Multiple sequence alignment - TraesCS5D01G526700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G526700 chr5D 100.000 4995 0 0 1 4995 544476875 544481869 0.000000e+00 9225.0
1 TraesCS5D01G526700 chr5D 89.930 1003 92 6 912 1912 544457461 544458456 0.000000e+00 1284.0
2 TraesCS5D01G526700 chr5D 89.432 1003 103 2 911 1912 243995380 243996380 0.000000e+00 1262.0
3 TraesCS5D01G526700 chr5D 90.168 773 64 8 2038 2800 544458476 544459246 0.000000e+00 996.0
4 TraesCS5D01G526700 chr5D 86.423 847 89 13 2039 2866 243996386 243997225 0.000000e+00 904.0
5 TraesCS5D01G526700 chr5D 79.245 318 49 13 4685 4995 544278014 544278321 6.550000e-49 206.0
6 TraesCS5D01G526700 chr5D 79.208 303 54 7 4699 4995 543803575 543803874 8.480000e-48 202.0
7 TraesCS5D01G526700 chr5D 80.077 261 49 2 4735 4995 543771940 543772197 1.840000e-44 191.0
8 TraesCS5D01G526700 chr5D 80.153 262 47 5 4735 4995 544231468 544231725 1.840000e-44 191.0
9 TraesCS5D01G526700 chr5D 79.290 169 23 6 271 429 63615319 63615153 1.900000e-19 108.0
10 TraesCS5D01G526700 chr4A 94.516 1003 54 1 911 1912 624227973 624228975 0.000000e+00 1546.0
11 TraesCS5D01G526700 chr4A 89.053 1151 96 13 2038 3176 624343842 624344974 0.000000e+00 1400.0
12 TraesCS5D01G526700 chr4A 91.120 991 87 1 923 1912 624355878 624356868 0.000000e+00 1341.0
13 TraesCS5D01G526700 chr4A 88.536 1038 106 6 912 1947 624342820 624343846 0.000000e+00 1245.0
14 TraesCS5D01G526700 chr4A 93.059 850 39 10 4159 4995 624369075 624369917 0.000000e+00 1225.0
15 TraesCS5D01G526700 chr4A 87.549 1012 120 4 907 1912 624141012 624142023 0.000000e+00 1166.0
16 TraesCS5D01G526700 chr4A 91.951 733 49 7 2038 2760 624362131 624362863 0.000000e+00 1018.0
17 TraesCS5D01G526700 chr4A 95.199 604 28 1 2754 3357 624363136 624363738 0.000000e+00 953.0
18 TraesCS5D01G526700 chr4A 87.237 854 85 16 2038 2875 624229000 624229845 0.000000e+00 952.0
19 TraesCS5D01G526700 chr4A 86.353 850 93 16 2039 2871 624142029 624142872 0.000000e+00 905.0
20 TraesCS5D01G526700 chr4A 93.632 424 19 2 3361 3776 624363878 624364301 1.180000e-175 627.0
21 TraesCS5D01G526700 chr4A 89.421 397 27 6 3776 4171 624368530 624368912 2.090000e-133 486.0
22 TraesCS5D01G526700 chr4A 89.262 149 11 3 4430 4578 624993200 624993057 1.100000e-41 182.0
23 TraesCS5D01G526700 chr4A 81.818 176 23 5 3983 4155 624349641 624349810 6.740000e-29 139.0
24 TraesCS5D01G526700 chr4A 91.667 60 5 0 821 880 624140878 624140937 3.200000e-12 84.2
25 TraesCS5D01G526700 chr4A 95.122 41 2 0 4222 4262 619146766 619146806 1.160000e-06 65.8
26 TraesCS5D01G526700 chr4A 96.774 31 1 0 4352 4382 625166575 625166545 9.000000e-03 52.8
27 TraesCS5D01G526700 chr5B 94.564 975 52 1 939 1912 686541842 686542816 0.000000e+00 1506.0
28 TraesCS5D01G526700 chr5B 86.066 854 82 20 2038 2875 686542840 686543672 0.000000e+00 883.0
29 TraesCS5D01G526700 chr5B 87.917 720 54 14 4286 4995 686769506 686770202 0.000000e+00 817.0
30 TraesCS5D01G526700 chr5B 87.500 720 57 14 4286 4995 686761522 686762218 0.000000e+00 800.0
31 TraesCS5D01G526700 chr5B 84.958 718 80 14 2129 2833 686473348 686472646 0.000000e+00 702.0
32 TraesCS5D01G526700 chr5B 81.609 261 45 3 4735 4995 686432237 686432494 3.920000e-51 213.0
33 TraesCS5D01G526700 chr5B 81.226 261 46 2 4735 4995 686333972 686334229 1.820000e-49 207.0
34 TraesCS5D01G526700 chr5B 82.840 169 23 3 3989 4155 686847785 686847949 4.030000e-31 147.0
35 TraesCS5D01G526700 chr5B 82.840 169 23 3 3989 4155 686915120 686915284 4.030000e-31 147.0
36 TraesCS5D01G526700 chr5B 88.732 71 3 3 834 900 686556604 686556673 1.150000e-11 82.4
37 TraesCS5D01G526700 chr5A 88.856 1023 109 4 911 1932 328546555 328547573 0.000000e+00 1253.0
38 TraesCS5D01G526700 chr5A 86.326 841 91 10 2039 2864 328547564 328548395 0.000000e+00 894.0
39 TraesCS5D01G526700 chr5A 78.404 213 30 10 222 422 536670798 536671006 1.890000e-24 124.0
40 TraesCS5D01G526700 chr5A 96.226 53 2 0 3637 3689 49128459 49128511 2.480000e-13 87.9
41 TraesCS5D01G526700 chrUn 89.178 998 104 3 909 1904 48437523 48438518 0.000000e+00 1242.0
42 TraesCS5D01G526700 chrUn 87.553 707 80 7 2134 2835 48438676 48439379 0.000000e+00 811.0
43 TraesCS5D01G526700 chr4D 81.327 407 58 17 18 411 471822283 471821882 1.040000e-81 315.0
44 TraesCS5D01G526700 chr4D 89.744 117 9 3 1944 2060 375135018 375134905 4.030000e-31 147.0
45 TraesCS5D01G526700 chr2A 81.141 403 42 23 38 409 427333056 427332657 4.890000e-75 292.0
46 TraesCS5D01G526700 chr2A 94.845 97 5 0 1944 2040 68155824 68155920 8.660000e-33 152.0
47 TraesCS5D01G526700 chr2A 95.122 41 2 0 4222 4262 722077289 722077249 1.160000e-06 65.8
48 TraesCS5D01G526700 chr1D 80.045 446 40 22 32 430 52219841 52219398 8.180000e-73 285.0
49 TraesCS5D01G526700 chr1D 94.231 104 5 1 1944 2047 272547554 272547656 1.860000e-34 158.0
50 TraesCS5D01G526700 chr1D 83.544 158 18 5 271 422 102781388 102781233 1.870000e-29 141.0
51 TraesCS5D01G526700 chr1D 81.548 168 21 6 271 430 10511784 10511949 4.060000e-26 130.0
52 TraesCS5D01G526700 chr1D 95.122 41 2 0 4222 4262 239333484 239333444 1.160000e-06 65.8
53 TraesCS5D01G526700 chr3B 78.237 363 47 17 99 430 61529184 61529545 2.360000e-48 204.0
54 TraesCS5D01G526700 chr1B 94.340 106 6 0 1935 2040 359902039 359902144 4.000000e-36 163.0
55 TraesCS5D01G526700 chr7B 94.286 105 6 0 1936 2040 192854268 192854164 1.440000e-35 161.0
56 TraesCS5D01G526700 chr7B 81.646 158 21 5 271 422 718830723 718830568 1.890000e-24 124.0
57 TraesCS5D01G526700 chr2B 92.793 111 8 0 1939 2049 474857980 474857870 1.440000e-35 161.0
58 TraesCS5D01G526700 chr2B 97.500 40 1 0 4223 4262 68227532 68227571 8.970000e-08 69.4
59 TraesCS5D01G526700 chr2B 89.796 49 5 0 4218 4266 448376763 448376715 4.170000e-06 63.9
60 TraesCS5D01G526700 chr1A 94.231 104 6 0 1944 2047 77163683 77163580 5.180000e-35 159.0
61 TraesCS5D01G526700 chr7D 93.333 105 7 0 1936 2040 208540314 208540418 6.700000e-34 156.0
62 TraesCS5D01G526700 chr7D 94.898 98 5 0 1943 2040 190163216 190163119 2.410000e-33 154.0
63 TraesCS5D01G526700 chr6A 95.556 45 1 1 4218 4262 403830014 403830057 2.490000e-08 71.3
64 TraesCS5D01G526700 chr6A 91.111 45 4 0 4218 4262 114238966 114239010 1.500000e-05 62.1
65 TraesCS5D01G526700 chr3A 93.023 43 3 0 4220 4262 37500749 37500791 4.170000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G526700 chr5D 544476875 544481869 4994 False 9225.0 9225 100.0000 1 4995 1 chr5D.!!$F5 4994
1 TraesCS5D01G526700 chr5D 544457461 544459246 1785 False 1140.0 1284 90.0490 912 2800 2 chr5D.!!$F7 1888
2 TraesCS5D01G526700 chr5D 243995380 243997225 1845 False 1083.0 1262 87.9275 911 2866 2 chr5D.!!$F6 1955
3 TraesCS5D01G526700 chr4A 624355878 624356868 990 False 1341.0 1341 91.1200 923 1912 1 chr4A.!!$F3 989
4 TraesCS5D01G526700 chr4A 624342820 624344974 2154 False 1322.5 1400 88.7945 912 3176 2 chr4A.!!$F6 2264
5 TraesCS5D01G526700 chr4A 624227973 624229845 1872 False 1249.0 1546 90.8765 911 2875 2 chr4A.!!$F5 1964
6 TraesCS5D01G526700 chr4A 624362131 624364301 2170 False 866.0 1018 93.5940 2038 3776 3 chr4A.!!$F7 1738
7 TraesCS5D01G526700 chr4A 624368530 624369917 1387 False 855.5 1225 91.2400 3776 4995 2 chr4A.!!$F8 1219
8 TraesCS5D01G526700 chr4A 624140878 624142872 1994 False 718.4 1166 88.5230 821 2871 3 chr4A.!!$F4 2050
9 TraesCS5D01G526700 chr5B 686541842 686543672 1830 False 1194.5 1506 90.3150 939 2875 2 chr5B.!!$F8 1936
10 TraesCS5D01G526700 chr5B 686769506 686770202 696 False 817.0 817 87.9170 4286 4995 1 chr5B.!!$F5 709
11 TraesCS5D01G526700 chr5B 686761522 686762218 696 False 800.0 800 87.5000 4286 4995 1 chr5B.!!$F4 709
12 TraesCS5D01G526700 chr5B 686472646 686473348 702 True 702.0 702 84.9580 2129 2833 1 chr5B.!!$R1 704
13 TraesCS5D01G526700 chr5A 328546555 328548395 1840 False 1073.5 1253 87.5910 911 2864 2 chr5A.!!$F3 1953
14 TraesCS5D01G526700 chrUn 48437523 48439379 1856 False 1026.5 1242 88.3655 909 2835 2 chrUn.!!$F1 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 488 0.032515 AAATCCCCAATTCCCCCGTC 60.033 55.0 0.00 0.00 0.00 4.79 F
702 703 0.036294 GCTCCCGTGCCTTACTTCTT 60.036 55.0 0.00 0.00 0.00 2.52 F
1044 1099 0.249784 ATAGGCTCAGCATGCTGACG 60.250 55.0 39.86 33.16 46.80 4.35 F
1776 1833 0.671796 CCCCGTTGACCTTTGGTTTC 59.328 55.0 0.00 0.00 35.25 2.78 F
1957 2090 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.0 0.00 0.00 0.00 4.46 F
3705 4296 0.393537 CAGGACATGCAGGAGGAACC 60.394 60.0 4.84 0.37 39.35 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2335 0.459934 TGCAACCAAAGCTGCACAAC 60.460 50.0 1.02 0.00 43.44 3.32 R
2481 2649 0.588252 GCCCACATCGCATGTATGTC 59.412 55.0 11.49 0.69 42.70 3.06 R
3005 3452 0.249741 GAGTAACCACTGCACCACGT 60.250 55.0 0.00 0.00 34.21 4.49 R
3527 4110 0.531532 CAGATAGGTTCCTGGCAGCG 60.532 60.0 9.56 2.56 0.00 5.18 R
3874 4465 1.251251 GGCCACACAAAATCTGCTCT 58.749 50.0 0.00 0.00 0.00 4.09 R
4762 5546 0.036858 AGAGAAACGCCAAGAGGAGC 60.037 55.0 0.00 0.00 38.42 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.490962 TTCACGAACATTCTAGAAATTGTGT 57.509 32.000 22.88 15.62 0.00 3.72
70 71 8.596271 TTCACGAACATTCTAGAAATTGTGTA 57.404 30.769 22.88 16.65 0.00 2.90
71 72 8.014322 TCACGAACATTCTAGAAATTGTGTAC 57.986 34.615 22.88 13.62 0.00 2.90
72 73 7.654116 TCACGAACATTCTAGAAATTGTGTACA 59.346 33.333 22.88 0.00 0.00 2.90
73 74 8.443160 CACGAACATTCTAGAAATTGTGTACAT 58.557 33.333 9.71 0.00 0.00 2.29
74 75 8.999431 ACGAACATTCTAGAAATTGTGTACATT 58.001 29.630 9.71 0.00 0.00 2.71
75 76 9.825972 CGAACATTCTAGAAATTGTGTACATTT 57.174 29.630 9.71 0.00 0.00 2.32
83 84 9.831737 CTAGAAATTGTGTACATTTTCTGGAAG 57.168 33.333 27.94 19.89 46.22 3.46
84 85 8.463930 AGAAATTGTGTACATTTTCTGGAAGA 57.536 30.769 23.40 0.00 46.28 2.87
99 100 6.403333 TCTGGAAGACGTGAATATTTTTCG 57.597 37.500 0.00 0.00 38.67 3.46
100 101 6.160684 TCTGGAAGACGTGAATATTTTTCGA 58.839 36.000 0.00 0.00 38.67 3.71
101 102 6.647481 TCTGGAAGACGTGAATATTTTTCGAA 59.353 34.615 0.00 0.00 38.67 3.71
102 103 7.171848 TCTGGAAGACGTGAATATTTTTCGAAA 59.828 33.333 6.47 6.47 38.67 3.46
103 104 7.812648 TGGAAGACGTGAATATTTTTCGAAAT 58.187 30.769 12.12 0.00 0.00 2.17
104 105 8.293867 TGGAAGACGTGAATATTTTTCGAAATT 58.706 29.630 12.12 2.54 0.00 1.82
105 106 9.124807 GGAAGACGTGAATATTTTTCGAAATTT 57.875 29.630 12.12 4.94 0.00 1.82
108 109 9.893305 AGACGTGAATATTTTTCGAAATTTTCT 57.107 25.926 12.12 0.00 33.87 2.52
109 110 9.922951 GACGTGAATATTTTTCGAAATTTTCTG 57.077 29.630 12.12 10.85 33.87 3.02
110 111 9.672086 ACGTGAATATTTTTCGAAATTTTCTGA 57.328 25.926 12.12 4.10 33.87 3.27
118 119 9.934190 ATTTTTCGAAATTTTCTGAATTTGGTG 57.066 25.926 12.12 0.00 30.68 4.17
119 120 8.709386 TTTTCGAAATTTTCTGAATTTGGTGA 57.291 26.923 12.12 0.00 30.68 4.02
120 121 8.885494 TTTCGAAATTTTCTGAATTTGGTGAT 57.115 26.923 6.47 0.00 30.68 3.06
121 122 8.885494 TTCGAAATTTTCTGAATTTGGTGATT 57.115 26.923 7.50 0.00 30.68 2.57
122 123 8.885494 TCGAAATTTTCTGAATTTGGTGATTT 57.115 26.923 7.50 0.00 30.68 2.17
123 124 9.323985 TCGAAATTTTCTGAATTTGGTGATTTT 57.676 25.926 7.50 0.00 30.68 1.82
124 125 9.934190 CGAAATTTTCTGAATTTGGTGATTTTT 57.066 25.926 7.50 0.00 30.68 1.94
227 228 9.906660 AAACTGAATAGCGAACATTATTTTTGA 57.093 25.926 0.00 0.00 0.00 2.69
228 229 9.906660 AACTGAATAGCGAACATTATTTTTGAA 57.093 25.926 0.00 0.00 0.00 2.69
229 230 9.906660 ACTGAATAGCGAACATTATTTTTGAAA 57.093 25.926 0.00 0.00 0.00 2.69
235 236 8.586570 AGCGAACATTATTTTTGAAATTGTGA 57.413 26.923 0.00 0.00 0.00 3.58
236 237 9.206870 AGCGAACATTATTTTTGAAATTGTGAT 57.793 25.926 0.00 0.00 0.00 3.06
237 238 9.810231 GCGAACATTATTTTTGAAATTGTGATT 57.190 25.926 0.00 0.00 0.00 2.57
265 266 9.893634 TTTTTGAATCCATGAGCATTATCATTT 57.106 25.926 0.00 0.00 37.84 2.32
267 268 9.970395 TTTGAATCCATGAGCATTATCATTTAC 57.030 29.630 0.00 0.00 37.84 2.01
268 269 8.929260 TGAATCCATGAGCATTATCATTTACT 57.071 30.769 0.00 0.00 37.84 2.24
273 274 9.625747 TCCATGAGCATTATCATTTACTAAACA 57.374 29.630 0.00 0.00 37.84 2.83
291 292 8.918961 ACTAAACATTTTTCAAATCACGAACA 57.081 26.923 0.00 0.00 0.00 3.18
292 293 9.360093 ACTAAACATTTTTCAAATCACGAACAA 57.640 25.926 0.00 0.00 0.00 2.83
295 296 9.701355 AAACATTTTTCAAATCACGAACAATTC 57.299 25.926 0.00 0.00 0.00 2.17
296 297 8.417780 ACATTTTTCAAATCACGAACAATTCA 57.582 26.923 0.00 0.00 0.00 2.57
297 298 8.877779 ACATTTTTCAAATCACGAACAATTCAA 58.122 25.926 0.00 0.00 0.00 2.69
298 299 9.146270 CATTTTTCAAATCACGAACAATTCAAC 57.854 29.630 0.00 0.00 0.00 3.18
299 300 7.818493 TTTTCAAATCACGAACAATTCAACA 57.182 28.000 0.00 0.00 0.00 3.33
300 301 8.417780 TTTTCAAATCACGAACAATTCAACAT 57.582 26.923 0.00 0.00 0.00 2.71
301 302 8.417780 TTTCAAATCACGAACAATTCAACATT 57.582 26.923 0.00 0.00 0.00 2.71
302 303 8.417780 TTCAAATCACGAACAATTCAACATTT 57.582 26.923 0.00 0.00 0.00 2.32
303 304 8.417780 TCAAATCACGAACAATTCAACATTTT 57.582 26.923 0.00 0.00 0.00 1.82
304 305 8.877779 TCAAATCACGAACAATTCAACATTTTT 58.122 25.926 0.00 0.00 0.00 1.94
305 306 8.935941 CAAATCACGAACAATTCAACATTTTTG 58.064 29.630 0.00 0.00 0.00 2.44
306 307 6.030379 TCACGAACAATTCAACATTTTTGC 57.970 33.333 0.00 0.00 0.00 3.68
307 308 5.578336 TCACGAACAATTCAACATTTTTGCA 59.422 32.000 0.00 0.00 0.00 4.08
308 309 6.257411 TCACGAACAATTCAACATTTTTGCAT 59.743 30.769 0.00 0.00 0.00 3.96
309 310 6.570789 CACGAACAATTCAACATTTTTGCATC 59.429 34.615 0.00 0.00 0.00 3.91
310 311 6.479660 ACGAACAATTCAACATTTTTGCATCT 59.520 30.769 0.00 0.00 0.00 2.90
311 312 7.011295 ACGAACAATTCAACATTTTTGCATCTT 59.989 29.630 0.00 0.00 0.00 2.40
312 313 7.851963 CGAACAATTCAACATTTTTGCATCTTT 59.148 29.630 0.00 0.00 0.00 2.52
313 314 9.505995 GAACAATTCAACATTTTTGCATCTTTT 57.494 25.926 0.00 0.00 0.00 2.27
314 315 9.857957 AACAATTCAACATTTTTGCATCTTTTT 57.142 22.222 0.00 0.00 0.00 1.94
315 316 9.505995 ACAATTCAACATTTTTGCATCTTTTTC 57.494 25.926 0.00 0.00 0.00 2.29
316 317 9.724839 CAATTCAACATTTTTGCATCTTTTTCT 57.275 25.926 0.00 0.00 0.00 2.52
317 318 9.724839 AATTCAACATTTTTGCATCTTTTTCTG 57.275 25.926 0.00 0.00 0.00 3.02
318 319 8.489990 TTCAACATTTTTGCATCTTTTTCTGA 57.510 26.923 0.00 0.00 0.00 3.27
319 320 8.489990 TCAACATTTTTGCATCTTTTTCTGAA 57.510 26.923 0.00 0.00 0.00 3.02
320 321 8.944029 TCAACATTTTTGCATCTTTTTCTGAAA 58.056 25.926 0.00 0.00 0.00 2.69
321 322 9.724839 CAACATTTTTGCATCTTTTTCTGAAAT 57.275 25.926 3.31 0.00 0.00 2.17
322 323 9.940166 AACATTTTTGCATCTTTTTCTGAAATC 57.060 25.926 3.31 0.00 0.00 2.17
323 324 8.562052 ACATTTTTGCATCTTTTTCTGAAATCC 58.438 29.630 3.31 0.00 0.00 3.01
324 325 7.495135 TTTTTGCATCTTTTTCTGAAATCCC 57.505 32.000 3.31 0.00 0.00 3.85
325 326 5.804944 TTGCATCTTTTTCTGAAATCCCA 57.195 34.783 3.31 0.00 0.00 4.37
326 327 5.804944 TGCATCTTTTTCTGAAATCCCAA 57.195 34.783 3.31 0.00 0.00 4.12
327 328 5.786311 TGCATCTTTTTCTGAAATCCCAAG 58.214 37.500 3.31 5.00 0.00 3.61
328 329 5.305128 TGCATCTTTTTCTGAAATCCCAAGT 59.695 36.000 3.31 0.00 0.00 3.16
329 330 6.183360 TGCATCTTTTTCTGAAATCCCAAGTT 60.183 34.615 3.31 0.00 0.00 2.66
330 331 7.015098 TGCATCTTTTTCTGAAATCCCAAGTTA 59.985 33.333 3.31 0.00 0.00 2.24
331 332 8.037166 GCATCTTTTTCTGAAATCCCAAGTTAT 58.963 33.333 3.31 0.00 0.00 1.89
332 333 9.933723 CATCTTTTTCTGAAATCCCAAGTTATT 57.066 29.630 3.31 0.00 0.00 1.40
360 361 7.865706 AAGAAGTAAAGAAGCTGAAAACAGA 57.134 32.000 0.00 0.00 0.00 3.41
361 362 7.865706 AGAAGTAAAGAAGCTGAAAACAGAA 57.134 32.000 0.00 0.00 0.00 3.02
362 363 8.281212 AGAAGTAAAGAAGCTGAAAACAGAAA 57.719 30.769 0.00 0.00 0.00 2.52
363 364 8.739972 AGAAGTAAAGAAGCTGAAAACAGAAAA 58.260 29.630 0.00 0.00 0.00 2.29
364 365 9.353999 GAAGTAAAGAAGCTGAAAACAGAAAAA 57.646 29.630 0.00 0.00 0.00 1.94
383 384 3.457560 AAAAAGACAAGGGGCTCCC 57.542 52.632 0.00 0.00 45.90 4.30
414 415 2.280186 GGTCGGCCCATAAGAGCG 60.280 66.667 0.00 0.00 0.00 5.03
415 416 2.967615 GTCGGCCCATAAGAGCGC 60.968 66.667 0.00 0.00 0.00 5.92
416 417 4.585526 TCGGCCCATAAGAGCGCG 62.586 66.667 0.00 0.00 0.00 6.86
456 457 2.657296 CGTACGGCGCCACATAGG 60.657 66.667 28.98 16.43 41.84 2.57
457 458 2.809706 GTACGGCGCCACATAGGA 59.190 61.111 28.98 2.35 41.22 2.94
458 459 1.299926 GTACGGCGCCACATAGGAG 60.300 63.158 28.98 9.93 41.22 3.69
463 464 2.423446 CGCCACATAGGAGCCCTC 59.577 66.667 0.00 0.00 41.22 4.30
474 475 3.503998 GAGCCCTCCAGAAAATCCC 57.496 57.895 0.00 0.00 0.00 3.85
475 476 0.106469 GAGCCCTCCAGAAAATCCCC 60.106 60.000 0.00 0.00 0.00 4.81
476 477 0.850883 AGCCCTCCAGAAAATCCCCA 60.851 55.000 0.00 0.00 0.00 4.96
477 478 0.041090 GCCCTCCAGAAAATCCCCAA 59.959 55.000 0.00 0.00 0.00 4.12
478 479 1.343377 GCCCTCCAGAAAATCCCCAAT 60.343 52.381 0.00 0.00 0.00 3.16
479 480 2.894007 GCCCTCCAGAAAATCCCCAATT 60.894 50.000 0.00 0.00 0.00 2.32
480 481 3.033909 CCCTCCAGAAAATCCCCAATTC 58.966 50.000 0.00 0.00 0.00 2.17
481 482 3.033909 CCTCCAGAAAATCCCCAATTCC 58.966 50.000 0.00 0.00 0.00 3.01
482 483 3.033909 CTCCAGAAAATCCCCAATTCCC 58.966 50.000 0.00 0.00 0.00 3.97
483 484 2.118679 CCAGAAAATCCCCAATTCCCC 58.881 52.381 0.00 0.00 0.00 4.81
484 485 2.118679 CAGAAAATCCCCAATTCCCCC 58.881 52.381 0.00 0.00 0.00 5.40
485 486 1.119684 GAAAATCCCCAATTCCCCCG 58.880 55.000 0.00 0.00 0.00 5.73
486 487 0.415830 AAAATCCCCAATTCCCCCGT 59.584 50.000 0.00 0.00 0.00 5.28
487 488 0.032515 AAATCCCCAATTCCCCCGTC 60.033 55.000 0.00 0.00 0.00 4.79
488 489 1.944896 AATCCCCAATTCCCCCGTCC 61.945 60.000 0.00 0.00 0.00 4.79
489 490 4.499633 CCCCAATTCCCCCGTCCG 62.500 72.222 0.00 0.00 0.00 4.79
490 491 3.404438 CCCAATTCCCCCGTCCGA 61.404 66.667 0.00 0.00 0.00 4.55
491 492 2.752807 CCCAATTCCCCCGTCCGAT 61.753 63.158 0.00 0.00 0.00 4.18
492 493 1.226262 CCAATTCCCCCGTCCGATT 59.774 57.895 0.00 0.00 0.00 3.34
493 494 0.818040 CCAATTCCCCCGTCCGATTC 60.818 60.000 0.00 0.00 0.00 2.52
494 495 1.145377 AATTCCCCCGTCCGATTCG 59.855 57.895 0.00 0.00 0.00 3.34
495 496 2.935627 AATTCCCCCGTCCGATTCGC 62.936 60.000 0.00 0.00 0.00 4.70
497 498 4.891727 CCCCCGTCCGATTCGCTG 62.892 72.222 0.00 0.00 0.00 5.18
499 500 4.514577 CCCGTCCGATTCGCTGCT 62.515 66.667 0.00 0.00 0.00 4.24
500 501 2.956964 CCGTCCGATTCGCTGCTC 60.957 66.667 0.00 0.00 0.00 4.26
501 502 3.315521 CGTCCGATTCGCTGCTCG 61.316 66.667 0.00 0.00 40.15 5.03
502 503 2.202623 GTCCGATTCGCTGCTCGT 60.203 61.111 0.00 0.00 39.67 4.18
503 504 2.102357 TCCGATTCGCTGCTCGTC 59.898 61.111 0.00 0.00 39.67 4.20
504 505 2.956964 CCGATTCGCTGCTCGTCC 60.957 66.667 0.00 0.00 39.67 4.79
505 506 3.315521 CGATTCGCTGCTCGTCCG 61.316 66.667 0.00 0.00 39.67 4.79
506 507 3.621394 GATTCGCTGCTCGTCCGC 61.621 66.667 0.00 0.00 39.67 5.54
556 557 4.752879 GGCAGCCTCGCGGTGTTA 62.753 66.667 6.13 0.00 42.23 2.41
557 558 3.488090 GCAGCCTCGCGGTGTTAC 61.488 66.667 6.13 0.00 42.23 2.50
558 559 2.813908 CAGCCTCGCGGTGTTACC 60.814 66.667 6.13 0.00 35.15 2.85
559 560 4.078516 AGCCTCGCGGTGTTACCC 62.079 66.667 6.13 0.00 33.75 3.69
560 561 4.078516 GCCTCGCGGTGTTACCCT 62.079 66.667 6.13 0.00 33.75 4.34
561 562 2.183555 CCTCGCGGTGTTACCCTC 59.816 66.667 6.13 0.00 33.75 4.30
562 563 2.642254 CCTCGCGGTGTTACCCTCA 61.642 63.158 6.13 0.00 33.75 3.86
563 564 1.515954 CTCGCGGTGTTACCCTCAT 59.484 57.895 6.13 0.00 33.75 2.90
564 565 0.527817 CTCGCGGTGTTACCCTCATC 60.528 60.000 6.13 0.00 33.75 2.92
565 566 1.876714 CGCGGTGTTACCCTCATCG 60.877 63.158 0.00 0.00 41.55 3.84
566 567 1.217244 GCGGTGTTACCCTCATCGT 59.783 57.895 0.00 0.00 40.85 3.73
567 568 1.082117 GCGGTGTTACCCTCATCGTG 61.082 60.000 0.00 0.00 40.85 4.35
568 569 0.459585 CGGTGTTACCCTCATCGTGG 60.460 60.000 0.00 0.00 33.75 4.94
569 570 0.743345 GGTGTTACCCTCATCGTGGC 60.743 60.000 0.00 0.00 30.04 5.01
570 571 0.743345 GTGTTACCCTCATCGTGGCC 60.743 60.000 0.00 0.00 0.00 5.36
571 572 1.153229 GTTACCCTCATCGTGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
572 573 1.613928 TTACCCTCATCGTGGCCCA 60.614 57.895 0.00 0.00 0.00 5.36
573 574 1.622607 TTACCCTCATCGTGGCCCAG 61.623 60.000 0.00 0.00 0.00 4.45
574 575 4.864334 CCCTCATCGTGGCCCAGC 62.864 72.222 0.00 0.00 0.00 4.85
596 597 4.821589 CAGGAAGCCCGCCTCGAC 62.822 72.222 0.00 0.00 37.58 4.20
640 641 2.573869 CGAGAAGCGGGCTCTTCA 59.426 61.111 17.53 0.00 43.64 3.02
641 642 1.518133 CGAGAAGCGGGCTCTTCAG 60.518 63.158 17.53 10.12 43.64 3.02
642 643 1.813337 GAGAAGCGGGCTCTTCAGC 60.813 63.158 17.53 8.85 43.64 4.26
665 666 4.231753 CGACTTCCGCACGTACAA 57.768 55.556 0.00 0.00 0.00 2.41
666 667 1.771044 CGACTTCCGCACGTACAAC 59.229 57.895 0.00 0.00 0.00 3.32
667 668 1.611592 CGACTTCCGCACGTACAACC 61.612 60.000 0.00 0.00 0.00 3.77
668 669 1.287041 GACTTCCGCACGTACAACCC 61.287 60.000 0.00 0.00 0.00 4.11
669 670 2.030862 TTCCGCACGTACAACCCC 59.969 61.111 0.00 0.00 0.00 4.95
670 671 2.718747 CTTCCGCACGTACAACCCCA 62.719 60.000 0.00 0.00 0.00 4.96
671 672 2.280933 CCGCACGTACAACCCCAA 60.281 61.111 0.00 0.00 0.00 4.12
672 673 2.322081 CCGCACGTACAACCCCAAG 61.322 63.158 0.00 0.00 0.00 3.61
673 674 2.322081 CGCACGTACAACCCCAAGG 61.322 63.158 0.00 0.00 40.04 3.61
683 684 2.036256 CCCCAAGGTGAAGCCCTG 59.964 66.667 0.00 0.00 38.26 4.45
684 685 2.677875 CCCAAGGTGAAGCCCTGC 60.678 66.667 0.00 0.00 38.26 4.85
685 686 2.437897 CCAAGGTGAAGCCCTGCT 59.562 61.111 0.00 0.00 42.56 4.24
686 687 1.676967 CCAAGGTGAAGCCCTGCTC 60.677 63.158 0.00 0.00 38.25 4.26
687 688 1.676967 CAAGGTGAAGCCCTGCTCC 60.677 63.158 0.00 0.00 38.25 4.70
688 689 2.911926 AAGGTGAAGCCCTGCTCCC 61.912 63.158 0.00 0.00 38.25 4.30
689 690 4.785453 GGTGAAGCCCTGCTCCCG 62.785 72.222 0.00 0.00 38.25 5.14
690 691 4.021925 GTGAAGCCCTGCTCCCGT 62.022 66.667 0.00 0.00 38.25 5.28
691 692 4.020617 TGAAGCCCTGCTCCCGTG 62.021 66.667 0.00 0.00 38.25 4.94
696 697 3.399181 CCCTGCTCCCGTGCCTTA 61.399 66.667 0.00 0.00 0.00 2.69
697 698 2.125106 CCTGCTCCCGTGCCTTAC 60.125 66.667 0.00 0.00 0.00 2.34
698 699 2.660064 CCTGCTCCCGTGCCTTACT 61.660 63.158 0.00 0.00 0.00 2.24
699 700 1.296715 CTGCTCCCGTGCCTTACTT 59.703 57.895 0.00 0.00 0.00 2.24
700 701 0.741221 CTGCTCCCGTGCCTTACTTC 60.741 60.000 0.00 0.00 0.00 3.01
701 702 1.192146 TGCTCCCGTGCCTTACTTCT 61.192 55.000 0.00 0.00 0.00 2.85
702 703 0.036294 GCTCCCGTGCCTTACTTCTT 60.036 55.000 0.00 0.00 0.00 2.52
703 704 1.610886 GCTCCCGTGCCTTACTTCTTT 60.611 52.381 0.00 0.00 0.00 2.52
704 705 2.347731 CTCCCGTGCCTTACTTCTTTC 58.652 52.381 0.00 0.00 0.00 2.62
705 706 1.002773 TCCCGTGCCTTACTTCTTTCC 59.997 52.381 0.00 0.00 0.00 3.13
706 707 1.271163 CCCGTGCCTTACTTCTTTCCA 60.271 52.381 0.00 0.00 0.00 3.53
707 708 1.804748 CCGTGCCTTACTTCTTTCCAC 59.195 52.381 0.00 0.00 0.00 4.02
708 709 1.804748 CGTGCCTTACTTCTTTCCACC 59.195 52.381 0.00 0.00 0.00 4.61
709 710 1.804748 GTGCCTTACTTCTTTCCACCG 59.195 52.381 0.00 0.00 0.00 4.94
710 711 0.803117 GCCTTACTTCTTTCCACCGC 59.197 55.000 0.00 0.00 0.00 5.68
711 712 1.076332 CCTTACTTCTTTCCACCGCG 58.924 55.000 0.00 0.00 0.00 6.46
712 713 0.442699 CTTACTTCTTTCCACCGCGC 59.557 55.000 0.00 0.00 0.00 6.86
713 714 0.952010 TTACTTCTTTCCACCGCGCC 60.952 55.000 0.00 0.00 0.00 6.53
714 715 3.788766 CTTCTTTCCACCGCGCCG 61.789 66.667 0.00 0.00 0.00 6.46
729 730 3.680786 CCGCTGAGTCACACCCGA 61.681 66.667 0.00 0.00 0.00 5.14
730 731 2.126307 CGCTGAGTCACACCCGAG 60.126 66.667 0.00 0.00 0.00 4.63
731 732 2.433318 GCTGAGTCACACCCGAGC 60.433 66.667 0.00 0.00 0.00 5.03
732 733 2.936912 GCTGAGTCACACCCGAGCT 61.937 63.158 0.00 0.00 0.00 4.09
733 734 1.080230 CTGAGTCACACCCGAGCTG 60.080 63.158 0.00 0.00 0.00 4.24
734 735 2.433318 GAGTCACACCCGAGCTGC 60.433 66.667 0.00 0.00 0.00 5.25
735 736 2.919856 AGTCACACCCGAGCTGCT 60.920 61.111 0.00 0.00 0.00 4.24
736 737 1.595993 GAGTCACACCCGAGCTGCTA 61.596 60.000 0.15 0.00 0.00 3.49
737 738 0.972983 AGTCACACCCGAGCTGCTAT 60.973 55.000 0.15 0.00 0.00 2.97
738 739 0.807667 GTCACACCCGAGCTGCTATG 60.808 60.000 0.15 1.53 0.00 2.23
739 740 2.176273 CACACCCGAGCTGCTATGC 61.176 63.158 0.15 0.00 0.00 3.14
740 741 2.963854 CACCCGAGCTGCTATGCG 60.964 66.667 0.15 1.64 38.13 4.73
741 742 3.147595 ACCCGAGCTGCTATGCGA 61.148 61.111 0.15 0.00 38.13 5.10
742 743 2.355599 CCCGAGCTGCTATGCGAG 60.356 66.667 0.15 0.00 38.13 5.03
750 751 3.264897 GCTATGCGAGCCACCGTG 61.265 66.667 0.00 0.00 46.41 4.94
751 752 2.184322 CTATGCGAGCCACCGTGT 59.816 61.111 0.00 0.00 0.00 4.49
752 753 1.447838 CTATGCGAGCCACCGTGTT 60.448 57.895 0.00 0.00 0.00 3.32
753 754 1.695893 CTATGCGAGCCACCGTGTTG 61.696 60.000 0.00 0.00 0.00 3.33
756 757 4.012895 CGAGCCACCGTGTTGCAC 62.013 66.667 0.00 0.00 0.00 4.57
780 781 3.197790 CGAGGCCCTCGCACATTG 61.198 66.667 21.84 0.00 46.75 2.82
781 782 3.512516 GAGGCCCTCGCACATTGC 61.513 66.667 0.00 0.00 40.69 3.56
782 783 3.984193 GAGGCCCTCGCACATTGCT 62.984 63.158 0.00 0.00 42.25 3.91
783 784 3.064324 GGCCCTCGCACATTGCTT 61.064 61.111 0.00 0.00 42.25 3.91
784 785 1.748879 GGCCCTCGCACATTGCTTA 60.749 57.895 0.00 0.00 42.25 3.09
785 786 1.429423 GCCCTCGCACATTGCTTAC 59.571 57.895 0.00 0.00 42.25 2.34
786 787 1.026718 GCCCTCGCACATTGCTTACT 61.027 55.000 0.00 0.00 42.25 2.24
787 788 1.453155 CCCTCGCACATTGCTTACTT 58.547 50.000 0.00 0.00 42.25 2.24
788 789 1.812571 CCCTCGCACATTGCTTACTTT 59.187 47.619 0.00 0.00 42.25 2.66
789 790 3.006940 CCCTCGCACATTGCTTACTTTA 58.993 45.455 0.00 0.00 42.25 1.85
790 791 3.627577 CCCTCGCACATTGCTTACTTTAT 59.372 43.478 0.00 0.00 42.25 1.40
791 792 4.096382 CCCTCGCACATTGCTTACTTTATT 59.904 41.667 0.00 0.00 42.25 1.40
792 793 5.295787 CCCTCGCACATTGCTTACTTTATTA 59.704 40.000 0.00 0.00 42.25 0.98
793 794 6.192360 CCTCGCACATTGCTTACTTTATTAC 58.808 40.000 0.00 0.00 42.25 1.89
794 795 6.037172 CCTCGCACATTGCTTACTTTATTACT 59.963 38.462 0.00 0.00 42.25 2.24
795 796 6.771076 TCGCACATTGCTTACTTTATTACTG 58.229 36.000 0.00 0.00 42.25 2.74
796 797 6.370442 TCGCACATTGCTTACTTTATTACTGT 59.630 34.615 0.00 0.00 42.25 3.55
797 798 7.546316 TCGCACATTGCTTACTTTATTACTGTA 59.454 33.333 0.00 0.00 42.25 2.74
798 799 7.846107 CGCACATTGCTTACTTTATTACTGTAG 59.154 37.037 0.00 0.00 42.25 2.74
799 800 8.879759 GCACATTGCTTACTTTATTACTGTAGA 58.120 33.333 0.00 0.00 40.96 2.59
805 806 9.595823 TGCTTACTTTATTACTGTAGATGGAAC 57.404 33.333 0.00 0.00 0.00 3.62
806 807 9.819267 GCTTACTTTATTACTGTAGATGGAACT 57.181 33.333 0.00 0.00 0.00 3.01
816 817 7.045126 ACTGTAGATGGAACTGTAGATTAGC 57.955 40.000 0.00 0.00 0.00 3.09
817 818 6.041069 ACTGTAGATGGAACTGTAGATTAGCC 59.959 42.308 0.00 0.00 0.00 3.93
818 819 4.592485 AGATGGAACTGTAGATTAGCCG 57.408 45.455 0.00 0.00 0.00 5.52
819 820 3.961408 AGATGGAACTGTAGATTAGCCGT 59.039 43.478 0.00 0.00 0.00 5.68
863 864 2.734606 CGTAGTTGCGTTTCCATCTTGA 59.265 45.455 0.00 0.00 0.00 3.02
867 868 4.798574 AGTTGCGTTTCCATCTTGAAATC 58.201 39.130 0.00 0.00 36.68 2.17
869 870 3.420893 TGCGTTTCCATCTTGAAATCCT 58.579 40.909 0.00 0.00 36.68 3.24
870 871 4.584874 TGCGTTTCCATCTTGAAATCCTA 58.415 39.130 0.00 0.00 36.68 2.94
874 875 6.693113 GCGTTTCCATCTTGAAATCCTAATTC 59.307 38.462 0.00 0.00 36.68 2.17
880 881 7.059156 CCATCTTGAAATCCTAATTCCAGAGT 58.941 38.462 0.00 0.00 33.62 3.24
881 882 8.213679 CCATCTTGAAATCCTAATTCCAGAGTA 58.786 37.037 0.00 0.00 33.62 2.59
882 883 9.790344 CATCTTGAAATCCTAATTCCAGAGTAT 57.210 33.333 0.00 0.00 33.62 2.12
972 1023 6.455360 TGGGATTTCTGAATTCAGTTATGC 57.545 37.500 29.80 25.74 44.12 3.14
985 1040 4.641396 TCAGTTATGCGGCAGCTAAATAT 58.359 39.130 10.92 0.00 45.42 1.28
1008 1063 6.602410 TTGGATCCTTGATTTATGTTGCAA 57.398 33.333 14.23 0.00 0.00 4.08
1044 1099 0.249784 ATAGGCTCAGCATGCTGACG 60.250 55.000 39.86 33.16 46.80 4.35
1077 1132 1.209019 CTGTCCATCTTGGGGAGAGTG 59.791 57.143 0.00 0.00 40.10 3.51
1113 1168 1.811558 GCAAGGACAAGTGTGCTCTCA 60.812 52.381 5.90 0.00 46.21 3.27
1237 1293 4.761739 TGGAACAAGCTATGAAGTCTTTGG 59.238 41.667 0.00 0.00 31.92 3.28
1629 1686 6.038936 GTGATACTGGTTCCTACTCTCTCTTC 59.961 46.154 0.00 0.00 0.00 2.87
1676 1733 4.712337 ACTCTGTGTTCTAGAAATCGGGAT 59.288 41.667 6.78 0.00 0.00 3.85
1776 1833 0.671796 CCCCGTTGACCTTTGGTTTC 59.328 55.000 0.00 0.00 35.25 2.78
1788 1845 3.055385 CCTTTGGTTTCGTCCCATCTCTA 60.055 47.826 0.00 0.00 0.00 2.43
1806 1863 5.378332 TCTCTAGGGGAATTAGAACTCTCG 58.622 45.833 0.00 0.00 0.00 4.04
1890 1947 4.993584 GGCATACATACTCTCACATTGGAG 59.006 45.833 0.00 0.00 36.21 3.86
1912 1969 3.672767 TCCAAGGAGAAACCGTAAGTC 57.327 47.619 0.00 0.00 44.74 3.01
1916 2048 2.795329 AGGAGAAACCGTAAGTCCGTA 58.205 47.619 0.00 0.00 44.74 4.02
1920 2052 4.156008 GGAGAAACCGTAAGTCCGTAAGTA 59.844 45.833 0.00 0.00 0.00 2.24
1928 2061 6.024049 CCGTAAGTCCGTAAGTACTACTTTG 58.976 44.000 12.07 6.79 39.51 2.77
1942 2075 7.803724 AGTACTACTTTGTTTTCGCTAAATGG 58.196 34.615 0.00 0.00 0.00 3.16
1943 2076 6.628919 ACTACTTTGTTTTCGCTAAATGGT 57.371 33.333 0.00 0.00 0.00 3.55
1944 2077 7.733402 ACTACTTTGTTTTCGCTAAATGGTA 57.267 32.000 0.00 0.00 0.00 3.25
1945 2078 7.578852 ACTACTTTGTTTTCGCTAAATGGTAC 58.421 34.615 0.00 0.00 0.00 3.34
1946 2079 6.628919 ACTTTGTTTTCGCTAAATGGTACT 57.371 33.333 0.00 0.00 0.00 2.73
1947 2080 6.665465 ACTTTGTTTTCGCTAAATGGTACTC 58.335 36.000 0.00 0.00 0.00 2.59
1948 2081 5.616488 TTGTTTTCGCTAAATGGTACTCC 57.384 39.130 0.00 0.00 0.00 3.85
1949 2082 4.004982 TGTTTTCGCTAAATGGTACTCCC 58.995 43.478 0.00 0.00 0.00 4.30
1950 2083 4.259356 GTTTTCGCTAAATGGTACTCCCT 58.741 43.478 0.00 0.00 0.00 4.20
1951 2084 3.814005 TTCGCTAAATGGTACTCCCTC 57.186 47.619 0.00 0.00 0.00 4.30
1952 2085 2.037144 TCGCTAAATGGTACTCCCTCC 58.963 52.381 0.00 0.00 0.00 4.30
1953 2086 1.269621 CGCTAAATGGTACTCCCTCCG 60.270 57.143 0.00 0.00 0.00 4.63
1954 2087 1.761198 GCTAAATGGTACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
1955 2088 2.223994 GCTAAATGGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
1956 2089 1.201424 AAATGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
1957 2090 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
1958 2091 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
1959 2092 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
1960 2093 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
1961 2094 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1962 2095 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1963 2096 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1964 2097 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1965 2098 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1966 2099 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1967 2100 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1968 2101 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1969 2102 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1970 2103 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1971 2104 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1972 2105 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1973 2106 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1974 2107 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1975 2108 4.377022 CGTCCCAAAATAAGTGTCTCAACG 60.377 45.833 0.00 0.00 0.00 4.10
1976 2109 4.514066 GTCCCAAAATAAGTGTCTCAACGT 59.486 41.667 0.00 0.00 0.00 3.99
1977 2110 5.008316 GTCCCAAAATAAGTGTCTCAACGTT 59.992 40.000 0.00 0.00 0.00 3.99
1978 2111 6.203338 GTCCCAAAATAAGTGTCTCAACGTTA 59.797 38.462 0.00 0.00 0.00 3.18
1979 2112 6.425721 TCCCAAAATAAGTGTCTCAACGTTAG 59.574 38.462 0.00 0.00 0.00 2.34
1980 2113 6.425721 CCCAAAATAAGTGTCTCAACGTTAGA 59.574 38.462 0.00 1.87 0.00 2.10
1981 2114 7.041644 CCCAAAATAAGTGTCTCAACGTTAGAA 60.042 37.037 0.00 0.00 0.00 2.10
1982 2115 8.339714 CCAAAATAAGTGTCTCAACGTTAGAAA 58.660 33.333 0.00 0.00 0.00 2.52
1983 2116 9.710979 CAAAATAAGTGTCTCAACGTTAGAAAA 57.289 29.630 0.00 0.00 0.00 2.29
1985 2118 9.712359 AAATAAGTGTCTCAACGTTAGAAAAAC 57.288 29.630 0.00 4.89 0.00 2.43
1986 2119 6.980051 AAGTGTCTCAACGTTAGAAAAACT 57.020 33.333 0.00 6.79 0.00 2.66
1987 2120 6.980051 AGTGTCTCAACGTTAGAAAAACTT 57.020 33.333 0.00 0.00 0.00 2.66
1988 2121 7.373778 AGTGTCTCAACGTTAGAAAAACTTT 57.626 32.000 0.00 0.00 0.00 2.66
1989 2122 7.241376 AGTGTCTCAACGTTAGAAAAACTTTG 58.759 34.615 0.00 1.86 32.67 2.77
1990 2123 7.019418 GTGTCTCAACGTTAGAAAAACTTTGT 58.981 34.615 0.00 0.00 33.05 2.83
1991 2124 8.170553 GTGTCTCAACGTTAGAAAAACTTTGTA 58.829 33.333 0.00 0.00 33.05 2.41
1992 2125 8.170553 TGTCTCAACGTTAGAAAAACTTTGTAC 58.829 33.333 0.00 7.31 33.05 2.90
1993 2126 8.385858 GTCTCAACGTTAGAAAAACTTTGTACT 58.614 33.333 0.00 0.00 33.05 2.73
1994 2127 9.585099 TCTCAACGTTAGAAAAACTTTGTACTA 57.415 29.630 0.00 0.00 33.05 1.82
2017 2150 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
2018 2151 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
2019 2152 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
2020 2153 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2026 2159 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2027 2160 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2028 2161 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2029 2162 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2030 2163 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2031 2164 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2032 2165 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2033 2166 4.202377 TGAGACACTTATTTTGGGACGGAA 60.202 41.667 0.00 0.00 0.00 4.30
2034 2167 4.324267 AGACACTTATTTTGGGACGGAAG 58.676 43.478 0.00 0.00 0.00 3.46
2035 2168 3.418047 ACACTTATTTTGGGACGGAAGG 58.582 45.455 0.00 0.00 0.00 3.46
2036 2169 3.073356 ACACTTATTTTGGGACGGAAGGA 59.927 43.478 0.00 0.00 0.00 3.36
2056 2189 7.254692 GGAAGGAGTAGTTTATTTGGTATTCGC 60.255 40.741 0.00 0.00 0.00 4.70
2073 2207 3.719173 TCGCCATGTCGTCACATATAA 57.281 42.857 0.00 0.00 41.69 0.98
2102 2236 8.450578 AGTTATATCATGGGTGTGTTTATGTG 57.549 34.615 0.00 0.00 0.00 3.21
2103 2237 8.271458 AGTTATATCATGGGTGTGTTTATGTGA 58.729 33.333 0.00 0.00 0.00 3.58
2105 2239 5.643379 ATCATGGGTGTGTTTATGTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
2374 2538 9.780413 GATGTCTTTGTCCATATTTCTTTTCTC 57.220 33.333 0.00 0.00 0.00 2.87
2403 2567 4.545823 TTTGGAGCTTTAGTGTTTCACG 57.454 40.909 0.00 0.00 39.64 4.35
2417 2581 4.377738 GTGTTTCACGAATTTTAGCGGAAC 59.622 41.667 0.00 0.00 0.00 3.62
2623 2791 5.796935 CGCTGGATTTAAATCACTTGAACAG 59.203 40.000 25.55 20.86 37.15 3.16
2695 2863 7.285172 CAGAAGATAGTTCTGAGAGATGAGGAA 59.715 40.741 8.77 0.00 46.57 3.36
2767 3214 3.737663 CGAGGAAGGAAGATGAGCAAGAG 60.738 52.174 0.00 0.00 0.00 2.85
2897 3344 2.062971 CCAGGGATTGGGATGTTCTG 57.937 55.000 0.00 0.00 43.75 3.02
3025 3472 0.949105 CGTGGTGCAGTGGTTACTCC 60.949 60.000 0.00 0.00 34.07 3.85
3105 3552 2.740055 CGGGTGTGCTGTCTCTGC 60.740 66.667 0.00 0.00 0.00 4.26
3182 3629 6.972328 CACCGTCTTCTTTCTGAAAATTTCAA 59.028 34.615 9.85 0.00 39.58 2.69
3187 3634 8.737648 GTCTTCTTTCTGAAAATTTCAAGAACG 58.262 33.333 14.04 13.50 39.58 3.95
3202 3649 6.759497 TCAAGAACGATAGACAGATCTTGA 57.241 37.500 10.91 10.91 46.12 3.02
3224 3671 4.985538 AGACAAATCAGAGGCCTTTACAA 58.014 39.130 6.77 0.00 0.00 2.41
3227 3674 4.278419 ACAAATCAGAGGCCTTTACAACAC 59.722 41.667 6.77 0.00 0.00 3.32
3292 3739 4.929808 TGGAGACGAATCAAACTAAAGAGC 59.070 41.667 0.00 0.00 0.00 4.09
3357 3804 2.607282 CGTGAGTTGTGGAGTGAGGTAC 60.607 54.545 0.00 0.00 0.00 3.34
3358 3805 1.968493 TGAGTTGTGGAGTGAGGTACC 59.032 52.381 2.73 2.73 0.00 3.34
3359 3806 0.966920 AGTTGTGGAGTGAGGTACCG 59.033 55.000 6.18 0.00 0.00 4.02
3374 3957 2.829914 CCGATGGGTGTGGCCATG 60.830 66.667 9.72 0.00 39.65 3.66
3455 4038 2.900546 CACCTCCTCCTAAACAGACACT 59.099 50.000 0.00 0.00 0.00 3.55
3472 4055 2.049156 TGTGAAGACAGCGCTCCG 60.049 61.111 7.13 0.00 0.00 4.63
3486 4069 3.958147 CTCCGCACCGTCAATGCCT 62.958 63.158 0.00 0.00 40.09 4.75
3487 4070 3.803082 CCGCACCGTCAATGCCTG 61.803 66.667 0.00 0.00 40.09 4.85
3553 4136 3.306641 GCCAGGAACCTATCTGATGCTAG 60.307 52.174 0.00 0.00 33.11 3.42
3643 4234 2.004583 TTTTCCTCTACGGACGCATG 57.995 50.000 0.00 0.00 42.97 4.06
3678 4269 4.865698 GGTAGAAACCAATGGGACACCTAC 60.866 50.000 3.55 7.49 44.35 3.18
3705 4296 0.393537 CAGGACATGCAGGAGGAACC 60.394 60.000 4.84 0.37 39.35 3.62
3707 4298 0.678048 GGACATGCAGGAGGAACCAC 60.678 60.000 4.84 0.00 42.04 4.16
3738 4329 0.747255 GTGAGCTCGGCATTCCTAGA 59.253 55.000 9.64 0.00 0.00 2.43
3758 4349 2.494870 GAGAGGTGCCGAGGTTAGTAAA 59.505 50.000 0.00 0.00 0.00 2.01
3763 4354 3.592059 GTGCCGAGGTTAGTAAATGACA 58.408 45.455 0.00 0.00 0.00 3.58
3779 4370 1.883275 TGACACACCAATTTTAGGCCG 59.117 47.619 0.00 0.00 0.00 6.13
3784 4375 2.224670 ACACCAATTTTAGGCCGTCAGA 60.225 45.455 0.00 0.00 0.00 3.27
3795 4386 1.469767 GGCCGTCAGAAAATCAATGCC 60.470 52.381 0.00 0.00 0.00 4.40
3801 4392 4.171754 GTCAGAAAATCAATGCCTTGAGC 58.828 43.478 10.27 0.78 44.32 4.26
3859 4450 5.835113 TTAAGGATGGATTAGCTGTTTGC 57.165 39.130 0.00 0.00 43.29 3.68
3894 4485 0.109597 GAGCAGATTTTGTGTGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
3911 4502 5.007234 TGTGGCCGTTTATTTTCTCATATCG 59.993 40.000 0.00 0.00 0.00 2.92
3913 4504 6.201425 GTGGCCGTTTATTTTCTCATATCGTA 59.799 38.462 0.00 0.00 0.00 3.43
3995 4586 1.643868 GGCCACGTTCATGCGATGAA 61.644 55.000 0.00 7.27 46.30 2.57
4008 4599 3.200483 TGCGATGAATGAGAAGGTGATG 58.800 45.455 0.00 0.00 0.00 3.07
4009 4600 2.032204 GCGATGAATGAGAAGGTGATGC 60.032 50.000 0.00 0.00 0.00 3.91
4017 4608 0.400213 AGAAGGTGATGCGGAACCAA 59.600 50.000 0.35 0.00 39.05 3.67
4018 4609 1.004745 AGAAGGTGATGCGGAACCAAT 59.995 47.619 0.35 0.00 39.05 3.16
4019 4610 2.238646 AGAAGGTGATGCGGAACCAATA 59.761 45.455 0.35 0.00 39.05 1.90
4020 4611 3.117888 AGAAGGTGATGCGGAACCAATAT 60.118 43.478 0.35 0.00 39.05 1.28
4021 4612 4.102524 AGAAGGTGATGCGGAACCAATATA 59.897 41.667 0.35 0.00 39.05 0.86
4043 4634 9.720874 ATATATATGAGCTCTTGGTATCTTGGA 57.279 33.333 16.19 0.00 0.00 3.53
4044 4635 4.686191 ATGAGCTCTTGGTATCTTGGAG 57.314 45.455 16.19 0.00 0.00 3.86
4047 4638 3.205784 GCTCTTGGTATCTTGGAGCAT 57.794 47.619 8.14 0.00 45.79 3.79
4048 4639 2.877168 GCTCTTGGTATCTTGGAGCATG 59.123 50.000 8.14 0.00 45.79 4.06
4049 4640 3.683847 GCTCTTGGTATCTTGGAGCATGT 60.684 47.826 8.14 0.00 45.79 3.21
4050 4641 4.443457 GCTCTTGGTATCTTGGAGCATGTA 60.443 45.833 8.14 0.00 45.79 2.29
4051 4642 5.023533 TCTTGGTATCTTGGAGCATGTAC 57.976 43.478 0.00 0.00 0.00 2.90
4052 4643 4.469586 TCTTGGTATCTTGGAGCATGTACA 59.530 41.667 0.00 0.00 0.00 2.90
4053 4644 5.130975 TCTTGGTATCTTGGAGCATGTACAT 59.869 40.000 1.41 1.41 0.00 2.29
4054 4645 4.707105 TGGTATCTTGGAGCATGTACATG 58.293 43.478 28.07 28.07 41.60 3.21
4055 4646 4.164030 TGGTATCTTGGAGCATGTACATGT 59.836 41.667 31.10 20.28 40.80 3.21
4088 4679 7.619698 CCTTCTTCCCCTAAGGTAATTTGATTT 59.380 37.037 0.00 0.00 37.96 2.17
4125 4716 6.463995 TTATTTCAGGTTGCATGGTTATCC 57.536 37.500 0.00 0.00 0.00 2.59
4126 4717 2.435372 TCAGGTTGCATGGTTATCCC 57.565 50.000 0.00 0.00 0.00 3.85
4127 4718 1.024271 CAGGTTGCATGGTTATCCCG 58.976 55.000 0.00 0.00 35.15 5.14
4138 4729 4.829872 TGGTTATCCCGTGATGTTTAGT 57.170 40.909 0.00 0.00 35.15 2.24
4150 4741 6.814644 CCGTGATGTTTAGTGGTCAAGTTATA 59.185 38.462 0.00 0.00 0.00 0.98
4172 4938 1.318576 CGCACAAGGAGGAAAAAGGT 58.681 50.000 0.00 0.00 0.00 3.50
4180 4946 7.035612 CACAAGGAGGAAAAAGGTATAAATGC 58.964 38.462 0.00 0.00 0.00 3.56
4201 4967 5.383476 TGCTCATATCATCAGAGTCAGAGA 58.617 41.667 0.00 0.00 0.00 3.10
4206 4972 8.930846 TCATATCATCAGAGTCAGAGATGTTA 57.069 34.615 15.45 12.95 39.96 2.41
4207 4973 9.531158 TCATATCATCAGAGTCAGAGATGTTAT 57.469 33.333 15.45 14.09 39.96 1.89
4273 5039 2.926778 AGATCACTCTAGCAATGCCC 57.073 50.000 0.00 0.00 0.00 5.36
4275 5041 0.107456 ATCACTCTAGCAATGCCCGG 59.893 55.000 0.00 0.00 0.00 5.73
4329 5097 5.587844 AGTCCTTGCATTAGTCAGCTTATTG 59.412 40.000 0.00 0.00 0.00 1.90
4425 5193 0.689623 CAGGAGTTCCCAGCTTGAGT 59.310 55.000 0.00 0.00 37.41 3.41
4659 5438 7.438459 ACGCATGGTTAACAAGTCTATAAGATC 59.562 37.037 8.10 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.214957 ACACAATTTCTAGAATGTTCGTGAATA 57.785 29.630 22.47 4.95 0.00 1.75
44 45 8.099364 ACACAATTTCTAGAATGTTCGTGAAT 57.901 30.769 22.47 7.31 0.00 2.57
45 46 7.490962 ACACAATTTCTAGAATGTTCGTGAA 57.509 32.000 22.47 5.83 0.00 3.18
46 47 7.654116 TGTACACAATTTCTAGAATGTTCGTGA 59.346 33.333 22.47 6.33 0.00 4.35
47 48 7.792925 TGTACACAATTTCTAGAATGTTCGTG 58.207 34.615 13.22 16.67 0.00 4.35
48 49 7.956420 TGTACACAATTTCTAGAATGTTCGT 57.044 32.000 13.22 9.85 0.00 3.85
49 50 9.825972 AAATGTACACAATTTCTAGAATGTTCG 57.174 29.630 13.22 5.29 0.00 3.95
60 61 7.323656 CGTCTTCCAGAAAATGTACACAATTTC 59.676 37.037 16.88 16.88 42.87 2.17
61 62 7.138736 CGTCTTCCAGAAAATGTACACAATTT 58.861 34.615 0.00 0.00 32.17 1.82
62 63 6.262273 ACGTCTTCCAGAAAATGTACACAATT 59.738 34.615 0.00 0.00 0.00 2.32
63 64 5.763204 ACGTCTTCCAGAAAATGTACACAAT 59.237 36.000 0.00 0.00 0.00 2.71
64 65 5.007234 CACGTCTTCCAGAAAATGTACACAA 59.993 40.000 0.00 0.00 0.00 3.33
65 66 4.509970 CACGTCTTCCAGAAAATGTACACA 59.490 41.667 0.00 0.00 0.00 3.72
66 67 4.748102 TCACGTCTTCCAGAAAATGTACAC 59.252 41.667 0.00 0.00 0.00 2.90
67 68 4.951254 TCACGTCTTCCAGAAAATGTACA 58.049 39.130 0.00 0.00 0.00 2.90
68 69 5.917541 TTCACGTCTTCCAGAAAATGTAC 57.082 39.130 0.00 0.00 0.00 2.90
69 70 8.786826 AATATTCACGTCTTCCAGAAAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
70 71 7.687941 AATATTCACGTCTTCCAGAAAATGT 57.312 32.000 0.00 0.00 0.00 2.71
71 72 8.970691 AAAATATTCACGTCTTCCAGAAAATG 57.029 30.769 0.00 0.00 0.00 2.32
72 73 9.626045 GAAAAATATTCACGTCTTCCAGAAAAT 57.374 29.630 0.00 0.00 0.00 1.82
73 74 7.801315 CGAAAAATATTCACGTCTTCCAGAAAA 59.199 33.333 0.00 0.00 0.00 2.29
74 75 7.171848 TCGAAAAATATTCACGTCTTCCAGAAA 59.828 33.333 0.00 0.00 0.00 2.52
75 76 6.647481 TCGAAAAATATTCACGTCTTCCAGAA 59.353 34.615 0.00 0.00 0.00 3.02
76 77 6.160684 TCGAAAAATATTCACGTCTTCCAGA 58.839 36.000 0.00 0.00 0.00 3.86
77 78 6.403333 TCGAAAAATATTCACGTCTTCCAG 57.597 37.500 0.00 0.00 0.00 3.86
78 79 6.788684 TTCGAAAAATATTCACGTCTTCCA 57.211 33.333 0.00 0.00 0.00 3.53
79 80 8.669394 AATTTCGAAAAATATTCACGTCTTCC 57.331 30.769 15.66 0.00 33.93 3.46
82 83 9.893305 AGAAAATTTCGAAAAATATTCACGTCT 57.107 25.926 15.66 5.29 33.93 4.18
83 84 9.922951 CAGAAAATTTCGAAAAATATTCACGTC 57.077 29.630 15.66 3.34 33.93 4.34
84 85 9.672086 TCAGAAAATTTCGAAAAATATTCACGT 57.328 25.926 15.66 0.00 33.93 4.49
92 93 9.934190 CACCAAATTCAGAAAATTTCGAAAAAT 57.066 25.926 15.66 5.33 36.64 1.82
93 94 9.155975 TCACCAAATTCAGAAAATTTCGAAAAA 57.844 25.926 15.66 2.95 34.02 1.94
94 95 8.709386 TCACCAAATTCAGAAAATTTCGAAAA 57.291 26.923 15.66 0.00 34.02 2.29
95 96 8.885494 ATCACCAAATTCAGAAAATTTCGAAA 57.115 26.923 13.91 13.91 34.02 3.46
96 97 8.885494 AATCACCAAATTCAGAAAATTTCGAA 57.115 26.923 12.57 12.57 34.02 3.71
97 98 8.885494 AAATCACCAAATTCAGAAAATTTCGA 57.115 26.923 0.00 0.00 34.02 3.71
98 99 9.934190 AAAAATCACCAAATTCAGAAAATTTCG 57.066 25.926 0.00 0.00 34.02 3.46
201 202 9.906660 TCAAAAATAATGTTCGCTATTCAGTTT 57.093 25.926 0.00 0.00 0.00 2.66
202 203 9.906660 TTCAAAAATAATGTTCGCTATTCAGTT 57.093 25.926 0.00 0.00 0.00 3.16
203 204 9.906660 TTTCAAAAATAATGTTCGCTATTCAGT 57.093 25.926 0.00 0.00 0.00 3.41
209 210 9.684448 TCACAATTTCAAAAATAATGTTCGCTA 57.316 25.926 0.00 0.00 0.00 4.26
210 211 8.586570 TCACAATTTCAAAAATAATGTTCGCT 57.413 26.923 0.00 0.00 0.00 4.93
211 212 9.810231 AATCACAATTTCAAAAATAATGTTCGC 57.190 25.926 0.00 0.00 0.00 4.70
239 240 9.893634 AAATGATAATGCTCATGGATTCAAAAA 57.106 25.926 0.00 0.00 36.03 1.94
241 242 9.970395 GTAAATGATAATGCTCATGGATTCAAA 57.030 29.630 0.00 0.00 36.03 2.69
242 243 9.358406 AGTAAATGATAATGCTCATGGATTCAA 57.642 29.630 0.00 0.00 36.03 2.69
243 244 8.929260 AGTAAATGATAATGCTCATGGATTCA 57.071 30.769 0.00 0.00 36.03 2.57
247 248 9.625747 TGTTTAGTAAATGATAATGCTCATGGA 57.374 29.630 0.00 0.00 36.03 3.41
266 267 8.918961 TGTTCGTGATTTGAAAAATGTTTAGT 57.081 26.923 0.00 0.00 0.00 2.24
269 270 9.701355 GAATTGTTCGTGATTTGAAAAATGTTT 57.299 25.926 0.00 0.00 34.35 2.83
270 271 8.877779 TGAATTGTTCGTGATTTGAAAAATGTT 58.122 25.926 0.00 0.00 34.35 2.71
271 272 8.417780 TGAATTGTTCGTGATTTGAAAAATGT 57.582 26.923 0.00 0.00 34.35 2.71
272 273 9.146270 GTTGAATTGTTCGTGATTTGAAAAATG 57.854 29.630 0.00 0.00 34.35 2.32
273 274 8.877779 TGTTGAATTGTTCGTGATTTGAAAAAT 58.122 25.926 0.00 0.00 35.32 1.82
274 275 8.244494 TGTTGAATTGTTCGTGATTTGAAAAA 57.756 26.923 0.00 0.00 0.00 1.94
275 276 7.818493 TGTTGAATTGTTCGTGATTTGAAAA 57.182 28.000 0.00 0.00 0.00 2.29
276 277 8.417780 AATGTTGAATTGTTCGTGATTTGAAA 57.582 26.923 0.00 0.00 0.00 2.69
277 278 8.417780 AAATGTTGAATTGTTCGTGATTTGAA 57.582 26.923 0.00 0.00 0.00 2.69
278 279 8.417780 AAAATGTTGAATTGTTCGTGATTTGA 57.582 26.923 0.00 0.00 0.00 2.69
279 280 8.935941 CAAAAATGTTGAATTGTTCGTGATTTG 58.064 29.630 0.00 0.00 0.00 2.32
280 281 7.639461 GCAAAAATGTTGAATTGTTCGTGATTT 59.361 29.630 0.00 0.00 0.00 2.17
281 282 7.125113 GCAAAAATGTTGAATTGTTCGTGATT 58.875 30.769 0.00 0.00 0.00 2.57
282 283 6.257411 TGCAAAAATGTTGAATTGTTCGTGAT 59.743 30.769 0.00 0.00 0.00 3.06
283 284 5.578336 TGCAAAAATGTTGAATTGTTCGTGA 59.422 32.000 0.00 0.00 0.00 4.35
284 285 5.793675 TGCAAAAATGTTGAATTGTTCGTG 58.206 33.333 0.00 0.00 0.00 4.35
285 286 6.479660 AGATGCAAAAATGTTGAATTGTTCGT 59.520 30.769 0.00 0.00 0.00 3.85
286 287 6.879962 AGATGCAAAAATGTTGAATTGTTCG 58.120 32.000 0.00 0.00 0.00 3.95
287 288 9.505995 AAAAGATGCAAAAATGTTGAATTGTTC 57.494 25.926 0.00 0.00 0.00 3.18
288 289 9.857957 AAAAAGATGCAAAAATGTTGAATTGTT 57.142 22.222 0.00 0.00 0.00 2.83
289 290 9.505995 GAAAAAGATGCAAAAATGTTGAATTGT 57.494 25.926 0.00 0.00 0.00 2.71
290 291 9.724839 AGAAAAAGATGCAAAAATGTTGAATTG 57.275 25.926 0.00 0.00 0.00 2.32
291 292 9.724839 CAGAAAAAGATGCAAAAATGTTGAATT 57.275 25.926 0.00 0.00 0.00 2.17
292 293 9.111613 TCAGAAAAAGATGCAAAAATGTTGAAT 57.888 25.926 0.00 0.00 0.00 2.57
293 294 8.489990 TCAGAAAAAGATGCAAAAATGTTGAA 57.510 26.923 0.00 0.00 0.00 2.69
294 295 8.489990 TTCAGAAAAAGATGCAAAAATGTTGA 57.510 26.923 0.00 0.00 0.00 3.18
295 296 9.724839 ATTTCAGAAAAAGATGCAAAAATGTTG 57.275 25.926 0.00 0.00 0.00 3.33
296 297 9.940166 GATTTCAGAAAAAGATGCAAAAATGTT 57.060 25.926 0.00 0.00 0.00 2.71
297 298 8.562052 GGATTTCAGAAAAAGATGCAAAAATGT 58.438 29.630 0.00 0.00 0.00 2.71
298 299 8.019094 GGGATTTCAGAAAAAGATGCAAAAATG 58.981 33.333 0.00 0.00 0.00 2.32
299 300 7.720515 TGGGATTTCAGAAAAAGATGCAAAAAT 59.279 29.630 0.00 0.00 0.00 1.82
300 301 7.052873 TGGGATTTCAGAAAAAGATGCAAAAA 58.947 30.769 0.00 0.00 0.00 1.94
301 302 6.590068 TGGGATTTCAGAAAAAGATGCAAAA 58.410 32.000 0.00 0.00 0.00 2.44
302 303 6.172136 TGGGATTTCAGAAAAAGATGCAAA 57.828 33.333 0.00 0.00 0.00 3.68
303 304 5.804944 TGGGATTTCAGAAAAAGATGCAA 57.195 34.783 0.00 0.00 0.00 4.08
304 305 5.305128 ACTTGGGATTTCAGAAAAAGATGCA 59.695 36.000 10.71 0.00 0.00 3.96
305 306 5.787380 ACTTGGGATTTCAGAAAAAGATGC 58.213 37.500 10.71 0.00 0.00 3.91
306 307 9.933723 AATAACTTGGGATTTCAGAAAAAGATG 57.066 29.630 10.71 0.00 0.00 2.90
334 335 9.391006 TCTGTTTTCAGCTTCTTTACTTCTTAA 57.609 29.630 0.00 0.00 46.59 1.85
335 336 8.958119 TCTGTTTTCAGCTTCTTTACTTCTTA 57.042 30.769 0.00 0.00 46.59 2.10
336 337 7.865706 TCTGTTTTCAGCTTCTTTACTTCTT 57.134 32.000 0.00 0.00 46.59 2.52
337 338 7.865706 TTCTGTTTTCAGCTTCTTTACTTCT 57.134 32.000 0.00 0.00 46.59 2.85
338 339 8.911247 TTTTCTGTTTTCAGCTTCTTTACTTC 57.089 30.769 0.00 0.00 46.59 3.01
365 366 3.457560 GGGAGCCCCTTGTCTTTTT 57.542 52.632 3.16 0.00 41.34 1.94
397 398 2.280186 CGCTCTTATGGGCCGACC 60.280 66.667 0.00 0.00 40.81 4.79
398 399 2.967615 GCGCTCTTATGGGCCGAC 60.968 66.667 0.00 0.00 39.55 4.79
399 400 4.585526 CGCGCTCTTATGGGCCGA 62.586 66.667 5.56 0.00 41.93 5.54
440 441 1.299926 CTCCTATGTGGCGCCGTAC 60.300 63.158 23.90 16.41 35.26 3.67
441 442 3.125607 CTCCTATGTGGCGCCGTA 58.874 61.111 23.90 14.00 35.26 4.02
442 443 4.530857 GCTCCTATGTGGCGCCGT 62.531 66.667 23.90 13.13 40.51 5.68
445 446 3.816367 GAGGGCTCCTATGTGGCGC 62.816 68.421 0.00 0.00 45.35 6.53
446 447 2.423446 GAGGGCTCCTATGTGGCG 59.577 66.667 0.00 0.00 31.76 5.69
447 448 2.832498 GGAGGGCTCCTATGTGGC 59.168 66.667 0.00 0.00 46.16 5.01
456 457 0.106469 GGGGATTTTCTGGAGGGCTC 60.106 60.000 0.00 0.00 0.00 4.70
457 458 0.850883 TGGGGATTTTCTGGAGGGCT 60.851 55.000 0.00 0.00 0.00 5.19
458 459 0.041090 TTGGGGATTTTCTGGAGGGC 59.959 55.000 0.00 0.00 0.00 5.19
459 460 2.854736 ATTGGGGATTTTCTGGAGGG 57.145 50.000 0.00 0.00 0.00 4.30
460 461 3.033909 GGAATTGGGGATTTTCTGGAGG 58.966 50.000 0.00 0.00 0.00 4.30
461 462 3.033909 GGGAATTGGGGATTTTCTGGAG 58.966 50.000 0.00 0.00 0.00 3.86
462 463 2.292851 GGGGAATTGGGGATTTTCTGGA 60.293 50.000 0.00 0.00 0.00 3.86
463 464 2.118679 GGGGAATTGGGGATTTTCTGG 58.881 52.381 0.00 0.00 0.00 3.86
464 465 2.118679 GGGGGAATTGGGGATTTTCTG 58.881 52.381 0.00 0.00 0.00 3.02
465 466 1.342975 CGGGGGAATTGGGGATTTTCT 60.343 52.381 0.00 0.00 0.00 2.52
466 467 1.119684 CGGGGGAATTGGGGATTTTC 58.880 55.000 0.00 0.00 0.00 2.29
467 468 0.415830 ACGGGGGAATTGGGGATTTT 59.584 50.000 0.00 0.00 0.00 1.82
468 469 0.032515 GACGGGGGAATTGGGGATTT 60.033 55.000 0.00 0.00 0.00 2.17
469 470 1.618586 GACGGGGGAATTGGGGATT 59.381 57.895 0.00 0.00 0.00 3.01
470 471 2.391972 GGACGGGGGAATTGGGGAT 61.392 63.158 0.00 0.00 0.00 3.85
471 472 3.018805 GGACGGGGGAATTGGGGA 61.019 66.667 0.00 0.00 0.00 4.81
472 473 4.499633 CGGACGGGGGAATTGGGG 62.500 72.222 0.00 0.00 0.00 4.96
473 474 2.279037 AATCGGACGGGGGAATTGGG 62.279 60.000 0.00 0.00 0.00 4.12
474 475 0.818040 GAATCGGACGGGGGAATTGG 60.818 60.000 0.00 0.00 0.00 3.16
475 476 1.157870 CGAATCGGACGGGGGAATTG 61.158 60.000 0.00 0.00 0.00 2.32
476 477 1.145377 CGAATCGGACGGGGGAATT 59.855 57.895 0.00 0.00 0.00 2.17
477 478 2.819550 CGAATCGGACGGGGGAAT 59.180 61.111 0.00 0.00 0.00 3.01
478 479 4.151582 GCGAATCGGACGGGGGAA 62.152 66.667 4.35 0.00 0.00 3.97
480 481 4.891727 CAGCGAATCGGACGGGGG 62.892 72.222 4.35 0.00 0.00 5.40
482 483 4.514577 AGCAGCGAATCGGACGGG 62.515 66.667 4.35 0.00 0.00 5.28
483 484 2.956964 GAGCAGCGAATCGGACGG 60.957 66.667 4.35 0.00 0.00 4.79
484 485 3.315521 CGAGCAGCGAATCGGACG 61.316 66.667 4.35 0.00 44.57 4.79
485 486 2.202623 ACGAGCAGCGAATCGGAC 60.203 61.111 4.35 0.00 44.57 4.79
486 487 2.102357 GACGAGCAGCGAATCGGA 59.898 61.111 4.35 0.00 44.57 4.55
487 488 2.956964 GGACGAGCAGCGAATCGG 60.957 66.667 4.35 0.00 44.57 4.18
488 489 3.315521 CGGACGAGCAGCGAATCG 61.316 66.667 0.00 0.00 44.57 3.34
489 490 3.621394 GCGGACGAGCAGCGAATC 61.621 66.667 5.99 0.00 44.57 2.52
545 546 0.527817 GATGAGGGTAACACCGCGAG 60.528 60.000 8.23 1.37 39.83 5.03
546 547 1.514087 GATGAGGGTAACACCGCGA 59.486 57.895 8.23 0.00 39.83 5.87
547 548 1.876714 CGATGAGGGTAACACCGCG 60.877 63.158 0.00 0.00 39.83 6.46
548 549 1.082117 CACGATGAGGGTAACACCGC 61.082 60.000 0.00 0.00 39.83 5.68
549 550 0.459585 CCACGATGAGGGTAACACCG 60.460 60.000 0.00 0.00 39.83 4.94
550 551 0.743345 GCCACGATGAGGGTAACACC 60.743 60.000 0.00 0.00 37.60 4.16
551 552 0.743345 GGCCACGATGAGGGTAACAC 60.743 60.000 0.00 0.00 39.74 3.32
552 553 1.600107 GGCCACGATGAGGGTAACA 59.400 57.895 0.00 0.00 39.74 2.41
553 554 1.153229 GGGCCACGATGAGGGTAAC 60.153 63.158 4.39 0.00 0.00 2.50
554 555 1.613928 TGGGCCACGATGAGGGTAA 60.614 57.895 0.00 0.00 0.00 2.85
555 556 2.039787 TGGGCCACGATGAGGGTA 59.960 61.111 0.00 0.00 0.00 3.69
556 557 3.402681 CTGGGCCACGATGAGGGT 61.403 66.667 0.00 0.00 0.00 4.34
557 558 4.864334 GCTGGGCCACGATGAGGG 62.864 72.222 0.00 0.00 0.00 4.30
579 580 4.821589 GTCGAGGCGGGCTTCCTG 62.822 72.222 5.24 0.00 33.24 3.86
623 624 1.518133 CTGAAGAGCCCGCTTCTCG 60.518 63.158 11.94 1.76 43.60 4.04
624 625 1.813337 GCTGAAGAGCCCGCTTCTC 60.813 63.158 11.94 1.58 43.60 2.87
625 626 2.267324 GCTGAAGAGCCCGCTTCT 59.733 61.111 11.94 0.00 43.60 2.85
626 627 3.191539 CGCTGAAGAGCCCGCTTC 61.192 66.667 5.03 5.03 42.91 3.86
648 649 1.611592 GGTTGTACGTGCGGAAGTCG 61.612 60.000 0.00 0.00 42.76 4.18
649 650 1.287041 GGGTTGTACGTGCGGAAGTC 61.287 60.000 0.00 0.00 0.00 3.01
650 651 1.301165 GGGTTGTACGTGCGGAAGT 60.301 57.895 0.00 0.00 0.00 3.01
651 652 2.030958 GGGGTTGTACGTGCGGAAG 61.031 63.158 0.00 0.00 0.00 3.46
652 653 2.030862 GGGGTTGTACGTGCGGAA 59.969 61.111 0.00 0.00 0.00 4.30
653 654 2.718747 CTTGGGGTTGTACGTGCGGA 62.719 60.000 0.00 0.00 0.00 5.54
654 655 2.280933 TTGGGGTTGTACGTGCGG 60.281 61.111 0.00 0.00 0.00 5.69
655 656 2.322081 CCTTGGGGTTGTACGTGCG 61.322 63.158 0.00 0.00 0.00 5.34
656 657 1.228033 ACCTTGGGGTTGTACGTGC 60.228 57.895 0.00 0.00 44.73 5.34
657 658 0.107081 TCACCTTGGGGTTGTACGTG 59.893 55.000 0.00 0.00 44.73 4.49
658 659 0.838608 TTCACCTTGGGGTTGTACGT 59.161 50.000 0.00 0.00 44.73 3.57
659 660 1.519408 CTTCACCTTGGGGTTGTACG 58.481 55.000 0.00 0.00 44.73 3.67
660 661 1.244816 GCTTCACCTTGGGGTTGTAC 58.755 55.000 0.00 0.00 44.73 2.90
661 662 0.111639 GGCTTCACCTTGGGGTTGTA 59.888 55.000 0.00 0.00 44.73 2.41
662 663 1.152546 GGCTTCACCTTGGGGTTGT 60.153 57.895 0.00 0.00 44.73 3.32
663 664 1.908299 GGGCTTCACCTTGGGGTTG 60.908 63.158 0.00 0.00 44.73 3.77
664 665 2.091283 AGGGCTTCACCTTGGGGTT 61.091 57.895 0.00 0.00 44.73 4.11
666 667 2.036256 CAGGGCTTCACCTTGGGG 59.964 66.667 0.00 0.00 41.84 4.96
667 668 2.677875 GCAGGGCTTCACCTTGGG 60.678 66.667 0.00 0.00 45.65 4.12
668 669 1.676967 GAGCAGGGCTTCACCTTGG 60.677 63.158 0.00 0.00 45.65 3.61
670 671 2.759795 GGAGCAGGGCTTCACCTT 59.240 61.111 0.00 0.00 39.88 3.50
671 672 3.334054 GGGAGCAGGGCTTCACCT 61.334 66.667 0.00 0.00 39.88 4.00
672 673 4.785453 CGGGAGCAGGGCTTCACC 62.785 72.222 0.00 0.00 39.88 4.02
673 674 4.021925 ACGGGAGCAGGGCTTCAC 62.022 66.667 0.00 0.00 39.88 3.18
674 675 4.020617 CACGGGAGCAGGGCTTCA 62.021 66.667 0.00 0.00 39.88 3.02
679 680 3.399181 TAAGGCACGGGAGCAGGG 61.399 66.667 0.00 0.00 35.83 4.45
680 681 2.125106 GTAAGGCACGGGAGCAGG 60.125 66.667 0.00 0.00 35.83 4.85
681 682 0.741221 GAAGTAAGGCACGGGAGCAG 60.741 60.000 0.00 0.00 35.83 4.24
682 683 1.192146 AGAAGTAAGGCACGGGAGCA 61.192 55.000 0.00 0.00 35.83 4.26
683 684 0.036294 AAGAAGTAAGGCACGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
684 685 2.347731 GAAAGAAGTAAGGCACGGGAG 58.652 52.381 0.00 0.00 0.00 4.30
685 686 1.002773 GGAAAGAAGTAAGGCACGGGA 59.997 52.381 0.00 0.00 0.00 5.14
686 687 1.271163 TGGAAAGAAGTAAGGCACGGG 60.271 52.381 0.00 0.00 0.00 5.28
687 688 1.804748 GTGGAAAGAAGTAAGGCACGG 59.195 52.381 0.00 0.00 0.00 4.94
688 689 1.804748 GGTGGAAAGAAGTAAGGCACG 59.195 52.381 0.00 0.00 0.00 5.34
689 690 1.804748 CGGTGGAAAGAAGTAAGGCAC 59.195 52.381 0.00 0.00 0.00 5.01
690 691 1.880646 GCGGTGGAAAGAAGTAAGGCA 60.881 52.381 0.00 0.00 0.00 4.75
691 692 0.803117 GCGGTGGAAAGAAGTAAGGC 59.197 55.000 0.00 0.00 0.00 4.35
692 693 1.076332 CGCGGTGGAAAGAAGTAAGG 58.924 55.000 0.00 0.00 0.00 2.69
693 694 0.442699 GCGCGGTGGAAAGAAGTAAG 59.557 55.000 8.83 0.00 0.00 2.34
694 695 0.952010 GGCGCGGTGGAAAGAAGTAA 60.952 55.000 8.83 0.00 0.00 2.24
695 696 1.375013 GGCGCGGTGGAAAGAAGTA 60.375 57.895 8.83 0.00 0.00 2.24
696 697 2.668550 GGCGCGGTGGAAAGAAGT 60.669 61.111 8.83 0.00 0.00 3.01
697 698 3.788766 CGGCGCGGTGGAAAGAAG 61.789 66.667 8.83 0.00 0.00 2.85
712 713 3.633094 CTCGGGTGTGACTCAGCGG 62.633 68.421 7.67 7.67 44.48 5.52
713 714 2.126307 CTCGGGTGTGACTCAGCG 60.126 66.667 1.03 0.00 44.48 5.18
714 715 2.433318 GCTCGGGTGTGACTCAGC 60.433 66.667 0.00 0.00 43.02 4.26
715 716 1.080230 CAGCTCGGGTGTGACTCAG 60.080 63.158 0.00 0.00 0.00 3.35
716 717 3.051210 CAGCTCGGGTGTGACTCA 58.949 61.111 0.00 0.00 0.00 3.41
717 718 1.595993 TAGCAGCTCGGGTGTGACTC 61.596 60.000 0.00 0.00 33.19 3.36
718 719 0.972983 ATAGCAGCTCGGGTGTGACT 60.973 55.000 0.00 0.00 33.19 3.41
719 720 0.807667 CATAGCAGCTCGGGTGTGAC 60.808 60.000 0.00 0.00 33.19 3.67
720 721 1.517361 CATAGCAGCTCGGGTGTGA 59.483 57.895 0.00 0.00 33.19 3.58
721 722 2.176273 GCATAGCAGCTCGGGTGTG 61.176 63.158 0.00 0.00 33.19 3.82
722 723 2.187946 GCATAGCAGCTCGGGTGT 59.812 61.111 0.00 0.00 33.19 4.16
723 724 2.963854 CGCATAGCAGCTCGGGTG 60.964 66.667 0.00 0.00 0.00 4.61
724 725 3.144120 CTCGCATAGCAGCTCGGGT 62.144 63.158 0.00 0.00 0.00 5.28
725 726 2.355599 CTCGCATAGCAGCTCGGG 60.356 66.667 0.00 0.00 0.00 5.14
734 735 1.447838 AACACGGTGGCTCGCATAG 60.448 57.895 13.48 0.00 0.00 2.23
735 736 1.739929 CAACACGGTGGCTCGCATA 60.740 57.895 13.48 0.00 0.00 3.14
736 737 3.049674 CAACACGGTGGCTCGCAT 61.050 61.111 13.48 0.00 0.00 4.73
739 740 4.012895 GTGCAACACGGTGGCTCG 62.013 66.667 13.48 0.00 32.93 5.03
764 765 3.512516 GCAATGTGCGAGGGCCTC 61.513 66.667 24.06 24.06 38.85 4.70
773 774 8.879759 TCTACAGTAATAAAGTAAGCAATGTGC 58.120 33.333 0.00 0.00 45.46 4.57
779 780 9.595823 GTTCCATCTACAGTAATAAAGTAAGCA 57.404 33.333 0.00 0.00 0.00 3.91
780 781 9.819267 AGTTCCATCTACAGTAATAAAGTAAGC 57.181 33.333 0.00 0.00 0.00 3.09
790 791 8.630917 GCTAATCTACAGTTCCATCTACAGTAA 58.369 37.037 0.00 0.00 0.00 2.24
791 792 7.230913 GGCTAATCTACAGTTCCATCTACAGTA 59.769 40.741 0.00 0.00 0.00 2.74
792 793 6.041069 GGCTAATCTACAGTTCCATCTACAGT 59.959 42.308 0.00 0.00 0.00 3.55
793 794 6.451393 GGCTAATCTACAGTTCCATCTACAG 58.549 44.000 0.00 0.00 0.00 2.74
794 795 5.009710 CGGCTAATCTACAGTTCCATCTACA 59.990 44.000 0.00 0.00 0.00 2.74
795 796 5.009811 ACGGCTAATCTACAGTTCCATCTAC 59.990 44.000 0.00 0.00 0.00 2.59
796 797 5.138276 ACGGCTAATCTACAGTTCCATCTA 58.862 41.667 0.00 0.00 0.00 1.98
797 798 3.961408 ACGGCTAATCTACAGTTCCATCT 59.039 43.478 0.00 0.00 0.00 2.90
798 799 4.202121 TGACGGCTAATCTACAGTTCCATC 60.202 45.833 0.00 0.00 0.00 3.51
799 800 3.704566 TGACGGCTAATCTACAGTTCCAT 59.295 43.478 0.00 0.00 0.00 3.41
800 801 3.093814 TGACGGCTAATCTACAGTTCCA 58.906 45.455 0.00 0.00 0.00 3.53
801 802 3.380637 TCTGACGGCTAATCTACAGTTCC 59.619 47.826 0.00 0.00 0.00 3.62
802 803 4.634184 TCTGACGGCTAATCTACAGTTC 57.366 45.455 0.00 0.00 0.00 3.01
803 804 5.127194 TCAATCTGACGGCTAATCTACAGTT 59.873 40.000 0.00 0.00 0.00 3.16
804 805 4.645136 TCAATCTGACGGCTAATCTACAGT 59.355 41.667 0.00 0.00 0.00 3.55
805 806 5.188327 TCAATCTGACGGCTAATCTACAG 57.812 43.478 0.00 0.00 0.00 2.74
806 807 5.791336 ATCAATCTGACGGCTAATCTACA 57.209 39.130 0.00 0.00 0.00 2.74
807 808 6.915349 AGTATCAATCTGACGGCTAATCTAC 58.085 40.000 0.00 0.00 0.00 2.59
808 809 8.631480 TTAGTATCAATCTGACGGCTAATCTA 57.369 34.615 0.00 0.00 0.00 1.98
809 810 7.526142 TTAGTATCAATCTGACGGCTAATCT 57.474 36.000 0.00 0.00 0.00 2.40
810 811 8.029522 TGATTAGTATCAATCTGACGGCTAATC 58.970 37.037 18.12 18.12 40.37 1.75
811 812 7.896811 TGATTAGTATCAATCTGACGGCTAAT 58.103 34.615 0.00 0.00 37.83 1.73
812 813 7.284919 TGATTAGTATCAATCTGACGGCTAA 57.715 36.000 0.00 0.00 37.83 3.09
813 814 6.894339 TGATTAGTATCAATCTGACGGCTA 57.106 37.500 0.00 0.00 37.83 3.93
814 815 5.791336 TGATTAGTATCAATCTGACGGCT 57.209 39.130 0.00 0.00 37.83 5.52
909 958 7.167468 CACACATTCGACATGAACGATAATCTA 59.833 37.037 16.79 5.41 40.00 1.98
917 966 1.464023 GCCACACATTCGACATGAACG 60.464 52.381 0.00 5.16 40.00 3.95
972 1023 3.679389 AGGATCCAATATTTAGCTGCCG 58.321 45.455 15.82 0.00 0.00 5.69
985 1040 6.014755 TGTTGCAACATAAATCAAGGATCCAA 60.015 34.615 27.96 0.00 33.17 3.53
1008 1063 2.607187 CTATCTTCGCCGTTCAGTTGT 58.393 47.619 0.00 0.00 0.00 3.32
1044 1099 7.175641 CCCAAGATGGACAGTAAAATATCATCC 59.824 40.741 0.00 0.00 40.96 3.51
1077 1132 0.942410 TTGCAGCCGTACGTGAACTC 60.942 55.000 15.21 0.00 0.00 3.01
1088 1143 1.893808 ACACTTGTCCTTGCAGCCG 60.894 57.895 0.00 0.00 0.00 5.52
1113 1168 1.237285 GCAGATGCTTCCACCGTGTT 61.237 55.000 0.00 0.00 38.21 3.32
1237 1293 0.752658 AAACTCCTGGTTGCTTTGGC 59.247 50.000 0.00 0.00 38.29 4.52
1271 1327 6.478512 AACTTGAGATAGTGGATTCTCTCC 57.521 41.667 0.00 0.00 45.19 3.71
1629 1686 3.340928 TGAGTCTGGTGCATCAATCTTG 58.659 45.455 0.00 0.00 0.00 3.02
1676 1733 2.030274 TCGATTCTCAGAAAGCGACACA 60.030 45.455 10.65 0.00 41.58 3.72
1788 1845 3.195825 CACACGAGAGTTCTAATTCCCCT 59.804 47.826 0.00 0.00 46.40 4.79
1806 1863 2.221169 TGCTCACAATCTGAACCACAC 58.779 47.619 0.00 0.00 0.00 3.82
1839 1896 5.725362 ACTCCATGTAGAAGCTCACTTAAC 58.275 41.667 0.00 0.00 35.82 2.01
1890 1947 3.736720 ACTTACGGTTTCTCCTTGGAAC 58.263 45.455 0.00 0.00 0.00 3.62
1912 1969 5.403466 AGCGAAAACAAAGTAGTACTTACGG 59.597 40.000 15.84 10.92 37.47 4.02
1916 2048 8.287503 CCATTTAGCGAAAACAAAGTAGTACTT 58.712 33.333 9.85 9.85 40.80 2.24
1920 2052 6.628919 ACCATTTAGCGAAAACAAAGTAGT 57.371 33.333 0.00 0.00 0.00 2.73
1928 2061 4.259356 AGGGAGTACCATTTAGCGAAAAC 58.741 43.478 0.00 0.00 43.89 2.43
1942 2075 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1943 2076 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1944 2077 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1945 2078 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1946 2079 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1947 2080 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1948 2081 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1949 2082 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1950 2083 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1951 2084 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1952 2085 4.377022 CGTTGAGACACTTATTTTGGGACG 60.377 45.833 0.00 0.00 0.00 4.79
1953 2086 4.514066 ACGTTGAGACACTTATTTTGGGAC 59.486 41.667 0.00 0.00 0.00 4.46
1954 2087 4.710324 ACGTTGAGACACTTATTTTGGGA 58.290 39.130 0.00 0.00 0.00 4.37
1955 2088 5.432885 AACGTTGAGACACTTATTTTGGG 57.567 39.130 0.00 0.00 0.00 4.12
1956 2089 7.416154 TCTAACGTTGAGACACTTATTTTGG 57.584 36.000 11.99 0.00 0.00 3.28
1957 2090 9.710979 TTTTCTAACGTTGAGACACTTATTTTG 57.289 29.630 11.99 0.00 0.00 2.44
1959 2092 9.712359 GTTTTTCTAACGTTGAGACACTTATTT 57.288 29.630 11.99 0.00 0.00 1.40
1960 2093 9.106070 AGTTTTTCTAACGTTGAGACACTTATT 57.894 29.630 11.99 0.00 0.00 1.40
1961 2094 8.658499 AGTTTTTCTAACGTTGAGACACTTAT 57.342 30.769 11.99 0.00 0.00 1.73
1962 2095 8.483307 AAGTTTTTCTAACGTTGAGACACTTA 57.517 30.769 11.99 0.00 0.00 2.24
1963 2096 6.980051 AGTTTTTCTAACGTTGAGACACTT 57.020 33.333 11.99 0.00 0.00 3.16
1964 2097 6.980051 AAGTTTTTCTAACGTTGAGACACT 57.020 33.333 11.99 7.49 0.00 3.55
1965 2098 7.019418 ACAAAGTTTTTCTAACGTTGAGACAC 58.981 34.615 11.99 5.45 40.42 3.67
1966 2099 7.136289 ACAAAGTTTTTCTAACGTTGAGACA 57.864 32.000 11.99 0.66 40.42 3.41
1967 2100 8.385858 AGTACAAAGTTTTTCTAACGTTGAGAC 58.614 33.333 11.99 15.20 40.42 3.36
1968 2101 8.483307 AGTACAAAGTTTTTCTAACGTTGAGA 57.517 30.769 11.99 7.18 40.42 3.27
1991 2124 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
1992 2125 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
1993 2126 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
1994 2127 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2000 2133 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2001 2134 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2002 2135 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2003 2136 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2004 2137 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2005 2138 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2006 2139 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2007 2140 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2008 2141 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2009 2142 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2010 2143 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2011 2144 3.934068 TCCGTCCCAAAATAAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
2012 2145 4.324267 CTTCCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
2013 2146 3.439129 CCTTCCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
2014 2147 3.073356 TCCTTCCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
2015 2148 3.681593 TCCTTCCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
2016 2149 3.329814 ACTCCTTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2017 2150 3.951663 ACTCCTTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2018 2151 4.533311 ACTACTCCTTCCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
2019 2152 4.098894 ACTACTCCTTCCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2020 2153 2.910977 ACTACTCCTTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2021 2154 2.332117 ACTACTCCTTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2022 2155 2.019807 ACTACTCCTTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2023 2156 2.019807 AACTACTCCTTCCGTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
2024 2157 2.019807 AAACTACTCCTTCCGTCCCA 57.980 50.000 0.00 0.00 0.00 4.37
2025 2158 4.750021 AATAAACTACTCCTTCCGTCCC 57.250 45.455 0.00 0.00 0.00 4.46
2026 2159 4.874396 CCAAATAAACTACTCCTTCCGTCC 59.126 45.833 0.00 0.00 0.00 4.79
2027 2160 5.485620 ACCAAATAAACTACTCCTTCCGTC 58.514 41.667 0.00 0.00 0.00 4.79
2028 2161 5.494390 ACCAAATAAACTACTCCTTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2029 2162 7.042925 CGAATACCAAATAAACTACTCCTTCCG 60.043 40.741 0.00 0.00 0.00 4.30
2030 2163 7.254692 GCGAATACCAAATAAACTACTCCTTCC 60.255 40.741 0.00 0.00 0.00 3.46
2031 2164 7.254692 GGCGAATACCAAATAAACTACTCCTTC 60.255 40.741 0.00 0.00 0.00 3.46
2032 2165 6.541278 GGCGAATACCAAATAAACTACTCCTT 59.459 38.462 0.00 0.00 0.00 3.36
2033 2166 6.053650 GGCGAATACCAAATAAACTACTCCT 58.946 40.000 0.00 0.00 0.00 3.69
2034 2167 5.818857 TGGCGAATACCAAATAAACTACTCC 59.181 40.000 0.00 0.00 36.55 3.85
2035 2168 6.913873 TGGCGAATACCAAATAAACTACTC 57.086 37.500 0.00 0.00 36.55 2.59
2036 2169 6.826741 ACATGGCGAATACCAAATAAACTACT 59.173 34.615 0.00 0.00 44.65 2.57
2056 2189 7.539712 AACTTTCTTATATGTGACGACATGG 57.460 36.000 0.00 0.00 43.03 3.66
2073 2207 9.920946 ATAAACACACCCATGATATAACTTTCT 57.079 29.630 0.00 0.00 0.00 2.52
2140 2280 8.004087 AGAATTGATAGTTTGCAAGCACATAT 57.996 30.769 16.04 4.77 0.00 1.78
2187 2335 0.459934 TGCAACCAAAGCTGCACAAC 60.460 50.000 1.02 0.00 43.44 3.32
2188 2336 1.895966 TGCAACCAAAGCTGCACAA 59.104 47.368 1.02 0.00 43.44 3.33
2189 2337 3.613527 TGCAACCAAAGCTGCACA 58.386 50.000 1.02 0.00 43.44 4.57
2403 2567 6.973006 TTAAACAACGTTCCGCTAAAATTC 57.027 33.333 0.00 0.00 0.00 2.17
2417 2581 6.531948 TCATTGGAACCAAGTTTTAAACAACG 59.468 34.615 10.60 0.00 39.47 4.10
2481 2649 0.588252 GCCCACATCGCATGTATGTC 59.412 55.000 11.49 0.69 42.70 3.06
2643 2811 1.628340 TGGGAGATCGTTCCAACATGT 59.372 47.619 0.00 0.00 39.09 3.21
2767 3214 4.058817 CTCTAATCCGCTTAACCACCATC 58.941 47.826 0.00 0.00 0.00 3.51
2835 3282 9.811995 AAATTGTTTGGAATGAGATATGTCATG 57.188 29.630 15.54 0.00 37.24 3.07
2914 3361 5.804639 TGTTCATAGTGCTGGTTGTAAGAT 58.195 37.500 0.00 0.00 0.00 2.40
3005 3452 0.249741 GAGTAACCACTGCACCACGT 60.250 55.000 0.00 0.00 34.21 4.49
3008 3455 2.534038 TGGAGTAACCACTGCACCA 58.466 52.632 0.00 0.00 46.88 4.17
3105 3552 2.213499 AGAAGACAAGTTTGCTCGGTG 58.787 47.619 0.00 0.00 0.00 4.94
3182 3629 5.883115 TGTCTCAAGATCTGTCTATCGTTCT 59.117 40.000 0.00 0.00 33.30 3.01
3187 3634 8.412456 TCTGATTTGTCTCAAGATCTGTCTATC 58.588 37.037 0.00 0.00 33.30 2.08
3202 3649 4.640771 TGTAAAGGCCTCTGATTTGTCT 57.359 40.909 5.23 0.00 0.00 3.41
3224 3671 8.248253 GGAATTATTTCCCAGTTATTTTCGTGT 58.752 33.333 5.24 0.00 44.96 4.49
3292 3739 3.941483 CCCTGTCCTTATGTAAGCTTGTG 59.059 47.826 9.86 0.00 32.02 3.33
3357 3804 2.829914 CATGGCCACACCCATCGG 60.830 66.667 8.16 0.00 43.63 4.18
3358 3805 2.045045 ACATGGCCACACCCATCG 60.045 61.111 8.16 0.00 43.63 3.84
3359 3806 0.749454 GAGACATGGCCACACCCATC 60.749 60.000 8.16 0.00 43.63 3.51
3455 4038 2.049156 CGGAGCGCTGTCTTCACA 60.049 61.111 18.48 0.00 0.00 3.58
3472 4055 3.332493 CTGCAGGCATTGACGGTGC 62.332 63.158 5.57 0.00 41.78 5.01
3487 4070 2.981909 TGTCAGGCTGCTTGCTGC 60.982 61.111 10.34 14.62 42.39 5.25
3527 4110 0.531532 CAGATAGGTTCCTGGCAGCG 60.532 60.000 9.56 2.56 0.00 5.18
3553 4136 2.223876 TGTCGGTGTAGTCTTTGTGGAC 60.224 50.000 0.00 0.00 36.56 4.02
3667 4258 3.021695 CTGACTTATCGTAGGTGTCCCA 58.978 50.000 0.00 0.00 0.00 4.37
3678 4269 2.101415 TCCTGCATGTCCTGACTTATCG 59.899 50.000 0.00 0.00 0.00 2.92
3705 4296 1.715585 CTCACAATAAGCCGCCGTG 59.284 57.895 0.00 0.00 0.00 4.94
3707 4298 1.766143 GAGCTCACAATAAGCCGCCG 61.766 60.000 9.40 0.00 40.75 6.46
3738 4329 2.226962 TTACTAACCTCGGCACCTCT 57.773 50.000 0.00 0.00 0.00 3.69
3758 4349 2.491693 CGGCCTAAAATTGGTGTGTCAT 59.508 45.455 0.00 0.00 0.00 3.06
3763 4354 2.159382 CTGACGGCCTAAAATTGGTGT 58.841 47.619 0.00 0.00 0.00 4.16
3779 4370 4.171754 GCTCAAGGCATTGATTTTCTGAC 58.828 43.478 15.02 0.00 44.32 3.51
3784 4375 2.170166 TCCGCTCAAGGCATTGATTTT 58.830 42.857 15.02 0.00 44.32 1.82
3795 4386 1.302033 AGCACTGGTTCCGCTCAAG 60.302 57.895 0.00 0.00 0.00 3.02
3801 4392 2.154462 AGAATTTGAGCACTGGTTCCG 58.846 47.619 0.00 0.00 0.00 4.30
3803 4394 3.691609 CCCTAGAATTTGAGCACTGGTTC 59.308 47.826 0.00 0.00 0.00 3.62
3804 4395 3.330701 TCCCTAGAATTTGAGCACTGGTT 59.669 43.478 0.00 0.00 0.00 3.67
3805 4396 2.912956 TCCCTAGAATTTGAGCACTGGT 59.087 45.455 0.00 0.00 0.00 4.00
3870 4461 4.479619 GCCACACAAAATCTGCTCTTAAG 58.520 43.478 0.00 0.00 0.00 1.85
3874 4465 1.251251 GGCCACACAAAATCTGCTCT 58.749 50.000 0.00 0.00 0.00 4.09
3911 4502 8.942338 AATTGGAAAGAAACAAGGAAAACTAC 57.058 30.769 0.00 0.00 0.00 2.73
3913 4504 8.862325 AAAATTGGAAAGAAACAAGGAAAACT 57.138 26.923 0.00 0.00 0.00 2.66
3942 4533 8.624776 GCTCAGTTTAGTGATTTAGCCAATAAT 58.375 33.333 0.00 0.00 0.00 1.28
3947 4538 4.695455 GTGCTCAGTTTAGTGATTTAGCCA 59.305 41.667 0.00 0.00 0.00 4.75
3964 4555 4.648626 GTGGCCCTGCTGTGCTCA 62.649 66.667 0.00 0.00 0.00 4.26
3995 4586 1.407437 GGTTCCGCATCACCTTCTCAT 60.407 52.381 0.00 0.00 0.00 2.90
4008 4599 5.665459 AGAGCTCATATATATTGGTTCCGC 58.335 41.667 17.77 0.00 0.00 5.54
4009 4600 6.536582 CCAAGAGCTCATATATATTGGTTCCG 59.463 42.308 17.77 0.00 32.82 4.30
4017 4608 9.720874 TCCAAGATACCAAGAGCTCATATATAT 57.279 33.333 17.77 6.85 0.00 0.86
4018 4609 9.194972 CTCCAAGATACCAAGAGCTCATATATA 57.805 37.037 17.77 1.86 0.00 0.86
4019 4610 7.364585 GCTCCAAGATACCAAGAGCTCATATAT 60.365 40.741 17.77 7.92 45.11 0.86
4020 4611 6.071108 GCTCCAAGATACCAAGAGCTCATATA 60.071 42.308 17.77 2.98 45.11 0.86
4021 4612 5.279910 GCTCCAAGATACCAAGAGCTCATAT 60.280 44.000 17.77 7.92 45.11 1.78
4043 4634 0.748005 GGCGGGAACATGTACATGCT 60.748 55.000 31.19 22.20 42.39 3.79
4044 4635 1.724582 GGGCGGGAACATGTACATGC 61.725 60.000 31.19 18.22 42.39 4.06
4047 4638 0.035820 GAAGGGCGGGAACATGTACA 60.036 55.000 0.00 0.00 0.00 2.90
4048 4639 0.252197 AGAAGGGCGGGAACATGTAC 59.748 55.000 0.00 0.00 0.00 2.90
4049 4640 0.988832 AAGAAGGGCGGGAACATGTA 59.011 50.000 0.00 0.00 0.00 2.29
4050 4641 0.322546 GAAGAAGGGCGGGAACATGT 60.323 55.000 0.00 0.00 0.00 3.21
4051 4642 1.032114 GGAAGAAGGGCGGGAACATG 61.032 60.000 0.00 0.00 0.00 3.21
4052 4643 1.303282 GGAAGAAGGGCGGGAACAT 59.697 57.895 0.00 0.00 0.00 2.71
4053 4644 2.754375 GGAAGAAGGGCGGGAACA 59.246 61.111 0.00 0.00 0.00 3.18
4054 4645 2.045242 GGGAAGAAGGGCGGGAAC 60.045 66.667 0.00 0.00 0.00 3.62
4055 4646 2.480255 TAGGGGAAGAAGGGCGGGAA 62.480 60.000 0.00 0.00 0.00 3.97
4088 4679 1.198178 GAAATAAGCGAACCGTTGCCA 59.802 47.619 0.00 0.00 0.00 4.92
4125 4716 3.399330 ACTTGACCACTAAACATCACGG 58.601 45.455 0.00 0.00 0.00 4.94
4126 4717 6.721571 ATAACTTGACCACTAAACATCACG 57.278 37.500 0.00 0.00 0.00 4.35
4127 4718 8.870879 GTCTATAACTTGACCACTAAACATCAC 58.129 37.037 0.00 0.00 0.00 3.06
4138 4729 3.945981 TGTGCGTCTATAACTTGACCA 57.054 42.857 0.00 0.00 0.00 4.02
4150 4741 2.222027 CTTTTTCCTCCTTGTGCGTCT 58.778 47.619 0.00 0.00 0.00 4.18
4180 4946 7.457024 ACATCTCTGACTCTGATGATATGAG 57.543 40.000 10.50 0.00 39.72 2.90
4246 5012 5.766150 TTGCTAGAGTGATCTAGAAGCTC 57.234 43.478 14.87 11.08 41.56 4.09
4250 5016 4.039730 GGGCATTGCTAGAGTGATCTAGAA 59.960 45.833 14.87 2.92 41.56 2.10
4252 5018 3.613671 CGGGCATTGCTAGAGTGATCTAG 60.614 52.174 8.82 7.75 41.84 2.43
4266 5032 4.899502 ACTAGAAGAATATCCGGGCATTG 58.100 43.478 0.00 0.00 0.00 2.82
4273 5039 9.125906 CGTTTATACCAACTAGAAGAATATCCG 57.874 37.037 0.00 0.00 0.00 4.18
4329 5097 8.837389 GTCCAGTAGGGTATATCAAATTTTCAC 58.163 37.037 0.00 0.00 38.11 3.18
4425 5193 2.616960 CCGACTGAAATTCGTGGATGA 58.383 47.619 0.00 0.00 34.56 2.92
4609 5388 5.175859 TGCAATTGGTTCAGTAGTAGTAGC 58.824 41.667 7.72 0.00 0.00 3.58
4659 5438 2.598394 CTGCTTGGGTGGTGGTGG 60.598 66.667 0.00 0.00 0.00 4.61
4762 5546 0.036858 AGAGAAACGCCAAGAGGAGC 60.037 55.000 0.00 0.00 38.42 4.70
4796 5583 2.093658 CGTTAGGGTGGCATGACTTAGT 60.094 50.000 0.00 0.00 0.00 2.24
4947 5734 4.077184 CGGGAAGCCGTAGCACCA 62.077 66.667 0.00 0.00 43.56 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.