Multiple sequence alignment - TraesCS5D01G526900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G526900 chr5D 100.000 2566 0 0 1 2566 544490407 544492972 0.000000e+00 4739.0
1 TraesCS5D01G526900 chr5D 94.096 271 14 2 194 463 31812408 31812139 6.610000e-111 411.0
2 TraesCS5D01G526900 chr5D 93.657 268 15 2 194 460 552969696 552969962 1.430000e-107 399.0
3 TraesCS5D01G526900 chr1A 91.280 1594 69 23 458 2033 569522243 569520702 0.000000e+00 2109.0
4 TraesCS5D01G526900 chr1A 91.217 1594 70 23 458 2033 569486950 569485409 0.000000e+00 2104.0
5 TraesCS5D01G526900 chr1A 91.223 1595 69 24 458 2033 569499439 569497897 0.000000e+00 2104.0
6 TraesCS5D01G526900 chr1A 92.563 1479 64 21 458 1918 569509973 569508523 0.000000e+00 2080.0
7 TraesCS5D01G526900 chr1A 88.850 287 29 3 2282 2566 569476685 569476400 1.460000e-92 350.0
8 TraesCS5D01G526900 chr1A 91.700 253 19 1 2030 2282 569520466 569520216 1.460000e-92 350.0
9 TraesCS5D01G526900 chr1A 91.304 253 20 1 2030 2282 569485173 569484923 6.800000e-91 344.0
10 TraesCS5D01G526900 chr1A 91.304 253 20 1 2030 2282 569497661 569497411 6.800000e-91 344.0
11 TraesCS5D01G526900 chr1A 98.039 51 1 0 152 202 569486998 569486948 3.520000e-14 89.8
12 TraesCS5D01G526900 chr1A 98.039 51 1 0 152 202 569499487 569499437 3.520000e-14 89.8
13 TraesCS5D01G526900 chr1A 98.039 51 1 0 152 202 569510021 569509971 3.520000e-14 89.8
14 TraesCS5D01G526900 chr1A 98.039 51 1 0 152 202 569522291 569522241 3.520000e-14 89.8
15 TraesCS5D01G526900 chr5B 91.163 1573 80 28 458 2022 686738887 686740408 0.000000e+00 2080.0
16 TraesCS5D01G526900 chr5B 89.652 1121 56 21 917 2022 686909426 686910501 0.000000e+00 1375.0
17 TraesCS5D01G526900 chr5B 89.451 929 47 20 1100 2022 686842167 686843050 0.000000e+00 1125.0
18 TraesCS5D01G526900 chr5B 96.209 554 20 1 2013 2566 686740544 686741096 0.000000e+00 905.0
19 TraesCS5D01G526900 chr5B 96.209 554 19 2 2013 2566 686843186 686843737 0.000000e+00 905.0
20 TraesCS5D01G526900 chr5B 86.064 409 21 10 522 929 686839857 686840230 8.550000e-110 407.0
21 TraesCS5D01G526900 chr5B 95.397 239 10 1 2013 2251 686910637 686910874 1.860000e-101 379.0
22 TraesCS5D01G526900 chr5B 86.290 124 17 0 21 144 598124554 598124431 4.450000e-28 135.0
23 TraesCS5D01G526900 chrUn 92.495 1479 66 23 458 1918 271849454 271848003 0.000000e+00 2074.0
24 TraesCS5D01G526900 chrUn 89.451 929 47 20 1100 2022 355072417 355071534 0.000000e+00 1125.0
25 TraesCS5D01G526900 chrUn 96.029 554 20 2 2013 2566 355071398 355070847 0.000000e+00 900.0
26 TraesCS5D01G526900 chrUn 98.039 51 1 0 152 202 271849502 271849452 3.520000e-14 89.8
27 TraesCS5D01G526900 chr4A 92.057 1473 74 18 458 1918 624430425 624431866 0.000000e+00 2032.0
28 TraesCS5D01G526900 chr4A 91.024 1426 72 22 621 2041 624596485 624597859 0.000000e+00 1873.0
29 TraesCS5D01G526900 chr4A 91.915 1274 66 14 651 1918 624461387 624462629 0.000000e+00 1748.0
30 TraesCS5D01G526900 chr4A 91.700 253 19 1 2030 2282 624598088 624598338 1.460000e-92 350.0
31 TraesCS5D01G526900 chr4A 87.838 296 33 3 2273 2566 624606794 624607088 6.800000e-91 344.0
32 TraesCS5D01G526900 chr4A 87.500 184 10 7 458 629 624596121 624596303 1.560000e-47 200.0
33 TraesCS5D01G526900 chr4A 88.636 132 15 0 12 143 669633088 669633219 7.350000e-36 161.0
34 TraesCS5D01G526900 chr4A 98.039 51 1 0 152 202 624596073 624596123 3.520000e-14 89.8
35 TraesCS5D01G526900 chr6D 95.785 261 10 1 200 460 160794029 160793770 1.100000e-113 420.0
36 TraesCS5D01G526900 chr6D 93.455 275 14 4 192 463 388990613 388990886 3.070000e-109 405.0
37 TraesCS5D01G526900 chr7D 94.776 268 12 2 194 460 445784698 445784964 1.420000e-112 416.0
38 TraesCS5D01G526900 chr2D 95.402 261 12 0 200 460 380974791 380975051 1.420000e-112 416.0
39 TraesCS5D01G526900 chr2D 93.238 281 15 4 195 474 204112949 204112672 6.610000e-111 411.0
40 TraesCS5D01G526900 chr2D 84.559 136 19 2 12 146 643175196 643175062 1.600000e-27 134.0
41 TraesCS5D01G526900 chr5A 95.402 261 10 2 200 459 642209959 642209700 5.110000e-112 414.0
42 TraesCS5D01G526900 chr7A 94.030 268 13 3 196 462 242645250 242645515 1.110000e-108 403.0
43 TraesCS5D01G526900 chr7A 86.260 131 18 0 22 152 62729894 62729764 2.660000e-30 143.0
44 TraesCS5D01G526900 chr1D 87.591 137 14 3 12 147 342166627 342166493 3.420000e-34 156.0
45 TraesCS5D01G526900 chr1D 84.722 144 20 2 12 154 485504667 485504809 2.660000e-30 143.0
46 TraesCS5D01G526900 chr3A 87.692 130 16 0 22 151 572150455 572150584 4.420000e-33 152.0
47 TraesCS5D01G526900 chr1B 84.615 143 21 1 12 153 32065185 32065327 9.570000e-30 141.0
48 TraesCS5D01G526900 chr2A 86.400 125 17 0 22 146 672973199 672973075 1.240000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G526900 chr5D 544490407 544492972 2565 False 4739.000000 4739 100.000000 1 2566 1 chr5D.!!$F1 2565
1 TraesCS5D01G526900 chr1A 569508523 569510021 1498 True 1084.900000 2080 95.301000 152 1918 2 chr1A.!!$R4 1766
2 TraesCS5D01G526900 chr1A 569520216 569522291 2075 True 849.600000 2109 93.673000 152 2282 3 chr1A.!!$R5 2130
3 TraesCS5D01G526900 chr1A 569484923 569486998 2075 True 845.933333 2104 93.520000 152 2282 3 chr1A.!!$R2 2130
4 TraesCS5D01G526900 chr1A 569497411 569499487 2076 True 845.933333 2104 93.522000 152 2282 3 chr1A.!!$R3 2130
5 TraesCS5D01G526900 chr5B 686738887 686741096 2209 False 1492.500000 2080 93.686000 458 2566 2 chr5B.!!$F1 2108
6 TraesCS5D01G526900 chr5B 686909426 686910874 1448 False 877.000000 1375 92.524500 917 2251 2 chr5B.!!$F3 1334
7 TraesCS5D01G526900 chr5B 686839857 686843737 3880 False 812.333333 1125 90.574667 522 2566 3 chr5B.!!$F2 2044
8 TraesCS5D01G526900 chrUn 271848003 271849502 1499 True 1081.900000 2074 95.267000 152 1918 2 chrUn.!!$R1 1766
9 TraesCS5D01G526900 chrUn 355070847 355072417 1570 True 1012.500000 1125 92.740000 1100 2566 2 chrUn.!!$R2 1466
10 TraesCS5D01G526900 chr4A 624430425 624431866 1441 False 2032.000000 2032 92.057000 458 1918 1 chr4A.!!$F1 1460
11 TraesCS5D01G526900 chr4A 624461387 624462629 1242 False 1748.000000 1748 91.915000 651 1918 1 chr4A.!!$F2 1267
12 TraesCS5D01G526900 chr4A 624596073 624598338 2265 False 628.200000 1873 92.065750 152 2282 4 chr4A.!!$F5 2130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.030235 GTTGAGGGTTCACGGTTTGC 59.970 55.0 0.00 0.0 31.71 3.68 F
96 97 0.313987 GCCGGTTTTGAAGTTGAGGG 59.686 55.0 1.90 0.0 0.00 4.30 F
1194 3182 0.030235 CTCACCACTGTCGACGTTCA 59.970 55.0 11.62 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 3159 0.959553 ATCCAGTGAACGTCGACAGT 59.040 50.000 17.16 11.57 0.00 3.55 R
1538 3529 2.171027 AGTTACGACTTTGTTGTCCCCA 59.829 45.455 0.00 0.00 31.92 4.96 R
2306 4688 0.460284 GCGGTAGTCAGTCATGGTGG 60.460 60.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.563724 ACTTAAAAGTGGTATGAGGGACTAA 57.436 36.000 0.00 0.00 36.83 2.24
41 42 7.981142 ACTTAAAAGTGGTATGAGGGACTAAA 58.019 34.615 0.00 0.00 36.83 1.85
42 43 7.881751 ACTTAAAAGTGGTATGAGGGACTAAAC 59.118 37.037 0.00 0.00 36.83 2.01
43 44 6.449830 AAAAGTGGTATGAGGGACTAAACT 57.550 37.500 0.00 0.00 41.55 2.66
44 45 6.449830 AAAGTGGTATGAGGGACTAAACTT 57.550 37.500 0.00 0.00 41.55 2.66
45 46 7.563724 AAAGTGGTATGAGGGACTAAACTTA 57.436 36.000 0.00 0.00 41.55 2.24
46 47 7.750947 AAGTGGTATGAGGGACTAAACTTAT 57.249 36.000 0.00 0.00 41.55 1.73
47 48 7.362802 AGTGGTATGAGGGACTAAACTTATC 57.637 40.000 0.00 0.00 41.55 1.75
48 49 6.326843 AGTGGTATGAGGGACTAAACTTATCC 59.673 42.308 0.00 0.00 41.55 2.59
49 50 5.303589 TGGTATGAGGGACTAAACTTATCCG 59.696 44.000 0.00 0.00 41.55 4.18
50 51 4.957684 ATGAGGGACTAAACTTATCCGG 57.042 45.455 0.00 0.00 41.55 5.14
51 52 3.716431 TGAGGGACTAAACTTATCCGGT 58.284 45.455 0.00 0.00 41.55 5.28
52 53 4.098894 TGAGGGACTAAACTTATCCGGTT 58.901 43.478 0.00 0.00 41.55 4.44
53 54 4.533311 TGAGGGACTAAACTTATCCGGTTT 59.467 41.667 0.00 0.00 41.55 3.27
54 55 5.013391 TGAGGGACTAAACTTATCCGGTTTT 59.987 40.000 0.00 0.00 41.55 2.43
55 56 6.213195 TGAGGGACTAAACTTATCCGGTTTTA 59.787 38.462 0.00 0.00 41.55 1.52
56 57 7.092757 TGAGGGACTAAACTTATCCGGTTTTAT 60.093 37.037 0.00 0.00 41.55 1.40
57 58 8.322905 AGGGACTAAACTTATCCGGTTTTATA 57.677 34.615 0.00 0.00 36.02 0.98
58 59 8.771286 AGGGACTAAACTTATCCGGTTTTATAA 58.229 33.333 0.00 0.00 36.02 0.98
59 60 9.049523 GGGACTAAACTTATCCGGTTTTATAAG 57.950 37.037 15.58 15.58 40.16 1.73
60 61 9.605275 GGACTAAACTTATCCGGTTTTATAAGT 57.395 33.333 16.62 16.62 46.06 2.24
66 67 7.052248 ACTTATCCGGTTTTATAAGTTGAGGG 58.948 38.462 16.62 0.00 43.18 4.30
67 68 4.914177 TCCGGTTTTATAAGTTGAGGGT 57.086 40.909 0.00 0.00 0.00 4.34
68 69 5.245584 TCCGGTTTTATAAGTTGAGGGTT 57.754 39.130 0.00 0.00 0.00 4.11
69 70 5.247862 TCCGGTTTTATAAGTTGAGGGTTC 58.752 41.667 0.00 0.00 0.00 3.62
70 71 5.005094 CCGGTTTTATAAGTTGAGGGTTCA 58.995 41.667 0.00 0.00 0.00 3.18
71 72 5.106436 CCGGTTTTATAAGTTGAGGGTTCAC 60.106 44.000 0.00 0.00 31.71 3.18
72 73 5.390145 CGGTTTTATAAGTTGAGGGTTCACG 60.390 44.000 0.00 0.00 31.71 4.35
73 74 5.106436 GGTTTTATAAGTTGAGGGTTCACGG 60.106 44.000 0.00 0.00 31.71 4.94
74 75 4.895668 TTATAAGTTGAGGGTTCACGGT 57.104 40.909 0.00 0.00 31.71 4.83
75 76 3.782656 ATAAGTTGAGGGTTCACGGTT 57.217 42.857 0.00 0.00 31.71 4.44
76 77 2.430248 AAGTTGAGGGTTCACGGTTT 57.570 45.000 0.00 0.00 31.71 3.27
77 78 1.675552 AGTTGAGGGTTCACGGTTTG 58.324 50.000 0.00 0.00 31.71 2.93
78 79 0.030235 GTTGAGGGTTCACGGTTTGC 59.970 55.000 0.00 0.00 31.71 3.68
79 80 1.104577 TTGAGGGTTCACGGTTTGCC 61.105 55.000 0.00 0.00 31.71 4.52
91 92 2.303163 GGTTTGCCGGTTTTGAAGTT 57.697 45.000 1.90 0.00 0.00 2.66
92 93 1.930503 GGTTTGCCGGTTTTGAAGTTG 59.069 47.619 1.90 0.00 0.00 3.16
93 94 2.417515 GGTTTGCCGGTTTTGAAGTTGA 60.418 45.455 1.90 0.00 0.00 3.18
94 95 2.857748 GTTTGCCGGTTTTGAAGTTGAG 59.142 45.455 1.90 0.00 0.00 3.02
95 96 1.028905 TGCCGGTTTTGAAGTTGAGG 58.971 50.000 1.90 0.00 0.00 3.86
96 97 0.313987 GCCGGTTTTGAAGTTGAGGG 59.686 55.000 1.90 0.00 0.00 4.30
97 98 1.975660 CCGGTTTTGAAGTTGAGGGA 58.024 50.000 0.00 0.00 0.00 4.20
98 99 1.607148 CCGGTTTTGAAGTTGAGGGAC 59.393 52.381 0.00 0.00 0.00 4.46
100 101 3.495453 CCGGTTTTGAAGTTGAGGGACTA 60.495 47.826 0.00 0.00 41.55 2.59
101 102 4.324267 CGGTTTTGAAGTTGAGGGACTAT 58.676 43.478 0.00 0.00 41.55 2.12
102 103 4.760204 CGGTTTTGAAGTTGAGGGACTATT 59.240 41.667 0.00 0.00 41.55 1.73
103 104 5.240844 CGGTTTTGAAGTTGAGGGACTATTT 59.759 40.000 0.00 0.00 41.55 1.40
104 105 6.567891 CGGTTTTGAAGTTGAGGGACTATTTC 60.568 42.308 0.00 0.00 41.55 2.17
105 106 6.490381 GGTTTTGAAGTTGAGGGACTATTTCT 59.510 38.462 0.00 0.00 41.55 2.52
106 107 7.014326 GGTTTTGAAGTTGAGGGACTATTTCTT 59.986 37.037 0.00 0.00 41.55 2.52
107 108 8.414003 GTTTTGAAGTTGAGGGACTATTTCTTT 58.586 33.333 0.00 0.00 41.55 2.52
108 109 9.635404 TTTTGAAGTTGAGGGACTATTTCTTTA 57.365 29.630 0.00 0.00 41.55 1.85
109 110 8.617290 TTGAAGTTGAGGGACTATTTCTTTAC 57.383 34.615 0.00 0.00 41.55 2.01
110 111 7.974504 TGAAGTTGAGGGACTATTTCTTTACT 58.025 34.615 0.00 0.00 41.55 2.24
111 112 8.437575 TGAAGTTGAGGGACTATTTCTTTACTT 58.562 33.333 0.00 0.00 41.55 2.24
112 113 9.286170 GAAGTTGAGGGACTATTTCTTTACTTT 57.714 33.333 0.00 0.00 41.55 2.66
113 114 8.850007 AGTTGAGGGACTATTTCTTTACTTTC 57.150 34.615 0.00 0.00 41.55 2.62
114 115 8.437575 AGTTGAGGGACTATTTCTTTACTTTCA 58.562 33.333 0.00 0.00 41.55 2.69
115 116 9.063615 GTTGAGGGACTATTTCTTTACTTTCAA 57.936 33.333 0.00 0.00 41.55 2.69
116 117 9.635404 TTGAGGGACTATTTCTTTACTTTCAAA 57.365 29.630 0.00 0.00 41.55 2.69
117 118 9.635404 TGAGGGACTATTTCTTTACTTTCAAAA 57.365 29.630 0.00 0.00 41.55 2.44
119 120 9.862149 AGGGACTATTTCTTTACTTTCAAAAGA 57.138 29.630 9.39 0.00 37.85 2.52
127 128 7.568199 TCTTTACTTTCAAAAGAGTTGAGGG 57.432 36.000 9.39 0.00 37.89 4.30
128 129 7.343357 TCTTTACTTTCAAAAGAGTTGAGGGA 58.657 34.615 9.39 0.00 37.89 4.20
129 130 7.998964 TCTTTACTTTCAAAAGAGTTGAGGGAT 59.001 33.333 9.39 0.00 37.89 3.85
130 131 7.510549 TTACTTTCAAAAGAGTTGAGGGATG 57.489 36.000 9.39 0.00 39.31 3.51
131 132 4.829492 ACTTTCAAAAGAGTTGAGGGATGG 59.171 41.667 9.39 0.00 39.31 3.51
132 133 4.722526 TTCAAAAGAGTTGAGGGATGGA 57.277 40.909 0.00 0.00 0.00 3.41
133 134 4.722526 TCAAAAGAGTTGAGGGATGGAA 57.277 40.909 0.00 0.00 0.00 3.53
134 135 5.060427 TCAAAAGAGTTGAGGGATGGAAA 57.940 39.130 0.00 0.00 0.00 3.13
135 136 5.454062 TCAAAAGAGTTGAGGGATGGAAAA 58.546 37.500 0.00 0.00 0.00 2.29
136 137 6.077322 TCAAAAGAGTTGAGGGATGGAAAAT 58.923 36.000 0.00 0.00 0.00 1.82
137 138 7.237982 TCAAAAGAGTTGAGGGATGGAAAATA 58.762 34.615 0.00 0.00 0.00 1.40
138 139 7.895429 TCAAAAGAGTTGAGGGATGGAAAATAT 59.105 33.333 0.00 0.00 0.00 1.28
139 140 9.189156 CAAAAGAGTTGAGGGATGGAAAATATA 57.811 33.333 0.00 0.00 0.00 0.86
140 141 8.753497 AAAGAGTTGAGGGATGGAAAATATAC 57.247 34.615 0.00 0.00 0.00 1.47
141 142 7.698163 AGAGTTGAGGGATGGAAAATATACT 57.302 36.000 0.00 0.00 0.00 2.12
142 143 8.107196 AGAGTTGAGGGATGGAAAATATACTT 57.893 34.615 0.00 0.00 0.00 2.24
143 144 9.225682 AGAGTTGAGGGATGGAAAATATACTTA 57.774 33.333 0.00 0.00 0.00 2.24
148 149 9.621239 TGAGGGATGGAAAATATACTTATCTCT 57.379 33.333 0.00 0.00 0.00 3.10
196 197 2.771089 CACAAGCAGCAAGTTCTCCTA 58.229 47.619 0.00 0.00 0.00 2.94
199 200 5.121811 CACAAGCAGCAAGTTCTCCTATAT 58.878 41.667 0.00 0.00 0.00 0.86
200 201 6.283694 CACAAGCAGCAAGTTCTCCTATATA 58.716 40.000 0.00 0.00 0.00 0.86
201 202 6.201806 CACAAGCAGCAAGTTCTCCTATATAC 59.798 42.308 0.00 0.00 0.00 1.47
202 203 6.098982 ACAAGCAGCAAGTTCTCCTATATACT 59.901 38.462 0.00 0.00 0.00 2.12
203 204 6.339587 AGCAGCAAGTTCTCCTATATACTC 57.660 41.667 0.00 0.00 0.00 2.59
204 205 5.245075 AGCAGCAAGTTCTCCTATATACTCC 59.755 44.000 0.00 0.00 0.00 3.85
205 206 5.567823 GCAGCAAGTTCTCCTATATACTCCC 60.568 48.000 0.00 0.00 0.00 4.30
206 207 5.046950 CAGCAAGTTCTCCTATATACTCCCC 60.047 48.000 0.00 0.00 0.00 4.81
207 208 4.223255 GCAAGTTCTCCTATATACTCCCCC 59.777 50.000 0.00 0.00 0.00 5.40
224 225 1.808343 CCCCCGTTTCTTTTTAGTCCG 59.192 52.381 0.00 0.00 0.00 4.79
225 226 1.198408 CCCCGTTTCTTTTTAGTCCGC 59.802 52.381 0.00 0.00 0.00 5.54
226 227 1.874872 CCCGTTTCTTTTTAGTCCGCA 59.125 47.619 0.00 0.00 0.00 5.69
227 228 2.486592 CCCGTTTCTTTTTAGTCCGCAT 59.513 45.455 0.00 0.00 0.00 4.73
228 229 3.685756 CCCGTTTCTTTTTAGTCCGCATA 59.314 43.478 0.00 0.00 0.00 3.14
229 230 4.334481 CCCGTTTCTTTTTAGTCCGCATAT 59.666 41.667 0.00 0.00 0.00 1.78
230 231 5.524646 CCCGTTTCTTTTTAGTCCGCATATA 59.475 40.000 0.00 0.00 0.00 0.86
231 232 6.037391 CCCGTTTCTTTTTAGTCCGCATATAA 59.963 38.462 0.00 0.00 0.00 0.98
232 233 7.123830 CCGTTTCTTTTTAGTCCGCATATAAG 58.876 38.462 0.00 0.00 0.00 1.73
233 234 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
234 235 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
235 236 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
236 237 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
237 238 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
238 239 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
239 240 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
240 241 4.230745 AGTCCGCATATAAGGTTTGGTT 57.769 40.909 0.00 0.00 0.00 3.67
241 242 5.362105 AGTCCGCATATAAGGTTTGGTTA 57.638 39.130 0.00 0.00 0.00 2.85
242 243 5.747342 AGTCCGCATATAAGGTTTGGTTAA 58.253 37.500 0.00 0.00 0.00 2.01
243 244 6.181908 AGTCCGCATATAAGGTTTGGTTAAA 58.818 36.000 0.00 0.00 0.00 1.52
244 245 6.317893 AGTCCGCATATAAGGTTTGGTTAAAG 59.682 38.462 0.00 0.00 0.00 1.85
245 246 6.094464 GTCCGCATATAAGGTTTGGTTAAAGT 59.906 38.462 0.00 0.00 0.00 2.66
246 247 6.316890 TCCGCATATAAGGTTTGGTTAAAGTC 59.683 38.462 0.00 0.00 0.00 3.01
247 248 6.094325 CCGCATATAAGGTTTGGTTAAAGTCA 59.906 38.462 0.00 0.00 0.00 3.41
248 249 7.362229 CCGCATATAAGGTTTGGTTAAAGTCAA 60.362 37.037 0.00 0.00 0.00 3.18
249 250 7.696453 CGCATATAAGGTTTGGTTAAAGTCAAG 59.304 37.037 0.00 0.00 0.00 3.02
250 251 7.488150 GCATATAAGGTTTGGTTAAAGTCAAGC 59.512 37.037 0.00 0.00 0.00 4.01
251 252 8.739972 CATATAAGGTTTGGTTAAAGTCAAGCT 58.260 33.333 0.00 0.00 0.00 3.74
252 253 5.932619 AAGGTTTGGTTAAAGTCAAGCTT 57.067 34.783 0.00 0.00 39.52 3.74
254 255 5.660460 AGGTTTGGTTAAAGTCAAGCTTTG 58.340 37.500 0.00 0.00 46.07 2.77
255 256 5.186992 AGGTTTGGTTAAAGTCAAGCTTTGT 59.813 36.000 0.00 0.00 46.07 2.83
256 257 5.290885 GGTTTGGTTAAAGTCAAGCTTTGTG 59.709 40.000 0.00 0.00 46.07 3.33
257 258 4.647424 TGGTTAAAGTCAAGCTTTGTGG 57.353 40.909 0.00 0.00 46.07 4.17
258 259 4.274147 TGGTTAAAGTCAAGCTTTGTGGA 58.726 39.130 0.00 0.00 46.07 4.02
259 260 4.338118 TGGTTAAAGTCAAGCTTTGTGGAG 59.662 41.667 0.00 0.00 46.07 3.86
260 261 4.338400 GGTTAAAGTCAAGCTTTGTGGAGT 59.662 41.667 0.00 0.00 46.07 3.85
261 262 5.163550 GGTTAAAGTCAAGCTTTGTGGAGTT 60.164 40.000 0.00 0.00 46.07 3.01
262 263 6.330278 GTTAAAGTCAAGCTTTGTGGAGTTT 58.670 36.000 16.87 16.87 46.07 2.66
263 264 4.376340 AAGTCAAGCTTTGTGGAGTTTG 57.624 40.909 0.00 0.00 38.67 2.93
264 265 3.620488 AGTCAAGCTTTGTGGAGTTTGA 58.380 40.909 0.00 0.91 42.23 2.69
266 267 3.620488 TCAAGCTTTGTGGAGTTTGACT 58.380 40.909 0.00 0.00 40.46 3.41
267 268 4.776349 TCAAGCTTTGTGGAGTTTGACTA 58.224 39.130 0.00 0.00 40.46 2.59
268 269 5.189928 TCAAGCTTTGTGGAGTTTGACTAA 58.810 37.500 0.00 0.00 40.46 2.24
269 270 5.065988 TCAAGCTTTGTGGAGTTTGACTAAC 59.934 40.000 0.00 0.00 40.46 2.34
271 272 5.193679 AGCTTTGTGGAGTTTGACTAACTT 58.806 37.500 3.78 0.00 47.00 2.66
272 273 5.652452 AGCTTTGTGGAGTTTGACTAACTTT 59.348 36.000 3.78 0.00 47.00 2.66
273 274 6.826741 AGCTTTGTGGAGTTTGACTAACTTTA 59.173 34.615 3.78 0.00 47.00 1.85
274 275 7.502561 AGCTTTGTGGAGTTTGACTAACTTTAT 59.497 33.333 3.78 0.00 47.00 1.40
275 276 8.780249 GCTTTGTGGAGTTTGACTAACTTTATA 58.220 33.333 3.78 0.00 47.00 0.98
326 327 9.223099 TGAAATCAATATTATCAGATGCATCGT 57.777 29.630 20.67 13.22 0.00 3.73
327 328 9.486857 GAAATCAATATTATCAGATGCATCGTG 57.513 33.333 20.67 17.83 0.00 4.35
328 329 8.782339 AATCAATATTATCAGATGCATCGTGA 57.218 30.769 20.67 21.83 0.00 4.35
329 330 8.782339 ATCAATATTATCAGATGCATCGTGAA 57.218 30.769 23.55 16.39 0.00 3.18
330 331 8.606040 TCAATATTATCAGATGCATCGTGAAA 57.394 30.769 23.55 19.39 0.00 2.69
331 332 8.498358 TCAATATTATCAGATGCATCGTGAAAC 58.502 33.333 23.55 2.73 0.00 2.78
406 407 8.715191 ATAGAAATTTTGTCAAACTTTGTGCA 57.285 26.923 15.89 2.09 0.00 4.57
407 408 7.064060 AGAAATTTTGTCAAACTTTGTGCAG 57.936 32.000 15.89 0.00 0.00 4.41
408 409 6.650390 AGAAATTTTGTCAAACTTTGTGCAGT 59.350 30.769 15.89 0.00 0.00 4.40
409 410 6.799926 AATTTTGTCAAACTTTGTGCAGTT 57.200 29.167 0.00 0.00 38.74 3.16
410 411 6.799926 ATTTTGTCAAACTTTGTGCAGTTT 57.200 29.167 0.00 0.00 46.00 2.66
417 418 5.844301 AAACTTTGTGCAGTTTGACTTTG 57.156 34.783 1.37 0.00 43.88 2.77
418 419 4.782019 ACTTTGTGCAGTTTGACTTTGA 57.218 36.364 0.00 0.00 0.00 2.69
419 420 4.485163 ACTTTGTGCAGTTTGACTTTGAC 58.515 39.130 0.00 0.00 0.00 3.18
420 421 3.502191 TTGTGCAGTTTGACTTTGACC 57.498 42.857 0.00 0.00 0.00 4.02
421 422 1.748493 TGTGCAGTTTGACTTTGACCC 59.252 47.619 0.00 0.00 0.00 4.46
422 423 1.748493 GTGCAGTTTGACTTTGACCCA 59.252 47.619 0.00 0.00 0.00 4.51
423 424 2.165437 GTGCAGTTTGACTTTGACCCAA 59.835 45.455 0.00 0.00 0.00 4.12
424 425 3.030291 TGCAGTTTGACTTTGACCCAAT 58.970 40.909 0.00 0.00 0.00 3.16
425 426 3.068024 TGCAGTTTGACTTTGACCCAATC 59.932 43.478 0.00 0.00 0.00 2.67
426 427 3.319122 GCAGTTTGACTTTGACCCAATCT 59.681 43.478 0.00 0.00 0.00 2.40
427 428 4.202151 GCAGTTTGACTTTGACCCAATCTT 60.202 41.667 0.00 0.00 0.00 2.40
428 429 5.009610 GCAGTTTGACTTTGACCCAATCTTA 59.990 40.000 0.00 0.00 0.00 2.10
429 430 6.294731 GCAGTTTGACTTTGACCCAATCTTAT 60.295 38.462 0.00 0.00 0.00 1.73
430 431 7.094377 GCAGTTTGACTTTGACCCAATCTTATA 60.094 37.037 0.00 0.00 0.00 0.98
431 432 8.960591 CAGTTTGACTTTGACCCAATCTTATAT 58.039 33.333 0.00 0.00 0.00 0.86
432 433 8.960591 AGTTTGACTTTGACCCAATCTTATATG 58.039 33.333 0.00 0.00 0.00 1.78
433 434 6.942532 TGACTTTGACCCAATCTTATATGC 57.057 37.500 0.00 0.00 0.00 3.14
434 435 5.527214 TGACTTTGACCCAATCTTATATGCG 59.473 40.000 0.00 0.00 0.00 4.73
435 436 4.821805 ACTTTGACCCAATCTTATATGCGG 59.178 41.667 0.00 0.00 0.00 5.69
436 437 4.698201 TTGACCCAATCTTATATGCGGA 57.302 40.909 0.00 0.00 0.00 5.54
437 438 4.271696 TGACCCAATCTTATATGCGGAG 57.728 45.455 0.00 0.00 0.00 4.63
438 439 3.646162 TGACCCAATCTTATATGCGGAGT 59.354 43.478 0.00 0.00 0.00 3.85
439 440 4.836175 TGACCCAATCTTATATGCGGAGTA 59.164 41.667 0.00 0.00 0.00 2.59
440 441 5.305902 TGACCCAATCTTATATGCGGAGTAA 59.694 40.000 0.00 0.00 0.00 2.24
441 442 6.182507 ACCCAATCTTATATGCGGAGTAAA 57.817 37.500 0.00 0.00 0.00 2.01
442 443 6.597562 ACCCAATCTTATATGCGGAGTAAAA 58.402 36.000 0.00 0.00 0.00 1.52
443 444 7.057894 ACCCAATCTTATATGCGGAGTAAAAA 58.942 34.615 0.00 0.00 0.00 1.94
444 445 7.228706 ACCCAATCTTATATGCGGAGTAAAAAG 59.771 37.037 0.00 0.00 0.00 2.27
445 446 7.444183 CCCAATCTTATATGCGGAGTAAAAAGA 59.556 37.037 0.00 0.00 0.00 2.52
446 447 8.836413 CCAATCTTATATGCGGAGTAAAAAGAA 58.164 33.333 0.00 0.00 0.00 2.52
449 450 8.780846 TCTTATATGCGGAGTAAAAAGAAACA 57.219 30.769 0.00 0.00 0.00 2.83
450 451 8.879759 TCTTATATGCGGAGTAAAAAGAAACAG 58.120 33.333 0.00 0.00 0.00 3.16
451 452 8.780846 TTATATGCGGAGTAAAAAGAAACAGA 57.219 30.769 0.00 0.00 0.00 3.41
452 453 5.613358 ATGCGGAGTAAAAAGAAACAGAG 57.387 39.130 0.00 0.00 0.00 3.35
453 454 3.813166 TGCGGAGTAAAAAGAAACAGAGG 59.187 43.478 0.00 0.00 0.00 3.69
454 455 3.188667 GCGGAGTAAAAAGAAACAGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
455 456 4.638304 CGGAGTAAAAAGAAACAGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
456 457 4.691216 CGGAGTAAAAAGAAACAGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
523 535 4.318831 GGAAGATCATTTTGTCCGCGTATC 60.319 45.833 4.92 0.00 0.00 2.24
551 563 8.283291 AGTTTGTTCTCGAAGCTAATACTTTTG 58.717 33.333 0.00 0.00 0.00 2.44
596 610 6.369615 GCCATGAAAGTCATTTGCATTAGTTT 59.630 34.615 0.00 0.00 34.28 2.66
609 623 9.807649 ATTTGCATTAGTTTGGCTTATTAAGAG 57.192 29.630 7.63 0.00 0.00 2.85
617 632 7.159372 AGTTTGGCTTATTAAGAGAAGTCGAA 58.841 34.615 7.63 0.00 31.47 3.71
829 1035 3.895232 ATTGTGGCCACTGACTAGTAG 57.105 47.619 34.75 0.00 34.74 2.57
1181 3159 0.178903 ACTACTCAAGGGCCTCACCA 60.179 55.000 6.46 0.00 42.05 4.17
1182 3160 0.250513 CTACTCAAGGGCCTCACCAC 59.749 60.000 6.46 0.00 42.05 4.16
1191 3179 3.039988 CCTCACCACTGTCGACGT 58.960 61.111 11.62 9.08 0.00 4.34
1192 3180 1.362717 CCTCACCACTGTCGACGTT 59.637 57.895 11.62 0.00 0.00 3.99
1193 3181 0.663568 CCTCACCACTGTCGACGTTC 60.664 60.000 11.62 0.00 0.00 3.95
1194 3182 0.030235 CTCACCACTGTCGACGTTCA 59.970 55.000 11.62 0.00 0.00 3.18
1195 3183 0.248743 TCACCACTGTCGACGTTCAC 60.249 55.000 11.62 0.00 0.00 3.18
1196 3184 0.248907 CACCACTGTCGACGTTCACT 60.249 55.000 11.62 0.00 0.00 3.41
1197 3185 0.248907 ACCACTGTCGACGTTCACTG 60.249 55.000 11.62 0.00 0.00 3.66
1198 3186 0.939577 CCACTGTCGACGTTCACTGG 60.940 60.000 11.62 4.99 0.00 4.00
1199 3187 0.030235 CACTGTCGACGTTCACTGGA 59.970 55.000 11.62 0.00 0.00 3.86
1200 3188 0.959553 ACTGTCGACGTTCACTGGAT 59.040 50.000 11.62 0.00 0.00 3.41
1201 3189 2.095415 CACTGTCGACGTTCACTGGATA 60.095 50.000 11.62 0.00 0.00 2.59
1202 3190 2.753452 ACTGTCGACGTTCACTGGATAT 59.247 45.455 11.62 0.00 0.00 1.63
1203 3191 3.943381 ACTGTCGACGTTCACTGGATATA 59.057 43.478 11.62 0.00 0.00 0.86
1204 3192 4.035324 ACTGTCGACGTTCACTGGATATAG 59.965 45.833 11.62 0.00 0.00 1.31
1205 3193 3.242969 TGTCGACGTTCACTGGATATAGC 60.243 47.826 11.62 0.00 0.00 2.97
1206 3194 3.003482 GTCGACGTTCACTGGATATAGCT 59.997 47.826 0.00 0.00 0.00 3.32
1207 3195 3.630769 TCGACGTTCACTGGATATAGCTT 59.369 43.478 0.00 0.00 0.00 3.74
1208 3196 4.097437 TCGACGTTCACTGGATATAGCTTT 59.903 41.667 0.00 0.00 0.00 3.51
1209 3197 4.441415 CGACGTTCACTGGATATAGCTTTC 59.559 45.833 0.00 0.00 0.00 2.62
1210 3198 5.339008 ACGTTCACTGGATATAGCTTTCA 57.661 39.130 0.00 0.00 0.00 2.69
1211 3199 5.109903 ACGTTCACTGGATATAGCTTTCAC 58.890 41.667 0.00 0.00 0.00 3.18
1212 3200 5.105310 ACGTTCACTGGATATAGCTTTCACT 60.105 40.000 0.00 0.00 0.00 3.41
1213 3201 6.096423 ACGTTCACTGGATATAGCTTTCACTA 59.904 38.462 0.00 0.00 0.00 2.74
1214 3202 6.978659 CGTTCACTGGATATAGCTTTCACTAA 59.021 38.462 0.00 0.00 0.00 2.24
1215 3203 7.043325 CGTTCACTGGATATAGCTTTCACTAAC 60.043 40.741 0.00 0.00 0.00 2.34
1216 3204 7.661536 TCACTGGATATAGCTTTCACTAACT 57.338 36.000 0.00 0.00 0.00 2.24
1237 3225 6.986904 ACTTATAGCTTTCACTAACTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
1278 3266 4.965119 AGAAGAACACTCCAACAACAAC 57.035 40.909 0.00 0.00 0.00 3.32
1279 3267 4.331968 AGAAGAACACTCCAACAACAACA 58.668 39.130 0.00 0.00 0.00 3.33
1280 3268 4.764823 AGAAGAACACTCCAACAACAACAA 59.235 37.500 0.00 0.00 0.00 2.83
1368 3357 0.992072 CGGCAACACTGTCGTATCTG 59.008 55.000 0.00 0.00 45.67 2.90
1427 3418 0.738975 CATCTGGGAGCAGCAATGTG 59.261 55.000 0.00 0.00 0.00 3.21
1481 3472 3.486875 GCAACAATACTGTATCCGGCAAC 60.487 47.826 0.00 0.00 33.45 4.17
1532 3523 2.375174 TGTATCAGGGAGCAACCAAGTT 59.625 45.455 0.00 0.00 41.20 2.66
1538 3529 1.680338 GGAGCAACCAAGTTGTGTCT 58.320 50.000 9.07 0.00 44.40 3.41
1575 3569 4.401202 TCGTAACTGGCTAATGATCTGTCA 59.599 41.667 0.00 0.00 39.04 3.58
1603 3597 1.000896 ATTTCGGCTTCCCTGGTGG 60.001 57.895 0.00 0.00 0.00 4.61
1619 3615 2.029623 GGTGGAGCTCATACGTCCTTA 58.970 52.381 17.19 0.00 0.00 2.69
1634 3630 4.525487 ACGTCCTTATCCAAGTTCAGTGTA 59.475 41.667 0.00 0.00 0.00 2.90
1653 3649 3.508402 TGTAGCTCACGATTACTTGGTGA 59.492 43.478 0.00 0.00 38.29 4.02
1688 3684 6.318648 TGTTTGGAACTTCATGGATATAGCAC 59.681 38.462 0.00 0.00 0.00 4.40
1918 3916 8.575589 CAATGTCATCTAGCTATACACTTCTCT 58.424 37.037 0.00 0.00 0.00 3.10
1919 3917 9.800572 AATGTCATCTAGCTATACACTTCTCTA 57.199 33.333 0.00 0.00 0.00 2.43
1920 3918 8.840833 TGTCATCTAGCTATACACTTCTCTAG 57.159 38.462 0.00 0.00 0.00 2.43
1921 3919 8.433599 TGTCATCTAGCTATACACTTCTCTAGT 58.566 37.037 0.00 0.00 37.68 2.57
1922 3920 8.932791 GTCATCTAGCTATACACTTCTCTAGTC 58.067 40.741 0.00 0.00 33.85 2.59
1923 3921 8.652290 TCATCTAGCTATACACTTCTCTAGTCA 58.348 37.037 0.00 0.00 33.85 3.41
1924 3922 9.448438 CATCTAGCTATACACTTCTCTAGTCAT 57.552 37.037 0.00 0.00 33.85 3.06
1925 3923 9.667107 ATCTAGCTATACACTTCTCTAGTCATC 57.333 37.037 0.00 0.00 33.85 2.92
1926 3924 8.876181 TCTAGCTATACACTTCTCTAGTCATCT 58.124 37.037 0.00 0.00 33.85 2.90
1929 3927 7.606456 AGCTATACACTTCTCTAGTCATCTAGC 59.394 40.741 0.00 0.00 42.28 3.42
1930 3928 7.606456 GCTATACACTTCTCTAGTCATCTAGCT 59.394 40.741 0.00 0.00 42.28 3.32
1934 3932 8.842358 ACACTTCTCTAGTCATCTAGCTATAC 57.158 38.462 0.00 0.00 42.28 1.47
1935 3933 8.433599 ACACTTCTCTAGTCATCTAGCTATACA 58.566 37.037 0.00 0.00 42.28 2.29
1936 3934 8.717821 CACTTCTCTAGTCATCTAGCTATACAC 58.282 40.741 0.00 0.00 42.28 2.90
1937 3935 8.656806 ACTTCTCTAGTCATCTAGCTATACACT 58.343 37.037 0.00 0.00 42.28 3.55
1938 3936 9.502091 CTTCTCTAGTCATCTAGCTATACACTT 57.498 37.037 0.00 0.00 42.28 3.16
1939 3937 9.496873 TTCTCTAGTCATCTAGCTATACACTTC 57.503 37.037 0.00 0.00 42.28 3.01
1940 3938 8.876181 TCTCTAGTCATCTAGCTATACACTTCT 58.124 37.037 0.00 0.00 42.28 2.85
1941 3939 9.151471 CTCTAGTCATCTAGCTATACACTTCTC 57.849 40.741 0.00 0.00 42.28 2.87
1942 3940 8.876181 TCTAGTCATCTAGCTATACACTTCTCT 58.124 37.037 0.00 0.00 42.28 3.10
1960 3958 5.791336 TCTCTAGTGATGCAATACGGATT 57.209 39.130 0.00 0.00 0.00 3.01
2125 4507 5.759059 TGCCTTGGTTATCTCAAATCATCT 58.241 37.500 0.00 0.00 0.00 2.90
2139 4521 5.047021 TCAAATCATCTCAGTTTCTCGGACT 60.047 40.000 0.00 0.00 0.00 3.85
2257 4639 4.456911 ACAGATCAACAATGCACTGGTAAG 59.543 41.667 0.00 0.00 35.39 2.34
2258 4640 4.696877 CAGATCAACAATGCACTGGTAAGA 59.303 41.667 0.00 0.00 0.00 2.10
2306 4688 2.758736 AGTGAGAGATGTGTCAAGGC 57.241 50.000 0.00 0.00 0.00 4.35
2346 4728 1.393539 CGCGTTGAGGATTCGATTGTT 59.606 47.619 0.00 0.00 0.00 2.83
2364 4746 2.109128 TGTTCAACCTTTGCCCTATCCA 59.891 45.455 0.00 0.00 0.00 3.41
2416 4798 5.049129 GGATAAACTAGACCAATGCATGAGC 60.049 44.000 0.00 0.00 42.57 4.26
2458 4840 0.397941 CCAGAGACTTGGTTCCAGCA 59.602 55.000 0.00 0.00 33.38 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.563724 TTAGTCCCTCATACCACTTTTAAGT 57.436 36.000 0.00 0.00 40.60 2.24
17 18 8.101419 AGTTTAGTCCCTCATACCACTTTTAAG 58.899 37.037 0.00 0.00 0.00 1.85
18 19 7.981142 AGTTTAGTCCCTCATACCACTTTTAA 58.019 34.615 0.00 0.00 0.00 1.52
19 20 7.563724 AGTTTAGTCCCTCATACCACTTTTA 57.436 36.000 0.00 0.00 0.00 1.52
20 21 6.449830 AGTTTAGTCCCTCATACCACTTTT 57.550 37.500 0.00 0.00 0.00 2.27
21 22 6.449830 AAGTTTAGTCCCTCATACCACTTT 57.550 37.500 0.00 0.00 0.00 2.66
22 23 7.147532 GGATAAGTTTAGTCCCTCATACCACTT 60.148 40.741 0.00 0.00 0.00 3.16
23 24 6.326843 GGATAAGTTTAGTCCCTCATACCACT 59.673 42.308 0.00 0.00 0.00 4.00
24 25 6.522946 GGATAAGTTTAGTCCCTCATACCAC 58.477 44.000 0.00 0.00 0.00 4.16
25 26 5.303589 CGGATAAGTTTAGTCCCTCATACCA 59.696 44.000 0.00 0.00 0.00 3.25
26 27 5.279356 CCGGATAAGTTTAGTCCCTCATACC 60.279 48.000 0.00 0.00 0.00 2.73
27 28 5.303845 ACCGGATAAGTTTAGTCCCTCATAC 59.696 44.000 9.46 0.00 0.00 2.39
28 29 5.461327 ACCGGATAAGTTTAGTCCCTCATA 58.539 41.667 9.46 0.00 0.00 2.15
29 30 4.296056 ACCGGATAAGTTTAGTCCCTCAT 58.704 43.478 9.46 0.00 0.00 2.90
30 31 3.716431 ACCGGATAAGTTTAGTCCCTCA 58.284 45.455 9.46 0.00 0.00 3.86
31 32 4.750021 AACCGGATAAGTTTAGTCCCTC 57.250 45.455 9.46 0.00 0.00 4.30
32 33 5.509832 AAAACCGGATAAGTTTAGTCCCT 57.490 39.130 9.46 0.00 36.44 4.20
33 34 8.962884 TTATAAAACCGGATAAGTTTAGTCCC 57.037 34.615 9.46 0.00 36.44 4.46
34 35 9.605275 ACTTATAAAACCGGATAAGTTTAGTCC 57.395 33.333 16.62 0.00 43.24 3.85
41 42 7.052248 CCCTCAACTTATAAAACCGGATAAGT 58.948 38.462 16.62 16.62 46.15 2.24
42 43 7.052248 ACCCTCAACTTATAAAACCGGATAAG 58.948 38.462 9.46 13.64 40.17 1.73
43 44 6.961042 ACCCTCAACTTATAAAACCGGATAA 58.039 36.000 9.46 0.02 0.00 1.75
44 45 6.564557 ACCCTCAACTTATAAAACCGGATA 57.435 37.500 9.46 0.00 0.00 2.59
45 46 5.446260 ACCCTCAACTTATAAAACCGGAT 57.554 39.130 9.46 0.00 0.00 4.18
46 47 4.914177 ACCCTCAACTTATAAAACCGGA 57.086 40.909 9.46 0.00 0.00 5.14
47 48 5.005094 TGAACCCTCAACTTATAAAACCGG 58.995 41.667 0.00 0.00 0.00 5.28
48 49 5.390145 CGTGAACCCTCAACTTATAAAACCG 60.390 44.000 0.00 0.00 31.88 4.44
49 50 5.106436 CCGTGAACCCTCAACTTATAAAACC 60.106 44.000 0.00 0.00 31.88 3.27
50 51 5.471116 ACCGTGAACCCTCAACTTATAAAAC 59.529 40.000 0.00 0.00 31.88 2.43
51 52 5.623169 ACCGTGAACCCTCAACTTATAAAA 58.377 37.500 0.00 0.00 31.88 1.52
52 53 5.231702 ACCGTGAACCCTCAACTTATAAA 57.768 39.130 0.00 0.00 31.88 1.40
53 54 4.895668 ACCGTGAACCCTCAACTTATAA 57.104 40.909 0.00 0.00 31.88 0.98
54 55 4.895668 AACCGTGAACCCTCAACTTATA 57.104 40.909 0.00 0.00 31.88 0.98
55 56 3.782656 AACCGTGAACCCTCAACTTAT 57.217 42.857 0.00 0.00 31.88 1.73
56 57 3.207778 CAAACCGTGAACCCTCAACTTA 58.792 45.455 0.00 0.00 31.88 2.24
57 58 2.021457 CAAACCGTGAACCCTCAACTT 58.979 47.619 0.00 0.00 31.88 2.66
58 59 1.675552 CAAACCGTGAACCCTCAACT 58.324 50.000 0.00 0.00 31.88 3.16
59 60 0.030235 GCAAACCGTGAACCCTCAAC 59.970 55.000 0.00 0.00 31.88 3.18
60 61 1.104577 GGCAAACCGTGAACCCTCAA 61.105 55.000 0.00 0.00 31.88 3.02
61 62 1.527380 GGCAAACCGTGAACCCTCA 60.527 57.895 0.00 0.00 0.00 3.86
62 63 3.351450 GGCAAACCGTGAACCCTC 58.649 61.111 0.00 0.00 0.00 4.30
72 73 1.930503 CAACTTCAAAACCGGCAAACC 59.069 47.619 0.00 0.00 0.00 3.27
73 74 2.857748 CTCAACTTCAAAACCGGCAAAC 59.142 45.455 0.00 0.00 0.00 2.93
74 75 2.159170 CCTCAACTTCAAAACCGGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
75 76 1.407258 CCTCAACTTCAAAACCGGCAA 59.593 47.619 0.00 0.00 0.00 4.52
76 77 1.028905 CCTCAACTTCAAAACCGGCA 58.971 50.000 0.00 0.00 0.00 5.69
77 78 0.313987 CCCTCAACTTCAAAACCGGC 59.686 55.000 0.00 0.00 0.00 6.13
78 79 1.607148 GTCCCTCAACTTCAAAACCGG 59.393 52.381 0.00 0.00 0.00 5.28
79 80 2.572290 AGTCCCTCAACTTCAAAACCG 58.428 47.619 0.00 0.00 0.00 4.44
80 81 6.490381 AGAAATAGTCCCTCAACTTCAAAACC 59.510 38.462 0.00 0.00 0.00 3.27
81 82 7.511959 AGAAATAGTCCCTCAACTTCAAAAC 57.488 36.000 0.00 0.00 0.00 2.43
82 83 8.533569 AAAGAAATAGTCCCTCAACTTCAAAA 57.466 30.769 0.00 0.00 0.00 2.44
83 84 9.063615 GTAAAGAAATAGTCCCTCAACTTCAAA 57.936 33.333 0.00 0.00 0.00 2.69
84 85 8.437575 AGTAAAGAAATAGTCCCTCAACTTCAA 58.562 33.333 0.00 0.00 0.00 2.69
85 86 7.974504 AGTAAAGAAATAGTCCCTCAACTTCA 58.025 34.615 0.00 0.00 0.00 3.02
86 87 8.850007 AAGTAAAGAAATAGTCCCTCAACTTC 57.150 34.615 0.00 0.00 0.00 3.01
87 88 9.286170 GAAAGTAAAGAAATAGTCCCTCAACTT 57.714 33.333 0.00 0.00 0.00 2.66
88 89 8.437575 TGAAAGTAAAGAAATAGTCCCTCAACT 58.562 33.333 0.00 0.00 0.00 3.16
89 90 8.617290 TGAAAGTAAAGAAATAGTCCCTCAAC 57.383 34.615 0.00 0.00 0.00 3.18
90 91 9.635404 TTTGAAAGTAAAGAAATAGTCCCTCAA 57.365 29.630 0.00 0.00 0.00 3.02
91 92 9.635404 TTTTGAAAGTAAAGAAATAGTCCCTCA 57.365 29.630 0.00 0.00 0.00 3.86
93 94 9.862149 TCTTTTGAAAGTAAAGAAATAGTCCCT 57.138 29.630 3.63 0.00 38.35 4.20
101 102 8.466798 CCCTCAACTCTTTTGAAAGTAAAGAAA 58.533 33.333 3.63 0.00 40.14 2.52
102 103 7.832187 TCCCTCAACTCTTTTGAAAGTAAAGAA 59.168 33.333 3.63 0.00 40.14 2.52
103 104 7.343357 TCCCTCAACTCTTTTGAAAGTAAAGA 58.657 34.615 3.63 0.00 38.82 2.52
104 105 7.568199 TCCCTCAACTCTTTTGAAAGTAAAG 57.432 36.000 3.63 0.00 37.31 1.85
105 106 7.014230 CCATCCCTCAACTCTTTTGAAAGTAAA 59.986 37.037 3.63 0.00 37.31 2.01
106 107 6.490040 CCATCCCTCAACTCTTTTGAAAGTAA 59.510 38.462 3.63 0.00 37.31 2.24
107 108 6.003950 CCATCCCTCAACTCTTTTGAAAGTA 58.996 40.000 3.63 0.00 37.31 2.24
108 109 4.829492 CCATCCCTCAACTCTTTTGAAAGT 59.171 41.667 3.63 0.00 37.31 2.66
109 110 5.072741 TCCATCCCTCAACTCTTTTGAAAG 58.927 41.667 0.00 0.00 37.36 2.62
110 111 5.060427 TCCATCCCTCAACTCTTTTGAAA 57.940 39.130 0.00 0.00 0.00 2.69
111 112 4.722526 TCCATCCCTCAACTCTTTTGAA 57.277 40.909 0.00 0.00 0.00 2.69
112 113 4.722526 TTCCATCCCTCAACTCTTTTGA 57.277 40.909 0.00 0.00 0.00 2.69
113 114 5.789643 TTTTCCATCCCTCAACTCTTTTG 57.210 39.130 0.00 0.00 0.00 2.44
114 115 9.190317 GTATATTTTCCATCCCTCAACTCTTTT 57.810 33.333 0.00 0.00 0.00 2.27
115 116 8.560903 AGTATATTTTCCATCCCTCAACTCTTT 58.439 33.333 0.00 0.00 0.00 2.52
116 117 8.107196 AGTATATTTTCCATCCCTCAACTCTT 57.893 34.615 0.00 0.00 0.00 2.85
117 118 7.698163 AGTATATTTTCCATCCCTCAACTCT 57.302 36.000 0.00 0.00 0.00 3.24
122 123 9.621239 AGAGATAAGTATATTTTCCATCCCTCA 57.379 33.333 0.00 0.00 0.00 3.86
204 205 1.808343 CGGACTAAAAAGAAACGGGGG 59.192 52.381 0.00 0.00 0.00 5.40
205 206 1.198408 GCGGACTAAAAAGAAACGGGG 59.802 52.381 0.00 0.00 0.00 5.73
206 207 1.874872 TGCGGACTAAAAAGAAACGGG 59.125 47.619 0.00 0.00 0.00 5.28
207 208 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
208 209 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
209 210 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
210 211 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
211 212 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
212 213 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
213 214 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
214 215 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
215 216 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
216 217 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
217 218 5.362105 ACCAAACCTTATATGCGGACTAA 57.638 39.130 0.00 0.00 0.00 2.24
218 219 5.362105 AACCAAACCTTATATGCGGACTA 57.638 39.130 0.00 0.00 0.00 2.59
219 220 3.926058 ACCAAACCTTATATGCGGACT 57.074 42.857 0.00 0.00 0.00 3.85
220 221 6.094464 ACTTTAACCAAACCTTATATGCGGAC 59.906 38.462 0.00 0.00 0.00 4.79
221 222 6.181908 ACTTTAACCAAACCTTATATGCGGA 58.818 36.000 0.00 0.00 0.00 5.54
222 223 6.094325 TGACTTTAACCAAACCTTATATGCGG 59.906 38.462 0.00 0.00 0.00 5.69
223 224 7.079182 TGACTTTAACCAAACCTTATATGCG 57.921 36.000 0.00 0.00 0.00 4.73
224 225 7.488150 GCTTGACTTTAACCAAACCTTATATGC 59.512 37.037 0.00 0.00 0.00 3.14
225 226 8.739972 AGCTTGACTTTAACCAAACCTTATATG 58.260 33.333 0.00 0.00 0.00 1.78
226 227 8.879427 AGCTTGACTTTAACCAAACCTTATAT 57.121 30.769 0.00 0.00 0.00 0.86
227 228 8.700439 AAGCTTGACTTTAACCAAACCTTATA 57.300 30.769 0.00 0.00 33.71 0.98
228 229 7.597288 AAGCTTGACTTTAACCAAACCTTAT 57.403 32.000 0.00 0.00 33.71 1.73
229 230 7.412853 AAAGCTTGACTTTAACCAAACCTTA 57.587 32.000 0.00 0.00 46.95 2.69
230 231 5.932619 AAGCTTGACTTTAACCAAACCTT 57.067 34.783 0.00 0.00 33.71 3.50
231 232 5.932619 AAAGCTTGACTTTAACCAAACCT 57.067 34.783 0.00 0.00 46.95 3.50
242 243 4.016444 TCAAACTCCACAAAGCTTGACTT 58.984 39.130 0.00 0.00 41.70 3.01
243 244 3.378427 GTCAAACTCCACAAAGCTTGACT 59.622 43.478 0.00 0.00 43.84 3.41
244 245 3.378427 AGTCAAACTCCACAAAGCTTGAC 59.622 43.478 0.00 10.63 45.91 3.18
245 246 3.620488 AGTCAAACTCCACAAAGCTTGA 58.380 40.909 0.00 0.00 30.87 3.02
246 247 5.066505 AGTTAGTCAAACTCCACAAAGCTTG 59.933 40.000 0.00 0.00 45.64 4.01
247 248 5.193679 AGTTAGTCAAACTCCACAAAGCTT 58.806 37.500 0.00 0.00 45.64 3.74
248 249 4.781934 AGTTAGTCAAACTCCACAAAGCT 58.218 39.130 0.00 0.00 45.64 3.74
300 301 9.223099 ACGATGCATCTGATAATATTGATTTCA 57.777 29.630 23.73 0.00 0.00 2.69
301 302 9.486857 CACGATGCATCTGATAATATTGATTTC 57.513 33.333 23.73 0.00 0.00 2.17
302 303 9.223099 TCACGATGCATCTGATAATATTGATTT 57.777 29.630 23.73 0.00 0.00 2.17
303 304 8.782339 TCACGATGCATCTGATAATATTGATT 57.218 30.769 23.73 0.00 0.00 2.57
304 305 8.782339 TTCACGATGCATCTGATAATATTGAT 57.218 30.769 23.73 0.00 0.00 2.57
305 306 8.498358 GTTTCACGATGCATCTGATAATATTGA 58.502 33.333 23.73 11.71 0.00 2.57
306 307 7.476492 CGTTTCACGATGCATCTGATAATATTG 59.524 37.037 23.73 7.18 46.05 1.90
307 308 7.171508 ACGTTTCACGATGCATCTGATAATATT 59.828 33.333 23.73 7.18 46.05 1.28
308 309 6.646653 ACGTTTCACGATGCATCTGATAATAT 59.353 34.615 23.73 8.94 46.05 1.28
309 310 5.983118 ACGTTTCACGATGCATCTGATAATA 59.017 36.000 23.73 9.00 46.05 0.98
310 311 4.811024 ACGTTTCACGATGCATCTGATAAT 59.189 37.500 23.73 10.38 46.05 1.28
311 312 4.180817 ACGTTTCACGATGCATCTGATAA 58.819 39.130 23.73 16.93 46.05 1.75
312 313 3.780902 ACGTTTCACGATGCATCTGATA 58.219 40.909 23.73 16.76 46.05 2.15
313 314 2.621338 ACGTTTCACGATGCATCTGAT 58.379 42.857 23.73 7.11 46.05 2.90
314 315 2.078849 ACGTTTCACGATGCATCTGA 57.921 45.000 23.73 20.92 46.05 3.27
315 316 3.306973 ACATACGTTTCACGATGCATCTG 59.693 43.478 23.73 19.20 46.05 2.90
316 317 3.521560 ACATACGTTTCACGATGCATCT 58.478 40.909 23.73 8.80 46.05 2.90
317 318 3.925688 ACATACGTTTCACGATGCATC 57.074 42.857 17.10 17.10 46.05 3.91
318 319 3.682377 TGAACATACGTTTCACGATGCAT 59.318 39.130 0.00 0.00 46.05 3.96
319 320 3.060602 TGAACATACGTTTCACGATGCA 58.939 40.909 2.75 0.00 46.05 3.96
320 321 3.715618 TGAACATACGTTTCACGATGC 57.284 42.857 2.75 0.00 46.05 3.91
321 322 6.569228 AGTATGAACATACGTTTCACGATG 57.431 37.500 16.01 5.45 46.05 3.84
380 381 9.809096 TGCACAAAGTTTGACAAAATTTCTATA 57.191 25.926 22.23 7.89 36.64 1.31
381 382 8.715191 TGCACAAAGTTTGACAAAATTTCTAT 57.285 26.923 22.23 8.94 36.64 1.98
382 383 7.816995 ACTGCACAAAGTTTGACAAAATTTCTA 59.183 29.630 22.23 8.69 36.64 2.10
383 384 6.650390 ACTGCACAAAGTTTGACAAAATTTCT 59.350 30.769 22.23 9.13 36.64 2.52
384 385 6.830736 ACTGCACAAAGTTTGACAAAATTTC 58.169 32.000 22.23 11.95 36.64 2.17
385 386 6.799926 ACTGCACAAAGTTTGACAAAATTT 57.200 29.167 22.23 18.00 39.00 1.82
386 387 6.799926 AACTGCACAAAGTTTGACAAAATT 57.200 29.167 22.23 7.76 37.05 1.82
387 388 6.799926 AAACTGCACAAAGTTTGACAAAAT 57.200 29.167 22.23 0.00 46.16 1.82
396 397 4.923281 GTCAAAGTCAAACTGCACAAAGTT 59.077 37.500 0.00 0.00 42.21 2.66
397 398 4.485163 GTCAAAGTCAAACTGCACAAAGT 58.515 39.130 0.00 0.00 0.00 2.66
398 399 3.859386 GGTCAAAGTCAAACTGCACAAAG 59.141 43.478 0.00 0.00 0.00 2.77
399 400 3.367910 GGGTCAAAGTCAAACTGCACAAA 60.368 43.478 0.00 0.00 0.00 2.83
400 401 2.165437 GGGTCAAAGTCAAACTGCACAA 59.835 45.455 0.00 0.00 0.00 3.33
401 402 1.748493 GGGTCAAAGTCAAACTGCACA 59.252 47.619 0.00 0.00 0.00 4.57
402 403 1.748493 TGGGTCAAAGTCAAACTGCAC 59.252 47.619 0.00 0.00 0.00 4.57
403 404 2.136298 TGGGTCAAAGTCAAACTGCA 57.864 45.000 0.00 0.00 0.00 4.41
404 405 3.319122 AGATTGGGTCAAAGTCAAACTGC 59.681 43.478 0.00 0.00 0.00 4.40
405 406 5.520376 AAGATTGGGTCAAAGTCAAACTG 57.480 39.130 0.00 0.00 0.00 3.16
406 407 8.960591 CATATAAGATTGGGTCAAAGTCAAACT 58.039 33.333 0.00 0.00 0.00 2.66
407 408 7.702348 GCATATAAGATTGGGTCAAAGTCAAAC 59.298 37.037 0.00 0.00 0.00 2.93
408 409 7.415095 CGCATATAAGATTGGGTCAAAGTCAAA 60.415 37.037 0.00 0.00 0.00 2.69
409 410 6.038161 CGCATATAAGATTGGGTCAAAGTCAA 59.962 38.462 0.00 0.00 0.00 3.18
410 411 5.527214 CGCATATAAGATTGGGTCAAAGTCA 59.473 40.000 0.00 0.00 0.00 3.41
411 412 5.049405 CCGCATATAAGATTGGGTCAAAGTC 60.049 44.000 0.00 0.00 0.00 3.01
412 413 4.821805 CCGCATATAAGATTGGGTCAAAGT 59.178 41.667 0.00 0.00 0.00 2.66
413 414 5.063204 TCCGCATATAAGATTGGGTCAAAG 58.937 41.667 0.00 0.00 0.00 2.77
414 415 5.042463 TCCGCATATAAGATTGGGTCAAA 57.958 39.130 0.00 0.00 0.00 2.69
415 416 4.102524 ACTCCGCATATAAGATTGGGTCAA 59.897 41.667 0.00 0.00 0.00 3.18
416 417 3.646162 ACTCCGCATATAAGATTGGGTCA 59.354 43.478 0.00 0.00 0.00 4.02
417 418 4.273148 ACTCCGCATATAAGATTGGGTC 57.727 45.455 0.00 0.00 0.00 4.46
418 419 5.818678 TTACTCCGCATATAAGATTGGGT 57.181 39.130 0.00 0.00 0.00 4.51
419 420 7.444183 TCTTTTTACTCCGCATATAAGATTGGG 59.556 37.037 0.00 0.00 0.00 4.12
420 421 8.378172 TCTTTTTACTCCGCATATAAGATTGG 57.622 34.615 0.00 0.00 0.00 3.16
423 424 9.391006 TGTTTCTTTTTACTCCGCATATAAGAT 57.609 29.630 0.00 0.00 0.00 2.40
424 425 8.780846 TGTTTCTTTTTACTCCGCATATAAGA 57.219 30.769 0.00 0.00 0.00 2.10
425 426 8.879759 TCTGTTTCTTTTTACTCCGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
426 427 8.780846 TCTGTTTCTTTTTACTCCGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
427 428 7.494625 CCTCTGTTTCTTTTTACTCCGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
428 429 6.316390 CCTCTGTTTCTTTTTACTCCGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
429 430 5.642063 CCTCTGTTTCTTTTTACTCCGCATA 59.358 40.000 0.00 0.00 0.00 3.14
430 431 4.455877 CCTCTGTTTCTTTTTACTCCGCAT 59.544 41.667 0.00 0.00 0.00 4.73
431 432 3.813166 CCTCTGTTTCTTTTTACTCCGCA 59.187 43.478 0.00 0.00 0.00 5.69
432 433 3.188667 CCCTCTGTTTCTTTTTACTCCGC 59.811 47.826 0.00 0.00 0.00 5.54
433 434 4.638304 TCCCTCTGTTTCTTTTTACTCCG 58.362 43.478 0.00 0.00 0.00 4.63
434 435 5.622180 ACTCCCTCTGTTTCTTTTTACTCC 58.378 41.667 0.00 0.00 0.00 3.85
435 436 6.649973 GGTACTCCCTCTGTTTCTTTTTACTC 59.350 42.308 0.00 0.00 0.00 2.59
436 437 6.100714 TGGTACTCCCTCTGTTTCTTTTTACT 59.899 38.462 0.00 0.00 0.00 2.24
437 438 6.293698 TGGTACTCCCTCTGTTTCTTTTTAC 58.706 40.000 0.00 0.00 0.00 2.01
438 439 6.503560 TGGTACTCCCTCTGTTTCTTTTTA 57.496 37.500 0.00 0.00 0.00 1.52
439 440 5.382664 TGGTACTCCCTCTGTTTCTTTTT 57.617 39.130 0.00 0.00 0.00 1.94
440 441 5.163088 ACATGGTACTCCCTCTGTTTCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
441 442 4.351111 ACATGGTACTCCCTCTGTTTCTTT 59.649 41.667 0.00 0.00 0.00 2.52
442 443 3.910627 ACATGGTACTCCCTCTGTTTCTT 59.089 43.478 0.00 0.00 0.00 2.52
443 444 3.261897 CACATGGTACTCCCTCTGTTTCT 59.738 47.826 0.00 0.00 30.35 2.52
444 445 3.260884 TCACATGGTACTCCCTCTGTTTC 59.739 47.826 0.00 0.00 30.35 2.78
445 446 3.248024 TCACATGGTACTCCCTCTGTTT 58.752 45.455 0.00 0.00 30.35 2.83
446 447 2.902608 TCACATGGTACTCCCTCTGTT 58.097 47.619 0.00 0.00 30.35 3.16
447 448 2.567615 GTTCACATGGTACTCCCTCTGT 59.432 50.000 0.00 0.00 32.19 3.41
448 449 2.567169 TGTTCACATGGTACTCCCTCTG 59.433 50.000 0.00 0.00 0.00 3.35
449 450 2.834549 CTGTTCACATGGTACTCCCTCT 59.165 50.000 0.00 0.00 0.00 3.69
450 451 2.832129 TCTGTTCACATGGTACTCCCTC 59.168 50.000 0.00 0.00 0.00 4.30
451 452 2.567615 GTCTGTTCACATGGTACTCCCT 59.432 50.000 0.00 0.00 0.00 4.20
452 453 2.301870 TGTCTGTTCACATGGTACTCCC 59.698 50.000 0.00 0.00 0.00 4.30
453 454 3.678056 TGTCTGTTCACATGGTACTCC 57.322 47.619 0.00 0.00 0.00 3.85
523 535 7.352719 AGTATTAGCTTCGAGAACAAACTTG 57.647 36.000 0.00 0.00 0.00 3.16
596 610 7.442969 TGTTTTTCGACTTCTCTTAATAAGCCA 59.557 33.333 0.00 0.00 0.00 4.75
609 623 9.055248 CATAGTTCATTCATGTTTTTCGACTTC 57.945 33.333 0.00 0.00 0.00 3.01
617 632 4.704540 TCCGCCATAGTTCATTCATGTTTT 59.295 37.500 0.00 0.00 0.00 2.43
829 1035 1.201877 CCATGCGTTGCAAGTACGTAC 60.202 52.381 18.10 18.10 43.62 3.67
1069 2648 2.743928 CGCTTGGAGGTGGTCAGC 60.744 66.667 0.00 0.00 0.00 4.26
1150 3128 4.461198 CCTTGAGTAGTGTCAAACCCTTT 58.539 43.478 0.00 0.00 36.01 3.11
1181 3159 0.959553 ATCCAGTGAACGTCGACAGT 59.040 50.000 17.16 11.57 0.00 3.55
1182 3160 2.913777 TATCCAGTGAACGTCGACAG 57.086 50.000 17.16 10.90 0.00 3.51
1191 3179 8.079211 AGTTAGTGAAAGCTATATCCAGTGAA 57.921 34.615 0.00 0.00 0.00 3.18
1192 3180 7.661536 AGTTAGTGAAAGCTATATCCAGTGA 57.338 36.000 0.00 0.00 0.00 3.41
1193 3181 9.988815 ATAAGTTAGTGAAAGCTATATCCAGTG 57.011 33.333 0.00 0.00 0.00 3.66
1202 3190 9.367444 GTGAAAGCTATAAGTTAGTGAAAGCTA 57.633 33.333 0.00 0.00 37.84 3.32
1203 3191 8.097662 AGTGAAAGCTATAAGTTAGTGAAAGCT 58.902 33.333 0.00 0.00 40.38 3.74
1204 3192 8.257830 AGTGAAAGCTATAAGTTAGTGAAAGC 57.742 34.615 0.00 0.00 0.00 3.51
1210 3198 9.152595 GCAAGTTAGTGAAAGCTATAAGTTAGT 57.847 33.333 0.00 0.00 0.00 2.24
1211 3199 8.604890 GGCAAGTTAGTGAAAGCTATAAGTTAG 58.395 37.037 0.00 0.00 0.00 2.34
1212 3200 8.098286 TGGCAAGTTAGTGAAAGCTATAAGTTA 58.902 33.333 0.00 0.00 0.00 2.24
1213 3201 6.940298 TGGCAAGTTAGTGAAAGCTATAAGTT 59.060 34.615 0.00 0.00 0.00 2.66
1214 3202 6.472887 TGGCAAGTTAGTGAAAGCTATAAGT 58.527 36.000 0.00 0.00 0.00 2.24
1215 3203 6.985188 TGGCAAGTTAGTGAAAGCTATAAG 57.015 37.500 0.00 0.00 0.00 1.73
1216 3204 7.393234 ACAATGGCAAGTTAGTGAAAGCTATAA 59.607 33.333 0.00 0.00 0.00 0.98
1220 3208 3.891366 ACAATGGCAAGTTAGTGAAAGCT 59.109 39.130 0.00 0.00 0.00 3.74
1237 3225 8.429493 TCTTCTATTGCTCTTCACATACAATG 57.571 34.615 0.00 0.00 33.31 2.82
1278 3266 4.367450 CCAGTAATGGTGTTTGGTTGTTG 58.633 43.478 0.00 0.00 0.00 3.33
1279 3267 3.386402 CCCAGTAATGGTGTTTGGTTGTT 59.614 43.478 8.66 0.00 0.00 2.83
1280 3268 2.962421 CCCAGTAATGGTGTTTGGTTGT 59.038 45.455 8.66 0.00 0.00 3.32
1304 3292 3.136443 TCCCAGATCTGACACTGTTGTTT 59.864 43.478 24.62 0.00 35.47 2.83
1368 3357 3.492482 CCAGAAACATTGTTGTTGTCCCC 60.492 47.826 2.13 0.00 45.30 4.81
1481 3472 4.658063 TGTTCCCAGTTACCCTATTGTTG 58.342 43.478 0.00 0.00 0.00 3.33
1538 3529 2.171027 AGTTACGACTTTGTTGTCCCCA 59.829 45.455 0.00 0.00 31.92 4.96
1575 3569 2.755103 GGAAGCCGAAATCAATCCACTT 59.245 45.455 0.00 0.00 0.00 3.16
1603 3597 4.038162 ACTTGGATAAGGACGTATGAGCTC 59.962 45.833 6.82 6.82 38.26 4.09
1619 3615 3.615110 CGTGAGCTACACTGAACTTGGAT 60.615 47.826 12.45 0.00 46.24 3.41
1634 3630 3.238108 CTCACCAAGTAATCGTGAGCT 57.762 47.619 7.25 0.00 44.93 4.09
1641 3637 4.033358 CACGATTGAGCTCACCAAGTAATC 59.967 45.833 18.03 13.60 0.00 1.75
1653 3649 2.851195 AGTTCCAAACACGATTGAGCT 58.149 42.857 0.00 0.00 31.84 4.09
1656 3652 4.023279 CCATGAAGTTCCAAACACGATTGA 60.023 41.667 0.00 0.00 31.84 2.57
1887 3885 6.925718 GTGTATAGCTAGATGACATTGAGCAA 59.074 38.462 19.17 6.68 35.55 3.91
1919 3917 8.656806 ACTAGAGAAGTGTATAGCTAGATGACT 58.343 37.037 0.00 0.00 36.93 3.41
1920 3918 8.842358 ACTAGAGAAGTGTATAGCTAGATGAC 57.158 38.462 0.00 0.00 36.93 3.06
1935 3933 4.645136 TCCGTATTGCATCACTAGAGAAGT 59.355 41.667 0.00 0.00 39.81 3.01
1936 3934 5.188327 TCCGTATTGCATCACTAGAGAAG 57.812 43.478 0.00 0.00 0.00 2.85
1937 3935 5.791336 ATCCGTATTGCATCACTAGAGAA 57.209 39.130 0.00 0.00 0.00 2.87
1938 3936 5.069119 ACAATCCGTATTGCATCACTAGAGA 59.931 40.000 0.00 0.00 45.41 3.10
1939 3937 5.292765 ACAATCCGTATTGCATCACTAGAG 58.707 41.667 0.00 0.00 45.41 2.43
1940 3938 5.276461 ACAATCCGTATTGCATCACTAGA 57.724 39.130 0.00 0.00 45.41 2.43
1941 3939 5.991328 AACAATCCGTATTGCATCACTAG 57.009 39.130 0.00 0.00 45.41 2.57
1942 3940 5.448496 GCAAACAATCCGTATTGCATCACTA 60.448 40.000 0.00 0.00 45.41 2.74
2125 4507 4.931661 AACTGTTAGTCCGAGAAACTGA 57.068 40.909 0.00 0.00 0.00 3.41
2139 4521 8.766000 TTTTACAATCTCTGCGATAACTGTTA 57.234 30.769 2.26 2.26 0.00 2.41
2206 4588 0.949397 TATCCCTAGCGCGTGTACAG 59.051 55.000 8.43 0.00 0.00 2.74
2306 4688 0.460284 GCGGTAGTCAGTCATGGTGG 60.460 60.000 0.00 0.00 0.00 4.61
2346 4728 2.378547 AGTTGGATAGGGCAAAGGTTGA 59.621 45.455 0.00 0.00 0.00 3.18
2458 4840 9.520515 GATGGTGATAATAAGGTGATTATGGTT 57.479 33.333 0.00 0.00 34.21 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.