Multiple sequence alignment - TraesCS5D01G528100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G528100 chr5D 100.000 3733 0 0 1 3733 545144447 545148179 0.000000e+00 6894
1 TraesCS5D01G528100 chr5D 78.776 1715 259 74 703 2359 545125043 545123376 0.000000e+00 1053
2 TraesCS5D01G528100 chr5B 93.586 3321 99 41 491 3733 687744900 687748184 0.000000e+00 4848
3 TraesCS5D01G528100 chr5B 80.184 868 136 24 1523 2366 687739430 687738575 5.300000e-173 617
4 TraesCS5D01G528100 chr5B 79.707 478 62 28 703 1169 687740223 687739770 2.800000e-81 313
5 TraesCS5D01G528100 chr5B 80.353 453 48 25 81 499 687744302 687744747 4.680000e-79 305
6 TraesCS5D01G528100 chr5B 93.902 82 5 0 1 82 81787683 81787764 1.410000e-24 124
7 TraesCS5D01G528100 chr1A 91.202 2387 135 39 641 3007 570155887 570153556 0.000000e+00 3175
8 TraesCS5D01G528100 chr1A 76.674 956 156 48 1791 2714 570160249 570161169 5.650000e-128 468
9 TraesCS5D01G528100 chr1A 98.230 113 2 0 3618 3730 570152492 570152380 8.180000e-47 198
10 TraesCS5D01G528100 chr4A 94.802 1289 48 8 2160 3445 624925814 624927086 0.000000e+00 1991
11 TraesCS5D01G528100 chr4A 83.056 720 76 25 641 1352 624925134 624925815 2.460000e-171 612
12 TraesCS5D01G528100 chr4A 98.606 287 4 0 3444 3730 624927346 624927632 3.330000e-140 508
13 TraesCS5D01G528100 chr2B 90.476 189 18 0 1239 1427 160281053 160281241 2.230000e-62 250
14 TraesCS5D01G528100 chr2A 78.398 412 67 16 1031 1428 107316408 107316811 8.010000e-62 248
15 TraesCS5D01G528100 chr3B 95.402 87 4 0 1 87 102577254 102577340 5.030000e-29 139
16 TraesCS5D01G528100 chr3B 95.122 82 4 0 1 82 826730813 826730732 3.030000e-26 130
17 TraesCS5D01G528100 chr7D 95.122 82 4 0 1 82 78671278 78671359 3.030000e-26 130
18 TraesCS5D01G528100 chr2D 95.122 82 4 0 1 82 578922820 578922901 3.030000e-26 130
19 TraesCS5D01G528100 chr7B 94.048 84 5 0 1 84 658172077 658172160 1.090000e-25 128
20 TraesCS5D01G528100 chr7A 95.062 81 4 0 2 82 727508856 727508936 1.090000e-25 128
21 TraesCS5D01G528100 chr4D 93.902 82 5 0 1 82 472418655 472418736 1.410000e-24 124
22 TraesCS5D01G528100 chr1D 90.217 92 9 0 1 92 418668943 418668852 1.820000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G528100 chr5D 545144447 545148179 3732 False 6894.0 6894 100.000000 1 3733 1 chr5D.!!$F1 3732
1 TraesCS5D01G528100 chr5D 545123376 545125043 1667 True 1053.0 1053 78.776000 703 2359 1 chr5D.!!$R1 1656
2 TraesCS5D01G528100 chr5B 687744302 687748184 3882 False 2576.5 4848 86.969500 81 3733 2 chr5B.!!$F2 3652
3 TraesCS5D01G528100 chr5B 687738575 687740223 1648 True 465.0 617 79.945500 703 2366 2 chr5B.!!$R1 1663
4 TraesCS5D01G528100 chr1A 570152380 570155887 3507 True 1686.5 3175 94.716000 641 3730 2 chr1A.!!$R1 3089
5 TraesCS5D01G528100 chr1A 570160249 570161169 920 False 468.0 468 76.674000 1791 2714 1 chr1A.!!$F1 923
6 TraesCS5D01G528100 chr4A 624925134 624927632 2498 False 1037.0 1991 92.154667 641 3730 3 chr4A.!!$F1 3089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.094730 CTACAGTGGCGCGCTAAAAC 59.905 55.0 32.29 22.40 0.00 2.43 F
132 134 0.099259 CATACATTGCCACACCGCAG 59.901 55.0 0.00 0.00 40.53 5.18 F
1036 1249 0.181114 TGCTGCAGAAGGTGACAAGT 59.819 50.0 20.43 0.00 0.00 3.16 F
1056 1272 0.324943 CGAAGGTGGTGACCATCCTT 59.675 55.0 27.27 27.27 45.98 3.36 F
2012 2305 1.179332 CGCCGCATTCAAAATACGTG 58.821 50.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 1225 0.250467 TCACCTTCTGCAGCAGAACC 60.250 55.000 30.44 0.0 44.27 3.62 R
1480 1712 0.516524 GATCGACGTTGAACTTGCGC 60.517 55.000 10.11 0.0 0.00 6.09 R
2246 2546 2.325082 GCCGGCGTTGAACATGTCT 61.325 57.895 12.58 0.0 0.00 3.41 R
2467 2805 3.197549 TGGATCATTGAGTCATCGGTTGA 59.802 43.478 0.00 0.0 0.00 3.18 R
3195 3592 2.492088 CTCACACCGTGTCCAAGATAGA 59.508 50.000 0.00 0.0 34.79 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.115892 TCCGGCGCGCTAAAAGTG 61.116 61.111 32.29 11.42 0.00 3.16
27 28 1.128692 CGCTAAAAGTGCTACAGTGGC 59.871 52.381 0.99 0.99 0.00 5.01
28 29 1.128692 GCTAAAAGTGCTACAGTGGCG 59.871 52.381 4.21 0.00 0.00 5.69
29 30 1.128692 CTAAAAGTGCTACAGTGGCGC 59.871 52.381 14.31 14.31 40.08 6.53
30 31 1.841663 AAAAGTGCTACAGTGGCGCG 61.842 55.000 15.94 0.00 43.87 6.86
33 34 3.754530 TGCTACAGTGGCGCGCTA 61.755 61.111 32.29 24.64 0.00 4.26
34 35 2.508439 GCTACAGTGGCGCGCTAA 60.508 61.111 32.29 17.34 0.00 3.09
35 36 2.098233 GCTACAGTGGCGCGCTAAA 61.098 57.895 32.29 14.50 0.00 1.85
36 37 1.632046 GCTACAGTGGCGCGCTAAAA 61.632 55.000 32.29 11.71 0.00 1.52
37 38 0.094730 CTACAGTGGCGCGCTAAAAC 59.905 55.000 32.29 22.40 0.00 2.43
38 39 0.320073 TACAGTGGCGCGCTAAAACT 60.320 50.000 32.29 24.17 0.00 2.66
39 40 0.320073 ACAGTGGCGCGCTAAAACTA 60.320 50.000 32.29 5.94 0.00 2.24
40 41 1.006832 CAGTGGCGCGCTAAAACTAT 58.993 50.000 32.29 4.36 0.00 2.12
41 42 1.396996 CAGTGGCGCGCTAAAACTATT 59.603 47.619 32.29 6.16 0.00 1.73
42 43 2.081462 AGTGGCGCGCTAAAACTATTT 58.919 42.857 32.29 5.82 0.00 1.40
43 44 2.486592 AGTGGCGCGCTAAAACTATTTT 59.513 40.909 32.29 5.46 36.67 1.82
44 45 3.685756 AGTGGCGCGCTAAAACTATTTTA 59.314 39.130 32.29 0.00 34.19 1.52
55 56 7.948513 CTAAAACTATTTTAGCGTGCGAAAT 57.051 32.000 7.85 11.81 43.74 2.17
56 57 8.376972 CTAAAACTATTTTAGCGTGCGAAATT 57.623 30.769 12.19 7.12 43.74 1.82
57 58 7.631915 AAAACTATTTTAGCGTGCGAAATTT 57.368 28.000 12.19 0.00 0.00 1.82
58 59 7.631915 AAACTATTTTAGCGTGCGAAATTTT 57.368 28.000 12.19 7.22 0.00 1.82
59 60 7.631915 AACTATTTTAGCGTGCGAAATTTTT 57.368 28.000 12.19 5.98 0.00 1.94
60 61 8.730970 AACTATTTTAGCGTGCGAAATTTTTA 57.269 26.923 12.19 0.00 0.00 1.52
61 62 8.905103 ACTATTTTAGCGTGCGAAATTTTTAT 57.095 26.923 12.19 2.22 0.00 1.40
62 63 8.794406 ACTATTTTAGCGTGCGAAATTTTTATG 58.206 29.630 12.19 0.00 0.00 1.90
63 64 5.428793 TTTAGCGTGCGAAATTTTTATGC 57.571 34.783 0.00 0.00 0.00 3.14
64 65 1.910819 AGCGTGCGAAATTTTTATGCG 59.089 42.857 0.00 0.00 0.00 4.73
66 67 1.007524 CGTGCGAAATTTTTATGCGCC 60.008 47.619 15.81 8.42 46.36 6.53
67 68 2.258755 GTGCGAAATTTTTATGCGCCT 58.741 42.857 15.81 0.00 46.36 5.52
68 69 2.027926 GTGCGAAATTTTTATGCGCCTG 59.972 45.455 15.81 0.00 46.36 4.85
69 70 2.258755 GCGAAATTTTTATGCGCCTGT 58.741 42.857 4.18 0.00 41.65 4.00
70 71 2.666022 GCGAAATTTTTATGCGCCTGTT 59.334 40.909 4.18 0.00 41.65 3.16
71 72 3.481789 GCGAAATTTTTATGCGCCTGTTG 60.482 43.478 4.18 0.00 41.65 3.33
72 73 3.060628 CGAAATTTTTATGCGCCTGTTGG 59.939 43.478 4.18 0.00 0.00 3.77
73 74 3.951775 AATTTTTATGCGCCTGTTGGA 57.048 38.095 4.18 0.00 34.57 3.53
74 75 3.508744 ATTTTTATGCGCCTGTTGGAG 57.491 42.857 4.18 0.00 36.16 3.86
75 76 2.192664 TTTTATGCGCCTGTTGGAGA 57.807 45.000 4.18 0.00 34.95 3.71
76 77 2.418368 TTTATGCGCCTGTTGGAGAT 57.582 45.000 4.18 0.00 34.95 2.75
77 78 1.667236 TTATGCGCCTGTTGGAGATG 58.333 50.000 4.18 0.00 34.95 2.90
78 79 0.815213 TATGCGCCTGTTGGAGATGC 60.815 55.000 4.18 0.00 34.95 3.91
79 80 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
80 81 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
81 82 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
82 83 1.088340 CGCCTGTTGGAGATGCTCTG 61.088 60.000 0.00 0.00 34.95 3.35
83 84 0.251354 GCCTGTTGGAGATGCTCTGA 59.749 55.000 0.00 0.00 34.57 3.27
84 85 1.134159 GCCTGTTGGAGATGCTCTGAT 60.134 52.381 0.00 0.00 34.57 2.90
85 86 2.562635 CCTGTTGGAGATGCTCTGATG 58.437 52.381 0.00 0.00 34.57 3.07
95 96 2.654749 TGCTCTGATGTTAGGTGTCG 57.345 50.000 0.00 0.00 0.00 4.35
115 117 3.117794 CGCGCAAAATTGGATCAATCAT 58.882 40.909 8.75 0.00 32.43 2.45
125 127 5.518848 TTGGATCAATCATACATTGCCAC 57.481 39.130 0.00 0.00 0.00 5.01
129 131 2.682352 TCAATCATACATTGCCACACCG 59.318 45.455 0.00 0.00 0.00 4.94
130 132 1.024271 ATCATACATTGCCACACCGC 58.976 50.000 0.00 0.00 0.00 5.68
131 133 0.322008 TCATACATTGCCACACCGCA 60.322 50.000 0.00 0.00 36.85 5.69
132 134 0.099259 CATACATTGCCACACCGCAG 59.901 55.000 0.00 0.00 40.53 5.18
133 135 0.322456 ATACATTGCCACACCGCAGT 60.322 50.000 0.00 0.00 40.53 4.40
142 150 2.210116 CCACACCGCAGTCCATTATAC 58.790 52.381 0.00 0.00 0.00 1.47
145 153 3.687212 CACACCGCAGTCCATTATACAAA 59.313 43.478 0.00 0.00 0.00 2.83
241 253 4.859629 ACAGAGACAAAACAGTTCGAAC 57.140 40.909 20.71 20.71 0.00 3.95
262 274 2.947652 CTCCTATGAGTGTGCATTTGGG 59.052 50.000 0.00 0.00 33.70 4.12
285 297 1.153349 CGGGTTCCCTAGAGCTTGC 60.153 63.158 6.31 0.00 0.00 4.01
287 299 0.548510 GGGTTCCCTAGAGCTTGCAT 59.451 55.000 0.00 0.00 0.00 3.96
288 300 1.064389 GGGTTCCCTAGAGCTTGCATT 60.064 52.381 0.00 0.00 0.00 3.56
299 311 7.148523 CCCTAGAGCTTGCATTTTTCAAAAATC 60.149 37.037 5.04 2.38 0.00 2.17
357 369 3.247006 CGTAAGTAGGGATGTGCAGTT 57.753 47.619 0.00 0.00 0.00 3.16
358 370 3.187700 CGTAAGTAGGGATGTGCAGTTC 58.812 50.000 0.00 0.00 0.00 3.01
359 371 3.368013 CGTAAGTAGGGATGTGCAGTTCA 60.368 47.826 0.00 0.00 0.00 3.18
360 372 4.680708 CGTAAGTAGGGATGTGCAGTTCAT 60.681 45.833 0.00 0.00 0.00 2.57
361 373 3.272574 AGTAGGGATGTGCAGTTCATG 57.727 47.619 0.00 0.00 0.00 3.07
362 374 2.573462 AGTAGGGATGTGCAGTTCATGT 59.427 45.455 0.00 0.00 0.00 3.21
364 376 2.880443 AGGGATGTGCAGTTCATGTTT 58.120 42.857 0.00 0.00 0.00 2.83
365 377 2.559668 AGGGATGTGCAGTTCATGTTTG 59.440 45.455 0.00 0.00 0.00 2.93
366 378 2.297033 GGGATGTGCAGTTCATGTTTGT 59.703 45.455 0.00 0.00 0.00 2.83
367 379 3.505680 GGGATGTGCAGTTCATGTTTGTA 59.494 43.478 0.00 0.00 0.00 2.41
368 380 4.022416 GGGATGTGCAGTTCATGTTTGTAA 60.022 41.667 0.00 0.00 0.00 2.41
371 404 6.089820 GGATGTGCAGTTCATGTTTGTAATTG 59.910 38.462 0.00 0.00 0.00 2.32
374 407 6.696583 TGTGCAGTTCATGTTTGTAATTGAAG 59.303 34.615 0.00 0.00 0.00 3.02
376 409 6.696583 TGCAGTTCATGTTTGTAATTGAAGTG 59.303 34.615 12.65 12.65 45.67 3.16
377 410 6.697019 GCAGTTCATGTTTGTAATTGAAGTGT 59.303 34.615 16.36 0.00 45.12 3.55
387 420 7.462109 TTGTAATTGAAGTGTGTTTTGATGC 57.538 32.000 0.00 0.00 0.00 3.91
388 421 6.567959 TGTAATTGAAGTGTGTTTTGATGCA 58.432 32.000 0.00 0.00 0.00 3.96
397 430 2.281234 GTGTTTTGATGCAAACCACACG 59.719 45.455 13.38 0.00 43.11 4.49
401 434 2.483583 TGATGCAAACCACACGAAAC 57.516 45.000 0.00 0.00 0.00 2.78
406 439 1.466024 GCAAACCACACGAAACGAACA 60.466 47.619 0.00 0.00 0.00 3.18
407 440 2.793237 GCAAACCACACGAAACGAACAT 60.793 45.455 0.00 0.00 0.00 2.71
408 441 2.748461 AACCACACGAAACGAACATG 57.252 45.000 0.00 0.00 0.00 3.21
409 442 1.942677 ACCACACGAAACGAACATGA 58.057 45.000 0.00 0.00 0.00 3.07
410 443 2.281517 ACCACACGAAACGAACATGAA 58.718 42.857 0.00 0.00 0.00 2.57
411 444 2.031191 ACCACACGAAACGAACATGAAC 59.969 45.455 0.00 0.00 0.00 3.18
412 445 2.286833 CCACACGAAACGAACATGAACT 59.713 45.455 0.00 0.00 0.00 3.01
414 447 4.339429 CACACGAAACGAACATGAACTTT 58.661 39.130 0.00 0.00 0.00 2.66
415 448 5.494618 CACACGAAACGAACATGAACTTTA 58.505 37.500 0.00 0.00 0.00 1.85
416 449 6.133392 CACACGAAACGAACATGAACTTTAT 58.867 36.000 0.00 0.00 0.00 1.40
432 465 3.251729 ACTTTATGTGAGCAGTGCAAGTG 59.748 43.478 19.20 1.67 41.28 3.16
440 473 2.449548 CAGTGCAAGTGCTAGACCG 58.550 57.895 4.69 0.00 42.66 4.79
456 489 5.410439 GCTAGACCGTGATTTTCCTTAAACA 59.590 40.000 0.00 0.00 0.00 2.83
493 526 8.797438 TGGAACTTTACAAACATGCAATATACA 58.203 29.630 0.00 0.00 0.00 2.29
494 527 9.801873 GGAACTTTACAAACATGCAATATACAT 57.198 29.630 0.00 0.00 0.00 2.29
497 530 8.413229 ACTTTACAAACATGCAATATACATCCC 58.587 33.333 0.00 0.00 0.00 3.85
498 531 8.532186 TTTACAAACATGCAATATACATCCCT 57.468 30.769 0.00 0.00 0.00 4.20
499 532 9.634021 TTTACAAACATGCAATATACATCCCTA 57.366 29.630 0.00 0.00 0.00 3.53
500 533 9.806448 TTACAAACATGCAATATACATCCCTAT 57.194 29.630 0.00 0.00 0.00 2.57
505 538 9.806448 AACATGCAATATACATCCCTATTTACA 57.194 29.630 0.00 0.00 0.00 2.41
506 539 9.231297 ACATGCAATATACATCCCTATTTACAC 57.769 33.333 0.00 0.00 0.00 2.90
636 833 5.626809 GCCTCTAACTACATCCATGTTCACA 60.627 44.000 0.00 0.00 41.97 3.58
645 842 7.882791 ACTACATCCATGTTCACAACAATAAGA 59.117 33.333 0.00 0.00 45.86 2.10
656 853 5.009110 TCACAACAATAAGAATTGCCGACAA 59.991 36.000 0.00 0.00 45.41 3.18
688 885 7.568199 ACTCCATTGTATTAAAAAGGATCGG 57.432 36.000 0.00 0.00 0.00 4.18
689 886 7.343357 ACTCCATTGTATTAAAAAGGATCGGA 58.657 34.615 0.00 0.00 0.00 4.55
719 916 9.393512 AGAGAGAAAGGATCTGAATTTGTAATG 57.606 33.333 0.00 0.00 38.96 1.90
818 1023 8.009974 CCTTTTGACGTCTGACTTTGTAATTAG 58.990 37.037 17.92 0.76 0.00 1.73
865 1071 6.879458 ACTAGTGGTGTTGCTTCTTAATTAGG 59.121 38.462 0.00 0.00 0.00 2.69
1012 1225 0.599558 CAAACTGATGGCAGGTGGTG 59.400 55.000 0.00 0.00 42.49 4.17
1036 1249 0.181114 TGCTGCAGAAGGTGACAAGT 59.819 50.000 20.43 0.00 0.00 3.16
1056 1272 0.324943 CGAAGGTGGTGACCATCCTT 59.675 55.000 27.27 27.27 45.98 3.36
1133 1349 2.028385 TCGAAAAGGAGCTCCAGGTAAC 60.028 50.000 33.90 17.68 38.89 2.50
1135 1351 2.861147 AAAGGAGCTCCAGGTAACAC 57.139 50.000 33.90 4.03 38.89 3.32
1392 1624 6.276847 CAAGGATCTAGCGAAGTTCTACATT 58.723 40.000 0.56 0.00 0.00 2.71
1480 1712 7.925703 ATATGTCGTCCATTTCTTTACTACG 57.074 36.000 0.00 0.00 34.86 3.51
1543 1805 1.305623 CTGCAGGGGCTCCATCTTT 59.694 57.895 4.79 0.00 41.91 2.52
1737 2003 1.340893 CCAGGTATCCATGTGGTGCAA 60.341 52.381 0.00 0.00 36.34 4.08
2012 2305 1.179332 CGCCGCATTCAAAATACGTG 58.821 50.000 0.00 0.00 0.00 4.49
2035 2328 6.258727 GTGTACACAATAATCTCACTCATGGG 59.741 42.308 21.14 0.00 0.00 4.00
2246 2546 2.122989 GGCTCCGTCCCCATCCTA 60.123 66.667 0.00 0.00 0.00 2.94
2456 2794 3.813443 AGCCATCCATCATCTGTTGTAC 58.187 45.455 0.00 0.00 0.00 2.90
2459 2797 4.993584 GCCATCCATCATCTGTTGTACTAG 59.006 45.833 0.00 0.00 0.00 2.57
2460 2798 5.453903 GCCATCCATCATCTGTTGTACTAGT 60.454 44.000 0.00 0.00 0.00 2.57
2461 2799 6.239317 GCCATCCATCATCTGTTGTACTAGTA 60.239 42.308 0.00 0.00 0.00 1.82
2462 2800 7.686859 GCCATCCATCATCTGTTGTACTAGTAA 60.687 40.741 3.61 0.00 0.00 2.24
2463 2801 8.370940 CCATCCATCATCTGTTGTACTAGTAAT 58.629 37.037 3.61 0.00 0.00 1.89
2464 2802 9.201127 CATCCATCATCTGTTGTACTAGTAATG 57.799 37.037 3.61 4.05 0.00 1.90
2465 2803 8.533569 TCCATCATCTGTTGTACTAGTAATGA 57.466 34.615 12.73 12.73 0.00 2.57
2466 2804 8.414003 TCCATCATCTGTTGTACTAGTAATGAC 58.586 37.037 12.65 8.87 0.00 3.06
2467 2805 8.417106 CCATCATCTGTTGTACTAGTAATGACT 58.583 37.037 12.65 0.00 39.92 3.41
2468 2806 9.457110 CATCATCTGTTGTACTAGTAATGACTC 57.543 37.037 12.65 0.00 37.10 3.36
2469 2807 8.575649 TCATCTGTTGTACTAGTAATGACTCA 57.424 34.615 3.61 0.00 37.10 3.41
2470 2808 9.020731 TCATCTGTTGTACTAGTAATGACTCAA 57.979 33.333 3.61 0.80 37.10 3.02
2471 2809 9.077674 CATCTGTTGTACTAGTAATGACTCAAC 57.922 37.037 18.14 18.14 37.27 3.18
2472 2810 7.600065 TCTGTTGTACTAGTAATGACTCAACC 58.400 38.462 20.43 9.74 36.53 3.77
2473 2811 6.384224 TGTTGTACTAGTAATGACTCAACCG 58.616 40.000 20.43 0.00 36.53 4.44
2831 3181 5.964958 TGGGAGTTCAATCTGTTTGATTC 57.035 39.130 2.27 4.24 43.73 2.52
2883 3236 7.865385 TGTTGTAATAGTCTTGTGCAAAAATCC 59.135 33.333 0.00 0.00 0.00 3.01
2953 3332 9.330063 TGTGGAAATGATATCACTAGATTTGTC 57.670 33.333 7.78 0.00 35.67 3.18
3037 3416 4.666512 AGTTTCATGGCCATTGTTAGAGT 58.333 39.130 17.92 0.00 0.00 3.24
3038 3417 5.079643 AGTTTCATGGCCATTGTTAGAGTT 58.920 37.500 17.92 0.00 0.00 3.01
3039 3418 6.245408 AGTTTCATGGCCATTGTTAGAGTTA 58.755 36.000 17.92 0.00 0.00 2.24
3040 3419 6.719370 AGTTTCATGGCCATTGTTAGAGTTAA 59.281 34.615 17.92 0.00 0.00 2.01
3041 3420 6.509418 TTCATGGCCATTGTTAGAGTTAAC 57.491 37.500 17.92 0.00 39.69 2.01
3042 3421 5.565509 TCATGGCCATTGTTAGAGTTAACA 58.434 37.500 17.92 0.00 45.54 2.41
3093 3490 8.682936 ACCAGAAATGCTATTTCTACCTAATG 57.317 34.615 17.88 9.20 36.69 1.90
3420 3817 8.028938 ACTTGCAAGTATCCATAAATTGTCAAC 58.971 33.333 30.25 0.00 37.52 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.115892 CACTTTTAGCGCGCCGGA 61.116 61.111 30.33 11.20 0.00 5.14
1 2 4.811761 GCACTTTTAGCGCGCCGG 62.812 66.667 30.33 15.60 0.00 6.13
2 3 2.449525 TAGCACTTTTAGCGCGCCG 61.450 57.895 30.33 13.74 37.01 6.46
3 4 1.060465 GTAGCACTTTTAGCGCGCC 59.940 57.895 30.33 9.85 37.01 6.53
5 6 1.068474 ACTGTAGCACTTTTAGCGCG 58.932 50.000 0.00 0.00 37.01 6.86
6 7 1.128692 CCACTGTAGCACTTTTAGCGC 59.871 52.381 0.00 0.00 37.01 5.92
7 8 1.128692 GCCACTGTAGCACTTTTAGCG 59.871 52.381 0.00 0.00 37.01 4.26
8 9 1.128692 CGCCACTGTAGCACTTTTAGC 59.871 52.381 0.00 0.00 0.00 3.09
9 10 1.128692 GCGCCACTGTAGCACTTTTAG 59.871 52.381 0.00 0.00 0.00 1.85
10 11 1.153353 GCGCCACTGTAGCACTTTTA 58.847 50.000 0.00 0.00 0.00 1.52
11 12 1.841663 CGCGCCACTGTAGCACTTTT 61.842 55.000 0.00 0.00 0.00 2.27
12 13 2.317609 CGCGCCACTGTAGCACTTT 61.318 57.895 0.00 0.00 0.00 2.66
13 14 2.738521 CGCGCCACTGTAGCACTT 60.739 61.111 0.00 0.00 0.00 3.16
15 16 3.982372 TAGCGCGCCACTGTAGCAC 62.982 63.158 30.33 0.00 0.00 4.40
16 17 2.773397 TTTAGCGCGCCACTGTAGCA 62.773 55.000 30.33 0.71 0.00 3.49
17 18 1.632046 TTTTAGCGCGCCACTGTAGC 61.632 55.000 30.33 0.00 0.00 3.58
18 19 0.094730 GTTTTAGCGCGCCACTGTAG 59.905 55.000 30.33 0.00 0.00 2.74
19 20 0.320073 AGTTTTAGCGCGCCACTGTA 60.320 50.000 30.33 10.64 0.00 2.74
20 21 0.320073 TAGTTTTAGCGCGCCACTGT 60.320 50.000 30.33 11.88 0.00 3.55
21 22 1.006832 ATAGTTTTAGCGCGCCACTG 58.993 50.000 30.33 0.00 0.00 3.66
22 23 1.734163 AATAGTTTTAGCGCGCCACT 58.266 45.000 30.33 25.00 0.00 4.00
23 24 2.537639 AAATAGTTTTAGCGCGCCAC 57.462 45.000 30.33 19.26 0.00 5.01
24 25 4.267357 CTAAAATAGTTTTAGCGCGCCA 57.733 40.909 30.33 12.88 43.74 5.69
32 33 8.730970 AAATTTCGCACGCTAAAATAGTTTTA 57.269 26.923 0.00 0.00 34.19 1.52
33 34 7.631915 AAATTTCGCACGCTAAAATAGTTTT 57.368 28.000 0.00 0.00 36.67 2.43
34 35 7.631915 AAAATTTCGCACGCTAAAATAGTTT 57.368 28.000 0.00 0.00 0.00 2.66
35 36 7.631915 AAAAATTTCGCACGCTAAAATAGTT 57.368 28.000 0.00 0.00 0.00 2.24
36 37 8.794406 CATAAAAATTTCGCACGCTAAAATAGT 58.206 29.630 0.00 0.00 0.00 2.12
37 38 7.782955 GCATAAAAATTTCGCACGCTAAAATAG 59.217 33.333 0.00 0.00 0.00 1.73
38 39 7.512272 CGCATAAAAATTTCGCACGCTAAAATA 60.512 33.333 0.00 0.00 0.00 1.40
39 40 6.465978 GCATAAAAATTTCGCACGCTAAAAT 58.534 32.000 0.00 0.00 0.00 1.82
40 41 5.442130 CGCATAAAAATTTCGCACGCTAAAA 60.442 36.000 0.00 0.00 0.00 1.52
41 42 4.029640 CGCATAAAAATTTCGCACGCTAAA 59.970 37.500 0.00 0.00 0.00 1.85
42 43 3.540346 CGCATAAAAATTTCGCACGCTAA 59.460 39.130 0.00 0.00 0.00 3.09
43 44 3.095016 CGCATAAAAATTTCGCACGCTA 58.905 40.909 0.00 0.00 0.00 4.26
44 45 1.910819 CGCATAAAAATTTCGCACGCT 59.089 42.857 0.00 0.00 0.00 5.07
45 46 1.586446 GCGCATAAAAATTTCGCACGC 60.586 47.619 14.21 11.48 44.50 5.34
46 47 1.007524 GGCGCATAAAAATTTCGCACG 60.008 47.619 18.95 9.08 46.60 5.34
47 48 2.027926 CAGGCGCATAAAAATTTCGCAC 59.972 45.455 18.95 10.74 46.60 5.34
48 49 2.257894 CAGGCGCATAAAAATTTCGCA 58.742 42.857 18.95 0.00 46.60 5.10
49 50 2.258755 ACAGGCGCATAAAAATTTCGC 58.741 42.857 10.83 11.52 44.39 4.70
50 51 3.060628 CCAACAGGCGCATAAAAATTTCG 59.939 43.478 10.83 0.00 0.00 3.46
51 52 4.241681 TCCAACAGGCGCATAAAAATTTC 58.758 39.130 10.83 0.00 0.00 2.17
52 53 4.021544 TCTCCAACAGGCGCATAAAAATTT 60.022 37.500 10.83 0.00 0.00 1.82
53 54 3.509575 TCTCCAACAGGCGCATAAAAATT 59.490 39.130 10.83 0.00 0.00 1.82
54 55 3.088532 TCTCCAACAGGCGCATAAAAAT 58.911 40.909 10.83 0.00 0.00 1.82
55 56 2.509569 TCTCCAACAGGCGCATAAAAA 58.490 42.857 10.83 0.00 0.00 1.94
56 57 2.192664 TCTCCAACAGGCGCATAAAA 57.807 45.000 10.83 0.00 0.00 1.52
57 58 2.016318 CATCTCCAACAGGCGCATAAA 58.984 47.619 10.83 0.00 0.00 1.40
58 59 1.667236 CATCTCCAACAGGCGCATAA 58.333 50.000 10.83 0.00 0.00 1.90
59 60 0.815213 GCATCTCCAACAGGCGCATA 60.815 55.000 10.83 0.00 0.00 3.14
60 61 2.117156 GCATCTCCAACAGGCGCAT 61.117 57.895 10.83 0.00 0.00 4.73
61 62 2.747460 GCATCTCCAACAGGCGCA 60.747 61.111 10.83 0.00 0.00 6.09
62 63 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
63 64 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
74 75 3.119291 CGACACCTAACATCAGAGCATC 58.881 50.000 0.00 0.00 0.00 3.91
75 76 2.739932 GCGACACCTAACATCAGAGCAT 60.740 50.000 0.00 0.00 0.00 3.79
76 77 1.404181 GCGACACCTAACATCAGAGCA 60.404 52.381 0.00 0.00 0.00 4.26
77 78 1.281899 GCGACACCTAACATCAGAGC 58.718 55.000 0.00 0.00 0.00 4.09
78 79 1.550065 CGCGACACCTAACATCAGAG 58.450 55.000 0.00 0.00 0.00 3.35
79 80 0.457853 GCGCGACACCTAACATCAGA 60.458 55.000 12.10 0.00 0.00 3.27
80 81 0.735978 TGCGCGACACCTAACATCAG 60.736 55.000 12.10 0.00 0.00 2.90
81 82 0.319986 TTGCGCGACACCTAACATCA 60.320 50.000 12.10 0.00 0.00 3.07
82 83 0.793861 TTTGCGCGACACCTAACATC 59.206 50.000 12.10 0.00 0.00 3.06
83 84 1.231221 TTTTGCGCGACACCTAACAT 58.769 45.000 12.10 0.00 0.00 2.71
84 85 1.231221 ATTTTGCGCGACACCTAACA 58.769 45.000 12.10 0.00 0.00 2.41
85 86 1.976045 CAATTTTGCGCGACACCTAAC 59.024 47.619 12.10 0.00 0.00 2.34
95 96 5.042593 TGTATGATTGATCCAATTTTGCGC 58.957 37.500 0.00 0.00 33.90 6.09
115 117 0.953471 GACTGCGGTGTGGCAATGTA 60.953 55.000 0.80 0.00 43.39 2.29
125 127 6.801539 ATATTTGTATAATGGACTGCGGTG 57.198 37.500 0.80 0.00 0.00 4.94
175 187 4.895297 TGAGGAATCCATAAAATGCTTCCC 59.105 41.667 0.61 7.65 39.46 3.97
211 223 7.948278 ACTGTTTTGTCTCTGTATGAACTAC 57.052 36.000 0.00 0.00 0.00 2.73
241 253 2.947652 CCCAAATGCACACTCATAGGAG 59.052 50.000 2.12 2.12 46.96 3.69
321 333 8.885722 CCCTACTTACGTGCATATTTTTAAGAA 58.114 33.333 0.00 0.00 0.00 2.52
322 334 8.259411 TCCCTACTTACGTGCATATTTTTAAGA 58.741 33.333 0.00 0.00 0.00 2.10
323 335 8.428186 TCCCTACTTACGTGCATATTTTTAAG 57.572 34.615 0.00 0.00 0.00 1.85
324 336 8.832521 CATCCCTACTTACGTGCATATTTTTAA 58.167 33.333 0.00 0.00 0.00 1.52
325 337 7.988599 ACATCCCTACTTACGTGCATATTTTTA 59.011 33.333 0.00 0.00 0.00 1.52
326 338 6.826741 ACATCCCTACTTACGTGCATATTTTT 59.173 34.615 0.00 0.00 0.00 1.94
329 341 5.297547 CACATCCCTACTTACGTGCATATT 58.702 41.667 0.00 0.00 0.00 1.28
333 345 1.404986 GCACATCCCTACTTACGTGCA 60.405 52.381 0.00 0.00 46.80 4.57
335 347 2.094182 ACTGCACATCCCTACTTACGTG 60.094 50.000 0.00 0.00 0.00 4.49
336 348 2.176889 ACTGCACATCCCTACTTACGT 58.823 47.619 0.00 0.00 0.00 3.57
337 349 2.961526 ACTGCACATCCCTACTTACG 57.038 50.000 0.00 0.00 0.00 3.18
338 350 4.202245 TGAACTGCACATCCCTACTTAC 57.798 45.455 0.00 0.00 0.00 2.34
339 351 4.225042 ACATGAACTGCACATCCCTACTTA 59.775 41.667 0.00 0.00 0.00 2.24
342 354 2.991250 ACATGAACTGCACATCCCTAC 58.009 47.619 0.00 0.00 0.00 3.18
344 356 2.559668 CAAACATGAACTGCACATCCCT 59.440 45.455 0.00 0.00 0.00 4.20
345 357 2.297033 ACAAACATGAACTGCACATCCC 59.703 45.455 0.00 0.00 0.00 3.85
346 358 3.648339 ACAAACATGAACTGCACATCC 57.352 42.857 0.00 0.00 0.00 3.51
347 359 6.862608 TCAATTACAAACATGAACTGCACATC 59.137 34.615 0.00 0.00 0.00 3.06
348 360 6.747125 TCAATTACAAACATGAACTGCACAT 58.253 32.000 0.00 0.00 0.00 3.21
349 361 6.141560 TCAATTACAAACATGAACTGCACA 57.858 33.333 0.00 0.00 0.00 4.57
350 362 6.697019 ACTTCAATTACAAACATGAACTGCAC 59.303 34.615 0.00 0.00 0.00 4.57
351 363 6.696583 CACTTCAATTACAAACATGAACTGCA 59.303 34.615 0.00 0.00 0.00 4.41
352 364 6.697019 ACACTTCAATTACAAACATGAACTGC 59.303 34.615 0.00 0.00 0.00 4.40
354 366 7.771183 ACACACTTCAATTACAAACATGAACT 58.229 30.769 0.00 0.00 0.00 3.01
357 369 8.867935 CAAAACACACTTCAATTACAAACATGA 58.132 29.630 0.00 0.00 0.00 3.07
358 370 8.867935 TCAAAACACACTTCAATTACAAACATG 58.132 29.630 0.00 0.00 0.00 3.21
359 371 8.994429 TCAAAACACACTTCAATTACAAACAT 57.006 26.923 0.00 0.00 0.00 2.71
360 372 8.867935 CATCAAAACACACTTCAATTACAAACA 58.132 29.630 0.00 0.00 0.00 2.83
361 373 7.845622 GCATCAAAACACACTTCAATTACAAAC 59.154 33.333 0.00 0.00 0.00 2.93
362 374 7.547019 TGCATCAAAACACACTTCAATTACAAA 59.453 29.630 0.00 0.00 0.00 2.83
364 376 6.567959 TGCATCAAAACACACTTCAATTACA 58.432 32.000 0.00 0.00 0.00 2.41
365 377 7.462109 TTGCATCAAAACACACTTCAATTAC 57.538 32.000 0.00 0.00 0.00 1.89
366 378 7.010923 GGTTTGCATCAAAACACACTTCAATTA 59.989 33.333 2.76 0.00 40.38 1.40
367 379 6.183360 GGTTTGCATCAAAACACACTTCAATT 60.183 34.615 2.76 0.00 40.38 2.32
368 380 5.294060 GGTTTGCATCAAAACACACTTCAAT 59.706 36.000 2.76 0.00 40.38 2.57
371 404 4.180057 TGGTTTGCATCAAAACACACTTC 58.820 39.130 5.98 0.00 44.63 3.01
377 410 2.164422 TCGTGTGGTTTGCATCAAAACA 59.836 40.909 5.98 5.98 46.83 2.83
387 420 2.529136 TGTTCGTTTCGTGTGGTTTG 57.471 45.000 0.00 0.00 0.00 2.93
388 421 2.678836 TCATGTTCGTTTCGTGTGGTTT 59.321 40.909 0.00 0.00 0.00 3.27
395 428 6.018588 TCACATAAAGTTCATGTTCGTTTCGT 60.019 34.615 0.00 0.00 34.39 3.85
397 430 6.303259 GCTCACATAAAGTTCATGTTCGTTTC 59.697 38.462 0.00 0.00 34.39 2.78
401 434 5.106948 ACTGCTCACATAAAGTTCATGTTCG 60.107 40.000 0.00 0.00 34.39 3.95
406 439 4.074259 TGCACTGCTCACATAAAGTTCAT 58.926 39.130 1.98 0.00 0.00 2.57
407 440 3.475575 TGCACTGCTCACATAAAGTTCA 58.524 40.909 1.98 0.00 0.00 3.18
408 441 4.023707 ACTTGCACTGCTCACATAAAGTTC 60.024 41.667 1.98 0.00 0.00 3.01
409 442 3.885297 ACTTGCACTGCTCACATAAAGTT 59.115 39.130 1.98 0.00 0.00 2.66
410 443 3.251729 CACTTGCACTGCTCACATAAAGT 59.748 43.478 1.98 0.00 0.00 2.66
411 444 3.818387 CACTTGCACTGCTCACATAAAG 58.182 45.455 1.98 0.00 0.00 1.85
412 445 2.030893 GCACTTGCACTGCTCACATAAA 60.031 45.455 8.09 0.00 41.59 1.40
414 447 1.159285 GCACTTGCACTGCTCACATA 58.841 50.000 8.09 0.00 41.59 2.29
415 448 0.536687 AGCACTTGCACTGCTCACAT 60.537 50.000 11.56 0.00 41.27 3.21
416 449 0.106521 TAGCACTTGCACTGCTCACA 59.893 50.000 19.09 2.48 44.07 3.58
432 465 5.410439 TGTTTAAGGAAAATCACGGTCTAGC 59.590 40.000 0.00 0.00 0.00 3.42
493 526 2.504175 AGGCACACGTGTAAATAGGGAT 59.496 45.455 22.90 0.00 0.00 3.85
494 527 1.903860 AGGCACACGTGTAAATAGGGA 59.096 47.619 22.90 0.00 0.00 4.20
497 530 5.178623 TCTGAAAAGGCACACGTGTAAATAG 59.821 40.000 22.90 9.88 0.00 1.73
498 531 5.057819 TCTGAAAAGGCACACGTGTAAATA 58.942 37.500 22.90 1.98 0.00 1.40
499 532 3.880490 TCTGAAAAGGCACACGTGTAAAT 59.120 39.130 22.90 6.89 0.00 1.40
500 533 3.271729 TCTGAAAAGGCACACGTGTAAA 58.728 40.909 22.90 0.08 0.00 2.01
503 536 1.745232 TTCTGAAAAGGCACACGTGT 58.255 45.000 17.22 17.22 0.00 4.49
505 538 4.097892 AGAAAATTCTGAAAAGGCACACGT 59.902 37.500 0.00 0.00 35.89 4.49
506 539 4.610945 AGAAAATTCTGAAAAGGCACACG 58.389 39.130 0.00 0.00 35.89 4.49
537 734 8.940768 TCGGAAAAACTCAAAAATCAGATTTT 57.059 26.923 14.43 14.43 43.83 1.82
560 757 0.463654 TCCATGGAAGCCCGAATTCG 60.464 55.000 20.92 20.92 39.44 3.34
572 769 2.849162 GGATCCCGGCTCCATGGA 60.849 66.667 15.27 15.27 32.72 3.41
582 779 2.233431 TGGAAATTGCTTTTGGATCCCG 59.767 45.455 9.90 0.00 0.00 5.14
636 833 5.473504 AGACTTGTCGGCAATTCTTATTGTT 59.526 36.000 16.01 0.00 40.31 2.83
645 842 3.214328 AGTTGAAGACTTGTCGGCAATT 58.786 40.909 1.35 0.00 33.92 2.32
688 885 6.966534 ATTCAGATCCTTTCTCTCTCTCTC 57.033 41.667 0.00 0.00 29.93 3.20
689 886 7.180766 ACAAATTCAGATCCTTTCTCTCTCTCT 59.819 37.037 0.00 0.00 29.93 3.10
719 916 4.110036 AGTTCCTTGTGCACAAAAGAAC 57.890 40.909 38.05 38.05 42.94 3.01
865 1071 5.849081 TCTGAAACAACGTTCGCATAAATTC 59.151 36.000 0.00 0.00 0.00 2.17
982 1195 3.119708 GCCATCAGTTTGGAGTTTGCTAG 60.120 47.826 0.00 0.00 39.25 3.42
1012 1225 0.250467 TCACCTTCTGCAGCAGAACC 60.250 55.000 30.44 0.00 44.27 3.62
1036 1249 0.544357 AGGATGGTCACCACCTTCGA 60.544 55.000 0.00 0.00 44.52 3.71
1056 1272 4.662961 CCGCCGCCATCGATGCTA 62.663 66.667 20.25 0.00 38.10 3.49
1133 1349 6.183359 CGATGATGAACGTATATCGAAGTGTG 60.183 42.308 11.76 0.00 42.16 3.82
1135 1351 6.077838 TCGATGATGAACGTATATCGAAGTG 58.922 40.000 15.33 3.33 44.33 3.16
1213 1438 6.127225 ACACAACTCATGCAGTGATATACTCT 60.127 38.462 8.35 0.00 37.60 3.24
1308 1540 1.450312 CATCACCGTCAAGAGGCCC 60.450 63.158 0.00 0.00 0.00 5.80
1392 1624 0.965866 AGATCTTGGGCGACTCGTCA 60.966 55.000 5.24 0.00 30.88 4.35
1480 1712 0.516524 GATCGACGTTGAACTTGCGC 60.517 55.000 10.11 0.00 0.00 6.09
2004 2290 8.997621 AGTGAGATTATTGTGTACACGTATTT 57.002 30.769 20.61 5.94 33.00 1.40
2012 2305 5.237344 GCCCATGAGTGAGATTATTGTGTAC 59.763 44.000 0.00 0.00 0.00 2.90
2246 2546 2.325082 GCCGGCGTTGAACATGTCT 61.325 57.895 12.58 0.00 0.00 3.41
2456 2794 6.137794 AGTCATCGGTTGAGTCATTACTAG 57.862 41.667 0.00 0.00 35.56 2.57
2465 2803 3.961480 TCATTGAGTCATCGGTTGAGT 57.039 42.857 0.00 0.00 40.84 3.41
2466 2804 3.806521 GGATCATTGAGTCATCGGTTGAG 59.193 47.826 0.00 0.00 34.17 3.02
2467 2805 3.197549 TGGATCATTGAGTCATCGGTTGA 59.802 43.478 0.00 0.00 0.00 3.18
2468 2806 3.534554 TGGATCATTGAGTCATCGGTTG 58.465 45.455 0.00 0.00 0.00 3.77
2469 2807 3.912496 TGGATCATTGAGTCATCGGTT 57.088 42.857 0.00 0.00 0.00 4.44
2470 2808 4.428294 AATGGATCATTGAGTCATCGGT 57.572 40.909 0.00 0.00 32.39 4.69
2770 3120 7.477494 AGTGAACTTAAACACACACATTAACC 58.523 34.615 0.00 0.00 39.18 2.85
2831 3181 6.852853 GCACCATAGAATTTATGAACGACATG 59.147 38.462 9.32 0.00 39.77 3.21
2927 3284 9.330063 GACAAATCTAGTGATATCATTTCCACA 57.670 33.333 9.02 0.00 31.70 4.17
3039 3418 9.770097 ATGATATACGACTCATCAGATTTTGTT 57.230 29.630 0.00 0.00 32.51 2.83
3040 3419 9.201127 CATGATATACGACTCATCAGATTTTGT 57.799 33.333 0.00 0.00 32.51 2.83
3041 3420 9.415544 TCATGATATACGACTCATCAGATTTTG 57.584 33.333 0.00 0.00 32.51 2.44
3042 3421 9.987272 TTCATGATATACGACTCATCAGATTTT 57.013 29.630 0.00 0.00 32.51 1.82
3043 3422 9.416794 GTTCATGATATACGACTCATCAGATTT 57.583 33.333 0.00 0.00 32.51 2.17
3044 3423 8.031864 GGTTCATGATATACGACTCATCAGATT 58.968 37.037 0.00 0.00 32.51 2.40
3045 3424 7.177392 TGGTTCATGATATACGACTCATCAGAT 59.823 37.037 0.00 0.00 32.51 2.90
3046 3425 6.490040 TGGTTCATGATATACGACTCATCAGA 59.510 38.462 0.00 0.00 32.51 3.27
3047 3426 6.681777 TGGTTCATGATATACGACTCATCAG 58.318 40.000 0.00 0.00 32.51 2.90
3048 3427 6.490040 TCTGGTTCATGATATACGACTCATCA 59.510 38.462 0.00 0.00 33.47 3.07
3049 3428 6.914259 TCTGGTTCATGATATACGACTCATC 58.086 40.000 0.00 0.00 29.74 2.92
3050 3429 6.901081 TCTGGTTCATGATATACGACTCAT 57.099 37.500 0.00 0.00 32.37 2.90
3051 3430 6.709018 TTCTGGTTCATGATATACGACTCA 57.291 37.500 0.00 0.00 0.00 3.41
3052 3431 7.359598 GCATTTCTGGTTCATGATATACGACTC 60.360 40.741 0.00 0.00 0.00 3.36
3053 3432 6.425114 GCATTTCTGGTTCATGATATACGACT 59.575 38.462 0.00 0.00 0.00 4.18
3054 3433 6.425114 AGCATTTCTGGTTCATGATATACGAC 59.575 38.462 0.00 0.00 0.00 4.34
3093 3490 6.956393 TGTGCGTAGAAATTTCGTAAAAAC 57.044 33.333 12.42 8.73 0.00 2.43
3195 3592 2.492088 CTCACACCGTGTCCAAGATAGA 59.508 50.000 0.00 0.00 34.79 1.98
3228 3625 3.499737 CAGGGCGCATCGGTGTTC 61.500 66.667 10.83 0.00 0.00 3.18
3335 3732 4.026804 CACCGATACATACGACTCAAAAGC 60.027 45.833 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.