 5.40
3109 5071 3.073356 TGGGTTAACCTACAGTGGAAAGG 59.927 47.826 23.69 6.84 41.11 3.11
3235 5206 8.203485 ACCAAGAAATTTTAGCATGTTCTTTCA 58.797 29.630 3.25 0.00 36.62 2.69
3236 5207 8.593492 ACCAAGAAATTTTAGCATGTTCTTTC 57.407 30.769 3.25 2.17 36.62 2.62
3286 5261 4.222124 AGTTTGGGTAGATTACTGGCAG 57.778 45.455 14.16 14.16 0.00 4.85
3304 5279 8.923270 TCAGAACAATTTAGAAATTCCCAAGTT 58.077 29.630 0.00 0.00 36.52 2.66
3307 5282 8.869109 ACATCAGAACAATTTAGAAATTCCCAA 58.131 29.630 0.00 0.00 36.52 4.12
3327 5302 6.072342 TGCATATAGGCAAAGCATTACATCAG 60.072 38.462 10.09 0.00 41.65 2.90
3343 5319 3.242867 TCTCCCTTGACCTGCATATAGG 58.757 50.000 0.00 0.00 43.71 2.57
3344 5320 3.306641 GCTCTCCCTTGACCTGCATATAG 60.307 52.174 0.00 0.00 0.00 1.31
3437 5413 2.299867 GGACCACAAATCAATGGCAGTT 59.700 45.455 0.00 0.00 39.84 3.16
3881 9486 1.890876 TAACAGCACGGCAGTCAATT 58.109 45.000 0.00 0.00 0.00 2.32
3911 9516 6.791887 ATGACTTCTGTGCCGATTATTATG 57.208 37.500 0.00 0.00 0.00 1.90
3920 9525 3.058016 ACATCAAAATGACTTCTGTGCCG 60.058 43.478 0.00 0.00 36.67 5.69
3953 9567 5.755375 TGTTGATTTAATTTTGCGCCTGAAA 59.245 32.000 4.18 3.85 0.00 2.69
3954 9568 5.292765 TGTTGATTTAATTTTGCGCCTGAA 58.707 33.333 4.18 0.00 0.00 3.02
3980 9595 4.938226 GGTAACAGAGGAACCATGAGAAAG 59.062 45.833 0.00 0.00 33.28 2.62
4271 12229 3.680920 GAGGGGAGGAAGAGGGCGA 62.681 68.421 0.00 0.00 0.00 5.54
4321 12279 5.923204 ACTGCTGCTACTGCTATTTAGATT 58.077 37.500 0.00 0.00 40.48 2.40
4373 12331 2.530460 ATGGCAACCAAGATAGGCAA 57.470 45.000 0.00 0.00 40.03 4.52
4453 12411 8.068892 ACTAGGAAGACTGAAGGTAAATGTAG 57.931 38.462 0.00 0.00 0.00 2.74
4608 12704 0.957395 CGCCATGAACAGGTTCTGCT 60.957 55.000 12.86 0.00 40.14 4.24
4681 12778 1.621672 GCTTCCCTCCAGAGTCCAGG 61.622 65.000 0.00 0.00 0.00 4.45
4778 12879 2.165167 ACACATCAACCATCAAGCCTG 58.835 47.619 0.00 0.00 0.00 4.85
4793 12895 7.503566 CAGAAACCCCAAATCATCTATACACAT 59.496 37.037 0.00 0.00 0.00 3.21
4811 12913 2.959030 AGCAAGAAACTTCCAGAAACCC 59.041 45.455 0.00 0.00 0.00 4.11
4820 12922 6.449698 TCAATTCATCCAAGCAAGAAACTTC 58.550 36.000 0.00 0.00 0.00 3.01
4910 13015 6.874134 GTGAAGAGTAAACTGATGAAGCCTAA 59.126 38.462 0.00 0.00 0.00 2.69
4911 13016 6.014584 TGTGAAGAGTAAACTGATGAAGCCTA 60.015 38.462 0.00 0.00 0.00 3.93
4923 13028 7.824779 ACATATTCCCTTCTGTGAAGAGTAAAC 59.175 37.037 8.69 0.00 0.00 2.01
4935 13040 4.335416 ACCAACACACATATTCCCTTCTG 58.665 43.478 0.00 0.00 0.00 3.02
4936 13041 4.657814 ACCAACACACATATTCCCTTCT 57.342 40.909 0.00 0.00 0.00 2.85
4946 13051 6.707440 TGAATTTCAACTACCAACACACAT 57.293 33.333 0.00 0.00 0.00 3.21
4948 13053 8.419076 AAATTGAATTTCAACTACCAACACAC 57.581 30.769 13.80 0.00 39.45 3.82
4949 13054 9.442047 AAAAATTGAATTTCAACTACCAACACA 57.558 25.926 13.80 0.00 39.45 3.72
5023 13128 9.217278 TGAATAAACCATAGTAACACGCTAAAA 57.783 29.630 0.00 0.00 0.00 1.52
5024 13129 8.774890 TGAATAAACCATAGTAACACGCTAAA 57.225 30.769 0.00 0.00 0.00 1.85
5026 13131 8.658609 GTTTGAATAAACCATAGTAACACGCTA 58.341 33.333 0.00 0.00 40.19 4.26
5027 13132 7.389607 AGTTTGAATAAACCATAGTAACACGCT 59.610 33.333 0.00 0.00 45.77 5.07
5028 13133 7.524065 AGTTTGAATAAACCATAGTAACACGC 58.476 34.615 0.00 0.00 45.77 5.34
5038 13143 9.574516 GGGTATCATCTAGTTTGAATAAACCAT 57.425 33.333 15.60 0.00 45.77 3.55
5039 13144 7.996644 GGGGTATCATCTAGTTTGAATAAACCA 59.003 37.037 15.60 0.00 45.77 3.67
5040 13145 7.172703 CGGGGTATCATCTAGTTTGAATAAACC 59.827 40.741 0.00 7.61 45.77 3.27
5041 13146 7.307811 GCGGGGTATCATCTAGTTTGAATAAAC 60.308 40.741 2.95 0.00 45.13 2.01
5042 13147 6.708949 GCGGGGTATCATCTAGTTTGAATAAA 59.291 38.462 2.95 0.00 0.00 1.40
5044 13149 5.566032 CGCGGGGTATCATCTAGTTTGAATA 60.566 44.000 0.00 0.00 0.00 1.75
5046 13151 3.491964 CGCGGGGTATCATCTAGTTTGAA 60.492 47.826 0.00 0.00 0.00 2.69
5047 13152 2.035449 CGCGGGGTATCATCTAGTTTGA 59.965 50.000 0.00 1.55 0.00 2.69
5048 13153 2.404215 CGCGGGGTATCATCTAGTTTG 58.596 52.381 0.00 0.00 0.00 2.93
5091 13196 9.778741 TCACTATAAGTTTTATTCCTATGCAGG 57.221 33.333 0.00 0.00 44.17 4.85
5123 13228 9.492730 AATTCCATAAAAGGTTCTCATACCATT 57.507 29.630 0.00 0.00 40.82 3.16
5124 13229 9.492730 AAATTCCATAAAAGGTTCTCATACCAT 57.507 29.630 0.00 0.00 40.82 3.55
5125 13230 8.893563 AAATTCCATAAAAGGTTCTCATACCA 57.106 30.769 0.00 0.00 40.82 3.25
5126 13231 8.966868 TGAAATTCCATAAAAGGTTCTCATACC 58.033 33.333 0.00 0.00 38.53 2.73
5128 13233 9.753674 ACTGAAATTCCATAAAAGGTTCTCATA 57.246 29.630 0.00 0.00 0.00 2.15
5129 13234 8.655935 ACTGAAATTCCATAAAAGGTTCTCAT 57.344 30.769 0.00 0.00 0.00 2.90
5130 13235 9.010029 GTACTGAAATTCCATAAAAGGTTCTCA 57.990 33.333 0.00 0.00 0.00 3.27
5131 13236 9.232473 AGTACTGAAATTCCATAAAAGGTTCTC 57.768 33.333 0.00 0.00 0.00 2.87
5199 13305 8.891720 GCTTGACTTCTTTCATAAGAATCTGAT 58.108 33.333 1.23 0.00 46.40 2.90
5211 13317 6.866480 AGACAATTTTGCTTGACTTCTTTCA 58.134 32.000 0.00 0.00 28.90 2.69
5212 13318 9.468532 AATAGACAATTTTGCTTGACTTCTTTC 57.531 29.630 0.00 0.00 34.02 2.62
5214 13320 9.899226 GTAATAGACAATTTTGCTTGACTTCTT 57.101 29.630 0.00 0.00 34.02 2.52
5216 13322 9.846248 ATGTAATAGACAATTTTGCTTGACTTC 57.154 29.630 0.00 0.00 42.78 3.01
5343 13449 7.652524 TGCACTCTAATAGAGGATCATATCC 57.347 40.000 20.18 0.00 46.45 2.59
5344 13450 8.075574 CGATGCACTCTAATAGAGGATCATATC 58.924 40.741 20.18 12.91 46.45 1.63
5347 13453 5.394005 GCGATGCACTCTAATAGAGGATCAT 60.394 44.000 20.18 17.57 46.45 2.45
5352 13458 3.005261 ACTGCGATGCACTCTAATAGAGG 59.995 47.826 20.18 10.84 46.45 3.69
5395 13502 8.277197 ACCTCAAGGATCATCAATTAAGATGAA 58.723 33.333 11.31 0.00 46.20 2.57
5400 13507 8.737168 TTACACCTCAAGGATCATCAATTAAG 57.263 34.615 2.30 0.00 38.94 1.85
5401 13508 9.123902 CATTACACCTCAAGGATCATCAATTAA 57.876 33.333 2.30 0.00 38.94 1.40
5408 13515 4.202441 GTGCATTACACCTCAAGGATCAT 58.798 43.478 2.30 0.00 44.02 2.45
5431 13538 6.417635 GGACAATGCAACATAATACCGATTTG 59.582 38.462 0.00 0.00 0.00 2.32
5436 13543 4.497340 GGTGGACAATGCAACATAATACCG 60.497 45.833 0.00 0.00 0.00 4.02
5444 13551 1.992538 TCATGGTGGACAATGCAACA 58.007 45.000 0.00 0.00 40.44 3.33
5454 13561 3.330405 TCTCAAAACTGGATCATGGTGGA 59.670 43.478 0.00 0.00 0.00 4.02
5456 13563 4.582869 TCTCTCAAAACTGGATCATGGTG 58.417 43.478 0.00 0.00 0.00 4.17
5462 13569 7.148171 CCTTGGTTATTCTCTCAAAACTGGATC 60.148 40.741 0.00 0.00 0.00 3.36
5463 13570 6.660949 CCTTGGTTATTCTCTCAAAACTGGAT 59.339 38.462 0.00 0.00 0.00 3.41
5465 13572 5.770162 ACCTTGGTTATTCTCTCAAAACTGG 59.230 40.000 0.00 0.00 0.00 4.00
5468 13575 8.626526 TGTAAACCTTGGTTATTCTCTCAAAAC 58.373 33.333 5.38 0.00 0.00 2.43
5485 13592 7.291416 AGGAACCATACCATTTTTGTAAACCTT 59.709 33.333 0.00 0.00 0.00 3.50
5487 13594 6.999950 AGGAACCATACCATTTTTGTAAACC 58.000 36.000 0.00 0.00 0.00 3.27
5489 13596 9.369672 ACTTAGGAACCATACCATTTTTGTAAA 57.630 29.630 0.00 0.00 0.00 2.01
5491 13598 9.675464 CTACTTAGGAACCATACCATTTTTGTA 57.325 33.333 0.00 0.00 0.00 2.41
5492 13599 7.614192 CCTACTTAGGAACCATACCATTTTTGT 59.386 37.037 0.00 0.00 46.63 2.83
5493 13600 7.996385 CCTACTTAGGAACCATACCATTTTTG 58.004 38.462 0.00 0.00 46.63 2.44
5510 13617 8.637196 TGGAGTGTATATGATGTCCTACTTAG 57.363 38.462 0.00 0.00 0.00 2.18
5512 13619 8.497910 AATGGAGTGTATATGATGTCCTACTT 57.502 34.615 0.00 0.00 0.00 2.24
5513 13620 8.497910 AAATGGAGTGTATATGATGTCCTACT 57.502 34.615 0.00 0.00 0.00 2.57
5522 13629 6.403049 ACGTCACAAAATGGAGTGTATATGA 58.597 36.000 0.00 0.00 37.07 2.15
5524 13631 7.553334 AGTACGTCACAAAATGGAGTGTATAT 58.447 34.615 0.00 0.00 37.07 0.86
5545 13652 4.273724 GCTGGCAGCCTATTAGAAAAGTAC 59.726 45.833 28.87 0.00 34.48 2.73
5548 13655 3.978718 GCTGGCAGCCTATTAGAAAAG 57.021 47.619 28.87 0.00 34.48 2.27
5567 13674 3.068873 TGGTTTAGTTGTTCCATGTTGGC 59.931 43.478 0.00 0.00 37.47 4.52
5570 13677 7.118496 TCATTTGGTTTAGTTGTTCCATGTT 57.882 32.000 0.00 0.00 0.00 2.71
5571 13678 6.723298 TCATTTGGTTTAGTTGTTCCATGT 57.277 33.333 0.00 0.00 0.00 3.21
5575 13682 7.601856 TGATCATCATTTGGTTTAGTTGTTCC 58.398 34.615 0.00 0.00 0.00 3.62
5582 13689 7.816031 GCCCATTATGATCATCATTTGGTTTAG 59.184 37.037 20.22 11.04 38.26 1.85
5604 13711 5.023452 AGACGATCAAGTATATATGGCCCA 58.977 41.667 0.00 0.00 0.00 5.36
5612 14609 5.536538 TCCTTGCTCAGACGATCAAGTATAT 59.463 40.000 0.00 0.00 41.67 0.86
5613 14610 4.887655 TCCTTGCTCAGACGATCAAGTATA 59.112 41.667 0.00 0.00 41.67 1.47
5614 14611 3.701542 TCCTTGCTCAGACGATCAAGTAT 59.298 43.478 0.00 0.00 41.67 2.12
5615 14612 3.089284 TCCTTGCTCAGACGATCAAGTA 58.911 45.455 0.00 0.00 41.67 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.