Multiple sequence alignment - TraesCS5D01G528200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G528200 chr5D 100.000 5158 0 0 1 5158 545192502 545197659 0.000000e+00 9526.0
1 TraesCS5D01G528200 chr6D 99.034 4969 42 5 1 4965 349453 344487 0.000000e+00 8905.0
2 TraesCS5D01G528200 chr6D 100.000 41 0 0 1982 2022 347430 347390 5.540000e-10 76.8
3 TraesCS5D01G528200 chr4D 98.853 4970 51 3 1 4965 400124515 400129483 0.000000e+00 8857.0
4 TraesCS5D01G528200 chr4D 97.980 198 3 1 4962 5158 132907225 132907028 4.950000e-90 342.0
5 TraesCS5D01G528200 chr4D 100.000 41 0 0 1982 2022 400126539 400126579 5.540000e-10 76.8
6 TraesCS5D01G528200 chr3A 97.426 4972 111 12 1 4965 40979705 40974744 0.000000e+00 8456.0
7 TraesCS5D01G528200 chr3A 97.773 2200 45 3 1 2197 500028842 500031040 0.000000e+00 3788.0
8 TraesCS5D01G528200 chr3A 97.160 2007 52 5 2193 4198 500038670 500040672 0.000000e+00 3386.0
9 TraesCS5D01G528200 chr3A 95.775 781 30 3 4187 4965 500052355 500053134 0.000000e+00 1256.0
10 TraesCS5D01G528200 chr1A 96.923 4972 128 11 1 4965 45391404 45396357 0.000000e+00 8311.0
11 TraesCS5D01G528200 chr1A 97.487 199 2 3 4962 5158 590039752 590039949 2.300000e-88 337.0
12 TraesCS5D01G528200 chr1A 100.000 41 0 0 2023 2063 45393377 45393417 5.540000e-10 76.8
13 TraesCS5D01G528200 chr4A 96.130 3669 125 8 1313 4965 507108534 507104867 0.000000e+00 5973.0
14 TraesCS5D01G528200 chr4A 96.085 281 8 1 1 278 507108811 507108531 6.090000e-124 455.0
15 TraesCS5D01G528200 chr4A 96.985 199 4 2 4962 5158 618825743 618825545 2.980000e-87 333.0
16 TraesCS5D01G528200 chrUn 97.696 2952 57 4 1 2948 43102927 43099983 0.000000e+00 5064.0
17 TraesCS5D01G528200 chrUn 95.886 1993 57 5 2976 4965 43099988 43098018 0.000000e+00 3203.0
18 TraesCS5D01G528200 chrUn 100.000 41 0 0 2023 2063 43100949 43100909 5.540000e-10 76.8
19 TraesCS5D01G528200 chr5A 96.046 1214 40 5 3755 4965 491405045 491406253 0.000000e+00 1969.0
20 TraesCS5D01G528200 chr1D 97.425 738 17 1 4230 4965 54558100 54558837 0.000000e+00 1256.0
21 TraesCS5D01G528200 chr5B 98.969 194 2 0 4965 5158 580656133 580655940 1.060000e-91 348.0
22 TraesCS5D01G528200 chr3D 97.980 198 3 1 4962 5158 597323702 597323505 4.950000e-90 342.0
23 TraesCS5D01G528200 chr2B 97.980 198 3 1 4962 5158 141356921 141356724 4.950000e-90 342.0
24 TraesCS5D01G528200 chr2B 97.980 198 3 1 4962 5158 237767765 237767568 4.950000e-90 342.0
25 TraesCS5D01G528200 chr6B 97.938 194 4 0 4965 5158 155860542 155860349 2.300000e-88 337.0
26 TraesCS5D01G528200 chr2D 97.475 198 4 1 4962 5158 330544528 330544331 2.300000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G528200 chr5D 545192502 545197659 5157 False 9526.000000 9526 100.000000 1 5158 1 chr5D.!!$F1 5157
1 TraesCS5D01G528200 chr6D 344487 349453 4966 True 4490.900000 8905 99.517000 1 4965 2 chr6D.!!$R1 4964
2 TraesCS5D01G528200 chr4D 400124515 400129483 4968 False 4466.900000 8857 99.426500 1 4965 2 chr4D.!!$F1 4964
3 TraesCS5D01G528200 chr3A 40974744 40979705 4961 True 8456.000000 8456 97.426000 1 4965 1 chr3A.!!$R1 4964
4 TraesCS5D01G528200 chr3A 500028842 500031040 2198 False 3788.000000 3788 97.773000 1 2197 1 chr3A.!!$F1 2196
5 TraesCS5D01G528200 chr3A 500038670 500040672 2002 False 3386.000000 3386 97.160000 2193 4198 1 chr3A.!!$F2 2005
6 TraesCS5D01G528200 chr3A 500052355 500053134 779 False 1256.000000 1256 95.775000 4187 4965 1 chr3A.!!$F3 778
7 TraesCS5D01G528200 chr1A 45391404 45396357 4953 False 4193.900000 8311 98.461500 1 4965 2 chr1A.!!$F2 4964
8 TraesCS5D01G528200 chr4A 507104867 507108811 3944 True 3214.000000 5973 96.107500 1 4965 2 chr4A.!!$R2 4964
9 TraesCS5D01G528200 chrUn 43098018 43102927 4909 True 2781.266667 5064 97.860667 1 4965 3 chrUn.!!$R1 4964
10 TraesCS5D01G528200 chr5A 491405045 491406253 1208 False 1969.000000 1969 96.046000 3755 4965 1 chr5A.!!$F1 1210
11 TraesCS5D01G528200 chr1D 54558100 54558837 737 False 1256.000000 1256 97.425000 4230 4965 1 chr1D.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 846 2.185387 AGCACGAAGGGGTATGTACTT 58.815 47.619 0.00 0.00 0.00 2.24 F
1419 1426 1.523758 AATCGACAGAAAGTGGTGGC 58.476 50.000 0.00 0.00 0.00 5.01 F
2262 2269 9.914834 GACATATCTCTATACTTGTAGAGGGAT 57.085 37.037 18.13 18.13 45.01 3.85 F
2868 2875 4.263905 TGAGGTTAGGCAATCAATGAGGTT 60.264 41.667 0.00 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2269 1.645710 GTTCCTTCCCAGTCTCCTCA 58.354 55.000 0.00 0.00 0.00 3.86 R
2868 2875 3.459227 TCCCAATATCTGCTCAACATCCA 59.541 43.478 0.00 0.00 0.00 3.41 R
3583 3590 1.490069 TGGCATGTAATCTGCAGGCTA 59.510 47.619 15.13 2.05 42.42 3.93 R
4435 4457 5.107065 GCACCATCTACAAGTACAGAACAAC 60.107 44.000 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
757 761 4.190001 ACACTTTGTGAAAATGCATGCAA 58.810 34.783 26.68 4.34 36.96 4.08
842 846 2.185387 AGCACGAAGGGGTATGTACTT 58.815 47.619 0.00 0.00 0.00 2.24
1007 1012 5.310409 ACATTTGTAGCTAGCATGGGTAT 57.690 39.130 18.83 0.00 30.64 2.73
1286 1293 2.045438 TCCAATTGGCCGTCGCAT 60.045 55.556 20.33 0.00 36.38 4.73
1419 1426 1.523758 AATCGACAGAAAGTGGTGGC 58.476 50.000 0.00 0.00 0.00 5.01
2262 2269 9.914834 GACATATCTCTATACTTGTAGAGGGAT 57.085 37.037 18.13 18.13 45.01 3.85
2868 2875 4.263905 TGAGGTTAGGCAATCAATGAGGTT 60.264 41.667 0.00 0.00 0.00 3.50
3583 3590 4.315803 GTGCAATAGCCTATACGTGGAAT 58.684 43.478 0.00 0.00 41.13 3.01
4435 4457 5.049828 TCTACCATTATCAACATGTGAGCG 58.950 41.667 0.00 0.00 40.43 5.03
4480 4502 7.040478 TGGTGCTTGGATAATGCATTATTAGTC 60.040 37.037 28.16 18.17 39.00 2.59
4528 4550 2.040545 TCACCATGGAATTACACCCGTT 59.959 45.455 21.47 0.00 0.00 4.44
4965 5031 4.622220 GCAATAGACCGTTTTCCCTGTAGA 60.622 45.833 0.00 0.00 0.00 2.59
4966 5032 5.484715 CAATAGACCGTTTTCCCTGTAGAA 58.515 41.667 0.00 0.00 0.00 2.10
4967 5033 3.397849 AGACCGTTTTCCCTGTAGAAC 57.602 47.619 0.00 0.00 0.00 3.01
4968 5034 2.970640 AGACCGTTTTCCCTGTAGAACT 59.029 45.455 0.00 0.00 0.00 3.01
4969 5035 4.154942 AGACCGTTTTCCCTGTAGAACTA 58.845 43.478 0.00 0.00 0.00 2.24
4970 5036 4.776308 AGACCGTTTTCCCTGTAGAACTAT 59.224 41.667 0.00 0.00 0.00 2.12
4971 5037 4.828829 ACCGTTTTCCCTGTAGAACTATG 58.171 43.478 0.00 0.00 0.00 2.23
4972 5038 4.189231 CCGTTTTCCCTGTAGAACTATGG 58.811 47.826 0.00 0.00 0.00 2.74
4973 5039 4.323257 CCGTTTTCCCTGTAGAACTATGGT 60.323 45.833 0.00 0.00 0.00 3.55
4974 5040 5.243207 CGTTTTCCCTGTAGAACTATGGTT 58.757 41.667 0.00 0.00 38.52 3.67
4975 5041 5.704053 CGTTTTCCCTGTAGAACTATGGTTT 59.296 40.000 0.00 0.00 35.58 3.27
4976 5042 6.875195 CGTTTTCCCTGTAGAACTATGGTTTA 59.125 38.462 0.00 0.00 35.58 2.01
4977 5043 7.064253 CGTTTTCCCTGTAGAACTATGGTTTAG 59.936 40.741 0.00 0.00 35.58 1.85
4978 5044 7.801893 TTTCCCTGTAGAACTATGGTTTAGA 57.198 36.000 0.00 0.00 35.58 2.10
4979 5045 7.419711 TTCCCTGTAGAACTATGGTTTAGAG 57.580 40.000 0.00 0.00 35.58 2.43
4980 5046 6.738635 TCCCTGTAGAACTATGGTTTAGAGA 58.261 40.000 0.00 0.00 35.58 3.10
4981 5047 7.186972 TCCCTGTAGAACTATGGTTTAGAGAA 58.813 38.462 0.00 0.00 35.58 2.87
4982 5048 7.676893 TCCCTGTAGAACTATGGTTTAGAGAAA 59.323 37.037 0.00 0.00 35.58 2.52
4983 5049 7.764901 CCCTGTAGAACTATGGTTTAGAGAAAC 59.235 40.741 0.00 0.00 43.65 2.78
4995 5061 5.536260 GTTTAGAGAAACCTAAGGTGTCGT 58.464 41.667 0.00 0.00 44.27 4.34
4996 5062 5.796424 TTAGAGAAACCTAAGGTGTCGTT 57.204 39.130 0.00 0.00 44.27 3.85
4997 5063 4.684484 AGAGAAACCTAAGGTGTCGTTT 57.316 40.909 0.00 0.00 44.27 3.60
4998 5064 4.629092 AGAGAAACCTAAGGTGTCGTTTC 58.371 43.478 0.00 0.00 44.27 2.78
4999 5065 4.684484 AGAAACCTAAGGTGTCGTTTCT 57.316 40.909 7.94 7.94 44.27 2.52
5002 5068 6.849588 GAAACCTAAGGTGTCGTTTCTTAA 57.150 37.500 0.00 0.00 40.45 1.85
5003 5069 7.250445 GAAACCTAAGGTGTCGTTTCTTAAA 57.750 36.000 0.00 0.00 40.45 1.52
5004 5070 7.628769 AAACCTAAGGTGTCGTTTCTTAAAA 57.371 32.000 0.00 0.00 35.34 1.52
5005 5071 6.856135 ACCTAAGGTGTCGTTTCTTAAAAG 57.144 37.500 0.00 0.00 32.98 2.27
5006 5072 6.351711 ACCTAAGGTGTCGTTTCTTAAAAGT 58.648 36.000 0.00 0.00 32.98 2.66
5007 5073 6.825213 ACCTAAGGTGTCGTTTCTTAAAAGTT 59.175 34.615 0.00 0.00 32.98 2.66
5008 5074 7.337689 ACCTAAGGTGTCGTTTCTTAAAAGTTT 59.662 33.333 0.00 0.00 32.98 2.66
5009 5075 7.642586 CCTAAGGTGTCGTTTCTTAAAAGTTTG 59.357 37.037 0.00 0.00 0.00 2.93
5010 5076 5.886992 AGGTGTCGTTTCTTAAAAGTTTGG 58.113 37.500 0.00 0.00 0.00 3.28
5011 5077 5.038683 GGTGTCGTTTCTTAAAAGTTTGGG 58.961 41.667 0.00 0.00 0.00 4.12
5012 5078 5.038683 GTGTCGTTTCTTAAAAGTTTGGGG 58.961 41.667 0.00 0.00 0.00 4.96
5013 5079 4.046462 GTCGTTTCTTAAAAGTTTGGGGC 58.954 43.478 0.00 0.00 0.00 5.80
5014 5080 3.955551 TCGTTTCTTAAAAGTTTGGGGCT 59.044 39.130 0.00 0.00 0.00 5.19
5015 5081 4.048504 CGTTTCTTAAAAGTTTGGGGCTG 58.951 43.478 0.00 0.00 0.00 4.85
5016 5082 3.744238 TTCTTAAAAGTTTGGGGCTGC 57.256 42.857 0.00 0.00 0.00 5.25
5017 5083 1.611491 TCTTAAAAGTTTGGGGCTGCG 59.389 47.619 0.00 0.00 0.00 5.18
5018 5084 1.611491 CTTAAAAGTTTGGGGCTGCGA 59.389 47.619 0.00 0.00 0.00 5.10
5019 5085 0.955905 TAAAAGTTTGGGGCTGCGAC 59.044 50.000 0.00 0.00 0.00 5.19
5020 5086 2.070654 AAAAGTTTGGGGCTGCGACG 62.071 55.000 0.00 0.00 0.00 5.12
5023 5089 4.947147 TTTGGGGCTGCGACGCTT 62.947 61.111 22.08 0.00 0.00 4.68
5024 5090 3.538785 TTTGGGGCTGCGACGCTTA 62.539 57.895 22.08 0.00 0.00 3.09
5025 5091 2.813226 TTTGGGGCTGCGACGCTTAT 62.813 55.000 22.08 0.00 0.00 1.73
5026 5092 3.272334 GGGGCTGCGACGCTTATG 61.272 66.667 22.08 9.56 0.00 1.90
5027 5093 2.511600 GGGCTGCGACGCTTATGT 60.512 61.111 22.08 0.00 0.00 2.29
5028 5094 2.703409 GGCTGCGACGCTTATGTG 59.297 61.111 22.08 5.42 0.00 3.21
5029 5095 1.809619 GGCTGCGACGCTTATGTGA 60.810 57.895 22.08 0.00 0.00 3.58
5030 5096 1.358725 GGCTGCGACGCTTATGTGAA 61.359 55.000 22.08 0.00 0.00 3.18
5031 5097 0.442310 GCTGCGACGCTTATGTGAAA 59.558 50.000 22.08 0.00 0.00 2.69
5032 5098 1.136085 GCTGCGACGCTTATGTGAAAA 60.136 47.619 22.08 0.00 0.00 2.29
5033 5099 2.664424 GCTGCGACGCTTATGTGAAAAA 60.664 45.455 22.08 0.00 0.00 1.94
5034 5100 3.155998 CTGCGACGCTTATGTGAAAAAG 58.844 45.455 22.08 0.97 0.00 2.27
5035 5101 2.546368 TGCGACGCTTATGTGAAAAAGT 59.454 40.909 22.08 0.00 0.00 2.66
5036 5102 3.002862 TGCGACGCTTATGTGAAAAAGTT 59.997 39.130 22.08 0.00 0.00 2.66
5037 5103 3.972502 GCGACGCTTATGTGAAAAAGTTT 59.027 39.130 13.73 0.00 0.00 2.66
5038 5104 4.086664 GCGACGCTTATGTGAAAAAGTTTC 59.913 41.667 13.73 0.00 0.00 2.78
5039 5105 5.201910 CGACGCTTATGTGAAAAAGTTTCA 58.798 37.500 0.00 0.00 0.00 2.69
5040 5106 5.336990 CGACGCTTATGTGAAAAAGTTTCAG 59.663 40.000 3.71 0.00 0.00 3.02
5041 5107 5.519722 ACGCTTATGTGAAAAAGTTTCAGG 58.480 37.500 3.71 0.00 0.00 3.86
5042 5108 4.382754 CGCTTATGTGAAAAAGTTTCAGGC 59.617 41.667 3.71 4.01 0.00 4.85
5043 5109 5.532557 GCTTATGTGAAAAAGTTTCAGGCT 58.467 37.500 3.71 0.00 0.00 4.58
5044 5110 5.403466 GCTTATGTGAAAAAGTTTCAGGCTG 59.597 40.000 8.58 8.58 0.00 4.85
5045 5111 6.707440 TTATGTGAAAAAGTTTCAGGCTGA 57.293 33.333 14.43 14.43 0.00 4.26
5046 5112 5.796424 ATGTGAAAAAGTTTCAGGCTGAT 57.204 34.783 19.50 0.24 0.00 2.90
5047 5113 6.899393 ATGTGAAAAAGTTTCAGGCTGATA 57.101 33.333 19.50 11.19 0.00 2.15
5048 5114 6.707440 TGTGAAAAAGTTTCAGGCTGATAA 57.293 33.333 19.50 12.41 0.00 1.75
5049 5115 6.738114 TGTGAAAAAGTTTCAGGCTGATAAG 58.262 36.000 19.50 0.00 0.00 1.73
5050 5116 5.631096 GTGAAAAAGTTTCAGGCTGATAAGC 59.369 40.000 19.50 6.48 0.00 3.09
5051 5117 5.536161 TGAAAAAGTTTCAGGCTGATAAGCT 59.464 36.000 19.50 8.92 34.73 3.74
5052 5118 5.635417 AAAAGTTTCAGGCTGATAAGCTC 57.365 39.130 19.50 1.62 34.73 4.09
5053 5119 2.898705 AGTTTCAGGCTGATAAGCTCG 58.101 47.619 19.50 0.00 34.73 5.03
5054 5120 2.497675 AGTTTCAGGCTGATAAGCTCGA 59.502 45.455 19.50 0.00 34.73 4.04
5055 5121 3.055819 AGTTTCAGGCTGATAAGCTCGAA 60.056 43.478 19.50 3.83 34.73 3.71
5056 5122 2.586258 TCAGGCTGATAAGCTCGAAC 57.414 50.000 14.43 0.00 34.73 3.95
5057 5123 1.137086 TCAGGCTGATAAGCTCGAACC 59.863 52.381 14.43 0.00 34.73 3.62
5058 5124 0.466124 AGGCTGATAAGCTCGAACCC 59.534 55.000 1.00 0.00 34.73 4.11
5059 5125 0.178068 GGCTGATAAGCTCGAACCCA 59.822 55.000 1.00 0.00 34.73 4.51
5060 5126 1.406887 GGCTGATAAGCTCGAACCCAA 60.407 52.381 1.00 0.00 34.73 4.12
5061 5127 2.356135 GCTGATAAGCTCGAACCCAAA 58.644 47.619 0.00 0.00 0.00 3.28
5062 5128 2.352960 GCTGATAAGCTCGAACCCAAAG 59.647 50.000 0.00 0.00 0.00 2.77
5063 5129 2.352960 CTGATAAGCTCGAACCCAAAGC 59.647 50.000 0.00 0.00 36.27 3.51
5064 5130 1.327764 GATAAGCTCGAACCCAAAGCG 59.672 52.381 0.00 0.00 40.95 4.68
5065 5131 0.672401 TAAGCTCGAACCCAAAGCGG 60.672 55.000 0.00 0.00 40.95 5.52
5066 5132 2.358247 GCTCGAACCCAAAGCGGA 60.358 61.111 0.00 0.00 36.56 5.54
5067 5133 1.745489 GCTCGAACCCAAAGCGGAT 60.745 57.895 0.00 0.00 36.56 4.18
5068 5134 0.461339 GCTCGAACCCAAAGCGGATA 60.461 55.000 0.00 0.00 36.56 2.59
5069 5135 2.010043 GCTCGAACCCAAAGCGGATAA 61.010 52.381 0.00 0.00 36.56 1.75
5070 5136 2.352388 CTCGAACCCAAAGCGGATAAA 58.648 47.619 0.00 0.00 36.56 1.40
5071 5137 2.943033 CTCGAACCCAAAGCGGATAAAT 59.057 45.455 0.00 0.00 36.56 1.40
5072 5138 2.680841 TCGAACCCAAAGCGGATAAATG 59.319 45.455 0.00 0.00 36.56 2.32
5073 5139 2.794631 CGAACCCAAAGCGGATAAATGC 60.795 50.000 0.00 0.00 36.56 3.56
5074 5140 1.846007 ACCCAAAGCGGATAAATGCA 58.154 45.000 0.00 0.00 36.56 3.96
5075 5141 2.387757 ACCCAAAGCGGATAAATGCAT 58.612 42.857 0.00 0.00 36.56 3.96
5076 5142 2.362077 ACCCAAAGCGGATAAATGCATC 59.638 45.455 0.00 0.00 36.56 3.91
5077 5143 2.624838 CCCAAAGCGGATAAATGCATCT 59.375 45.455 0.00 0.00 36.56 2.90
5078 5144 3.068590 CCCAAAGCGGATAAATGCATCTT 59.931 43.478 0.00 0.00 36.56 2.40
5079 5145 4.293415 CCAAAGCGGATAAATGCATCTTC 58.707 43.478 0.00 0.00 36.56 2.87
5080 5146 4.202040 CCAAAGCGGATAAATGCATCTTCA 60.202 41.667 0.00 0.00 36.56 3.02
5081 5147 5.508489 CCAAAGCGGATAAATGCATCTTCAT 60.508 40.000 0.00 0.00 36.56 2.57
5082 5148 6.294120 CCAAAGCGGATAAATGCATCTTCATA 60.294 38.462 0.00 0.00 36.56 2.15
5083 5149 6.492007 AAGCGGATAAATGCATCTTCATAG 57.508 37.500 0.00 0.00 0.00 2.23
5084 5150 4.940046 AGCGGATAAATGCATCTTCATAGG 59.060 41.667 0.00 0.00 0.00 2.57
5085 5151 4.937620 GCGGATAAATGCATCTTCATAGGA 59.062 41.667 0.00 0.00 0.00 2.94
5086 5152 5.163814 GCGGATAAATGCATCTTCATAGGAC 60.164 44.000 0.00 0.00 0.00 3.85
5087 5153 5.934043 CGGATAAATGCATCTTCATAGGACA 59.066 40.000 0.00 0.00 0.00 4.02
5088 5154 6.128445 CGGATAAATGCATCTTCATAGGACAC 60.128 42.308 0.00 0.00 0.00 3.67
5089 5155 6.150140 GGATAAATGCATCTTCATAGGACACC 59.850 42.308 0.00 0.00 0.00 4.16
5090 5156 3.498774 ATGCATCTTCATAGGACACCC 57.501 47.619 0.00 0.00 0.00 4.61
5091 5157 2.195727 TGCATCTTCATAGGACACCCA 58.804 47.619 0.00 0.00 33.88 4.51
5092 5158 2.575735 TGCATCTTCATAGGACACCCAA 59.424 45.455 0.00 0.00 33.88 4.12
5093 5159 3.010027 TGCATCTTCATAGGACACCCAAA 59.990 43.478 0.00 0.00 33.88 3.28
5094 5160 4.016444 GCATCTTCATAGGACACCCAAAA 58.984 43.478 0.00 0.00 33.88 2.44
5095 5161 4.462483 GCATCTTCATAGGACACCCAAAAA 59.538 41.667 0.00 0.00 33.88 1.94
5096 5162 5.622233 GCATCTTCATAGGACACCCAAAAAC 60.622 44.000 0.00 0.00 33.88 2.43
5097 5163 5.055265 TCTTCATAGGACACCCAAAAACA 57.945 39.130 0.00 0.00 33.88 2.83
5098 5164 5.450453 TCTTCATAGGACACCCAAAAACAA 58.550 37.500 0.00 0.00 33.88 2.83
5099 5165 6.074648 TCTTCATAGGACACCCAAAAACAAT 58.925 36.000 0.00 0.00 33.88 2.71
5100 5166 6.553100 TCTTCATAGGACACCCAAAAACAATT 59.447 34.615 0.00 0.00 33.88 2.32
5101 5167 6.095432 TCATAGGACACCCAAAAACAATTG 57.905 37.500 3.24 3.24 33.88 2.32
5112 5178 5.972935 CCAAAAACAATTGGGTATACCTCC 58.027 41.667 21.25 6.54 45.03 4.30
5113 5179 5.719563 CCAAAAACAATTGGGTATACCTCCT 59.280 40.000 21.25 3.57 45.03 3.69
5114 5180 6.350949 CCAAAAACAATTGGGTATACCTCCTG 60.351 42.308 21.25 14.85 45.03 3.86
5115 5181 5.530176 AAACAATTGGGTATACCTCCTGT 57.470 39.130 21.25 15.42 41.11 4.00
5116 5182 4.772886 ACAATTGGGTATACCTCCTGTC 57.227 45.455 21.25 4.35 41.11 3.51
5117 5183 4.371681 ACAATTGGGTATACCTCCTGTCT 58.628 43.478 21.25 0.00 41.11 3.41
5118 5184 4.409247 ACAATTGGGTATACCTCCTGTCTC 59.591 45.833 21.25 2.90 41.11 3.36
5119 5185 3.769189 TTGGGTATACCTCCTGTCTCA 57.231 47.619 21.25 5.56 41.11 3.27
5120 5186 3.314307 TGGGTATACCTCCTGTCTCAG 57.686 52.381 21.25 0.00 41.11 3.35
5121 5187 2.856864 TGGGTATACCTCCTGTCTCAGA 59.143 50.000 21.25 0.00 41.11 3.27
5122 5188 3.467483 TGGGTATACCTCCTGTCTCAGAT 59.533 47.826 21.25 0.00 41.11 2.90
5123 5189 4.083565 GGGTATACCTCCTGTCTCAGATC 58.916 52.174 21.25 0.00 35.85 2.75
5124 5190 4.083565 GGTATACCTCCTGTCTCAGATCC 58.916 52.174 15.09 0.00 32.44 3.36
5125 5191 2.350057 TACCTCCTGTCTCAGATCCG 57.650 55.000 0.00 0.00 32.44 4.18
5126 5192 0.396417 ACCTCCTGTCTCAGATCCGG 60.396 60.000 0.00 0.00 32.44 5.14
5127 5193 0.106469 CCTCCTGTCTCAGATCCGGA 60.106 60.000 6.61 6.61 32.44 5.14
5128 5194 1.686428 CCTCCTGTCTCAGATCCGGAA 60.686 57.143 9.01 0.00 32.44 4.30
5129 5195 1.680735 CTCCTGTCTCAGATCCGGAAG 59.319 57.143 9.01 0.06 32.44 3.46
5130 5196 0.103937 CCTGTCTCAGATCCGGAAGC 59.896 60.000 9.01 3.41 32.44 3.86
5131 5197 0.820226 CTGTCTCAGATCCGGAAGCA 59.180 55.000 9.01 3.16 32.44 3.91
5132 5198 1.205655 CTGTCTCAGATCCGGAAGCAA 59.794 52.381 9.01 0.00 32.44 3.91
5133 5199 1.623311 TGTCTCAGATCCGGAAGCAAA 59.377 47.619 9.01 0.00 0.00 3.68
5134 5200 2.038426 TGTCTCAGATCCGGAAGCAAAA 59.962 45.455 9.01 0.00 0.00 2.44
5135 5201 2.675348 GTCTCAGATCCGGAAGCAAAAG 59.325 50.000 9.01 1.67 0.00 2.27
5136 5202 2.012673 CTCAGATCCGGAAGCAAAAGG 58.987 52.381 9.01 0.00 0.00 3.11
5137 5203 1.098050 CAGATCCGGAAGCAAAAGGG 58.902 55.000 9.01 0.00 0.00 3.95
5138 5204 0.991920 AGATCCGGAAGCAAAAGGGA 59.008 50.000 9.01 0.00 0.00 4.20
5139 5205 1.566231 AGATCCGGAAGCAAAAGGGAT 59.434 47.619 9.01 0.00 40.10 3.85
5140 5206 2.024941 AGATCCGGAAGCAAAAGGGATT 60.025 45.455 9.01 0.00 37.61 3.01
5141 5207 1.544724 TCCGGAAGCAAAAGGGATTG 58.455 50.000 0.00 0.00 0.00 2.67
5142 5208 1.203001 TCCGGAAGCAAAAGGGATTGT 60.203 47.619 0.00 0.00 32.80 2.71
5143 5209 1.618343 CCGGAAGCAAAAGGGATTGTT 59.382 47.619 0.00 0.00 32.80 2.83
5144 5210 2.037121 CCGGAAGCAAAAGGGATTGTTT 59.963 45.455 0.00 0.00 36.59 2.83
5145 5211 3.317150 CGGAAGCAAAAGGGATTGTTTC 58.683 45.455 7.74 7.74 44.74 2.78
5146 5212 3.005791 CGGAAGCAAAAGGGATTGTTTCT 59.994 43.478 13.64 0.00 44.80 2.52
5147 5213 4.217550 CGGAAGCAAAAGGGATTGTTTCTA 59.782 41.667 13.64 0.00 44.80 2.10
5148 5214 5.619981 CGGAAGCAAAAGGGATTGTTTCTAG 60.620 44.000 13.64 7.14 44.80 2.43
5149 5215 5.476945 GGAAGCAAAAGGGATTGTTTCTAGA 59.523 40.000 13.64 0.00 44.80 2.43
5150 5216 6.015434 GGAAGCAAAAGGGATTGTTTCTAGAA 60.015 38.462 0.00 0.00 44.80 2.10
5151 5217 7.310052 GGAAGCAAAAGGGATTGTTTCTAGAAT 60.310 37.037 5.89 0.00 44.80 2.40
5152 5218 7.163001 AGCAAAAGGGATTGTTTCTAGAATC 57.837 36.000 5.89 6.30 34.24 2.52
5153 5219 6.030228 GCAAAAGGGATTGTTTCTAGAATCG 58.970 40.000 5.89 0.00 35.46 3.34
5154 5220 6.555315 CAAAAGGGATTGTTTCTAGAATCGG 58.445 40.000 5.89 0.00 35.46 4.18
5155 5221 4.423625 AGGGATTGTTTCTAGAATCGGG 57.576 45.455 5.89 0.00 35.46 5.14
5156 5222 3.780850 AGGGATTGTTTCTAGAATCGGGT 59.219 43.478 5.89 0.00 35.46 5.28
5157 5223 4.127907 GGGATTGTTTCTAGAATCGGGTC 58.872 47.826 5.89 5.31 35.46 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1286 1293 2.505337 GTACGATGTCGGCGTGCA 60.505 61.111 6.85 8.14 42.58 4.57
1419 1426 1.168714 CTCGCCCCTTCTTCTTTTGG 58.831 55.000 0.00 0.00 0.00 3.28
2262 2269 1.645710 GTTCCTTCCCAGTCTCCTCA 58.354 55.000 0.00 0.00 0.00 3.86
2868 2875 3.459227 TCCCAATATCTGCTCAACATCCA 59.541 43.478 0.00 0.00 0.00 3.41
3583 3590 1.490069 TGGCATGTAATCTGCAGGCTA 59.510 47.619 15.13 2.05 42.42 3.93
4373 4395 7.172868 ACATGTCCAAAGCATTCATTCATTA 57.827 32.000 0.00 0.00 0.00 1.90
4435 4457 5.107065 GCACCATCTACAAGTACAGAACAAC 60.107 44.000 0.00 0.00 0.00 3.32
4760 4784 8.682128 TTTTTCTCGTGGCATTTGAATTATAC 57.318 30.769 0.00 0.00 0.00 1.47
4972 5038 5.536260 ACGACACCTTAGGTTTCTCTAAAC 58.464 41.667 14.66 0.00 43.58 2.01
4973 5039 5.796424 ACGACACCTTAGGTTTCTCTAAA 57.204 39.130 14.66 0.00 30.90 1.85
4974 5040 5.796424 AACGACACCTTAGGTTTCTCTAA 57.204 39.130 14.66 0.00 30.90 2.10
4975 5041 5.776744 GAAACGACACCTTAGGTTTCTCTA 58.223 41.667 14.66 0.00 42.90 2.43
4976 5042 4.629092 GAAACGACACCTTAGGTTTCTCT 58.371 43.478 14.66 0.10 42.90 3.10
4977 5043 4.986875 GAAACGACACCTTAGGTTTCTC 57.013 45.455 14.66 3.31 42.90 2.87
4979 5045 6.849588 TTAAGAAACGACACCTTAGGTTTC 57.150 37.500 0.00 3.99 45.22 2.78
4980 5046 7.337689 ACTTTTAAGAAACGACACCTTAGGTTT 59.662 33.333 0.00 0.00 31.02 3.27
4981 5047 6.825213 ACTTTTAAGAAACGACACCTTAGGTT 59.175 34.615 0.00 0.00 31.02 3.50
4982 5048 6.351711 ACTTTTAAGAAACGACACCTTAGGT 58.648 36.000 0.00 0.00 35.62 3.08
4983 5049 6.856135 ACTTTTAAGAAACGACACCTTAGG 57.144 37.500 0.00 0.00 0.00 2.69
4984 5050 7.642586 CCAAACTTTTAAGAAACGACACCTTAG 59.357 37.037 0.00 0.00 0.00 2.18
4985 5051 7.415429 CCCAAACTTTTAAGAAACGACACCTTA 60.415 37.037 0.00 0.00 0.00 2.69
4986 5052 6.327154 CCAAACTTTTAAGAAACGACACCTT 58.673 36.000 0.00 0.00 0.00 3.50
4987 5053 5.163591 CCCAAACTTTTAAGAAACGACACCT 60.164 40.000 0.00 0.00 0.00 4.00
4988 5054 5.038683 CCCAAACTTTTAAGAAACGACACC 58.961 41.667 0.00 0.00 0.00 4.16
4989 5055 5.038683 CCCCAAACTTTTAAGAAACGACAC 58.961 41.667 0.00 0.00 0.00 3.67
4990 5056 4.440387 GCCCCAAACTTTTAAGAAACGACA 60.440 41.667 0.00 0.00 0.00 4.35
4991 5057 4.046462 GCCCCAAACTTTTAAGAAACGAC 58.954 43.478 0.00 0.00 0.00 4.34
4992 5058 3.955551 AGCCCCAAACTTTTAAGAAACGA 59.044 39.130 0.00 0.00 0.00 3.85
4993 5059 4.048504 CAGCCCCAAACTTTTAAGAAACG 58.951 43.478 0.00 0.00 0.00 3.60
4994 5060 3.807622 GCAGCCCCAAACTTTTAAGAAAC 59.192 43.478 0.00 0.00 0.00 2.78
4995 5061 3.491792 CGCAGCCCCAAACTTTTAAGAAA 60.492 43.478 0.00 0.00 0.00 2.52
4996 5062 2.035321 CGCAGCCCCAAACTTTTAAGAA 59.965 45.455 0.00 0.00 0.00 2.52
4997 5063 1.611491 CGCAGCCCCAAACTTTTAAGA 59.389 47.619 0.00 0.00 0.00 2.10
4998 5064 1.611491 TCGCAGCCCCAAACTTTTAAG 59.389 47.619 0.00 0.00 0.00 1.85
4999 5065 1.338655 GTCGCAGCCCCAAACTTTTAA 59.661 47.619 0.00 0.00 0.00 1.52
5000 5066 0.955905 GTCGCAGCCCCAAACTTTTA 59.044 50.000 0.00 0.00 0.00 1.52
5001 5067 1.739667 GTCGCAGCCCCAAACTTTT 59.260 52.632 0.00 0.00 0.00 2.27
5002 5068 2.551912 CGTCGCAGCCCCAAACTTT 61.552 57.895 0.00 0.00 0.00 2.66
5003 5069 2.978010 CGTCGCAGCCCCAAACTT 60.978 61.111 0.00 0.00 0.00 2.66
5006 5072 2.813226 ATAAGCGTCGCAGCCCCAAA 62.813 55.000 21.09 0.00 38.01 3.28
5007 5073 3.323758 ATAAGCGTCGCAGCCCCAA 62.324 57.895 21.09 0.00 38.01 4.12
5008 5074 3.781307 ATAAGCGTCGCAGCCCCA 61.781 61.111 21.09 0.00 38.01 4.96
5009 5075 3.272334 CATAAGCGTCGCAGCCCC 61.272 66.667 21.09 0.00 38.01 5.80
5010 5076 2.511600 ACATAAGCGTCGCAGCCC 60.512 61.111 21.09 0.00 38.01 5.19
5011 5077 1.358725 TTCACATAAGCGTCGCAGCC 61.359 55.000 21.09 0.00 38.01 4.85
5012 5078 0.442310 TTTCACATAAGCGTCGCAGC 59.558 50.000 21.09 0.00 37.41 5.25
5013 5079 2.873170 TTTTCACATAAGCGTCGCAG 57.127 45.000 21.09 8.63 0.00 5.18
5014 5080 2.546368 ACTTTTTCACATAAGCGTCGCA 59.454 40.909 21.09 0.00 0.00 5.10
5015 5081 3.183237 ACTTTTTCACATAAGCGTCGC 57.817 42.857 9.80 9.80 0.00 5.19
5016 5082 5.201910 TGAAACTTTTTCACATAAGCGTCG 58.798 37.500 0.00 0.00 0.00 5.12
5017 5083 5.625311 CCTGAAACTTTTTCACATAAGCGTC 59.375 40.000 0.00 0.00 0.00 5.19
5018 5084 5.519722 CCTGAAACTTTTTCACATAAGCGT 58.480 37.500 0.00 0.00 0.00 5.07
5019 5085 4.382754 GCCTGAAACTTTTTCACATAAGCG 59.617 41.667 0.00 0.00 0.00 4.68
5020 5086 5.403466 CAGCCTGAAACTTTTTCACATAAGC 59.597 40.000 0.00 0.00 0.00 3.09
5021 5087 6.738114 TCAGCCTGAAACTTTTTCACATAAG 58.262 36.000 0.00 0.00 0.00 1.73
5022 5088 6.707440 TCAGCCTGAAACTTTTTCACATAA 57.293 33.333 0.00 0.00 0.00 1.90
5023 5089 6.899393 ATCAGCCTGAAACTTTTTCACATA 57.101 33.333 0.00 0.00 0.00 2.29
5024 5090 5.796424 ATCAGCCTGAAACTTTTTCACAT 57.204 34.783 0.00 0.00 0.00 3.21
5025 5091 6.707440 TTATCAGCCTGAAACTTTTTCACA 57.293 33.333 0.00 0.00 0.00 3.58
5026 5092 5.631096 GCTTATCAGCCTGAAACTTTTTCAC 59.369 40.000 0.00 0.00 40.61 3.18
5027 5093 5.772521 GCTTATCAGCCTGAAACTTTTTCA 58.227 37.500 0.00 1.60 40.61 2.69
5042 5108 2.352960 GCTTTGGGTTCGAGCTTATCAG 59.647 50.000 0.00 0.00 33.72 2.90
5043 5109 2.356135 GCTTTGGGTTCGAGCTTATCA 58.644 47.619 0.00 0.00 33.72 2.15
5044 5110 1.327764 CGCTTTGGGTTCGAGCTTATC 59.672 52.381 0.00 0.00 34.33 1.75
5045 5111 1.369625 CGCTTTGGGTTCGAGCTTAT 58.630 50.000 0.00 0.00 34.33 1.73
5046 5112 0.672401 CCGCTTTGGGTTCGAGCTTA 60.672 55.000 0.00 0.00 34.33 3.09
5047 5113 1.966451 CCGCTTTGGGTTCGAGCTT 60.966 57.895 0.00 0.00 34.33 3.74
5048 5114 2.185310 ATCCGCTTTGGGTTCGAGCT 62.185 55.000 0.00 0.00 38.76 4.09
5049 5115 0.461339 TATCCGCTTTGGGTTCGAGC 60.461 55.000 0.00 0.00 38.76 5.03
5050 5116 2.018542 TTATCCGCTTTGGGTTCGAG 57.981 50.000 0.00 0.00 38.76 4.04
5051 5117 2.476126 TTTATCCGCTTTGGGTTCGA 57.524 45.000 0.00 0.00 38.76 3.71
5052 5118 2.794631 GCATTTATCCGCTTTGGGTTCG 60.795 50.000 0.00 0.00 38.76 3.95
5053 5119 2.165437 TGCATTTATCCGCTTTGGGTTC 59.835 45.455 0.00 0.00 38.76 3.62
5054 5120 2.175202 TGCATTTATCCGCTTTGGGTT 58.825 42.857 0.00 0.00 38.76 4.11
5055 5121 1.846007 TGCATTTATCCGCTTTGGGT 58.154 45.000 0.00 0.00 38.76 4.51
5056 5122 2.624838 AGATGCATTTATCCGCTTTGGG 59.375 45.455 0.00 0.00 38.76 4.12
5057 5123 3.996150 AGATGCATTTATCCGCTTTGG 57.004 42.857 0.00 0.00 40.09 3.28
5058 5124 4.923893 TGAAGATGCATTTATCCGCTTTG 58.076 39.130 0.00 0.00 0.00 2.77
5059 5125 5.779529 ATGAAGATGCATTTATCCGCTTT 57.220 34.783 0.00 0.00 0.00 3.51
5060 5126 5.413833 CCTATGAAGATGCATTTATCCGCTT 59.586 40.000 0.00 0.00 0.00 4.68
5061 5127 4.940046 CCTATGAAGATGCATTTATCCGCT 59.060 41.667 0.00 0.00 0.00 5.52
5062 5128 4.937620 TCCTATGAAGATGCATTTATCCGC 59.062 41.667 0.00 0.00 0.00 5.54
5063 5129 5.934043 TGTCCTATGAAGATGCATTTATCCG 59.066 40.000 0.00 0.00 0.00 4.18
5064 5130 6.150140 GGTGTCCTATGAAGATGCATTTATCC 59.850 42.308 0.00 0.00 0.00 2.59
5065 5131 6.150140 GGGTGTCCTATGAAGATGCATTTATC 59.850 42.308 0.00 0.28 0.00 1.75
5066 5132 6.006449 GGGTGTCCTATGAAGATGCATTTAT 58.994 40.000 0.00 0.00 0.00 1.40
5067 5133 5.104151 TGGGTGTCCTATGAAGATGCATTTA 60.104 40.000 0.00 0.00 0.00 1.40
5068 5134 4.210331 GGGTGTCCTATGAAGATGCATTT 58.790 43.478 0.00 0.00 0.00 2.32
5069 5135 3.202818 TGGGTGTCCTATGAAGATGCATT 59.797 43.478 0.00 0.00 0.00 3.56
5070 5136 2.779430 TGGGTGTCCTATGAAGATGCAT 59.221 45.455 0.00 0.00 0.00 3.96
5071 5137 2.195727 TGGGTGTCCTATGAAGATGCA 58.804 47.619 0.00 0.00 0.00 3.96
5072 5138 3.281727 TTGGGTGTCCTATGAAGATGC 57.718 47.619 0.00 0.00 0.00 3.91
5073 5139 5.476599 TGTTTTTGGGTGTCCTATGAAGATG 59.523 40.000 0.00 0.00 0.00 2.90
5074 5140 5.640147 TGTTTTTGGGTGTCCTATGAAGAT 58.360 37.500 0.00 0.00 0.00 2.40
5075 5141 5.055265 TGTTTTTGGGTGTCCTATGAAGA 57.945 39.130 0.00 0.00 0.00 2.87
5076 5142 5.782893 TTGTTTTTGGGTGTCCTATGAAG 57.217 39.130 0.00 0.00 0.00 3.02
5077 5143 6.463614 CCAATTGTTTTTGGGTGTCCTATGAA 60.464 38.462 4.43 0.00 42.09 2.57
5078 5144 5.011533 CCAATTGTTTTTGGGTGTCCTATGA 59.988 40.000 4.43 0.00 42.09 2.15
5079 5145 5.237048 CCAATTGTTTTTGGGTGTCCTATG 58.763 41.667 4.43 0.00 42.09 2.23
5080 5146 5.482163 CCAATTGTTTTTGGGTGTCCTAT 57.518 39.130 4.43 0.00 42.09 2.57
5081 5147 4.946478 CCAATTGTTTTTGGGTGTCCTA 57.054 40.909 4.43 0.00 42.09 2.94
5082 5148 3.836365 CCAATTGTTTTTGGGTGTCCT 57.164 42.857 4.43 0.00 42.09 3.85
5089 5155 5.719563 AGGAGGTATACCCAATTGTTTTTGG 59.280 40.000 18.65 0.25 44.82 3.28
5090 5156 6.210584 ACAGGAGGTATACCCAATTGTTTTTG 59.789 38.462 18.65 5.63 36.42 2.44
5091 5157 6.319715 ACAGGAGGTATACCCAATTGTTTTT 58.680 36.000 18.65 0.00 36.42 1.94
5092 5158 5.899278 ACAGGAGGTATACCCAATTGTTTT 58.101 37.500 18.65 0.00 36.42 2.43
5093 5159 5.253096 AGACAGGAGGTATACCCAATTGTTT 59.747 40.000 18.65 10.20 36.42 2.83
5094 5160 4.788617 AGACAGGAGGTATACCCAATTGTT 59.211 41.667 18.65 0.00 36.42 2.83
5095 5161 4.371681 AGACAGGAGGTATACCCAATTGT 58.628 43.478 18.65 16.47 36.42 2.71
5096 5162 4.408921 TGAGACAGGAGGTATACCCAATTG 59.591 45.833 18.65 13.62 36.42 2.32
5097 5163 4.631234 TGAGACAGGAGGTATACCCAATT 58.369 43.478 18.65 0.00 36.42 2.32
5098 5164 4.078571 TCTGAGACAGGAGGTATACCCAAT 60.079 45.833 18.65 0.00 32.00 3.16
5099 5165 3.271225 TCTGAGACAGGAGGTATACCCAA 59.729 47.826 18.65 0.00 32.00 4.12
5100 5166 2.856864 TCTGAGACAGGAGGTATACCCA 59.143 50.000 18.65 5.74 32.00 4.51
5101 5167 3.596940 TCTGAGACAGGAGGTATACCC 57.403 52.381 18.65 9.80 32.00 3.69
5102 5168 4.083565 GGATCTGAGACAGGAGGTATACC 58.916 52.174 14.54 14.54 31.51 2.73
5103 5169 3.754323 CGGATCTGAGACAGGAGGTATAC 59.246 52.174 0.00 0.00 31.51 1.47
5104 5170 3.244946 CCGGATCTGAGACAGGAGGTATA 60.245 52.174 2.08 0.00 31.51 1.47
5105 5171 2.489985 CCGGATCTGAGACAGGAGGTAT 60.490 54.545 2.08 0.00 31.51 2.73
5106 5172 1.133761 CCGGATCTGAGACAGGAGGTA 60.134 57.143 2.08 0.00 31.51 3.08
5107 5173 0.396417 CCGGATCTGAGACAGGAGGT 60.396 60.000 2.08 0.00 31.51 3.85
5108 5174 0.106469 TCCGGATCTGAGACAGGAGG 60.106 60.000 0.00 0.00 31.51 4.30
5109 5175 1.680735 CTTCCGGATCTGAGACAGGAG 59.319 57.143 4.15 0.00 32.71 3.69
5110 5176 1.769026 CTTCCGGATCTGAGACAGGA 58.231 55.000 4.15 0.00 31.51 3.86
5111 5177 0.103937 GCTTCCGGATCTGAGACAGG 59.896 60.000 4.15 0.00 31.51 4.00
5112 5178 0.820226 TGCTTCCGGATCTGAGACAG 59.180 55.000 4.15 0.00 0.00 3.51
5113 5179 1.266178 TTGCTTCCGGATCTGAGACA 58.734 50.000 4.15 0.00 0.00 3.41
5114 5180 2.386661 TTTGCTTCCGGATCTGAGAC 57.613 50.000 4.15 0.00 0.00 3.36
5115 5181 2.355108 CCTTTTGCTTCCGGATCTGAGA 60.355 50.000 4.15 0.00 0.00 3.27
5116 5182 2.012673 CCTTTTGCTTCCGGATCTGAG 58.987 52.381 4.15 0.00 0.00 3.35
5117 5183 1.340017 CCCTTTTGCTTCCGGATCTGA 60.340 52.381 4.15 0.00 0.00 3.27
5118 5184 1.098050 CCCTTTTGCTTCCGGATCTG 58.902 55.000 4.15 0.00 0.00 2.90
5119 5185 0.991920 TCCCTTTTGCTTCCGGATCT 59.008 50.000 4.15 0.00 0.00 2.75
5120 5186 2.058593 ATCCCTTTTGCTTCCGGATC 57.941 50.000 4.15 0.21 0.00 3.36
5121 5187 2.102578 CAATCCCTTTTGCTTCCGGAT 58.897 47.619 4.15 0.00 34.76 4.18
5122 5188 1.203001 ACAATCCCTTTTGCTTCCGGA 60.203 47.619 0.00 0.00 0.00 5.14
5123 5189 1.256812 ACAATCCCTTTTGCTTCCGG 58.743 50.000 0.00 0.00 0.00 5.14
5124 5190 3.005791 AGAAACAATCCCTTTTGCTTCCG 59.994 43.478 0.00 0.00 33.97 4.30
5125 5191 4.607293 AGAAACAATCCCTTTTGCTTCC 57.393 40.909 0.00 0.00 33.97 3.46
5126 5192 6.575162 TCTAGAAACAATCCCTTTTGCTTC 57.425 37.500 0.00 0.00 33.77 3.86
5127 5193 6.976934 TTCTAGAAACAATCCCTTTTGCTT 57.023 33.333 1.68 0.00 0.00 3.91
5128 5194 6.127897 CGATTCTAGAAACAATCCCTTTTGCT 60.128 38.462 9.71 0.00 0.00 3.91
5129 5195 6.030228 CGATTCTAGAAACAATCCCTTTTGC 58.970 40.000 9.71 0.00 0.00 3.68
5130 5196 6.404734 CCCGATTCTAGAAACAATCCCTTTTG 60.405 42.308 9.71 0.00 0.00 2.44
5131 5197 5.652452 CCCGATTCTAGAAACAATCCCTTTT 59.348 40.000 9.71 0.00 0.00 2.27
5132 5198 5.193679 CCCGATTCTAGAAACAATCCCTTT 58.806 41.667 9.71 0.00 0.00 3.11
5133 5199 4.227527 ACCCGATTCTAGAAACAATCCCTT 59.772 41.667 9.71 0.00 0.00 3.95
5134 5200 3.780850 ACCCGATTCTAGAAACAATCCCT 59.219 43.478 9.71 0.00 0.00 4.20
5135 5201 4.127907 GACCCGATTCTAGAAACAATCCC 58.872 47.826 9.71 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.