Multiple sequence alignment - TraesCS5D01G526800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G526800 chr5D 100.000 3494 0 0 1 3494 544480525 544484018 0.000000e+00 6453.0
1 TraesCS5D01G526800 chr5D 83.194 2029 247 54 614 2596 544459427 544461407 0.000000e+00 1772.0
2 TraesCS5D01G526800 chr4A 94.111 2836 123 19 509 3320 624369075 624371890 0.000000e+00 4272.0
3 TraesCS5D01G526800 chr4A 82.609 2024 264 49 614 2597 624350065 624352040 0.000000e+00 1707.0
4 TraesCS5D01G526800 chr4A 80.294 1294 223 22 1035 2309 624992993 624991713 0.000000e+00 948.0
5 TraesCS5D01G526800 chr4A 89.421 397 27 6 126 521 624368530 624368912 1.460000e-133 486.0
6 TraesCS5D01G526800 chr4A 78.016 746 126 22 1812 2521 625367819 625367076 5.360000e-118 435.0
7 TraesCS5D01G526800 chr4A 94.444 126 7 0 1 126 624364176 624364301 9.900000e-46 195.0
8 TraesCS5D01G526800 chr4A 89.262 149 11 3 780 928 624993200 624993057 7.700000e-42 182.0
9 TraesCS5D01G526800 chr4A 81.818 176 23 5 333 505 624349641 624349810 4.700000e-29 139.0
10 TraesCS5D01G526800 chr4A 95.122 41 2 0 572 612 619146766 619146806 8.100000e-07 65.8
11 TraesCS5D01G526800 chr4A 96.774 31 1 0 702 732 625166575 625166545 6.000000e-03 52.8
12 TraesCS5D01G526800 chr5B 90.027 1845 129 24 636 2467 686769506 686771308 0.000000e+00 2337.0
13 TraesCS5D01G526800 chr5B 89.762 1846 133 25 636 2467 686761522 686763325 0.000000e+00 2311.0
14 TraesCS5D01G526800 chr5B 80.811 1652 283 21 1047 2679 686849927 686851563 0.000000e+00 1264.0
15 TraesCS5D01G526800 chr5B 79.323 1330 236 22 1085 2384 686201106 686202426 0.000000e+00 896.0
16 TraesCS5D01G526800 chr5B 82.840 169 23 3 339 505 686847785 686847949 2.810000e-31 147.0
17 TraesCS5D01G526800 chr5B 82.840 169 23 3 339 505 686915120 686915284 2.810000e-31 147.0
18 TraesCS5D01G526800 chr5B 81.410 156 22 6 2529 2678 686746904 686747058 1.700000e-23 121.0
19 TraesCS5D01G526800 chrUn 80.751 1652 284 21 1047 2679 252494924 252493288 0.000000e+00 1258.0
20 TraesCS5D01G526800 chr6A 95.556 45 1 1 568 612 403830014 403830057 1.740000e-08 71.3
21 TraesCS5D01G526800 chr6A 91.111 45 4 0 568 612 114238966 114239010 1.050000e-05 62.1
22 TraesCS5D01G526800 chr5A 100.000 38 0 0 2 39 49128474 49128511 1.740000e-08 71.3
23 TraesCS5D01G526800 chr2B 97.500 40 1 0 573 612 68227532 68227571 6.260000e-08 69.4
24 TraesCS5D01G526800 chr2B 89.796 49 5 0 568 616 448376763 448376715 2.910000e-06 63.9
25 TraesCS5D01G526800 chr2A 95.122 41 2 0 572 612 722077289 722077249 8.100000e-07 65.8
26 TraesCS5D01G526800 chr1D 95.122 41 2 0 572 612 239333484 239333444 8.100000e-07 65.8
27 TraesCS5D01G526800 chr3A 93.023 43 3 0 570 612 37500749 37500791 2.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G526800 chr5D 544480525 544484018 3493 False 6453.0 6453 100.0000 1 3494 1 chr5D.!!$F2 3493
1 TraesCS5D01G526800 chr5D 544459427 544461407 1980 False 1772.0 1772 83.1940 614 2596 1 chr5D.!!$F1 1982
2 TraesCS5D01G526800 chr4A 624368530 624371890 3360 False 2379.0 4272 91.7660 126 3320 2 chr4A.!!$F4 3194
3 TraesCS5D01G526800 chr4A 624349641 624352040 2399 False 923.0 1707 82.2135 333 2597 2 chr4A.!!$F3 2264
4 TraesCS5D01G526800 chr4A 624991713 624993200 1487 True 565.0 948 84.7780 780 2309 2 chr4A.!!$R3 1529
5 TraesCS5D01G526800 chr4A 625367076 625367819 743 True 435.0 435 78.0160 1812 2521 1 chr4A.!!$R2 709
6 TraesCS5D01G526800 chr5B 686769506 686771308 1802 False 2337.0 2337 90.0270 636 2467 1 chr5B.!!$F4 1831
7 TraesCS5D01G526800 chr5B 686761522 686763325 1803 False 2311.0 2311 89.7620 636 2467 1 chr5B.!!$F3 1831
8 TraesCS5D01G526800 chr5B 686201106 686202426 1320 False 896.0 896 79.3230 1085 2384 1 chr5B.!!$F1 1299
9 TraesCS5D01G526800 chr5B 686847785 686851563 3778 False 705.5 1264 81.8255 339 2679 2 chr5B.!!$F6 2340
10 TraesCS5D01G526800 chrUn 252493288 252494924 1636 True 1258.0 1258 80.7510 1047 2679 1 chrUn.!!$R1 1632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.039911 AGAGAGGTGCCGAGGTTAGT 59.960 55.0 0.00 0.0 0.0 2.24 F
244 245 0.109597 GAGCAGATTTTGTGTGGCCG 60.110 55.0 0.00 0.0 0.0 6.13 F
1472 3224 0.035458 CCCTCGAGTCCAACAAGCTT 59.965 55.0 12.31 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1112 2858 0.036858 AGAGAAACGCCAAGAGGAGC 60.037 55.0 0.00 0.00 38.42 4.70 R
1602 3360 1.026718 CCGGACAAGCCATTGGAGTC 61.027 60.0 6.95 10.42 40.97 3.36 R
3263 5112 0.040067 CAACGCTGTTGCCTTTCCTC 60.040 55.0 8.15 0.00 35.36 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.443416 GGTAGAAACCAATGGGACACC 58.557 52.381 3.55 0.00 44.35 4.16
26 27 2.041216 GGTAGAAACCAATGGGACACCT 59.959 50.000 3.55 0.00 44.35 4.00
27 28 3.264964 GGTAGAAACCAATGGGACACCTA 59.735 47.826 3.55 0.00 44.35 3.08
28 29 4.865698 GGTAGAAACCAATGGGACACCTAC 60.866 50.000 3.55 7.49 44.35 3.18
37 38 3.090210 TGGGACACCTACGATAAGTCA 57.910 47.619 0.00 0.00 37.76 3.41
38 39 3.021695 TGGGACACCTACGATAAGTCAG 58.978 50.000 0.00 0.00 37.76 3.51
39 40 2.361438 GGGACACCTACGATAAGTCAGG 59.639 54.545 0.00 0.00 33.03 3.86
40 41 3.285484 GGACACCTACGATAAGTCAGGA 58.715 50.000 0.00 0.00 31.97 3.86
41 42 3.066481 GGACACCTACGATAAGTCAGGAC 59.934 52.174 0.00 0.00 31.97 3.85
42 43 3.693085 GACACCTACGATAAGTCAGGACA 59.307 47.826 1.84 0.00 31.97 4.02
43 44 4.279145 ACACCTACGATAAGTCAGGACAT 58.721 43.478 1.84 0.00 31.97 3.06
44 45 4.098044 ACACCTACGATAAGTCAGGACATG 59.902 45.833 1.84 0.00 31.97 3.21
45 46 3.068307 ACCTACGATAAGTCAGGACATGC 59.932 47.826 1.84 0.00 31.97 4.06
46 47 3.068165 CCTACGATAAGTCAGGACATGCA 59.932 47.826 1.84 0.00 0.00 3.96
47 48 3.170791 ACGATAAGTCAGGACATGCAG 57.829 47.619 1.84 0.00 0.00 4.41
48 49 2.159043 ACGATAAGTCAGGACATGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
49 50 2.101415 CGATAAGTCAGGACATGCAGGA 59.899 50.000 4.84 0.00 0.00 3.86
50 51 3.726607 GATAAGTCAGGACATGCAGGAG 58.273 50.000 4.84 0.00 0.00 3.69
51 52 0.617413 AAGTCAGGACATGCAGGAGG 59.383 55.000 4.84 0.00 0.00 4.30
52 53 0.252421 AGTCAGGACATGCAGGAGGA 60.252 55.000 4.84 0.00 0.00 3.71
53 54 0.615331 GTCAGGACATGCAGGAGGAA 59.385 55.000 4.84 0.00 0.00 3.36
54 55 0.615331 TCAGGACATGCAGGAGGAAC 59.385 55.000 4.84 0.00 0.00 3.62
55 56 0.393537 CAGGACATGCAGGAGGAACC 60.394 60.000 4.84 0.37 39.35 3.62
56 57 0.842030 AGGACATGCAGGAGGAACCA 60.842 55.000 4.84 0.00 42.04 3.67
57 58 0.678048 GGACATGCAGGAGGAACCAC 60.678 60.000 4.84 0.00 42.04 4.16
58 59 1.003355 ACATGCAGGAGGAACCACG 60.003 57.895 4.84 0.00 42.04 4.94
59 60 1.746615 CATGCAGGAGGAACCACGG 60.747 63.158 0.00 0.00 42.04 4.94
60 61 3.628646 ATGCAGGAGGAACCACGGC 62.629 63.158 0.00 0.00 42.04 5.68
62 63 4.760047 CAGGAGGAACCACGGCGG 62.760 72.222 13.24 0.00 42.04 6.13
65 66 4.699522 GAGGAACCACGGCGGCTT 62.700 66.667 13.24 0.00 39.03 4.35
66 67 3.305177 GAGGAACCACGGCGGCTTA 62.305 63.158 13.24 0.00 39.03 3.09
67 68 2.124860 GGAACCACGGCGGCTTAT 60.125 61.111 13.24 0.00 39.03 1.73
68 69 1.747745 GGAACCACGGCGGCTTATT 60.748 57.895 13.24 0.00 39.03 1.40
69 70 1.427819 GAACCACGGCGGCTTATTG 59.572 57.895 13.24 0.00 39.03 1.90
70 71 1.302993 AACCACGGCGGCTTATTGT 60.303 52.632 13.24 0.00 39.03 2.71
71 72 1.582610 AACCACGGCGGCTTATTGTG 61.583 55.000 13.24 7.20 39.03 3.33
72 73 1.743623 CCACGGCGGCTTATTGTGA 60.744 57.895 13.24 0.00 32.39 3.58
73 74 1.705337 CCACGGCGGCTTATTGTGAG 61.705 60.000 13.24 2.80 32.39 3.51
74 75 2.106683 ACGGCGGCTTATTGTGAGC 61.107 57.895 13.24 0.00 39.41 4.26
75 76 1.815421 CGGCGGCTTATTGTGAGCT 60.815 57.895 7.61 0.00 40.01 4.09
76 77 1.766143 CGGCGGCTTATTGTGAGCTC 61.766 60.000 6.82 6.82 40.01 4.09
77 78 1.638467 GCGGCTTATTGTGAGCTCG 59.362 57.895 9.64 0.00 40.01 5.03
78 79 1.766143 GCGGCTTATTGTGAGCTCGG 61.766 60.000 9.64 0.00 40.01 4.63
79 80 1.766143 CGGCTTATTGTGAGCTCGGC 61.766 60.000 9.64 5.16 40.01 5.54
80 81 0.744414 GGCTTATTGTGAGCTCGGCA 60.744 55.000 9.64 7.98 40.01 5.69
81 82 1.303309 GCTTATTGTGAGCTCGGCAT 58.697 50.000 9.64 2.95 37.18 4.40
82 83 1.672881 GCTTATTGTGAGCTCGGCATT 59.327 47.619 9.64 9.49 37.18 3.56
83 84 2.286654 GCTTATTGTGAGCTCGGCATTC 60.287 50.000 9.64 0.00 37.18 2.67
84 85 1.953559 TATTGTGAGCTCGGCATTCC 58.046 50.000 9.64 0.00 0.00 3.01
85 86 0.254178 ATTGTGAGCTCGGCATTCCT 59.746 50.000 9.64 0.00 0.00 3.36
86 87 0.901827 TTGTGAGCTCGGCATTCCTA 59.098 50.000 9.64 0.00 0.00 2.94
87 88 0.461548 TGTGAGCTCGGCATTCCTAG 59.538 55.000 9.64 0.00 0.00 3.02
88 89 0.747255 GTGAGCTCGGCATTCCTAGA 59.253 55.000 9.64 0.00 0.00 2.43
89 90 1.035923 TGAGCTCGGCATTCCTAGAG 58.964 55.000 9.64 0.00 0.00 2.43
90 91 1.323412 GAGCTCGGCATTCCTAGAGA 58.677 55.000 0.00 0.00 32.84 3.10
91 92 1.269448 GAGCTCGGCATTCCTAGAGAG 59.731 57.143 0.00 0.00 32.84 3.20
92 93 0.316841 GCTCGGCATTCCTAGAGAGG 59.683 60.000 0.00 0.00 45.35 3.69
93 94 1.698506 CTCGGCATTCCTAGAGAGGT 58.301 55.000 0.00 0.00 44.19 3.85
94 95 1.339610 CTCGGCATTCCTAGAGAGGTG 59.660 57.143 0.00 0.00 44.19 4.00
95 96 0.249657 CGGCATTCCTAGAGAGGTGC 60.250 60.000 0.00 2.32 44.19 5.01
96 97 3.696306 GCATTCCTAGAGAGGTGCC 57.304 57.895 0.00 0.00 44.19 5.01
97 98 0.249657 GCATTCCTAGAGAGGTGCCG 60.250 60.000 0.00 0.00 44.19 5.69
98 99 1.403814 CATTCCTAGAGAGGTGCCGA 58.596 55.000 0.00 0.00 44.19 5.54
99 100 1.339610 CATTCCTAGAGAGGTGCCGAG 59.660 57.143 0.00 0.00 44.19 4.63
100 101 0.395862 TTCCTAGAGAGGTGCCGAGG 60.396 60.000 0.00 0.00 44.19 4.63
101 102 1.076632 CCTAGAGAGGTGCCGAGGT 60.077 63.158 0.00 0.00 38.16 3.85
102 103 0.684805 CCTAGAGAGGTGCCGAGGTT 60.685 60.000 0.00 0.00 38.16 3.50
103 104 1.409802 CCTAGAGAGGTGCCGAGGTTA 60.410 57.143 0.00 0.00 38.16 2.85
104 105 1.950909 CTAGAGAGGTGCCGAGGTTAG 59.049 57.143 0.00 0.00 0.00 2.34
105 106 0.039911 AGAGAGGTGCCGAGGTTAGT 59.960 55.000 0.00 0.00 0.00 2.24
106 107 1.284198 AGAGAGGTGCCGAGGTTAGTA 59.716 52.381 0.00 0.00 0.00 1.82
107 108 2.097825 GAGAGGTGCCGAGGTTAGTAA 58.902 52.381 0.00 0.00 0.00 2.24
108 109 2.494870 GAGAGGTGCCGAGGTTAGTAAA 59.505 50.000 0.00 0.00 0.00 2.01
109 110 3.105283 AGAGGTGCCGAGGTTAGTAAAT 58.895 45.455 0.00 0.00 0.00 1.40
110 111 3.118738 AGAGGTGCCGAGGTTAGTAAATG 60.119 47.826 0.00 0.00 0.00 2.32
111 112 2.835764 AGGTGCCGAGGTTAGTAAATGA 59.164 45.455 0.00 0.00 0.00 2.57
112 113 2.934553 GGTGCCGAGGTTAGTAAATGAC 59.065 50.000 0.00 0.00 0.00 3.06
113 114 3.592059 GTGCCGAGGTTAGTAAATGACA 58.408 45.455 0.00 0.00 0.00 3.58
114 115 3.370061 GTGCCGAGGTTAGTAAATGACAC 59.630 47.826 0.00 0.00 0.00 3.67
115 116 3.007074 TGCCGAGGTTAGTAAATGACACA 59.993 43.478 0.00 0.00 0.00 3.72
116 117 3.370061 GCCGAGGTTAGTAAATGACACAC 59.630 47.826 0.00 0.00 0.00 3.82
117 118 3.930848 CCGAGGTTAGTAAATGACACACC 59.069 47.826 0.00 0.00 34.11 4.16
118 119 4.561938 CCGAGGTTAGTAAATGACACACCA 60.562 45.833 0.00 0.00 35.65 4.17
119 120 4.992319 CGAGGTTAGTAAATGACACACCAA 59.008 41.667 0.00 0.00 35.65 3.67
120 121 5.642063 CGAGGTTAGTAAATGACACACCAAT 59.358 40.000 0.00 0.00 35.65 3.16
121 122 6.148811 CGAGGTTAGTAAATGACACACCAATT 59.851 38.462 0.00 0.00 35.65 2.32
122 123 7.308348 CGAGGTTAGTAAATGACACACCAATTT 60.308 37.037 0.00 0.00 35.65 1.82
123 124 8.245195 AGGTTAGTAAATGACACACCAATTTT 57.755 30.769 0.00 0.00 35.65 1.82
124 125 9.357161 AGGTTAGTAAATGACACACCAATTTTA 57.643 29.630 0.00 0.00 35.65 1.52
129 130 1.883275 TGACACACCAATTTTAGGCCG 59.117 47.619 0.00 0.00 0.00 6.13
134 135 2.224670 ACACCAATTTTAGGCCGTCAGA 60.225 45.455 0.00 0.00 0.00 3.27
145 146 1.469767 GGCCGTCAGAAAATCAATGCC 60.470 52.381 0.00 0.00 0.00 4.40
151 152 4.171754 GTCAGAAAATCAATGCCTTGAGC 58.828 43.478 10.27 0.78 44.32 4.26
209 210 5.835113 TTAAGGATGGATTAGCTGTTTGC 57.165 39.130 0.00 0.00 43.29 3.68
244 245 0.109597 GAGCAGATTTTGTGTGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
261 262 5.007234 TGTGGCCGTTTATTTTCTCATATCG 59.993 40.000 0.00 0.00 0.00 2.92
263 264 6.201425 GTGGCCGTTTATTTTCTCATATCGTA 59.799 38.462 0.00 0.00 0.00 3.43
367 368 0.400213 AGAAGGTGATGCGGAACCAA 59.600 50.000 0.35 0.00 39.05 3.67
368 369 1.004745 AGAAGGTGATGCGGAACCAAT 59.995 47.619 0.35 0.00 39.05 3.16
369 370 2.238646 AGAAGGTGATGCGGAACCAATA 59.761 45.455 0.35 0.00 39.05 1.90
370 371 3.117888 AGAAGGTGATGCGGAACCAATAT 60.118 43.478 0.35 0.00 39.05 1.28
371 372 4.102524 AGAAGGTGATGCGGAACCAATATA 59.897 41.667 0.35 0.00 39.05 0.86
405 406 4.164030 TGGTATCTTGGAGCATGTACATGT 59.836 41.667 31.10 20.28 40.80 3.21
438 440 7.619698 CCTTCTTCCCCTAAGGTAATTTGATTT 59.380 37.037 0.00 0.00 37.96 2.17
476 478 2.435372 TCAGGTTGCATGGTTATCCC 57.565 50.000 0.00 0.00 0.00 3.85
488 490 4.829872 TGGTTATCCCGTGATGTTTAGT 57.170 40.909 0.00 0.00 35.15 2.24
500 505 6.814644 CCGTGATGTTTAGTGGTCAAGTTATA 59.185 38.462 0.00 0.00 0.00 0.98
522 2163 1.318576 CGCACAAGGAGGAAAAAGGT 58.681 50.000 0.00 0.00 0.00 3.50
530 2171 7.035612 CACAAGGAGGAAAAAGGTATAAATGC 58.964 38.462 0.00 0.00 0.00 3.56
551 2192 5.383476 TGCTCATATCATCAGAGTCAGAGA 58.617 41.667 0.00 0.00 0.00 3.10
556 2197 8.930846 TCATATCATCAGAGTCAGAGATGTTA 57.069 34.615 15.45 12.95 39.96 2.41
557 2198 9.531158 TCATATCATCAGAGTCAGAGATGTTAT 57.469 33.333 15.45 14.09 39.96 1.89
679 2322 5.587844 AGTCCTTGCATTAGTCAGCTTATTG 59.412 40.000 0.00 0.00 0.00 1.90
1009 2691 7.438459 ACGCATGGTTAACAAGTCTATAAGATC 59.562 37.037 8.10 0.00 0.00 2.75
1472 3224 0.035458 CCCTCGAGTCCAACAAGCTT 59.965 55.000 12.31 0.00 0.00 3.74
1625 3383 0.107017 CCAATGGCTTGTCCGGATCT 60.107 55.000 7.81 0.00 37.80 2.75
1757 3515 4.610945 CTTCAGTTGACTTTTCCGCAAAT 58.389 39.130 0.00 0.00 0.00 2.32
1890 3648 0.169672 CAACCTTCGCTGCTTGGATG 59.830 55.000 8.90 4.47 0.00 3.51
2002 3764 4.898829 TCACTAACATGCCATTGTATGC 57.101 40.909 0.00 0.00 38.04 3.14
2402 4225 0.460987 CTTCCCTGACGGTGCTCATC 60.461 60.000 0.00 0.00 0.00 2.92
2446 4269 0.907704 TACGATCACTTGGTGGGGCT 60.908 55.000 0.00 0.00 33.87 5.19
2474 4298 9.607988 ATCACGTTTGTAACTTCATGGATATAA 57.392 29.630 0.00 0.00 0.00 0.98
2526 4371 7.317722 ACTCCCTAAGATGTCTACAGTTTTT 57.682 36.000 0.00 0.00 0.00 1.94
2620 4468 8.450180 TGCTTATATACAAATATTGCATCGTGG 58.550 33.333 0.00 0.00 34.40 4.94
2650 4498 8.478877 TCTAGATGTGGTTTCTTAATCTCTTCC 58.521 37.037 0.00 0.00 0.00 3.46
2673 4521 5.643348 CCTCTATGTGTTGTGTGATGCTTTA 59.357 40.000 0.00 0.00 0.00 1.85
2679 4527 8.692110 ATGTGTTGTGTGATGCTTTATTATTG 57.308 30.769 0.00 0.00 0.00 1.90
2709 4557 4.383173 TGTCAGCTGGTTATATGCATCAG 58.617 43.478 15.13 5.10 0.00 2.90
2713 4561 5.887598 TCAGCTGGTTATATGCATCAGTTTT 59.112 36.000 15.13 0.00 0.00 2.43
2714 4562 5.975344 CAGCTGGTTATATGCATCAGTTTTG 59.025 40.000 0.19 1.50 0.00 2.44
2735 4583 4.933134 TGGATGTTTGGATGAAGGAATGA 58.067 39.130 0.00 0.00 0.00 2.57
2829 4677 3.328931 ACTCCCTCATTGTGTTGACATCT 59.671 43.478 0.00 0.00 30.13 2.90
2839 4687 1.875514 TGTTGACATCTGCTCAGTTGC 59.124 47.619 7.62 3.02 32.76 4.17
2858 4706 1.623811 GCACTGTACGGGGATGGATAT 59.376 52.381 8.54 0.00 0.00 1.63
2895 4743 4.519350 TGGATAAGGCAGTGTAGAGATACG 59.481 45.833 0.00 0.00 0.00 3.06
2952 4800 8.768501 TGTTAGTTATCTGTGATGTATCCTCT 57.231 34.615 0.00 0.00 0.00 3.69
2953 4801 8.633561 TGTTAGTTATCTGTGATGTATCCTCTG 58.366 37.037 0.00 0.00 0.00 3.35
2954 4802 6.662865 AGTTATCTGTGATGTATCCTCTGG 57.337 41.667 0.00 0.00 0.00 3.86
2961 4809 4.471025 TGTGATGTATCCTCTGGTCATTGT 59.529 41.667 0.00 0.00 0.00 2.71
2973 4821 2.563620 TGGTCATTGTGCTGCAATTCAT 59.436 40.909 2.77 0.00 44.82 2.57
2988 4836 7.703621 GCTGCAATTCATGTTCTGTTATTACAT 59.296 33.333 0.00 0.00 32.86 2.29
3054 4902 4.916983 TTTCAGTTCAACATGTTGGGAG 57.083 40.909 32.54 21.32 40.78 4.30
3057 4905 4.728772 TCAGTTCAACATGTTGGGAGATT 58.271 39.130 32.54 14.09 40.78 2.40
3088 4936 4.996758 GTCCCTGCTTATTTTTGTGCAAAT 59.003 37.500 0.00 0.00 34.90 2.32
3090 4938 4.091800 CCCTGCTTATTTTTGTGCAAATCG 59.908 41.667 0.00 0.00 34.90 3.34
3108 4956 1.021390 CGTGCTAGCACTTTGGAGGG 61.021 60.000 37.42 20.35 44.16 4.30
3113 4961 0.984230 TAGCACTTTGGAGGGGACTG 59.016 55.000 0.00 0.00 44.43 3.51
3155 5003 3.025262 CCGGTCTTCCTAGTTTCTAGCT 58.975 50.000 0.00 0.00 0.00 3.32
3168 5016 7.337942 CCTAGTTTCTAGCTTGTTGGATGATTT 59.662 37.037 0.00 0.00 0.00 2.17
3205 5053 2.991250 TCTTAGTGAAGCTTCCATGGC 58.009 47.619 23.42 8.64 32.21 4.40
3245 5094 5.334105 CGTACAATGGAGCTATTATGCAACC 60.334 44.000 0.00 0.00 34.99 3.77
3247 5096 3.769739 ATGGAGCTATTATGCAACCGA 57.230 42.857 0.00 0.00 35.58 4.69
3258 5107 8.664798 GCTATTATGCAACCGATGTATATTTGA 58.335 33.333 0.00 0.00 36.63 2.69
3276 5125 6.855763 ATTTGATTATGAGGAAAGGCAACA 57.144 33.333 0.00 0.00 41.41 3.33
3277 5126 5.902613 TTGATTATGAGGAAAGGCAACAG 57.097 39.130 0.00 0.00 41.41 3.16
3278 5127 3.696051 TGATTATGAGGAAAGGCAACAGC 59.304 43.478 0.00 0.00 41.41 4.40
3293 5142 3.980775 GCAACAGCGTTGTATTTCATTGT 59.019 39.130 4.98 0.00 36.23 2.71
3314 5163 9.681692 CATTGTTGATGAAGAAGAAACATTACA 57.318 29.630 0.00 0.00 38.03 2.41
3317 5166 7.862372 TGTTGATGAAGAAGAAACATTACAAGC 59.138 33.333 0.00 0.00 0.00 4.01
3320 5169 5.136828 TGAAGAAGAAACATTACAAGCCCA 58.863 37.500 0.00 0.00 0.00 5.36
3321 5170 5.241506 TGAAGAAGAAACATTACAAGCCCAG 59.758 40.000 0.00 0.00 0.00 4.45
3322 5171 4.082125 AGAAGAAACATTACAAGCCCAGG 58.918 43.478 0.00 0.00 0.00 4.45
3323 5172 3.806949 AGAAACATTACAAGCCCAGGA 57.193 42.857 0.00 0.00 0.00 3.86
3324 5173 4.322057 AGAAACATTACAAGCCCAGGAT 57.678 40.909 0.00 0.00 0.00 3.24
3325 5174 4.019174 AGAAACATTACAAGCCCAGGATG 58.981 43.478 0.00 0.00 0.00 3.51
3326 5175 3.737559 AACATTACAAGCCCAGGATGA 57.262 42.857 0.00 0.00 39.69 2.92
3327 5176 3.287867 ACATTACAAGCCCAGGATGAG 57.712 47.619 0.00 0.00 39.69 2.90
3328 5177 1.952296 CATTACAAGCCCAGGATGAGC 59.048 52.381 0.00 0.00 39.69 4.26
3329 5178 0.991146 TTACAAGCCCAGGATGAGCA 59.009 50.000 0.00 0.00 39.69 4.26
3330 5179 0.253044 TACAAGCCCAGGATGAGCAC 59.747 55.000 0.00 0.00 39.69 4.40
3331 5180 1.001764 CAAGCCCAGGATGAGCACA 60.002 57.895 0.00 0.00 39.69 4.57
3332 5181 1.001641 AAGCCCAGGATGAGCACAC 60.002 57.895 0.00 0.00 39.69 3.82
3333 5182 1.782201 AAGCCCAGGATGAGCACACA 61.782 55.000 0.00 0.00 39.69 3.72
3334 5183 1.303561 GCCCAGGATGAGCACACAA 60.304 57.895 0.00 0.00 39.69 3.33
3335 5184 0.895100 GCCCAGGATGAGCACACAAA 60.895 55.000 0.00 0.00 39.69 2.83
3336 5185 0.883833 CCCAGGATGAGCACACAAAC 59.116 55.000 0.00 0.00 39.69 2.93
3337 5186 1.608055 CCAGGATGAGCACACAAACA 58.392 50.000 0.00 0.00 39.69 2.83
3338 5187 1.267806 CCAGGATGAGCACACAAACAC 59.732 52.381 0.00 0.00 39.69 3.32
3339 5188 1.948834 CAGGATGAGCACACAAACACA 59.051 47.619 0.00 0.00 39.69 3.72
3340 5189 1.949525 AGGATGAGCACACAAACACAC 59.050 47.619 0.00 0.00 0.00 3.82
3341 5190 1.675483 GGATGAGCACACAAACACACA 59.325 47.619 0.00 0.00 0.00 3.72
3342 5191 2.098934 GGATGAGCACACAAACACACAA 59.901 45.455 0.00 0.00 0.00 3.33
3343 5192 2.627863 TGAGCACACAAACACACAAC 57.372 45.000 0.00 0.00 0.00 3.32
3344 5193 1.882623 TGAGCACACAAACACACAACA 59.117 42.857 0.00 0.00 0.00 3.33
3345 5194 2.294512 TGAGCACACAAACACACAACAA 59.705 40.909 0.00 0.00 0.00 2.83
3346 5195 2.661195 GAGCACACAAACACACAACAAC 59.339 45.455 0.00 0.00 0.00 3.32
3347 5196 2.035193 AGCACACAAACACACAACAACA 59.965 40.909 0.00 0.00 0.00 3.33
3348 5197 2.797156 GCACACAAACACACAACAACAA 59.203 40.909 0.00 0.00 0.00 2.83
3349 5198 3.362499 GCACACAAACACACAACAACAAC 60.362 43.478 0.00 0.00 0.00 3.32
3350 5199 3.798878 CACACAAACACACAACAACAACA 59.201 39.130 0.00 0.00 0.00 3.33
3351 5200 4.447054 CACACAAACACACAACAACAACAT 59.553 37.500 0.00 0.00 0.00 2.71
3352 5201 4.683781 ACACAAACACACAACAACAACATC 59.316 37.500 0.00 0.00 0.00 3.06
3353 5202 4.683320 CACAAACACACAACAACAACATCA 59.317 37.500 0.00 0.00 0.00 3.07
3354 5203 5.176406 CACAAACACACAACAACAACATCAA 59.824 36.000 0.00 0.00 0.00 2.57
3355 5204 5.755375 ACAAACACACAACAACAACATCAAA 59.245 32.000 0.00 0.00 0.00 2.69
3356 5205 6.258727 ACAAACACACAACAACAACATCAAAA 59.741 30.769 0.00 0.00 0.00 2.44
3357 5206 6.464895 AACACACAACAACAACATCAAAAG 57.535 33.333 0.00 0.00 0.00 2.27
3358 5207 4.388469 ACACACAACAACAACATCAAAAGC 59.612 37.500 0.00 0.00 0.00 3.51
3359 5208 4.626604 CACACAACAACAACATCAAAAGCT 59.373 37.500 0.00 0.00 0.00 3.74
3360 5209 5.120519 CACACAACAACAACATCAAAAGCTT 59.879 36.000 0.00 0.00 0.00 3.74
3361 5210 5.120519 ACACAACAACAACATCAAAAGCTTG 59.879 36.000 0.00 0.00 0.00 4.01
3362 5211 5.120519 CACAACAACAACATCAAAAGCTTGT 59.879 36.000 0.00 0.00 33.94 3.16
3363 5212 5.120519 ACAACAACAACATCAAAAGCTTGTG 59.879 36.000 10.64 10.64 33.94 3.33
3364 5213 5.070770 ACAACAACATCAAAAGCTTGTGA 57.929 34.783 21.47 21.47 33.94 3.58
3365 5214 5.104374 ACAACAACATCAAAAGCTTGTGAG 58.896 37.500 23.27 16.98 33.94 3.51
3366 5215 4.311816 ACAACATCAAAAGCTTGTGAGG 57.688 40.909 25.81 25.81 33.94 3.86
3367 5216 3.953612 ACAACATCAAAAGCTTGTGAGGA 59.046 39.130 32.21 8.53 33.94 3.71
3368 5217 4.037208 ACAACATCAAAAGCTTGTGAGGAG 59.963 41.667 32.21 25.03 33.94 3.69
3369 5218 2.555757 ACATCAAAAGCTTGTGAGGAGC 59.444 45.455 32.21 0.00 40.43 4.70
3370 5219 2.346766 TCAAAAGCTTGTGAGGAGCA 57.653 45.000 15.62 0.00 42.56 4.26
3378 5227 4.314440 GTGAGGAGCACACCGGCA 62.314 66.667 0.00 0.00 46.91 5.69
3379 5228 4.314440 TGAGGAGCACACCGGCAC 62.314 66.667 0.00 0.00 35.83 5.01
3380 5229 4.314440 GAGGAGCACACCGGCACA 62.314 66.667 0.00 0.00 35.83 4.57
3381 5230 3.825160 GAGGAGCACACCGGCACAA 62.825 63.158 0.00 0.00 35.83 3.33
3382 5231 2.672996 GGAGCACACCGGCACAAT 60.673 61.111 0.00 0.00 35.83 2.71
3383 5232 2.562912 GAGCACACCGGCACAATG 59.437 61.111 0.00 0.00 35.83 2.82
3384 5233 1.965930 GAGCACACCGGCACAATGA 60.966 57.895 0.00 0.00 35.83 2.57
3385 5234 2.187599 GAGCACACCGGCACAATGAC 62.188 60.000 0.00 0.00 35.83 3.06
3386 5235 2.551006 GCACACCGGCACAATGACA 61.551 57.895 0.00 0.00 0.00 3.58
3387 5236 2.028936 CACACCGGCACAATGACAA 58.971 52.632 0.00 0.00 0.00 3.18
3388 5237 0.317770 CACACCGGCACAATGACAAC 60.318 55.000 0.00 0.00 0.00 3.32
3389 5238 0.749818 ACACCGGCACAATGACAACA 60.750 50.000 0.00 0.00 0.00 3.33
3390 5239 0.317770 CACCGGCACAATGACAACAC 60.318 55.000 0.00 0.00 0.00 3.32
3391 5240 0.749818 ACCGGCACAATGACAACACA 60.750 50.000 0.00 0.00 0.00 3.72
3392 5241 0.383590 CCGGCACAATGACAACACAA 59.616 50.000 0.00 0.00 0.00 3.33
3393 5242 1.476074 CGGCACAATGACAACACAAC 58.524 50.000 0.00 0.00 0.00 3.32
3394 5243 1.202234 CGGCACAATGACAACACAACA 60.202 47.619 0.00 0.00 0.00 3.33
3395 5244 2.192624 GGCACAATGACAACACAACAC 58.807 47.619 0.00 0.00 0.00 3.32
3396 5245 2.416566 GGCACAATGACAACACAACACA 60.417 45.455 0.00 0.00 0.00 3.72
3397 5246 3.249091 GCACAATGACAACACAACACAA 58.751 40.909 0.00 0.00 0.00 3.33
3398 5247 3.060628 GCACAATGACAACACAACACAAC 59.939 43.478 0.00 0.00 0.00 3.32
3399 5248 4.484236 CACAATGACAACACAACACAACT 58.516 39.130 0.00 0.00 0.00 3.16
3400 5249 4.324135 CACAATGACAACACAACACAACTG 59.676 41.667 0.00 0.00 0.00 3.16
3401 5250 4.022416 ACAATGACAACACAACACAACTGT 60.022 37.500 0.00 0.00 0.00 3.55
3417 5266 7.464830 CACAACTGTGCTACTATTATGTACC 57.535 40.000 0.00 0.00 39.39 3.34
3418 5267 6.479001 CACAACTGTGCTACTATTATGTACCC 59.521 42.308 0.00 0.00 39.39 3.69
3419 5268 5.803237 ACTGTGCTACTATTATGTACCCC 57.197 43.478 0.00 0.00 0.00 4.95
3420 5269 5.464984 ACTGTGCTACTATTATGTACCCCT 58.535 41.667 0.00 0.00 0.00 4.79
3421 5270 5.903589 ACTGTGCTACTATTATGTACCCCTT 59.096 40.000 0.00 0.00 0.00 3.95
3422 5271 7.071273 ACTGTGCTACTATTATGTACCCCTTA 58.929 38.462 0.00 0.00 0.00 2.69
3423 5272 7.566138 ACTGTGCTACTATTATGTACCCCTTAA 59.434 37.037 0.00 0.00 0.00 1.85
3424 5273 7.959175 TGTGCTACTATTATGTACCCCTTAAG 58.041 38.462 0.00 0.00 0.00 1.85
3425 5274 6.872547 GTGCTACTATTATGTACCCCTTAAGC 59.127 42.308 0.00 0.00 0.00 3.09
3426 5275 6.013984 TGCTACTATTATGTACCCCTTAAGCC 60.014 42.308 0.00 0.00 0.00 4.35
3427 5276 6.212993 GCTACTATTATGTACCCCTTAAGCCT 59.787 42.308 0.00 0.00 0.00 4.58
3428 5277 6.435292 ACTATTATGTACCCCTTAAGCCTG 57.565 41.667 0.00 0.00 0.00 4.85
3429 5278 5.909417 ACTATTATGTACCCCTTAAGCCTGT 59.091 40.000 0.00 0.00 0.00 4.00
3430 5279 4.497291 TTATGTACCCCTTAAGCCTGTG 57.503 45.455 0.00 0.00 0.00 3.66
3431 5280 2.032965 TGTACCCCTTAAGCCTGTGA 57.967 50.000 0.00 0.00 0.00 3.58
3432 5281 1.906574 TGTACCCCTTAAGCCTGTGAG 59.093 52.381 0.00 0.00 0.00 3.51
3433 5282 1.209747 GTACCCCTTAAGCCTGTGAGG 59.790 57.143 0.00 0.00 38.80 3.86
3442 5291 3.051210 CCTGTGAGGCACGACTGA 58.949 61.111 0.00 0.00 37.14 3.41
3443 5292 1.373497 CCTGTGAGGCACGACTGAC 60.373 63.158 0.00 0.00 37.14 3.51
3444 5293 1.363807 CTGTGAGGCACGACTGACA 59.636 57.895 0.00 0.00 37.14 3.58
3445 5294 0.665670 CTGTGAGGCACGACTGACAG 60.666 60.000 5.07 5.07 44.11 3.51
3446 5295 1.373497 GTGAGGCACGACTGACAGG 60.373 63.158 7.51 0.00 0.00 4.00
3447 5296 2.262915 GAGGCACGACTGACAGGG 59.737 66.667 7.51 0.68 0.00 4.45
3448 5297 2.524394 AGGCACGACTGACAGGGT 60.524 61.111 7.51 1.36 0.00 4.34
3449 5298 2.100879 GAGGCACGACTGACAGGGTT 62.101 60.000 7.51 0.00 0.00 4.11
3450 5299 1.668151 GGCACGACTGACAGGGTTC 60.668 63.158 7.51 0.00 0.00 3.62
3451 5300 1.069090 GCACGACTGACAGGGTTCA 59.931 57.895 7.51 0.00 0.00 3.18
3458 5307 1.784525 CTGACAGGGTTCAGTTCGAC 58.215 55.000 0.00 0.00 38.61 4.20
3459 5308 0.391597 TGACAGGGTTCAGTTCGACC 59.608 55.000 0.00 0.00 35.14 4.79
3460 5309 0.680061 GACAGGGTTCAGTTCGACCT 59.320 55.000 0.00 0.00 36.18 3.85
3461 5310 0.680061 ACAGGGTTCAGTTCGACCTC 59.320 55.000 0.00 0.00 36.18 3.85
3462 5311 0.969894 CAGGGTTCAGTTCGACCTCT 59.030 55.000 0.00 0.00 36.18 3.69
3463 5312 2.168496 CAGGGTTCAGTTCGACCTCTA 58.832 52.381 0.00 0.00 36.18 2.43
3464 5313 2.561419 CAGGGTTCAGTTCGACCTCTAA 59.439 50.000 0.00 0.00 36.18 2.10
3465 5314 2.561858 AGGGTTCAGTTCGACCTCTAAC 59.438 50.000 0.00 0.00 36.18 2.34
3466 5315 2.298163 GGGTTCAGTTCGACCTCTAACA 59.702 50.000 6.94 0.00 36.18 2.41
3467 5316 3.315418 GGTTCAGTTCGACCTCTAACAC 58.685 50.000 6.94 0.00 33.08 3.32
3468 5317 2.978489 GTTCAGTTCGACCTCTAACACG 59.022 50.000 0.00 0.00 0.00 4.49
3469 5318 1.538512 TCAGTTCGACCTCTAACACGG 59.461 52.381 0.00 0.00 0.00 4.94
3470 5319 1.538512 CAGTTCGACCTCTAACACGGA 59.461 52.381 0.00 0.00 0.00 4.69
3471 5320 1.811359 AGTTCGACCTCTAACACGGAG 59.189 52.381 0.00 0.00 0.00 4.63
3472 5321 1.808945 GTTCGACCTCTAACACGGAGA 59.191 52.381 0.00 0.00 33.03 3.71
3473 5322 2.189594 TCGACCTCTAACACGGAGAA 57.810 50.000 0.00 0.00 33.03 2.87
3474 5323 2.507484 TCGACCTCTAACACGGAGAAA 58.493 47.619 0.00 0.00 33.03 2.52
3475 5324 2.227388 TCGACCTCTAACACGGAGAAAC 59.773 50.000 0.00 0.00 33.03 2.78
3476 5325 2.593257 GACCTCTAACACGGAGAAACG 58.407 52.381 0.00 0.00 40.31 3.60
3477 5326 2.227388 GACCTCTAACACGGAGAAACGA 59.773 50.000 0.00 0.00 37.61 3.85
3478 5327 2.624838 ACCTCTAACACGGAGAAACGAA 59.375 45.455 0.00 0.00 37.61 3.85
3479 5328 3.243336 CCTCTAACACGGAGAAACGAAG 58.757 50.000 0.00 0.00 37.61 3.79
3480 5329 3.305199 CCTCTAACACGGAGAAACGAAGT 60.305 47.826 0.00 0.00 35.87 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.041216 AGGTGTCCCATTGGTTTCTACC 59.959 50.000 1.20 3.29 45.26 3.18
6 7 3.434940 AGGTGTCCCATTGGTTTCTAC 57.565 47.619 1.20 0.00 0.00 2.59
7 8 3.055675 CGTAGGTGTCCCATTGGTTTCTA 60.056 47.826 1.20 0.00 0.00 2.10
8 9 2.290071 CGTAGGTGTCCCATTGGTTTCT 60.290 50.000 1.20 0.00 0.00 2.52
9 10 2.081462 CGTAGGTGTCCCATTGGTTTC 58.919 52.381 1.20 0.00 0.00 2.78
10 11 1.700739 TCGTAGGTGTCCCATTGGTTT 59.299 47.619 1.20 0.00 0.00 3.27
11 12 1.354101 TCGTAGGTGTCCCATTGGTT 58.646 50.000 1.20 0.00 0.00 3.67
12 13 1.580059 ATCGTAGGTGTCCCATTGGT 58.420 50.000 1.20 0.00 0.00 3.67
13 14 3.134081 ACTTATCGTAGGTGTCCCATTGG 59.866 47.826 0.00 0.00 0.00 3.16
14 15 4.142026 TGACTTATCGTAGGTGTCCCATTG 60.142 45.833 0.00 0.00 0.00 2.82
15 16 4.028131 TGACTTATCGTAGGTGTCCCATT 58.972 43.478 0.00 0.00 0.00 3.16
16 17 3.637229 CTGACTTATCGTAGGTGTCCCAT 59.363 47.826 0.00 0.00 0.00 4.00
17 18 3.021695 CTGACTTATCGTAGGTGTCCCA 58.978 50.000 0.00 0.00 0.00 4.37
18 19 2.361438 CCTGACTTATCGTAGGTGTCCC 59.639 54.545 0.00 0.00 0.00 4.46
19 20 3.066481 GTCCTGACTTATCGTAGGTGTCC 59.934 52.174 0.00 0.00 0.00 4.02
20 21 3.693085 TGTCCTGACTTATCGTAGGTGTC 59.307 47.826 0.00 0.00 0.00 3.67
21 22 3.693807 TGTCCTGACTTATCGTAGGTGT 58.306 45.455 0.00 0.00 0.00 4.16
22 23 4.611943 CATGTCCTGACTTATCGTAGGTG 58.388 47.826 0.00 0.00 0.00 4.00
23 24 3.068307 GCATGTCCTGACTTATCGTAGGT 59.932 47.826 0.00 0.00 0.00 3.08
24 25 3.068165 TGCATGTCCTGACTTATCGTAGG 59.932 47.826 0.00 0.00 0.00 3.18
25 26 4.294232 CTGCATGTCCTGACTTATCGTAG 58.706 47.826 0.00 0.00 0.00 3.51
26 27 3.068165 CCTGCATGTCCTGACTTATCGTA 59.932 47.826 0.00 0.00 0.00 3.43
27 28 2.159043 CCTGCATGTCCTGACTTATCGT 60.159 50.000 0.00 0.00 0.00 3.73
28 29 2.101415 TCCTGCATGTCCTGACTTATCG 59.899 50.000 0.00 0.00 0.00 2.92
29 30 3.494048 CCTCCTGCATGTCCTGACTTATC 60.494 52.174 0.00 0.00 0.00 1.75
30 31 2.437281 CCTCCTGCATGTCCTGACTTAT 59.563 50.000 0.00 0.00 0.00 1.73
31 32 1.833630 CCTCCTGCATGTCCTGACTTA 59.166 52.381 0.00 0.00 0.00 2.24
32 33 0.617413 CCTCCTGCATGTCCTGACTT 59.383 55.000 0.00 0.00 0.00 3.01
33 34 0.252421 TCCTCCTGCATGTCCTGACT 60.252 55.000 0.00 0.00 0.00 3.41
34 35 0.615331 TTCCTCCTGCATGTCCTGAC 59.385 55.000 0.00 0.00 0.00 3.51
35 36 0.615331 GTTCCTCCTGCATGTCCTGA 59.385 55.000 0.00 0.00 0.00 3.86
36 37 0.393537 GGTTCCTCCTGCATGTCCTG 60.394 60.000 0.00 0.00 0.00 3.86
37 38 0.842030 TGGTTCCTCCTGCATGTCCT 60.842 55.000 0.00 0.00 37.07 3.85
38 39 0.678048 GTGGTTCCTCCTGCATGTCC 60.678 60.000 0.00 0.00 37.07 4.02
39 40 1.021390 CGTGGTTCCTCCTGCATGTC 61.021 60.000 0.00 0.00 37.07 3.06
40 41 1.003355 CGTGGTTCCTCCTGCATGT 60.003 57.895 0.00 0.00 37.07 3.21
41 42 1.746615 CCGTGGTTCCTCCTGCATG 60.747 63.158 0.00 0.00 37.07 4.06
42 43 2.671070 CCGTGGTTCCTCCTGCAT 59.329 61.111 0.00 0.00 37.07 3.96
43 44 4.329545 GCCGTGGTTCCTCCTGCA 62.330 66.667 0.00 0.00 37.07 4.41
45 46 4.760047 CCGCCGTGGTTCCTCCTG 62.760 72.222 0.00 0.00 37.07 3.86
48 49 2.588856 ATAAGCCGCCGTGGTTCCTC 62.589 60.000 0.00 0.00 41.21 3.71
49 50 2.193087 AATAAGCCGCCGTGGTTCCT 62.193 55.000 0.00 0.00 41.21 3.36
50 51 1.747745 AATAAGCCGCCGTGGTTCC 60.748 57.895 0.00 0.00 41.21 3.62
51 52 1.303091 ACAATAAGCCGCCGTGGTTC 61.303 55.000 0.00 0.00 41.21 3.62
52 53 1.302993 ACAATAAGCCGCCGTGGTT 60.303 52.632 0.00 0.00 41.21 3.67
53 54 2.038269 CACAATAAGCCGCCGTGGT 61.038 57.895 0.00 0.00 41.21 4.16
54 55 1.705337 CTCACAATAAGCCGCCGTGG 61.705 60.000 0.00 0.00 42.50 4.94
55 56 1.715585 CTCACAATAAGCCGCCGTG 59.284 57.895 0.00 0.00 0.00 4.94
56 57 2.106683 GCTCACAATAAGCCGCCGT 61.107 57.895 0.00 0.00 33.53 5.68
57 58 1.766143 GAGCTCACAATAAGCCGCCG 61.766 60.000 9.40 0.00 40.75 6.46
58 59 1.766143 CGAGCTCACAATAAGCCGCC 61.766 60.000 15.40 0.00 40.75 6.13
59 60 1.638467 CGAGCTCACAATAAGCCGC 59.362 57.895 15.40 0.00 40.75 6.53
60 61 1.766143 GCCGAGCTCACAATAAGCCG 61.766 60.000 15.40 0.00 40.75 5.52
61 62 0.744414 TGCCGAGCTCACAATAAGCC 60.744 55.000 15.40 0.00 40.75 4.35
62 63 1.303309 ATGCCGAGCTCACAATAAGC 58.697 50.000 15.40 4.96 40.14 3.09
63 64 2.289002 GGAATGCCGAGCTCACAATAAG 59.711 50.000 15.40 0.00 0.00 1.73
64 65 2.092968 AGGAATGCCGAGCTCACAATAA 60.093 45.455 15.40 0.00 39.96 1.40
65 66 1.486310 AGGAATGCCGAGCTCACAATA 59.514 47.619 15.40 0.00 39.96 1.90
66 67 0.254178 AGGAATGCCGAGCTCACAAT 59.746 50.000 15.40 4.15 39.96 2.71
67 68 0.901827 TAGGAATGCCGAGCTCACAA 59.098 50.000 15.40 0.00 39.96 3.33
68 69 0.461548 CTAGGAATGCCGAGCTCACA 59.538 55.000 15.40 11.77 39.96 3.58
69 70 0.747255 TCTAGGAATGCCGAGCTCAC 59.253 55.000 15.40 5.61 36.90 3.51
70 71 1.035923 CTCTAGGAATGCCGAGCTCA 58.964 55.000 15.40 0.00 36.90 4.26
71 72 1.269448 CTCTCTAGGAATGCCGAGCTC 59.731 57.143 2.73 2.73 36.90 4.09
72 73 1.327303 CTCTCTAGGAATGCCGAGCT 58.673 55.000 0.00 0.00 36.90 4.09
73 74 3.883997 CTCTCTAGGAATGCCGAGC 57.116 57.895 0.00 0.00 36.90 5.03
84 85 1.950909 CTAACCTCGGCACCTCTCTAG 59.049 57.143 0.00 0.00 0.00 2.43
85 86 1.284198 ACTAACCTCGGCACCTCTCTA 59.716 52.381 0.00 0.00 0.00 2.43
86 87 0.039911 ACTAACCTCGGCACCTCTCT 59.960 55.000 0.00 0.00 0.00 3.10
87 88 1.760192 TACTAACCTCGGCACCTCTC 58.240 55.000 0.00 0.00 0.00 3.20
88 89 2.226962 TTACTAACCTCGGCACCTCT 57.773 50.000 0.00 0.00 0.00 3.69
89 90 3.118884 TCATTTACTAACCTCGGCACCTC 60.119 47.826 0.00 0.00 0.00 3.85
90 91 2.835764 TCATTTACTAACCTCGGCACCT 59.164 45.455 0.00 0.00 0.00 4.00
91 92 2.934553 GTCATTTACTAACCTCGGCACC 59.065 50.000 0.00 0.00 0.00 5.01
92 93 3.370061 GTGTCATTTACTAACCTCGGCAC 59.630 47.826 0.00 0.00 0.00 5.01
93 94 3.007074 TGTGTCATTTACTAACCTCGGCA 59.993 43.478 0.00 0.00 0.00 5.69
94 95 3.370061 GTGTGTCATTTACTAACCTCGGC 59.630 47.826 0.00 0.00 0.00 5.54
95 96 3.930848 GGTGTGTCATTTACTAACCTCGG 59.069 47.826 0.00 0.00 33.73 4.63
96 97 4.562082 TGGTGTGTCATTTACTAACCTCG 58.438 43.478 0.00 0.00 36.07 4.63
97 98 7.448748 AATTGGTGTGTCATTTACTAACCTC 57.551 36.000 0.00 0.00 36.07 3.85
98 99 7.833285 AAATTGGTGTGTCATTTACTAACCT 57.167 32.000 0.00 0.00 36.07 3.50
99 100 9.620660 CTAAAATTGGTGTGTCATTTACTAACC 57.379 33.333 0.00 0.00 35.80 2.85
100 101 9.620660 CCTAAAATTGGTGTGTCATTTACTAAC 57.379 33.333 0.00 0.00 0.00 2.34
101 102 8.301002 GCCTAAAATTGGTGTGTCATTTACTAA 58.699 33.333 0.00 0.00 0.00 2.24
102 103 7.094118 GGCCTAAAATTGGTGTGTCATTTACTA 60.094 37.037 0.00 0.00 0.00 1.82
103 104 6.295067 GGCCTAAAATTGGTGTGTCATTTACT 60.295 38.462 0.00 0.00 0.00 2.24
104 105 5.867174 GGCCTAAAATTGGTGTGTCATTTAC 59.133 40.000 0.00 0.00 0.00 2.01
105 106 5.336055 CGGCCTAAAATTGGTGTGTCATTTA 60.336 40.000 0.00 0.00 0.00 1.40
106 107 4.560513 CGGCCTAAAATTGGTGTGTCATTT 60.561 41.667 0.00 0.00 0.00 2.32
107 108 3.056891 CGGCCTAAAATTGGTGTGTCATT 60.057 43.478 0.00 0.00 0.00 2.57
108 109 2.491693 CGGCCTAAAATTGGTGTGTCAT 59.508 45.455 0.00 0.00 0.00 3.06
109 110 1.883275 CGGCCTAAAATTGGTGTGTCA 59.117 47.619 0.00 0.00 0.00 3.58
110 111 1.883926 ACGGCCTAAAATTGGTGTGTC 59.116 47.619 0.00 0.00 0.00 3.67
111 112 1.883926 GACGGCCTAAAATTGGTGTGT 59.116 47.619 0.00 0.00 0.00 3.72
112 113 1.883275 TGACGGCCTAAAATTGGTGTG 59.117 47.619 0.00 0.00 0.00 3.82
113 114 2.159382 CTGACGGCCTAAAATTGGTGT 58.841 47.619 0.00 0.00 0.00 4.16
114 115 2.432444 TCTGACGGCCTAAAATTGGTG 58.568 47.619 0.00 0.00 0.00 4.17
115 116 2.871096 TCTGACGGCCTAAAATTGGT 57.129 45.000 0.00 0.00 0.00 3.67
116 117 4.513198 TTTTCTGACGGCCTAAAATTGG 57.487 40.909 0.00 0.00 0.00 3.16
117 118 5.708948 TGATTTTCTGACGGCCTAAAATTG 58.291 37.500 10.86 0.00 33.03 2.32
118 119 5.975693 TGATTTTCTGACGGCCTAAAATT 57.024 34.783 10.86 0.00 33.03 1.82
119 120 5.975693 TTGATTTTCTGACGGCCTAAAAT 57.024 34.783 9.68 9.68 34.98 1.82
120 121 5.708948 CATTGATTTTCTGACGGCCTAAAA 58.291 37.500 0.00 0.86 0.00 1.52
121 122 4.380444 GCATTGATTTTCTGACGGCCTAAA 60.380 41.667 0.00 0.00 0.00 1.85
122 123 3.128589 GCATTGATTTTCTGACGGCCTAA 59.871 43.478 0.00 0.00 0.00 2.69
123 124 2.682856 GCATTGATTTTCTGACGGCCTA 59.317 45.455 0.00 0.00 0.00 3.93
124 125 1.474077 GCATTGATTTTCTGACGGCCT 59.526 47.619 0.00 0.00 0.00 5.19
129 130 4.171754 GCTCAAGGCATTGATTTTCTGAC 58.828 43.478 15.02 0.00 44.32 3.51
134 135 2.170166 TCCGCTCAAGGCATTGATTTT 58.830 42.857 15.02 0.00 44.32 1.82
145 146 1.302033 AGCACTGGTTCCGCTCAAG 60.302 57.895 0.00 0.00 0.00 3.02
151 152 2.154462 AGAATTTGAGCACTGGTTCCG 58.846 47.619 0.00 0.00 0.00 4.30
153 154 3.691609 CCCTAGAATTTGAGCACTGGTTC 59.308 47.826 0.00 0.00 0.00 3.62
154 155 3.330701 TCCCTAGAATTTGAGCACTGGTT 59.669 43.478 0.00 0.00 0.00 3.67
155 156 2.912956 TCCCTAGAATTTGAGCACTGGT 59.087 45.455 0.00 0.00 0.00 4.00
220 221 4.479619 GCCACACAAAATCTGCTCTTAAG 58.520 43.478 0.00 0.00 0.00 1.85
224 225 1.251251 GGCCACACAAAATCTGCTCT 58.749 50.000 0.00 0.00 0.00 4.09
261 262 8.942338 AATTGGAAAGAAACAAGGAAAACTAC 57.058 30.769 0.00 0.00 0.00 2.73
263 264 8.862325 AAAATTGGAAAGAAACAAGGAAAACT 57.138 26.923 0.00 0.00 0.00 2.66
292 293 8.624776 GCTCAGTTTAGTGATTTAGCCAATAAT 58.375 33.333 0.00 0.00 0.00 1.28
297 298 4.695455 GTGCTCAGTTTAGTGATTTAGCCA 59.305 41.667 0.00 0.00 0.00 4.75
314 315 4.648626 GTGGCCCTGCTGTGCTCA 62.649 66.667 0.00 0.00 0.00 4.26
367 368 9.720874 TCCAAGATACCAAGAGCTCATATATAT 57.279 33.333 17.77 6.85 0.00 0.86
368 369 9.194972 CTCCAAGATACCAAGAGCTCATATATA 57.805 37.037 17.77 1.86 0.00 0.86
369 370 7.364585 GCTCCAAGATACCAAGAGCTCATATAT 60.365 40.741 17.77 7.92 45.11 0.86
370 371 6.071108 GCTCCAAGATACCAAGAGCTCATATA 60.071 42.308 17.77 2.98 45.11 0.86
371 372 5.279910 GCTCCAAGATACCAAGAGCTCATAT 60.280 44.000 17.77 7.92 45.11 1.78
405 406 2.480255 TAGGGGAAGAAGGGCGGGAA 62.480 60.000 0.00 0.00 0.00 3.97
438 440 1.198178 GAAATAAGCGAACCGTTGCCA 59.802 47.619 0.00 0.00 0.00 4.92
476 478 6.721571 ATAACTTGACCACTAAACATCACG 57.278 37.500 0.00 0.00 0.00 4.35
488 490 3.945981 TGTGCGTCTATAACTTGACCA 57.054 42.857 0.00 0.00 0.00 4.02
500 505 2.222027 CTTTTTCCTCCTTGTGCGTCT 58.778 47.619 0.00 0.00 0.00 4.18
530 2171 7.457024 ACATCTCTGACTCTGATGATATGAG 57.543 40.000 10.50 0.00 39.72 2.90
596 2237 5.766150 TTGCTAGAGTGATCTAGAAGCTC 57.234 43.478 14.87 11.08 41.56 4.09
600 2241 4.039730 GGGCATTGCTAGAGTGATCTAGAA 59.960 45.833 14.87 2.92 41.56 2.10
602 2243 3.613671 CGGGCATTGCTAGAGTGATCTAG 60.614 52.174 8.82 7.75 41.84 2.43
679 2322 8.837389 GTCCAGTAGGGTATATCAAATTTTCAC 58.163 37.037 0.00 0.00 38.11 3.18
959 2630 5.175859 TGCAATTGGTTCAGTAGTAGTAGC 58.824 41.667 7.72 0.00 0.00 3.58
1009 2691 2.598394 CTGCTTGGGTGGTGGTGG 60.598 66.667 0.00 0.00 0.00 4.61
1112 2858 0.036858 AGAGAAACGCCAAGAGGAGC 60.037 55.000 0.00 0.00 38.42 4.70
1146 2895 2.093658 CGTTAGGGTGGCATGACTTAGT 60.094 50.000 0.00 0.00 0.00 2.24
1297 3049 4.077184 CGGGAAGCCGTAGCACCA 62.077 66.667 0.00 0.00 43.56 4.17
1472 3224 3.570926 CGTGAGCTCAACTTACCAGTA 57.429 47.619 20.19 0.00 31.22 2.74
1602 3360 1.026718 CCGGACAAGCCATTGGAGTC 61.027 60.000 6.95 10.42 40.97 3.36
1625 3383 2.357034 GACAGAGACGGCGGCAAA 60.357 61.111 18.30 0.00 0.00 3.68
1890 3648 5.516339 CGCCAACCAATGAATTATTTGAGAC 59.484 40.000 2.24 0.00 0.00 3.36
2002 3764 4.080969 AGTACTCTTCTGTTACGCTTCG 57.919 45.455 0.00 0.00 0.00 3.79
2446 4269 7.915293 ATCCATGAAGTTACAAACGTGATTA 57.085 32.000 0.00 0.00 36.23 1.75
2526 4371 8.402798 TCAGGTCAGCATTTTTATGTAAAGAA 57.597 30.769 0.00 0.00 0.00 2.52
2527 4372 7.994425 TCAGGTCAGCATTTTTATGTAAAGA 57.006 32.000 0.00 0.00 0.00 2.52
2528 4373 8.081633 TGTTCAGGTCAGCATTTTTATGTAAAG 58.918 33.333 0.00 0.00 0.00 1.85
2620 4468 9.255304 GAGATTAAGAAACCACATCTAGACATC 57.745 37.037 0.00 0.00 0.00 3.06
2650 4498 5.618056 AAAGCATCACACAACACATAGAG 57.382 39.130 0.00 0.00 0.00 2.43
2709 4557 5.467035 TCCTTCATCCAAACATCCAAAAC 57.533 39.130 0.00 0.00 0.00 2.43
2713 4561 4.933134 TCATTCCTTCATCCAAACATCCA 58.067 39.130 0.00 0.00 0.00 3.41
2714 4562 5.680665 GCTTCATTCCTTCATCCAAACATCC 60.681 44.000 0.00 0.00 0.00 3.51
2735 4583 9.289782 ACAACATTAATCTCTACTCTTTTGCTT 57.710 29.630 0.00 0.00 0.00 3.91
2797 4645 3.201290 CAATGAGGGAGTAGACATGCAC 58.799 50.000 0.00 0.00 0.00 4.57
2839 4687 2.028112 CCATATCCATCCCCGTACAGTG 60.028 54.545 0.00 0.00 0.00 3.66
2858 4706 2.932184 TATCCATAGCCCCGTATCCA 57.068 50.000 0.00 0.00 0.00 3.41
2961 4809 5.648178 ATAACAGAACATGAATTGCAGCA 57.352 34.783 0.00 0.00 0.00 4.41
2988 4836 5.163195 GCTCCCCAATTTTCTGTAGGATAGA 60.163 44.000 0.00 0.00 0.00 1.98
3033 4881 4.531854 TCTCCCAACATGTTGAACTGAAA 58.468 39.130 34.76 13.11 42.93 2.69
3034 4882 4.163441 TCTCCCAACATGTTGAACTGAA 57.837 40.909 34.76 15.02 42.93 3.02
3035 4883 3.855255 TCTCCCAACATGTTGAACTGA 57.145 42.857 34.76 23.30 42.93 3.41
3036 4884 5.009911 TCAAATCTCCCAACATGTTGAACTG 59.990 40.000 34.76 21.75 42.93 3.16
3037 4885 5.139727 TCAAATCTCCCAACATGTTGAACT 58.860 37.500 34.76 14.67 42.93 3.01
3054 4902 9.822185 AAAAATAAGCAGGGACATTATCAAATC 57.178 29.630 0.00 0.00 0.00 2.17
3057 4905 8.034215 CACAAAAATAAGCAGGGACATTATCAA 58.966 33.333 0.00 0.00 0.00 2.57
3090 4938 0.678048 CCCCTCCAAAGTGCTAGCAC 60.678 60.000 35.56 35.56 46.50 4.40
3108 4956 3.786635 ACATCAAGCGAACTATCAGTCC 58.213 45.455 0.00 0.00 0.00 3.85
3135 4983 4.082136 ACAAGCTAGAAACTAGGAAGACCG 60.082 45.833 0.00 0.00 41.83 4.79
3218 5066 4.389077 GCATAATAGCTCCATTGTACGACC 59.611 45.833 0.00 0.00 0.00 4.79
3247 5096 9.812347 TGCCTTTCCTCATAATCAAATATACAT 57.188 29.630 0.00 0.00 0.00 2.29
3258 5107 2.684881 CGCTGTTGCCTTTCCTCATAAT 59.315 45.455 0.00 0.00 35.36 1.28
3259 5108 2.083774 CGCTGTTGCCTTTCCTCATAA 58.916 47.619 0.00 0.00 35.36 1.90
3263 5112 0.040067 CAACGCTGTTGCCTTTCCTC 60.040 55.000 8.15 0.00 35.36 3.71
3269 5118 2.226330 TGAAATACAACGCTGTTGCCT 58.774 42.857 17.42 6.11 36.96 4.75
3270 5119 2.697431 TGAAATACAACGCTGTTGCC 57.303 45.000 17.42 6.45 36.96 4.52
3276 5125 6.252967 TCATCAACAATGAAATACAACGCT 57.747 33.333 0.00 0.00 41.49 5.07
3293 5142 7.370383 GGCTTGTAATGTTTCTTCTTCATCAA 58.630 34.615 0.00 0.00 0.00 2.57
3314 5163 1.001641 GTGTGCTCATCCTGGGCTT 60.002 57.895 0.11 0.00 46.08 4.35
3317 5166 0.883833 GTTTGTGTGCTCATCCTGGG 59.116 55.000 0.00 0.00 0.00 4.45
3320 5169 1.949525 GTGTGTTTGTGTGCTCATCCT 59.050 47.619 0.00 0.00 0.00 3.24
3321 5170 1.675483 TGTGTGTTTGTGTGCTCATCC 59.325 47.619 0.00 0.00 0.00 3.51
3322 5171 3.108144 GTTGTGTGTTTGTGTGCTCATC 58.892 45.455 0.00 0.00 0.00 2.92
3323 5172 2.491298 TGTTGTGTGTTTGTGTGCTCAT 59.509 40.909 0.00 0.00 0.00 2.90
3324 5173 1.882623 TGTTGTGTGTTTGTGTGCTCA 59.117 42.857 0.00 0.00 0.00 4.26
3325 5174 2.627863 TGTTGTGTGTTTGTGTGCTC 57.372 45.000 0.00 0.00 0.00 4.26
3326 5175 2.035193 TGTTGTTGTGTGTTTGTGTGCT 59.965 40.909 0.00 0.00 0.00 4.40
3327 5176 2.398498 TGTTGTTGTGTGTTTGTGTGC 58.602 42.857 0.00 0.00 0.00 4.57
3328 5177 3.798878 TGTTGTTGTTGTGTGTTTGTGTG 59.201 39.130 0.00 0.00 0.00 3.82
3329 5178 4.046938 TGTTGTTGTTGTGTGTTTGTGT 57.953 36.364 0.00 0.00 0.00 3.72
3330 5179 4.683320 TGATGTTGTTGTTGTGTGTTTGTG 59.317 37.500 0.00 0.00 0.00 3.33
3331 5180 4.876125 TGATGTTGTTGTTGTGTGTTTGT 58.124 34.783 0.00 0.00 0.00 2.83
3332 5181 5.835911 TTGATGTTGTTGTTGTGTGTTTG 57.164 34.783 0.00 0.00 0.00 2.93
3333 5182 6.565623 GCTTTTGATGTTGTTGTTGTGTGTTT 60.566 34.615 0.00 0.00 0.00 2.83
3334 5183 5.107143 GCTTTTGATGTTGTTGTTGTGTGTT 60.107 36.000 0.00 0.00 0.00 3.32
3335 5184 4.388469 GCTTTTGATGTTGTTGTTGTGTGT 59.612 37.500 0.00 0.00 0.00 3.72
3336 5185 4.626604 AGCTTTTGATGTTGTTGTTGTGTG 59.373 37.500 0.00 0.00 0.00 3.82
3337 5186 4.819769 AGCTTTTGATGTTGTTGTTGTGT 58.180 34.783 0.00 0.00 0.00 3.72
3338 5187 5.120519 ACAAGCTTTTGATGTTGTTGTTGTG 59.879 36.000 0.00 0.00 28.62 3.33
3339 5188 5.120519 CACAAGCTTTTGATGTTGTTGTTGT 59.879 36.000 6.78 0.00 30.69 3.32
3340 5189 5.348179 TCACAAGCTTTTGATGTTGTTGTTG 59.652 36.000 11.24 0.00 30.69 3.33
3341 5190 5.477510 TCACAAGCTTTTGATGTTGTTGTT 58.522 33.333 11.24 0.00 30.69 2.83
3342 5191 5.070770 TCACAAGCTTTTGATGTTGTTGT 57.929 34.783 11.24 0.00 30.69 3.32
3343 5192 4.505191 CCTCACAAGCTTTTGATGTTGTTG 59.495 41.667 15.36 2.76 30.69 3.33
3344 5193 4.402155 TCCTCACAAGCTTTTGATGTTGTT 59.598 37.500 15.36 0.00 30.69 2.83
3345 5194 3.953612 TCCTCACAAGCTTTTGATGTTGT 59.046 39.130 15.36 0.00 33.37 3.32
3346 5195 4.543692 CTCCTCACAAGCTTTTGATGTTG 58.456 43.478 15.36 4.44 0.00 3.33
3347 5196 3.005155 GCTCCTCACAAGCTTTTGATGTT 59.995 43.478 15.36 0.00 36.80 2.71
3348 5197 2.555757 GCTCCTCACAAGCTTTTGATGT 59.444 45.455 15.36 0.00 36.80 3.06
3349 5198 2.555325 TGCTCCTCACAAGCTTTTGATG 59.445 45.455 15.36 12.78 40.50 3.07
3350 5199 2.555757 GTGCTCCTCACAAGCTTTTGAT 59.444 45.455 15.36 0.00 44.98 2.57
3351 5200 1.949525 GTGCTCCTCACAAGCTTTTGA 59.050 47.619 14.34 14.34 44.98 2.69
3352 5201 2.412421 GTGCTCCTCACAAGCTTTTG 57.588 50.000 6.25 6.25 44.98 2.44
3361 5210 4.314440 TGCCGGTGTGCTCCTCAC 62.314 66.667 1.90 0.00 45.82 3.51
3362 5211 4.314440 GTGCCGGTGTGCTCCTCA 62.314 66.667 1.90 0.00 0.00 3.86
3363 5212 3.825160 TTGTGCCGGTGTGCTCCTC 62.825 63.158 1.90 0.00 0.00 3.71
3364 5213 3.196207 ATTGTGCCGGTGTGCTCCT 62.196 57.895 1.90 0.00 0.00 3.69
3365 5214 2.672996 ATTGTGCCGGTGTGCTCC 60.673 61.111 1.90 0.00 0.00 4.70
3366 5215 1.965930 TCATTGTGCCGGTGTGCTC 60.966 57.895 1.90 0.00 0.00 4.26
3367 5216 2.112928 TCATTGTGCCGGTGTGCT 59.887 55.556 1.90 0.00 0.00 4.40
3368 5217 2.069465 TTGTCATTGTGCCGGTGTGC 62.069 55.000 1.90 0.00 0.00 4.57
3369 5218 0.317770 GTTGTCATTGTGCCGGTGTG 60.318 55.000 1.90 0.00 0.00 3.82
3370 5219 0.749818 TGTTGTCATTGTGCCGGTGT 60.750 50.000 1.90 0.00 0.00 4.16
3371 5220 0.317770 GTGTTGTCATTGTGCCGGTG 60.318 55.000 1.90 0.00 0.00 4.94
3372 5221 0.749818 TGTGTTGTCATTGTGCCGGT 60.750 50.000 1.90 0.00 0.00 5.28
3373 5222 0.383590 TTGTGTTGTCATTGTGCCGG 59.616 50.000 0.00 0.00 0.00 6.13
3374 5223 1.202234 TGTTGTGTTGTCATTGTGCCG 60.202 47.619 0.00 0.00 0.00 5.69
3375 5224 2.192624 GTGTTGTGTTGTCATTGTGCC 58.807 47.619 0.00 0.00 0.00 5.01
3376 5225 2.873609 TGTGTTGTGTTGTCATTGTGC 58.126 42.857 0.00 0.00 0.00 4.57
3377 5226 4.324135 CAGTTGTGTTGTGTTGTCATTGTG 59.676 41.667 0.00 0.00 0.00 3.33
3378 5227 4.022416 ACAGTTGTGTTGTGTTGTCATTGT 60.022 37.500 0.00 0.00 30.30 2.71
3379 5228 4.324135 CACAGTTGTGTTGTGTTGTCATTG 59.676 41.667 4.11 0.00 40.73 2.82
3380 5229 4.484236 CACAGTTGTGTTGTGTTGTCATT 58.516 39.130 4.11 0.00 40.73 2.57
3381 5230 4.095410 CACAGTTGTGTTGTGTTGTCAT 57.905 40.909 4.11 0.00 40.73 3.06
3382 5231 3.550950 CACAGTTGTGTTGTGTTGTCA 57.449 42.857 4.11 0.00 40.73 3.58
3393 5242 8.376028 GGGGTACATAATAGTAGCACAGTTGTG 61.376 44.444 7.88 7.88 43.49 3.33
3394 5243 6.407752 GGGGTACATAATAGTAGCACAGTTGT 60.408 42.308 0.00 0.00 43.49 3.32
3395 5244 5.989777 GGGGTACATAATAGTAGCACAGTTG 59.010 44.000 0.00 0.00 43.49 3.16
3396 5245 5.903589 AGGGGTACATAATAGTAGCACAGTT 59.096 40.000 8.09 0.00 45.74 3.16
3397 5246 5.464984 AGGGGTACATAATAGTAGCACAGT 58.535 41.667 8.09 0.00 45.74 3.55
3398 5247 6.420913 AAGGGGTACATAATAGTAGCACAG 57.579 41.667 8.09 0.00 45.74 3.66
3399 5248 7.472381 GCTTAAGGGGTACATAATAGTAGCACA 60.472 40.741 4.29 0.00 45.74 4.57
3400 5249 6.872547 GCTTAAGGGGTACATAATAGTAGCAC 59.127 42.308 4.29 0.00 44.15 4.40
3401 5250 6.013984 GGCTTAAGGGGTACATAATAGTAGCA 60.014 42.308 4.29 0.00 42.63 3.49
3402 5251 6.212993 AGGCTTAAGGGGTACATAATAGTAGC 59.787 42.308 4.29 0.00 40.72 3.58
3403 5252 7.234988 ACAGGCTTAAGGGGTACATAATAGTAG 59.765 40.741 4.29 0.00 0.00 2.57
3404 5253 7.015877 CACAGGCTTAAGGGGTACATAATAGTA 59.984 40.741 4.29 0.00 0.00 1.82
3405 5254 5.909417 ACAGGCTTAAGGGGTACATAATAGT 59.091 40.000 4.29 0.00 0.00 2.12
3406 5255 6.042781 TCACAGGCTTAAGGGGTACATAATAG 59.957 42.308 4.29 0.00 0.00 1.73
3407 5256 5.906495 TCACAGGCTTAAGGGGTACATAATA 59.094 40.000 4.29 0.00 0.00 0.98
3408 5257 4.724798 TCACAGGCTTAAGGGGTACATAAT 59.275 41.667 4.29 0.00 0.00 1.28
3409 5258 4.105577 TCACAGGCTTAAGGGGTACATAA 58.894 43.478 4.29 0.00 0.00 1.90
3410 5259 3.709653 CTCACAGGCTTAAGGGGTACATA 59.290 47.826 4.29 0.00 0.00 2.29
3411 5260 2.505819 CTCACAGGCTTAAGGGGTACAT 59.494 50.000 4.29 0.00 0.00 2.29
3412 5261 1.906574 CTCACAGGCTTAAGGGGTACA 59.093 52.381 4.29 0.00 0.00 2.90
3413 5262 1.209747 CCTCACAGGCTTAAGGGGTAC 59.790 57.143 4.29 0.00 0.00 3.34
3414 5263 1.580059 CCTCACAGGCTTAAGGGGTA 58.420 55.000 4.29 0.00 0.00 3.69
3415 5264 2.387952 CCTCACAGGCTTAAGGGGT 58.612 57.895 4.29 0.00 0.00 4.95
3425 5274 1.373497 GTCAGTCGTGCCTCACAGG 60.373 63.158 0.00 0.00 38.80 4.00
3426 5275 0.665670 CTGTCAGTCGTGCCTCACAG 60.666 60.000 0.00 0.00 33.40 3.66
3427 5276 1.363807 CTGTCAGTCGTGCCTCACA 59.636 57.895 0.00 0.00 33.40 3.58
3428 5277 1.373497 CCTGTCAGTCGTGCCTCAC 60.373 63.158 0.00 0.00 0.00 3.51
3429 5278 2.574018 CCCTGTCAGTCGTGCCTCA 61.574 63.158 0.00 0.00 0.00 3.86
3430 5279 2.100879 AACCCTGTCAGTCGTGCCTC 62.101 60.000 0.00 0.00 0.00 4.70
3431 5280 2.100879 GAACCCTGTCAGTCGTGCCT 62.101 60.000 0.00 0.00 0.00 4.75
3432 5281 1.668151 GAACCCTGTCAGTCGTGCC 60.668 63.158 0.00 0.00 0.00 5.01
3433 5282 0.946221 CTGAACCCTGTCAGTCGTGC 60.946 60.000 0.00 0.00 40.22 5.34
3434 5283 3.201342 CTGAACCCTGTCAGTCGTG 57.799 57.895 0.00 0.00 40.22 4.35
3440 5289 0.391597 GGTCGAACTGAACCCTGTCA 59.608 55.000 0.00 0.00 0.00 3.58
3441 5290 0.680061 AGGTCGAACTGAACCCTGTC 59.320 55.000 0.00 0.00 33.45 3.51
3442 5291 0.680061 GAGGTCGAACTGAACCCTGT 59.320 55.000 8.28 0.00 33.45 4.00
3443 5292 0.969894 AGAGGTCGAACTGAACCCTG 59.030 55.000 8.28 0.00 33.45 4.45
3444 5293 2.561858 GTTAGAGGTCGAACTGAACCCT 59.438 50.000 8.28 0.00 33.45 4.34
3445 5294 2.298163 TGTTAGAGGTCGAACTGAACCC 59.702 50.000 8.28 0.00 33.45 4.11
3446 5295 3.315418 GTGTTAGAGGTCGAACTGAACC 58.685 50.000 8.28 2.94 33.45 3.62
3447 5296 2.978489 CGTGTTAGAGGTCGAACTGAAC 59.022 50.000 8.28 12.81 33.49 3.18
3448 5297 2.030540 CCGTGTTAGAGGTCGAACTGAA 60.031 50.000 8.28 0.00 33.49 3.02
3449 5298 1.538512 CCGTGTTAGAGGTCGAACTGA 59.461 52.381 8.28 0.00 33.49 3.41
3450 5299 1.538512 TCCGTGTTAGAGGTCGAACTG 59.461 52.381 8.28 0.00 33.49 3.16
3451 5300 1.811359 CTCCGTGTTAGAGGTCGAACT 59.189 52.381 0.34 0.34 33.49 3.01
3452 5301 1.808945 TCTCCGTGTTAGAGGTCGAAC 59.191 52.381 0.00 0.00 33.04 3.95
3453 5302 2.189594 TCTCCGTGTTAGAGGTCGAA 57.810 50.000 0.00 0.00 31.96 3.71
3454 5303 2.189594 TTCTCCGTGTTAGAGGTCGA 57.810 50.000 0.00 0.00 31.96 4.20
3455 5304 2.593257 GTTTCTCCGTGTTAGAGGTCG 58.407 52.381 0.00 0.00 31.96 4.79
3456 5305 2.227388 TCGTTTCTCCGTGTTAGAGGTC 59.773 50.000 0.00 0.00 31.96 3.85
3457 5306 2.233271 TCGTTTCTCCGTGTTAGAGGT 58.767 47.619 0.00 0.00 31.96 3.85
3458 5307 3.243336 CTTCGTTTCTCCGTGTTAGAGG 58.757 50.000 0.00 0.00 31.96 3.69
3459 5308 3.898529 ACTTCGTTTCTCCGTGTTAGAG 58.101 45.455 0.00 0.00 0.00 2.43
3460 5309 3.996150 ACTTCGTTTCTCCGTGTTAGA 57.004 42.857 0.00 0.00 0.00 2.10
3461 5310 5.399604 AAAACTTCGTTTCTCCGTGTTAG 57.600 39.130 0.00 0.00 34.43 2.34
3462 5311 5.799681 AAAAACTTCGTTTCTCCGTGTTA 57.200 34.783 0.00 0.00 34.43 2.41
3463 5312 4.690184 AAAAACTTCGTTTCTCCGTGTT 57.310 36.364 0.00 0.00 34.43 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.