Multiple sequence alignment - TraesCS5D01G525000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G525000 chr5D 100.000 8191 0 0 1 8191 543694944 543686754 0.000000e+00 15127.0
1 TraesCS5D01G525000 chr5D 96.501 743 14 5 7461 8191 543682448 543681706 0.000000e+00 1218.0
2 TraesCS5D01G525000 chr5D 96.366 743 15 4 7461 8191 415279329 415278587 0.000000e+00 1212.0
3 TraesCS5D01G525000 chr4A 95.203 2189 63 13 5292 7451 625463817 625465992 0.000000e+00 3422.0
4 TraesCS5D01G525000 chr4A 92.247 1638 105 11 3675 5301 625405837 625407463 0.000000e+00 2302.0
5 TraesCS5D01G525000 chr4A 91.253 926 62 14 2689 3598 625404865 625405787 0.000000e+00 1243.0
6 TraesCS5D01G525000 chr4A 95.424 743 22 5 7461 8191 606785258 606786000 0.000000e+00 1173.0
7 TraesCS5D01G525000 chr4A 90.355 591 28 9 1436 2002 625403355 625403940 0.000000e+00 749.0
8 TraesCS5D01G525000 chr4A 90.888 439 29 8 4 440 625402849 625403278 5.510000e-161 579.0
9 TraesCS5D01G525000 chr4A 86.686 338 27 9 2362 2686 625404448 625404780 7.820000e-95 359.0
10 TraesCS5D01G525000 chr4A 82.322 379 27 14 1999 2361 625404027 625404381 8.040000e-75 292.0
11 TraesCS5D01G525000 chr4A 90.625 96 6 2 3597 3690 625404925 625405019 3.100000e-24 124.0
12 TraesCS5D01G525000 chr6D 99.405 1008 3 2 429 1436 21299581 21298577 0.000000e+00 1825.0
13 TraesCS5D01G525000 chr6D 96.097 743 17 4 7461 8191 86645999 86645257 0.000000e+00 1201.0
14 TraesCS5D01G525000 chr6D 99.543 438 2 0 1000 1437 21303794 21303357 0.000000e+00 798.0
15 TraesCS5D01G525000 chr6D 93.439 442 21 6 1002 1436 3146414 3145974 0.000000e+00 649.0
16 TraesCS5D01G525000 chr6A 95.857 1038 10 3 429 1436 565337337 565338371 0.000000e+00 1648.0
17 TraesCS5D01G525000 chr6A 95.374 735 21 6 7466 8191 10933480 10932750 0.000000e+00 1157.0
18 TraesCS5D01G525000 chr6A 99.310 435 2 1 1002 1436 565333127 565333560 0.000000e+00 785.0
19 TraesCS5D01G525000 chr6A 72.084 523 114 27 4444 4947 609609629 609609120 2.400000e-25 128.0
20 TraesCS5D01G525000 chr2A 96.463 735 17 4 7466 8191 769012436 769011702 0.000000e+00 1205.0
21 TraesCS5D01G525000 chr2A 96.190 735 19 2 7466 8191 769007276 769006542 0.000000e+00 1194.0
22 TraesCS5D01G525000 chr3A 96.221 741 17 5 7461 8190 549340489 549341229 0.000000e+00 1203.0
23 TraesCS5D01G525000 chr3A 93.188 734 41 2 7466 8191 732852213 732852945 0.000000e+00 1070.0
24 TraesCS5D01G525000 chr3A 80.714 140 25 2 5873 6011 718556574 718556436 3.130000e-19 108.0
25 TraesCS5D01G525000 chr7A 95.924 736 19 5 7466 8191 609376283 609375549 0.000000e+00 1182.0
26 TraesCS5D01G525000 chr7A 96.867 415 5 2 1024 1436 3595653 3596061 0.000000e+00 688.0
27 TraesCS5D01G525000 chr1A 95.102 735 24 4 7466 8191 585357622 585356891 0.000000e+00 1147.0
28 TraesCS5D01G525000 chr1A 98.789 413 5 0 1024 1436 550790230 550790642 0.000000e+00 736.0
29 TraesCS5D01G525000 chr5A 94.550 734 32 1 7466 8191 601211398 601210665 0.000000e+00 1127.0
30 TraesCS5D01G525000 chr5A 84.389 442 57 9 1002 1436 196309482 196309918 2.730000e-114 424.0
31 TraesCS5D01G525000 chr3D 93.145 744 37 6 7461 8191 56440433 56439691 0.000000e+00 1079.0
32 TraesCS5D01G525000 chr1D 89.840 748 48 12 7461 8191 49968415 49969151 0.000000e+00 935.0
33 TraesCS5D01G525000 chr7D 99.540 435 2 0 1002 1436 66824523 66824957 0.000000e+00 793.0
34 TraesCS5D01G525000 chr5B 93.636 440 27 1 1 440 685643148 685642710 0.000000e+00 656.0
35 TraesCS5D01G525000 chr5B 82.955 176 30 0 2947 3122 685641807 685641632 8.510000e-35 159.0
36 TraesCS5D01G525000 chr5B 80.000 85 17 0 5640 5724 697294556 697294640 6.860000e-06 63.9
37 TraesCS5D01G525000 chr2B 76.163 172 32 5 5564 5726 17594554 17594383 1.890000e-11 82.4
38 TraesCS5D01G525000 chr2B 94.595 37 2 0 5695 5731 787800797 787800761 3.190000e-04 58.4
39 TraesCS5D01G525000 chr7B 75.294 170 33 5 5564 5724 709559812 709559981 1.140000e-08 73.1
40 TraesCS5D01G525000 chr7B 75.497 151 28 4 5583 5724 709524988 709525138 1.910000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G525000 chr5D 543686754 543694944 8190 True 15127.000000 15127 100.000000 1 8191 1 chr5D.!!$R3 8190
1 TraesCS5D01G525000 chr5D 543681706 543682448 742 True 1218.000000 1218 96.501000 7461 8191 1 chr5D.!!$R2 730
2 TraesCS5D01G525000 chr5D 415278587 415279329 742 True 1212.000000 1212 96.366000 7461 8191 1 chr5D.!!$R1 730
3 TraesCS5D01G525000 chr4A 625463817 625465992 2175 False 3422.000000 3422 95.203000 5292 7451 1 chr4A.!!$F2 2159
4 TraesCS5D01G525000 chr4A 606785258 606786000 742 False 1173.000000 1173 95.424000 7461 8191 1 chr4A.!!$F1 730
5 TraesCS5D01G525000 chr4A 625402849 625407463 4614 False 806.857143 2302 89.196571 4 5301 7 chr4A.!!$F3 5297
6 TraesCS5D01G525000 chr6D 21298577 21303794 5217 True 1311.500000 1825 99.474000 429 1437 2 chr6D.!!$R3 1008
7 TraesCS5D01G525000 chr6D 86645257 86645999 742 True 1201.000000 1201 96.097000 7461 8191 1 chr6D.!!$R2 730
8 TraesCS5D01G525000 chr6A 565333127 565338371 5244 False 1216.500000 1648 97.583500 429 1436 2 chr6A.!!$F1 1007
9 TraesCS5D01G525000 chr6A 10932750 10933480 730 True 1157.000000 1157 95.374000 7466 8191 1 chr6A.!!$R1 725
10 TraesCS5D01G525000 chr2A 769011702 769012436 734 True 1205.000000 1205 96.463000 7466 8191 1 chr2A.!!$R2 725
11 TraesCS5D01G525000 chr2A 769006542 769007276 734 True 1194.000000 1194 96.190000 7466 8191 1 chr2A.!!$R1 725
12 TraesCS5D01G525000 chr3A 549340489 549341229 740 False 1203.000000 1203 96.221000 7461 8190 1 chr3A.!!$F1 729
13 TraesCS5D01G525000 chr3A 732852213 732852945 732 False 1070.000000 1070 93.188000 7466 8191 1 chr3A.!!$F2 725
14 TraesCS5D01G525000 chr7A 609375549 609376283 734 True 1182.000000 1182 95.924000 7466 8191 1 chr7A.!!$R1 725
15 TraesCS5D01G525000 chr1A 585356891 585357622 731 True 1147.000000 1147 95.102000 7466 8191 1 chr1A.!!$R1 725
16 TraesCS5D01G525000 chr5A 601210665 601211398 733 True 1127.000000 1127 94.550000 7466 8191 1 chr5A.!!$R1 725
17 TraesCS5D01G525000 chr3D 56439691 56440433 742 True 1079.000000 1079 93.145000 7461 8191 1 chr3D.!!$R1 730
18 TraesCS5D01G525000 chr1D 49968415 49969151 736 False 935.000000 935 89.840000 7461 8191 1 chr1D.!!$F1 730
19 TraesCS5D01G525000 chr5B 685641632 685643148 1516 True 407.500000 656 88.295500 1 3122 2 chr5B.!!$R1 3121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 333 0.687920 TACCTTCACGTGGAATGCCA 59.312 50.0 17.00 0.00 43.47 4.92 F
2142 6096 0.108585 ACAACTCCTTGTCGCCATGT 59.891 50.0 0.00 0.00 35.57 3.21 F
2260 6214 0.302890 GTAGCGATGCAGTGTCATGC 59.697 55.0 5.01 8.47 46.68 4.06 F
2420 6441 0.401395 TGAACCCTCCTCCCTTGTGT 60.401 55.0 0.00 0.00 0.00 3.72 F
3892 8040 0.528033 CCTCTGAGAGCAGCATCACG 60.528 60.0 6.17 0.00 42.01 4.35 F
5152 9303 1.006832 CTTACACATAGCGGCACCAC 58.993 55.0 1.45 0.00 0.00 4.16 F
6536 10710 0.107643 GTATCTCCTCCAGCAAGGCC 59.892 60.0 0.00 0.00 36.29 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 6196 0.108233 TGCATGACACTGCATCGCTA 60.108 50.000 0.00 0.0 46.76 4.26 R
3874 8022 0.528033 CCGTGATGCTGCTCTCAGAG 60.528 60.000 0.00 0.0 42.95 3.35 R
3892 8040 2.206576 AACCTGAAGAAGACCATGCC 57.793 50.000 0.00 0.0 0.00 4.40 R
4062 8210 2.775384 AGGTACACCACACCAGAAAAGA 59.225 45.455 0.38 0.0 38.62 2.52 R
5281 9432 0.036010 CATCCGGCAGAAACCACTCT 60.036 55.000 0.00 0.0 0.00 3.24 R
6538 10712 0.179062 CTGGAGGCGGAGAGAAATGG 60.179 60.000 0.00 0.0 0.00 3.16 R
7345 11525 1.268794 CGAAAACACAATTGGCCACGA 60.269 47.619 3.88 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 208 7.203910 ACAACTCAGGATAGCTCTTATTTACG 58.796 38.462 0.00 0.00 0.00 3.18
312 314 2.093341 GGCATTTGTGAGGGATTGCATT 60.093 45.455 0.00 0.00 0.00 3.56
331 333 0.687920 TACCTTCACGTGGAATGCCA 59.312 50.000 17.00 0.00 43.47 4.92
339 341 2.279743 TGGAATGCCAGGATGCCC 59.720 61.111 0.00 0.00 39.92 5.36
341 343 2.522680 GAATGCCAGGATGCCCCC 60.523 66.667 0.00 0.00 34.66 5.40
359 361 2.309136 CCCTTGTCCATGAGGGTTTT 57.691 50.000 8.74 0.00 46.27 2.43
360 362 3.449746 CCCTTGTCCATGAGGGTTTTA 57.550 47.619 8.74 0.00 46.27 1.52
361 363 3.773560 CCCTTGTCCATGAGGGTTTTAA 58.226 45.455 8.74 0.00 46.27 1.52
362 364 4.156477 CCCTTGTCCATGAGGGTTTTAAA 58.844 43.478 8.74 0.00 46.27 1.52
380 382 8.541133 GTTTTAAACCTGCCAATATTTTGCTA 57.459 30.769 7.92 0.00 0.00 3.49
381 383 8.655970 GTTTTAAACCTGCCAATATTTTGCTAG 58.344 33.333 7.92 0.00 0.00 3.42
383 385 6.796785 AAACCTGCCAATATTTTGCTAGAT 57.203 33.333 0.00 0.00 0.00 1.98
385 387 7.896383 AACCTGCCAATATTTTGCTAGATAA 57.104 32.000 0.00 0.00 0.00 1.75
386 388 8.482852 AACCTGCCAATATTTTGCTAGATAAT 57.517 30.769 0.00 0.00 0.00 1.28
387 389 7.889469 ACCTGCCAATATTTTGCTAGATAATG 58.111 34.615 0.00 0.00 0.00 1.90
390 392 6.690530 GCCAATATTTTGCTAGATAATGGCA 58.309 36.000 23.63 0.00 46.68 4.92
391 393 7.325694 GCCAATATTTTGCTAGATAATGGCAT 58.674 34.615 23.63 0.00 46.68 4.40
392 394 7.277098 GCCAATATTTTGCTAGATAATGGCATG 59.723 37.037 23.63 0.00 46.68 4.06
393 395 7.762615 CCAATATTTTGCTAGATAATGGCATGG 59.237 37.037 0.00 0.00 45.78 3.66
394 396 8.308931 CAATATTTTGCTAGATAATGGCATGGT 58.691 33.333 0.00 0.00 45.78 3.55
398 400 2.936993 GCTAGATAATGGCATGGTCCCG 60.937 54.545 0.00 0.00 35.01 5.14
405 407 1.227674 GGCATGGTCCCGAAGCTAG 60.228 63.158 0.00 0.00 0.00 3.42
406 408 1.889573 GCATGGTCCCGAAGCTAGC 60.890 63.158 6.62 6.62 0.00 3.42
407 409 1.592669 CATGGTCCCGAAGCTAGCG 60.593 63.158 9.55 2.19 0.00 4.26
426 428 3.141002 CGGATTTCTGCACTTCAATGG 57.859 47.619 0.00 0.00 0.00 3.16
427 429 2.733227 CGGATTTCTGCACTTCAATGGC 60.733 50.000 0.00 0.00 0.00 4.40
428 430 2.494870 GGATTTCTGCACTTCAATGGCT 59.505 45.455 0.00 0.00 0.00 4.75
430 432 1.985473 TTCTGCACTTCAATGGCTGT 58.015 45.000 0.00 0.00 0.00 4.40
431 433 1.527034 TCTGCACTTCAATGGCTGTC 58.473 50.000 0.00 0.00 0.00 3.51
432 434 1.202794 TCTGCACTTCAATGGCTGTCA 60.203 47.619 0.00 0.00 0.00 3.58
433 435 0.953727 TGCACTTCAATGGCTGTCAC 59.046 50.000 0.00 0.00 0.00 3.67
434 436 0.953727 GCACTTCAATGGCTGTCACA 59.046 50.000 0.00 0.00 0.00 3.58
435 437 1.542915 GCACTTCAATGGCTGTCACAT 59.457 47.619 0.00 0.00 0.00 3.21
1468 5283 3.785887 TGGAAGCACCTTATCCCTATGTT 59.214 43.478 1.91 0.00 39.86 2.71
1602 5425 1.141858 CTCCCCTTATGGTGCTTCTCC 59.858 57.143 0.00 0.00 0.00 3.71
1609 5432 4.445305 CCTTATGGTGCTTCTCCATGATCA 60.445 45.833 0.00 0.00 44.26 2.92
1715 5548 1.078528 AGAGGTCATGGACACCGGA 59.921 57.895 9.46 0.00 39.13 5.14
1718 5551 0.991920 AGGTCATGGACACCGGAAAT 59.008 50.000 9.46 0.00 39.13 2.17
1772 5605 5.164954 GGTGTTCTGATAATAGAGATCGCC 58.835 45.833 0.00 0.00 33.57 5.54
1808 5641 1.609072 CCTAGCGACGAATCATCAGGA 59.391 52.381 0.00 0.00 0.00 3.86
1833 5666 8.282455 ACGGTCATATATCGAGAATGTAAGAT 57.718 34.615 0.00 0.00 0.00 2.40
1897 5744 7.382218 ACTGAAGCCGTTTGATTTTGAAATTAG 59.618 33.333 0.00 0.00 0.00 1.73
1903 5750 8.338986 GCCGTTTGATTTTGAAATTAGGAAAAA 58.661 29.630 0.00 0.00 0.00 1.94
1904 5751 9.862585 CCGTTTGATTTTGAAATTAGGAAAAAG 57.137 29.630 0.00 0.00 0.00 2.27
1984 5833 4.020485 ACACACCCTTCACTATGGTTCTAC 60.020 45.833 0.00 0.00 0.00 2.59
2012 5951 3.764434 TGTCAGTGTGAAGACCCTATCTC 59.236 47.826 0.00 0.00 36.27 2.75
2044 5983 0.179018 GTGCCCACCTGTCAGACTTT 60.179 55.000 0.00 0.00 0.00 2.66
2046 5985 1.771854 TGCCCACCTGTCAGACTTTTA 59.228 47.619 0.00 0.00 0.00 1.52
2053 5992 5.408604 CCACCTGTCAGACTTTTACATACAC 59.591 44.000 0.00 0.00 0.00 2.90
2055 5994 5.989777 ACCTGTCAGACTTTTACATACACAC 59.010 40.000 0.00 0.00 0.00 3.82
2059 5998 6.426633 TGTCAGACTTTTACATACACACCATG 59.573 38.462 1.31 0.00 0.00 3.66
2069 6008 8.794335 TTACATACACACCATGCTTTTGTATA 57.206 30.769 6.99 0.00 32.77 1.47
2096 6035 1.317613 ACATTGCTTTCGCTTGTGGA 58.682 45.000 0.00 0.00 33.82 4.02
2100 6039 0.597568 TGCTTTCGCTTGTGGATTGG 59.402 50.000 0.00 0.00 36.97 3.16
2142 6096 0.108585 ACAACTCCTTGTCGCCATGT 59.891 50.000 0.00 0.00 35.57 3.21
2144 6098 2.224426 ACAACTCCTTGTCGCCATGTTA 60.224 45.455 0.00 0.00 35.57 2.41
2156 6110 2.780065 CCATGTTATTGGCGGACATG 57.220 50.000 12.47 12.47 46.29 3.21
2169 6123 1.373570 GGACATGTTCTGTAGGCTGC 58.626 55.000 0.00 0.00 38.54 5.25
2198 6152 1.749634 CTTACAGGTAGCGCCAGTAGT 59.250 52.381 2.29 0.00 39.83 2.73
2231 6185 2.062070 GCGGATCTGCCTTCCCTAT 58.938 57.895 16.13 0.00 0.00 2.57
2235 6189 2.757868 CGGATCTGCCTTCCCTATAGAG 59.242 54.545 0.00 0.00 0.00 2.43
2242 6196 6.143915 TCTGCCTTCCCTATAGAGTTTATGT 58.856 40.000 0.00 0.00 0.00 2.29
2243 6197 7.302948 TCTGCCTTCCCTATAGAGTTTATGTA 58.697 38.462 0.00 0.00 0.00 2.29
2244 6198 7.451877 TCTGCCTTCCCTATAGAGTTTATGTAG 59.548 40.741 0.00 0.00 0.00 2.74
2245 6199 6.014499 TGCCTTCCCTATAGAGTTTATGTAGC 60.014 42.308 0.00 0.00 0.00 3.58
2246 6200 6.622549 CCTTCCCTATAGAGTTTATGTAGCG 58.377 44.000 0.00 0.00 0.00 4.26
2247 6201 6.433404 CCTTCCCTATAGAGTTTATGTAGCGA 59.567 42.308 0.00 0.00 0.00 4.93
2248 6202 7.122948 CCTTCCCTATAGAGTTTATGTAGCGAT 59.877 40.741 0.00 0.00 0.00 4.58
2249 6203 7.392494 TCCCTATAGAGTTTATGTAGCGATG 57.608 40.000 0.00 0.00 0.00 3.84
2250 6204 6.037098 CCCTATAGAGTTTATGTAGCGATGC 58.963 44.000 0.00 0.00 0.00 3.91
2251 6205 6.350194 CCCTATAGAGTTTATGTAGCGATGCA 60.350 42.308 0.00 0.00 0.00 3.96
2252 6206 6.749578 CCTATAGAGTTTATGTAGCGATGCAG 59.250 42.308 0.00 0.00 0.00 4.41
2253 6207 4.392921 AGAGTTTATGTAGCGATGCAGT 57.607 40.909 0.00 0.00 0.00 4.40
2254 6208 4.115516 AGAGTTTATGTAGCGATGCAGTG 58.884 43.478 0.00 0.00 0.00 3.66
2255 6209 3.861840 AGTTTATGTAGCGATGCAGTGT 58.138 40.909 0.00 0.00 0.00 3.55
2256 6210 3.865745 AGTTTATGTAGCGATGCAGTGTC 59.134 43.478 0.00 0.00 0.00 3.67
2257 6211 3.518634 TTATGTAGCGATGCAGTGTCA 57.481 42.857 0.00 0.00 0.00 3.58
2258 6212 2.609427 ATGTAGCGATGCAGTGTCAT 57.391 45.000 0.00 0.44 0.00 3.06
2259 6213 1.643880 TGTAGCGATGCAGTGTCATG 58.356 50.000 5.01 0.00 0.00 3.07
2260 6214 0.302890 GTAGCGATGCAGTGTCATGC 59.697 55.000 5.01 8.47 46.68 4.06
2279 6233 5.648960 TCATGCATTGTGCTGATCTTCTAAA 59.351 36.000 0.00 0.00 45.31 1.85
2285 6239 7.627939 GCATTGTGCTGATCTTCTAAATTGTCT 60.628 37.037 0.00 0.00 40.96 3.41
2289 6243 8.077991 TGTGCTGATCTTCTAAATTGTCTTTTG 58.922 33.333 0.00 0.00 0.00 2.44
2420 6441 0.401395 TGAACCCTCCTCCCTTGTGT 60.401 55.000 0.00 0.00 0.00 3.72
2427 6448 5.738401 ACCCTCCTCCCTTGTGTTATATAT 58.262 41.667 0.00 0.00 0.00 0.86
2430 6451 7.967747 ACCCTCCTCCCTTGTGTTATATATATT 59.032 37.037 0.00 0.00 0.00 1.28
2487 6514 3.921677 ACCCAGTTGTAAGATGTACGTG 58.078 45.455 0.00 0.00 0.00 4.49
2639 6681 9.562408 TGAACTGTCACATAACTATGGTAAAAA 57.438 29.630 1.98 0.00 38.00 1.94
2717 6841 4.782019 TTTTGTGACATGGAACCTATGC 57.218 40.909 0.00 0.00 0.00 3.14
2736 6860 2.342910 CATTGTCTGCTTCAGCCAAC 57.657 50.000 0.00 0.00 41.18 3.77
2737 6861 1.610038 CATTGTCTGCTTCAGCCAACA 59.390 47.619 0.00 0.00 41.18 3.33
2762 6886 1.687612 CCTGACATGTGGGGCTTCT 59.312 57.895 1.15 0.00 0.00 2.85
2779 6903 4.104897 GGCTTCTCTATTAGGTTGGGGAAT 59.895 45.833 0.00 0.00 0.00 3.01
2780 6904 5.399152 GGCTTCTCTATTAGGTTGGGGAATT 60.399 44.000 0.00 0.00 0.00 2.17
2829 6955 8.020244 GGAAGAAAGCAGAAATGAGTAAAAGAG 58.980 37.037 0.00 0.00 0.00 2.85
2836 6962 8.907885 AGCAGAAATGAGTAAAAGAGAGTTTTT 58.092 29.630 0.00 0.00 34.78 1.94
2935 7061 3.373658 CCCCTAATCCAATTTACCAGGCA 60.374 47.826 0.00 0.00 0.00 4.75
3076 7202 3.134081 CCGAAAGAAGGCCTACTATTGGA 59.866 47.826 5.16 0.00 0.00 3.53
3101 7227 8.579850 ACAAATAATGCATTTCCTTGAGACTA 57.420 30.769 18.75 0.00 34.49 2.59
3135 7263 4.081642 TCCAGAGGTATGACTGCAAAGTAC 60.082 45.833 0.00 0.00 33.40 2.73
3154 7282 5.128205 AGTACACACAAACTCCCCTAAAAC 58.872 41.667 0.00 0.00 0.00 2.43
3279 7409 6.157994 AGGGAAAGACCATACTTAGTGCAATA 59.842 38.462 0.00 0.00 41.20 1.90
3280 7410 6.998673 GGGAAAGACCATACTTAGTGCAATAT 59.001 38.462 0.00 0.00 41.20 1.28
3312 7442 8.618677 ACTTTTTACTCCTGTTTAGTTAGTTGC 58.381 33.333 0.00 0.00 0.00 4.17
3322 7452 1.024579 AGTTAGTTGCCCGATTGCCG 61.025 55.000 0.00 0.00 38.18 5.69
3328 7458 0.962855 TTGCCCGATTGCCGATTGAA 60.963 50.000 0.00 0.00 41.76 2.69
3335 7465 4.055360 CCGATTGCCGATTGAATGTAGTA 58.945 43.478 0.00 0.00 41.76 1.82
3371 7501 1.086696 TTATCGTGCTTGCTTGAGCC 58.913 50.000 0.00 0.00 42.01 4.70
3387 7517 5.047448 GCTTGAGCCTATAGTGATCATCTGA 60.047 44.000 0.00 0.00 34.31 3.27
3391 7521 5.639139 AGCCTATAGTGATCATCTGACAGA 58.361 41.667 7.80 7.80 0.00 3.41
3393 7523 6.209192 AGCCTATAGTGATCATCTGACAGAAG 59.791 42.308 9.70 5.16 0.00 2.85
3395 7525 7.255766 GCCTATAGTGATCATCTGACAGAAGAA 60.256 40.741 13.93 1.31 0.00 2.52
3398 7528 8.890124 ATAGTGATCATCTGACAGAAGAAATG 57.110 34.615 13.93 5.66 0.00 2.32
3442 7576 8.709386 ATGTAAAACATACTCTGTGATGAGAC 57.291 34.615 0.00 0.00 36.99 3.36
3444 7578 8.314021 TGTAAAACATACTCTGTGATGAGACAT 58.686 33.333 0.00 0.00 38.39 3.06
3447 7585 9.896645 AAAACATACTCTGTGATGAGACATATT 57.103 29.630 0.00 0.00 38.39 1.28
3453 7591 6.260271 ACTCTGTGATGAGACATATTGCAATG 59.740 38.462 22.27 10.38 37.50 2.82
3457 7595 5.048921 GTGATGAGACATATTGCAATGGGAG 60.049 44.000 22.27 10.79 0.00 4.30
3489 7628 3.067180 ACTTATGCCTTTCGATGCCATTG 59.933 43.478 0.00 0.00 0.00 2.82
3495 7634 3.270027 CCTTTCGATGCCATTGTAGTCA 58.730 45.455 0.00 0.00 0.00 3.41
3517 7656 7.560991 AGTCATATTGGACAGGAATTGCAATAA 59.439 33.333 13.39 0.60 40.29 1.40
3537 7677 7.412853 CAATAAGGATGAAAGCACTACATGTC 58.587 38.462 0.00 0.00 0.00 3.06
3542 7682 5.007430 GGATGAAAGCACTACATGTCTCATG 59.993 44.000 0.00 7.99 0.00 3.07
3545 7685 1.134280 AGCACTACATGTCTCATGCCC 60.134 52.381 0.00 0.00 33.50 5.36
3598 7738 2.046292 TGTCTGGACATTGAGACCACA 58.954 47.619 0.00 0.00 37.14 4.17
3600 7740 3.005554 GTCTGGACATTGAGACCACATG 58.994 50.000 0.00 0.00 37.14 3.21
3601 7741 2.639347 TCTGGACATTGAGACCACATGT 59.361 45.455 0.00 0.00 37.14 3.21
3602 7742 2.745821 CTGGACATTGAGACCACATGTG 59.254 50.000 19.31 19.31 37.14 3.21
3622 7762 2.658807 GGGCTTCCCTATTAGGTTGG 57.341 55.000 8.91 0.00 41.34 3.77
3623 7763 1.145119 GGGCTTCCCTATTAGGTTGGG 59.855 57.143 8.91 0.00 43.51 4.12
3624 7764 1.145119 GGCTTCCCTATTAGGTTGGGG 59.855 57.143 8.91 0.00 42.52 4.96
3625 7765 2.132686 GCTTCCCTATTAGGTTGGGGA 58.867 52.381 8.91 0.00 45.22 4.81
3630 7770 5.824542 TCCCTATTAGGTTGGGGAAATTT 57.175 39.130 8.91 0.00 44.10 1.82
3631 7771 5.524535 TCCCTATTAGGTTGGGGAAATTTG 58.475 41.667 8.91 0.00 44.10 2.32
3632 7772 5.016890 TCCCTATTAGGTTGGGGAAATTTGT 59.983 40.000 8.91 0.00 44.10 2.83
3633 7773 5.724370 CCCTATTAGGTTGGGGAAATTTGTT 59.276 40.000 8.91 0.00 41.25 2.83
3634 7774 6.898521 CCCTATTAGGTTGGGGAAATTTGTTA 59.101 38.462 8.91 0.00 41.25 2.41
3637 7777 9.869757 CTATTAGGTTGGGGAAATTTGTTAAAG 57.130 33.333 0.00 0.00 0.00 1.85
3638 7778 7.678207 TTAGGTTGGGGAAATTTGTTAAAGT 57.322 32.000 0.00 0.00 0.00 2.66
3639 7779 5.924356 AGGTTGGGGAAATTTGTTAAAGTG 58.076 37.500 0.00 0.00 0.00 3.16
3641 7781 4.965200 TGGGGAAATTTGTTAAAGTGGG 57.035 40.909 0.00 0.00 0.00 4.61
3642 7782 4.299485 TGGGGAAATTTGTTAAAGTGGGT 58.701 39.130 0.00 0.00 0.00 4.51
3643 7783 5.464984 TGGGGAAATTTGTTAAAGTGGGTA 58.535 37.500 0.00 0.00 0.00 3.69
3644 7784 5.903589 TGGGGAAATTTGTTAAAGTGGGTAA 59.096 36.000 0.00 0.00 0.00 2.85
3646 7786 6.707161 GGGGAAATTTGTTAAAGTGGGTAAAC 59.293 38.462 0.00 0.00 0.00 2.01
3647 7787 6.707161 GGGAAATTTGTTAAAGTGGGTAAACC 59.293 38.462 0.00 0.00 40.81 3.27
3660 7800 4.678256 TGGGTAAACCATGGAATAAAGCA 58.322 39.130 21.47 0.00 46.80 3.91
3661 7801 4.709397 TGGGTAAACCATGGAATAAAGCAG 59.291 41.667 21.47 0.00 46.80 4.24
3662 7802 4.953579 GGGTAAACCATGGAATAAAGCAGA 59.046 41.667 21.47 0.00 39.85 4.26
3663 7803 5.420739 GGGTAAACCATGGAATAAAGCAGAA 59.579 40.000 21.47 0.00 39.85 3.02
3664 7804 6.071051 GGGTAAACCATGGAATAAAGCAGAAA 60.071 38.462 21.47 0.00 39.85 2.52
3665 7805 7.364673 GGGTAAACCATGGAATAAAGCAGAAAT 60.365 37.037 21.47 0.00 39.85 2.17
3666 7806 7.492344 GGTAAACCATGGAATAAAGCAGAAATG 59.508 37.037 21.47 0.00 35.64 2.32
3667 7807 6.855763 AACCATGGAATAAAGCAGAAATGA 57.144 33.333 21.47 0.00 0.00 2.57
3668 7808 6.461110 ACCATGGAATAAAGCAGAAATGAG 57.539 37.500 21.47 0.00 0.00 2.90
3669 7809 5.954150 ACCATGGAATAAAGCAGAAATGAGT 59.046 36.000 21.47 0.00 0.00 3.41
3670 7810 7.118723 ACCATGGAATAAAGCAGAAATGAGTA 58.881 34.615 21.47 0.00 0.00 2.59
3671 7811 7.615365 ACCATGGAATAAAGCAGAAATGAGTAA 59.385 33.333 21.47 0.00 0.00 2.24
3672 7812 8.469200 CCATGGAATAAAGCAGAAATGAGTAAA 58.531 33.333 5.56 0.00 0.00 2.01
3673 7813 9.859427 CATGGAATAAAGCAGAAATGAGTAAAA 57.141 29.630 0.00 0.00 0.00 1.52
3683 7823 7.014615 AGCAGAAATGAGTAAAAGACCATTGTT 59.985 33.333 0.00 0.00 32.52 2.83
3690 7830 6.016610 TGAGTAAAAGACCATTGTTGCCTTAC 60.017 38.462 0.00 0.00 0.00 2.34
3691 7831 5.830991 AGTAAAAGACCATTGTTGCCTTACA 59.169 36.000 0.00 0.00 0.00 2.41
3704 7844 3.934068 TGCCTTACAGCAGGTTTAGTAC 58.066 45.455 0.00 0.00 38.00 2.73
3705 7845 3.325425 TGCCTTACAGCAGGTTTAGTACA 59.675 43.478 0.00 0.00 38.00 2.90
3718 7866 7.865707 CAGGTTTAGTACATGCCAGATTATTC 58.134 38.462 0.00 0.00 31.04 1.75
3763 7911 1.978580 AGGGTTTCTAGTCCACACCTG 59.021 52.381 0.00 0.00 0.00 4.00
3764 7912 1.697982 GGGTTTCTAGTCCACACCTGT 59.302 52.381 0.00 0.00 0.00 4.00
3774 7922 4.787551 AGTCCACACCTGTTTTGTTATCA 58.212 39.130 0.00 0.00 0.00 2.15
3781 7929 7.254387 CCACACCTGTTTTGTTATCACAATTTG 60.254 37.037 0.00 0.00 42.66 2.32
3782 7930 7.277539 CACACCTGTTTTGTTATCACAATTTGT 59.722 33.333 0.00 0.00 42.66 2.83
3797 7945 7.142680 TCACAATTTGTTATCGTTTTTCCTCC 58.857 34.615 0.00 0.00 0.00 4.30
3800 7948 8.201464 ACAATTTGTTATCGTTTTTCCTCCTTT 58.799 29.630 0.00 0.00 0.00 3.11
3874 8022 7.675062 ACTACTATGGAGAATTCATCATGTCC 58.325 38.462 18.06 11.38 34.80 4.02
3892 8040 0.528033 CCTCTGAGAGCAGCATCACG 60.528 60.000 6.17 0.00 42.01 4.35
3918 8066 4.957296 TGGTCTTCTTCAGGTTAGTGTTC 58.043 43.478 0.00 0.00 0.00 3.18
3923 8071 5.301045 TCTTCTTCAGGTTAGTGTTCTTCGA 59.699 40.000 0.00 0.00 0.00 3.71
3927 8075 6.479001 TCTTCAGGTTAGTGTTCTTCGAAAAG 59.521 38.462 0.00 0.00 0.00 2.27
3928 8076 5.667466 TCAGGTTAGTGTTCTTCGAAAAGT 58.333 37.500 0.00 0.00 33.95 2.66
3929 8077 6.110707 TCAGGTTAGTGTTCTTCGAAAAGTT 58.889 36.000 0.00 0.00 33.95 2.66
3930 8078 6.596497 TCAGGTTAGTGTTCTTCGAAAAGTTT 59.404 34.615 0.00 0.00 33.95 2.66
3993 8141 6.395629 TCACAGGAAGGAAAATACTAGTTCG 58.604 40.000 0.00 0.00 0.00 3.95
4005 8153 6.887626 AATACTAGTTCGGCAAAAGGAAAA 57.112 33.333 0.00 0.00 0.00 2.29
4006 8154 7.462571 AATACTAGTTCGGCAAAAGGAAAAT 57.537 32.000 0.00 0.00 0.00 1.82
4062 8210 8.472413 CATTTACTTCTCCATGATCCACAAAAT 58.528 33.333 0.00 0.00 0.00 1.82
4075 8223 5.261209 TCCACAAAATCTTTTCTGGTGTG 57.739 39.130 8.83 4.31 37.45 3.82
4108 8256 3.523606 ACAACAATGTGCAAAAGCTCA 57.476 38.095 0.00 0.00 38.69 4.26
4111 8259 2.813061 ACAATGTGCAAAAGCTCACAC 58.187 42.857 8.02 5.01 44.74 3.82
4115 8263 1.063912 TGTGCAAAAGCTCACACGAAG 59.936 47.619 2.03 0.00 38.18 3.79
4120 8268 3.739300 GCAAAAGCTCACACGAAGTAGTA 59.261 43.478 0.00 0.00 41.61 1.82
4129 8277 6.622245 GCTCACACGAAGTAGTACAGTTCATA 60.622 42.308 2.52 0.00 41.61 2.15
4219 8368 6.307318 GTCATTGAATTTAGCTCTGCAAACAG 59.693 38.462 0.00 0.00 45.95 3.16
4240 8389 6.800890 ACAGGAATGGTAGAAAAGGGTAAAT 58.199 36.000 0.00 0.00 0.00 1.40
4318 8467 8.454894 GTGTTGTAACATTTTCATTTTGGGTTT 58.545 29.630 0.26 0.00 41.59 3.27
4359 8508 8.722480 TCTTGTAGTGGAGAAATAACATGATG 57.278 34.615 0.00 0.00 0.00 3.07
4378 8527 8.316946 ACATGATGTAGAAGTTCATGAAGAGAA 58.683 33.333 8.80 0.00 46.16 2.87
4413 8562 7.347222 ACCATGTGTACTTATTATTCAGGAGGA 59.653 37.037 0.00 0.00 0.00 3.71
4443 8592 2.104144 GCAGAAATGCGTAATCAAGCG 58.896 47.619 0.00 0.00 35.87 4.68
4553 8702 8.524870 ACAAGAAATTTTTCTCGAATGATTGG 57.475 30.769 6.05 0.00 46.22 3.16
4594 8745 6.653740 AGCTGTTTACCTGGTATACTTTGTTC 59.346 38.462 22.39 9.46 0.00 3.18
4600 8751 6.388619 ACCTGGTATACTTTGTTCCTGATT 57.611 37.500 0.00 0.00 0.00 2.57
4605 8756 9.265901 CTGGTATACTTTGTTCCTGATTATCTG 57.734 37.037 2.25 0.00 0.00 2.90
4614 8765 8.812513 TTGTTCCTGATTATCTGTCAAATCAT 57.187 30.769 0.07 0.00 40.37 2.45
4679 8830 4.994907 ATGCTAACATGTACGGTGAGTA 57.005 40.909 0.00 0.86 34.35 2.59
4682 8833 5.726397 TGCTAACATGTACGGTGAGTAAAT 58.274 37.500 0.00 0.00 37.02 1.40
4727 8878 2.492012 AGTTGCTGTGAAGAAGCTCTG 58.508 47.619 0.00 0.00 41.42 3.35
4779 8930 5.313520 TCGTGGACGAGATTGTATGTTTA 57.686 39.130 0.00 0.00 44.22 2.01
4828 8979 4.118410 CAGACTTCTAGGCTATTGTGCAG 58.882 47.826 0.00 0.00 26.27 4.41
5011 9162 8.860780 AAATAAGCATTGGCCTTAAATTTTGA 57.139 26.923 3.32 0.00 42.56 2.69
5021 9172 8.093659 TGGCCTTAAATTTTGAAAGTTAATGC 57.906 30.769 19.13 19.13 43.10 3.56
5064 9215 2.298729 TCATTTGCCTTACAACCCAAGC 59.701 45.455 0.00 0.00 38.23 4.01
5097 9248 7.553044 GCCTAAATGTCTATAAACTGAAGTGGT 59.447 37.037 0.00 0.00 0.00 4.16
5146 9297 1.290203 CCACAGCTTACACATAGCGG 58.710 55.000 0.00 0.00 43.37 5.52
5152 9303 1.006832 CTTACACATAGCGGCACCAC 58.993 55.000 1.45 0.00 0.00 4.16
5170 9321 2.041081 CCACTGGTTTAGGGGTTGATCA 59.959 50.000 0.00 0.00 45.59 2.92
5209 9360 4.752101 GCATTGCTAGATATTCAAGGTCGT 59.248 41.667 0.16 0.00 0.00 4.34
5315 9466 2.159338 CCGGATGTTTTCTCATTGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
5325 9476 1.226859 CATTGCCAGCCATTCTGCG 60.227 57.895 0.00 0.00 41.50 5.18
5327 9478 1.252904 ATTGCCAGCCATTCTGCGTT 61.253 50.000 0.00 0.00 41.50 4.84
5335 9486 1.202114 GCCATTCTGCGTTTTCCATGA 59.798 47.619 0.00 0.00 0.00 3.07
5358 9509 8.073467 TGAATTGTAGTTTCTTGGGAAAAAGT 57.927 30.769 0.00 0.00 42.22 2.66
5440 9591 7.279090 ACTGCTGTGCATAAATATTGTTACGTA 59.721 33.333 0.00 0.00 38.13 3.57
5535 9686 6.583806 CCGAATAGGCTATGAAATTTGAATGC 59.416 38.462 7.99 0.00 0.00 3.56
5536 9687 7.140705 CGAATAGGCTATGAAATTTGAATGCA 58.859 34.615 7.99 0.00 0.00 3.96
5584 9751 3.793129 GCTGGACATGAATGGCAAATACG 60.793 47.826 0.00 0.00 37.62 3.06
5649 9816 5.029650 TCACAAACAACGCATTACTCATC 57.970 39.130 0.00 0.00 0.00 2.92
5937 10106 7.335422 AGTGGTGAAATATCATTCAAGTCAGAC 59.665 37.037 0.00 0.00 40.76 3.51
6001 10170 8.644619 CAAGAGATAACAACTACGATTTCGAAA 58.355 33.333 13.91 13.91 43.02 3.46
6012 10181 7.318141 ACTACGATTTCGAAAATGTAAGGAGA 58.682 34.615 15.66 0.00 43.02 3.71
6032 10201 3.898741 AGAACCTACCTAGCCATTCTAGC 59.101 47.826 0.00 0.00 42.73 3.42
6092 10261 9.961265 ATTCATACATGCATAGTCAATTTTCAG 57.039 29.630 0.00 0.00 0.00 3.02
6104 10273 4.053295 TCAATTTTCAGCAAGCAGAAAGC 58.947 39.130 11.51 0.00 46.19 3.51
6294 10463 1.962807 TGGTTTGGCATTCCTCTGTTG 59.037 47.619 9.30 0.00 0.00 3.33
6310 10479 3.004862 CTGTTGACATCACTGCATGCTA 58.995 45.455 20.33 4.40 0.00 3.49
6314 10483 2.762327 TGACATCACTGCATGCTAGAGA 59.238 45.455 20.33 17.29 0.00 3.10
6315 10484 3.196254 TGACATCACTGCATGCTAGAGAA 59.804 43.478 20.33 2.86 0.00 2.87
6316 10485 4.186926 GACATCACTGCATGCTAGAGAAA 58.813 43.478 20.33 2.51 0.00 2.52
6317 10486 4.582869 ACATCACTGCATGCTAGAGAAAA 58.417 39.130 20.33 0.00 0.00 2.29
6329 10498 2.875094 AGAGAAAACTGAGCTGGCAT 57.125 45.000 0.00 0.00 0.00 4.40
6339 10508 0.679002 GAGCTGGCATCCATGTGTGT 60.679 55.000 0.00 0.00 30.82 3.72
6349 10518 1.768275 TCCATGTGTGTCAGTTCCACT 59.232 47.619 0.00 0.00 33.92 4.00
6390 10559 0.379669 CGACATCCTGCATTTCCAGC 59.620 55.000 0.00 0.00 0.00 4.85
6470 10643 2.093341 TCCCATGGTAAGACGGCTTTAC 60.093 50.000 9.87 5.41 35.56 2.01
6499 10672 2.501723 TCTCCTCTACATGGACAAAGGC 59.498 50.000 0.00 0.00 0.00 4.35
6516 10689 3.342377 AGGCAGCTTAGAGTTTCTTCC 57.658 47.619 0.00 0.00 0.00 3.46
6536 10710 0.107643 GTATCTCCTCCAGCAAGGCC 59.892 60.000 0.00 0.00 36.29 5.19
6556 10730 1.907739 CCATTTCTCTCCGCCTCCA 59.092 57.895 0.00 0.00 0.00 3.86
6592 10766 0.622665 ATGTGCTGGAAAGAGGGGAG 59.377 55.000 0.00 0.00 0.00 4.30
6598 10772 2.260822 CTGGAAAGAGGGGAGAACTCA 58.739 52.381 4.23 0.00 37.43 3.41
6631 10806 5.555966 TGATGTACCACTGAAATGCACTAA 58.444 37.500 0.00 0.00 0.00 2.24
6672 10852 4.928661 ACGAACTTGAGACATGTATTGC 57.071 40.909 0.00 0.00 0.00 3.56
6695 10875 7.028962 TGCTTATCATCAAACAAATCTTTCGG 58.971 34.615 0.00 0.00 0.00 4.30
6696 10876 7.094420 TGCTTATCATCAAACAAATCTTTCGGA 60.094 33.333 0.00 0.00 0.00 4.55
6697 10877 7.917505 GCTTATCATCAAACAAATCTTTCGGAT 59.082 33.333 0.00 0.00 35.97 4.18
6766 10946 5.948842 ACATATGGGGGTTGTTATCCTTAC 58.051 41.667 7.80 0.00 0.00 2.34
6776 10956 9.813446 GGGGTTGTTATCCTTACTATATATTCG 57.187 37.037 0.00 0.00 0.00 3.34
6852 11032 5.120830 GTGTGTTGAGATAGCTCGAAAATGT 59.879 40.000 0.00 0.00 44.33 2.71
6853 11033 5.120674 TGTGTTGAGATAGCTCGAAAATGTG 59.879 40.000 0.00 0.00 44.33 3.21
6909 11089 2.211806 GAGATCATGCAGGAGCTGAAC 58.788 52.381 25.31 5.92 42.74 3.18
6918 11098 1.110442 AGGAGCTGAACGAGATGGAG 58.890 55.000 0.00 0.00 0.00 3.86
7078 11258 8.917415 AAAACATCTTTTTGTGAGAGTTCTTC 57.083 30.769 0.00 0.00 0.00 2.87
7304 11484 3.509967 TGCATGGTTATATCTCGATCGGT 59.490 43.478 16.41 4.57 0.00 4.69
7338 11518 0.534877 TTCGCAATGTGGCAGTGACT 60.535 50.000 0.00 0.00 30.53 3.41
7345 11525 4.142315 GCAATGTGGCAGTGACTTTGATAT 60.142 41.667 12.22 0.00 32.76 1.63
7407 11587 0.523072 CTTGGTTCATCGGGTTGCAG 59.477 55.000 0.00 0.00 0.00 4.41
7451 11631 5.483937 TGGTCTGAACTGGTTGTATCAGTAT 59.516 40.000 0.00 0.00 43.82 2.12
7452 11632 6.043411 GGTCTGAACTGGTTGTATCAGTATC 58.957 44.000 0.00 0.00 43.82 2.24
7453 11633 5.744345 GTCTGAACTGGTTGTATCAGTATCG 59.256 44.000 0.00 0.00 43.82 2.92
7454 11634 4.430007 TGAACTGGTTGTATCAGTATCGC 58.570 43.478 0.00 0.00 43.82 4.58
7455 11635 4.159693 TGAACTGGTTGTATCAGTATCGCT 59.840 41.667 0.00 0.00 43.82 4.93
7456 11636 4.046938 ACTGGTTGTATCAGTATCGCTG 57.953 45.455 0.00 0.00 42.91 5.18
7457 11637 3.447586 ACTGGTTGTATCAGTATCGCTGT 59.552 43.478 0.00 0.00 42.91 4.40
7458 11638 4.081642 ACTGGTTGTATCAGTATCGCTGTT 60.082 41.667 0.00 0.00 42.91 3.16
7459 11639 4.180817 TGGTTGTATCAGTATCGCTGTTG 58.819 43.478 0.00 0.00 45.23 3.33
7460 11640 4.181578 GGTTGTATCAGTATCGCTGTTGT 58.818 43.478 0.00 0.00 45.23 3.32
7461 11641 4.267928 GGTTGTATCAGTATCGCTGTTGTC 59.732 45.833 0.00 0.00 45.23 3.18
7462 11642 4.712122 TGTATCAGTATCGCTGTTGTCA 57.288 40.909 0.00 0.00 45.23 3.58
7463 11643 5.262588 TGTATCAGTATCGCTGTTGTCAT 57.737 39.130 0.00 0.00 45.23 3.06
7464 11644 6.385649 TGTATCAGTATCGCTGTTGTCATA 57.614 37.500 0.00 0.00 45.23 2.15
7469 11649 6.801575 TCAGTATCGCTGTTGTCATATGTTA 58.198 36.000 1.90 0.00 45.23 2.41
7471 11651 7.926018 TCAGTATCGCTGTTGTCATATGTTATT 59.074 33.333 1.90 0.00 45.23 1.40
7791 11982 7.183112 TCAAGGGTAATGGAACTGGAAACTATA 59.817 37.037 0.00 0.00 0.00 1.31
7826 12018 7.065803 AGAGTTGACGAGAAAAGATTGAAAACA 59.934 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 208 8.343366 CAAGTAAGAGGTAAAAAGAAGTGGAAC 58.657 37.037 0.00 0.00 0.00 3.62
312 314 0.687920 TGGCATTCCACGTGAAGGTA 59.312 50.000 19.30 0.00 37.10 3.08
341 343 4.021456 GGTTTAAAACCCTCATGGACAAGG 60.021 45.833 0.00 0.00 46.12 3.61
342 344 5.134202 GGTTTAAAACCCTCATGGACAAG 57.866 43.478 0.00 0.00 46.12 3.16
351 353 7.119116 CAAAATATTGGCAGGTTTAAAACCCTC 59.881 37.037 0.00 0.00 41.53 4.30
352 354 6.939730 CAAAATATTGGCAGGTTTAAAACCCT 59.060 34.615 0.00 0.00 41.53 4.34
353 355 6.348950 GCAAAATATTGGCAGGTTTAAAACCC 60.349 38.462 0.00 0.00 43.60 4.11
354 356 6.429692 AGCAAAATATTGGCAGGTTTAAAACC 59.570 34.615 13.11 0.00 43.24 3.27
355 357 7.433708 AGCAAAATATTGGCAGGTTTAAAAC 57.566 32.000 13.11 0.00 37.02 2.43
357 359 8.128322 TCTAGCAAAATATTGGCAGGTTTAAA 57.872 30.769 13.11 0.00 37.02 1.52
358 360 7.710676 TCTAGCAAAATATTGGCAGGTTTAA 57.289 32.000 13.11 0.00 37.02 1.52
359 361 7.896383 ATCTAGCAAAATATTGGCAGGTTTA 57.104 32.000 13.11 0.00 37.02 2.01
360 362 6.796785 ATCTAGCAAAATATTGGCAGGTTT 57.203 33.333 13.11 0.00 37.02 3.27
361 363 7.896383 TTATCTAGCAAAATATTGGCAGGTT 57.104 32.000 13.11 5.06 37.02 3.50
362 364 7.039504 CCATTATCTAGCAAAATATTGGCAGGT 60.040 37.037 13.11 8.19 37.02 4.00
364 366 6.810182 GCCATTATCTAGCAAAATATTGGCAG 59.190 38.462 19.97 9.09 45.51 4.85
366 368 6.690530 TGCCATTATCTAGCAAAATATTGGC 58.309 36.000 18.95 18.95 45.95 4.52
367 369 7.762615 CCATGCCATTATCTAGCAAAATATTGG 59.237 37.037 0.00 6.04 40.46 3.16
368 370 8.308931 ACCATGCCATTATCTAGCAAAATATTG 58.691 33.333 0.00 0.00 40.46 1.90
369 371 8.426569 ACCATGCCATTATCTAGCAAAATATT 57.573 30.769 0.00 0.00 40.46 1.28
370 372 7.123247 GGACCATGCCATTATCTAGCAAAATAT 59.877 37.037 0.00 0.00 40.46 1.28
371 373 6.434028 GGACCATGCCATTATCTAGCAAAATA 59.566 38.462 0.00 0.00 40.46 1.40
372 374 5.244626 GGACCATGCCATTATCTAGCAAAAT 59.755 40.000 0.00 0.00 40.46 1.82
374 376 4.144297 GGACCATGCCATTATCTAGCAAA 58.856 43.478 0.00 0.00 40.46 3.68
375 377 3.498481 GGGACCATGCCATTATCTAGCAA 60.498 47.826 0.00 0.00 40.46 3.91
376 378 2.040278 GGGACCATGCCATTATCTAGCA 59.960 50.000 0.00 0.00 41.50 3.49
378 380 2.567169 TCGGGACCATGCCATTATCTAG 59.433 50.000 0.00 0.00 0.00 2.43
380 382 1.434188 TCGGGACCATGCCATTATCT 58.566 50.000 0.00 0.00 0.00 1.98
381 383 2.154462 CTTCGGGACCATGCCATTATC 58.846 52.381 0.00 0.00 0.00 1.75
383 385 0.465460 GCTTCGGGACCATGCCATTA 60.465 55.000 0.00 0.00 0.00 1.90
385 387 1.344953 TAGCTTCGGGACCATGCCAT 61.345 55.000 0.00 0.00 0.00 4.40
386 388 1.971505 CTAGCTTCGGGACCATGCCA 61.972 60.000 0.00 0.00 0.00 4.92
387 389 1.227674 CTAGCTTCGGGACCATGCC 60.228 63.158 0.00 0.00 0.00 4.40
389 391 1.592669 CGCTAGCTTCGGGACCATG 60.593 63.158 13.93 0.00 0.00 3.66
390 392 2.797278 CCGCTAGCTTCGGGACCAT 61.797 63.158 13.93 0.00 42.99 3.55
391 393 3.458163 CCGCTAGCTTCGGGACCA 61.458 66.667 13.93 0.00 42.99 4.02
392 394 2.029307 AATCCGCTAGCTTCGGGACC 62.029 60.000 21.84 0.00 46.43 4.46
393 395 0.179081 AAATCCGCTAGCTTCGGGAC 60.179 55.000 21.84 0.00 46.43 4.46
394 396 0.104304 GAAATCCGCTAGCTTCGGGA 59.896 55.000 21.84 12.27 46.43 5.14
398 400 1.328986 GTGCAGAAATCCGCTAGCTTC 59.671 52.381 13.93 9.64 0.00 3.86
405 407 2.523015 CATTGAAGTGCAGAAATCCGC 58.477 47.619 0.00 0.00 0.00 5.54
406 408 2.733227 GCCATTGAAGTGCAGAAATCCG 60.733 50.000 0.00 0.00 0.00 4.18
407 409 2.494870 AGCCATTGAAGTGCAGAAATCC 59.505 45.455 0.00 0.00 0.00 3.01
408 410 3.057033 ACAGCCATTGAAGTGCAGAAATC 60.057 43.478 0.00 0.00 0.00 2.17
410 412 2.294233 GACAGCCATTGAAGTGCAGAAA 59.706 45.455 0.00 0.00 0.00 2.52
411 413 1.881973 GACAGCCATTGAAGTGCAGAA 59.118 47.619 0.00 0.00 0.00 3.02
412 414 1.202794 TGACAGCCATTGAAGTGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
413 415 1.068748 GTGACAGCCATTGAAGTGCAG 60.069 52.381 0.00 0.00 0.00 4.41
414 416 0.953727 GTGACAGCCATTGAAGTGCA 59.046 50.000 0.00 0.00 0.00 4.57
416 418 2.815503 TGATGTGACAGCCATTGAAGTG 59.184 45.455 0.00 0.00 0.00 3.16
417 419 3.144657 TGATGTGACAGCCATTGAAGT 57.855 42.857 0.00 0.00 0.00 3.01
418 420 3.504906 ACTTGATGTGACAGCCATTGAAG 59.495 43.478 0.00 0.00 0.00 3.02
419 421 3.489355 ACTTGATGTGACAGCCATTGAA 58.511 40.909 0.00 0.00 0.00 2.69
420 422 3.144657 ACTTGATGTGACAGCCATTGA 57.855 42.857 0.00 0.00 0.00 2.57
433 435 0.167470 CAAGCTGCGGACACTTGATG 59.833 55.000 8.72 0.00 42.71 3.07
434 436 0.957395 CCAAGCTGCGGACACTTGAT 60.957 55.000 14.32 0.00 42.71 2.57
435 437 1.597854 CCAAGCTGCGGACACTTGA 60.598 57.895 14.32 0.00 42.71 3.02
779 4563 2.049156 CCGCAGCTGACGAAGACA 60.049 61.111 25.33 0.00 0.00 3.41
1468 5283 6.720288 ACTTTAGGCTTGAGTGTCTAGTAAGA 59.280 38.462 0.00 0.00 0.00 2.10
1629 5452 7.284919 TCATGGAACTACGCTAAAGATATGA 57.715 36.000 0.00 0.00 0.00 2.15
1718 5551 9.203421 CTGTACATATTTGACTTGACTGTAACA 57.797 33.333 0.00 0.00 0.00 2.41
1808 5641 7.683437 TCTTACATTCTCGATATATGACCGT 57.317 36.000 8.11 0.00 0.00 4.83
1939 5786 7.094890 TGTGTACCTTCTTAGAGTTCTACGAAG 60.095 40.741 20.25 20.25 46.14 3.79
1940 5787 6.712095 TGTGTACCTTCTTAGAGTTCTACGAA 59.288 38.462 7.57 7.57 35.29 3.85
1941 5788 6.148480 GTGTGTACCTTCTTAGAGTTCTACGA 59.852 42.308 0.00 0.00 0.00 3.43
1942 5789 6.313252 GTGTGTACCTTCTTAGAGTTCTACG 58.687 44.000 0.00 0.00 0.00 3.51
1943 5790 6.350027 GGGTGTGTACCTTCTTAGAGTTCTAC 60.350 46.154 0.00 0.00 46.66 2.59
1973 5822 3.792401 TGACATTGCCGTAGAACCATAG 58.208 45.455 0.00 0.00 0.00 2.23
1984 5833 1.195448 GTCTTCACACTGACATTGCCG 59.805 52.381 0.00 0.00 33.75 5.69
2044 5983 7.695480 ATACAAAAGCATGGTGTGTATGTAA 57.305 32.000 23.52 8.13 34.83 2.41
2046 5985 7.695480 TTATACAAAAGCATGGTGTGTATGT 57.305 32.000 28.14 16.16 36.38 2.29
2084 6023 0.825425 TGGCCAATCCACAAGCGAAA 60.825 50.000 0.61 0.00 40.72 3.46
2096 6035 9.700831 AAGAAAATACTTAAGACTATGGCCAAT 57.299 29.630 10.96 0.00 0.00 3.16
2142 6096 3.066291 ACAGAACATGTCCGCCAATAA 57.934 42.857 0.00 0.00 37.75 1.40
2144 6098 2.632377 CTACAGAACATGTCCGCCAAT 58.368 47.619 0.00 0.00 42.70 3.16
2150 6104 1.339055 TGCAGCCTACAGAACATGTCC 60.339 52.381 0.00 0.00 42.70 4.02
2155 6109 4.640201 GGAATTAATGCAGCCTACAGAACA 59.360 41.667 0.00 0.00 0.00 3.18
2156 6110 4.884164 AGGAATTAATGCAGCCTACAGAAC 59.116 41.667 0.00 0.00 0.00 3.01
2215 6169 3.785364 ACTCTATAGGGAAGGCAGATCC 58.215 50.000 6.63 0.00 36.16 3.36
2216 6170 5.816955 AAACTCTATAGGGAAGGCAGATC 57.183 43.478 6.63 0.00 0.00 2.75
2223 6177 7.450124 TCGCTACATAAACTCTATAGGGAAG 57.550 40.000 6.63 0.00 33.43 3.46
2227 6181 6.621613 TGCATCGCTACATAAACTCTATAGG 58.378 40.000 0.00 0.00 0.00 2.57
2231 6185 5.163550 ACACTGCATCGCTACATAAACTCTA 60.164 40.000 0.00 0.00 0.00 2.43
2235 6189 3.616821 TGACACTGCATCGCTACATAAAC 59.383 43.478 0.00 0.00 0.00 2.01
2242 6196 0.108233 TGCATGACACTGCATCGCTA 60.108 50.000 0.00 0.00 46.76 4.26
2243 6197 1.376295 TGCATGACACTGCATCGCT 60.376 52.632 0.00 0.00 46.76 4.93
2244 6198 3.180423 TGCATGACACTGCATCGC 58.820 55.556 0.00 0.00 46.76 4.58
2249 6203 2.733127 GCACAATGCATGACACTGC 58.267 52.632 0.00 0.00 44.26 4.40
2259 6213 6.327934 ACAATTTAGAAGATCAGCACAATGC 58.672 36.000 0.00 0.00 45.46 3.56
2260 6214 7.759465 AGACAATTTAGAAGATCAGCACAATG 58.241 34.615 0.00 0.00 0.00 2.82
2261 6215 7.934855 AGACAATTTAGAAGATCAGCACAAT 57.065 32.000 0.00 0.00 0.00 2.71
2262 6216 7.750229 AAGACAATTTAGAAGATCAGCACAA 57.250 32.000 0.00 0.00 0.00 3.33
2263 6217 7.750229 AAAGACAATTTAGAAGATCAGCACA 57.250 32.000 0.00 0.00 0.00 4.57
2264 6218 8.292448 TCAAAAGACAATTTAGAAGATCAGCAC 58.708 33.333 0.00 0.00 0.00 4.40
2265 6219 8.394971 TCAAAAGACAATTTAGAAGATCAGCA 57.605 30.769 0.00 0.00 0.00 4.41
2285 6239 6.318913 TGGGGAGGAAAGAACAATATCAAAA 58.681 36.000 0.00 0.00 0.00 2.44
2289 6243 5.373812 TCTGGGGAGGAAAGAACAATATC 57.626 43.478 0.00 0.00 0.00 1.63
2435 6456 9.465985 CGAGGAAATATTCTTAGAGGTAAACTC 57.534 37.037 0.00 0.00 46.98 3.01
2487 6514 4.521130 TGTGTCATCTGACTCAACTACC 57.479 45.455 11.50 0.00 43.07 3.18
2593 6626 9.260002 CAGTTCATGCTTAACCTTTGTAAAAAT 57.740 29.630 0.00 0.00 0.00 1.82
2611 6644 8.716646 TTACCATAGTTATGTGACAGTTCATG 57.283 34.615 0.00 0.00 33.11 3.07
2734 6858 2.658285 CACATGTCAGGCCCATATGTT 58.342 47.619 10.93 0.00 30.15 2.71
2736 6860 1.612676 CCACATGTCAGGCCCATATG 58.387 55.000 0.00 3.02 0.00 1.78
2737 6861 0.479815 CCCACATGTCAGGCCCATAT 59.520 55.000 0.00 0.00 0.00 1.78
2745 6869 0.617413 AGAGAAGCCCCACATGTCAG 59.383 55.000 0.00 0.00 0.00 3.51
2794 6918 5.705609 TTCTGCTTTCTTCCATGGTTTAC 57.294 39.130 12.58 0.00 0.00 2.01
2807 6931 8.093659 ACTCTCTTTTACTCATTTCTGCTTTC 57.906 34.615 0.00 0.00 0.00 2.62
2836 6962 5.694006 CACTCAACAATTGCCCGATTAAAAA 59.306 36.000 5.05 0.00 0.00 1.94
2838 6964 4.520874 TCACTCAACAATTGCCCGATTAAA 59.479 37.500 5.05 0.00 0.00 1.52
2900 7026 4.017126 GGATTAGGGGGCTATTGTTATGC 58.983 47.826 0.00 0.00 0.00 3.14
2907 7033 5.137082 TGGTAAATTGGATTAGGGGGCTATT 59.863 40.000 0.00 0.00 0.00 1.73
2914 7040 3.891366 CTGCCTGGTAAATTGGATTAGGG 59.109 47.826 0.00 0.00 0.00 3.53
2935 7061 5.652452 GGAACCTTGCATCCAAGTATTTACT 59.348 40.000 0.00 0.00 45.57 2.24
3076 7202 7.472334 AGTCTCAAGGAAATGCATTATTTGT 57.528 32.000 13.39 0.00 39.06 2.83
3101 7227 4.166725 TCATACCTCTGGATTGGCAGATTT 59.833 41.667 0.00 0.00 0.00 2.17
3135 7263 4.795962 GCATGTTTTAGGGGAGTTTGTGTG 60.796 45.833 0.00 0.00 0.00 3.82
3154 7282 4.857799 TGTGATTGTGTGTACTTTGCATG 58.142 39.130 0.00 0.00 0.00 4.06
3209 7338 7.885399 AGTAGAGTTGTTTCAAAAGCCAGATAT 59.115 33.333 0.00 0.00 0.00 1.63
3256 7386 8.451908 AATATTGCACTAAGTATGGTCTTTCC 57.548 34.615 0.00 0.00 0.00 3.13
3291 7421 5.554070 GGGCAACTAACTAAACAGGAGTAA 58.446 41.667 0.00 0.00 0.00 2.24
3299 7429 3.427098 GGCAATCGGGCAACTAACTAAAC 60.427 47.826 0.00 0.00 42.77 2.01
3312 7442 1.024271 ACATTCAATCGGCAATCGGG 58.976 50.000 0.00 0.00 39.77 5.14
3387 7517 9.573133 CTTTTTGTTTGACTACATTTCTTCTGT 57.427 29.630 0.00 0.00 0.00 3.41
3436 7570 5.163120 ACTCTCCCATTGCAATATGTCTCAT 60.163 40.000 12.53 0.00 0.00 2.90
3437 7571 4.164796 ACTCTCCCATTGCAATATGTCTCA 59.835 41.667 12.53 0.00 0.00 3.27
3438 7572 4.514441 CACTCTCCCATTGCAATATGTCTC 59.486 45.833 12.53 0.00 0.00 3.36
3439 7573 4.458397 CACTCTCCCATTGCAATATGTCT 58.542 43.478 12.53 0.00 0.00 3.41
3440 7574 3.004106 GCACTCTCCCATTGCAATATGTC 59.996 47.826 12.53 0.00 36.22 3.06
3441 7575 2.954318 GCACTCTCCCATTGCAATATGT 59.046 45.455 12.53 2.39 36.22 2.29
3442 7576 2.953648 TGCACTCTCCCATTGCAATATG 59.046 45.455 12.53 6.33 43.16 1.78
3444 7578 2.804986 TGCACTCTCCCATTGCAATA 57.195 45.000 12.53 0.00 43.16 1.90
3447 7585 0.895100 GGTTGCACTCTCCCATTGCA 60.895 55.000 0.00 0.00 44.40 4.08
3453 7591 2.359900 CATAAGTGGTTGCACTCTCCC 58.640 52.381 0.00 0.00 33.73 4.30
3457 7595 1.826385 AGGCATAAGTGGTTGCACTC 58.174 50.000 0.00 0.00 40.66 3.51
3475 7613 6.791887 ATATGACTACAATGGCATCGAAAG 57.208 37.500 0.00 0.00 0.00 2.62
3489 7628 5.822519 TGCAATTCCTGTCCAATATGACTAC 59.177 40.000 0.00 0.00 36.21 2.73
3495 7634 7.068702 TCCTTATTGCAATTCCTGTCCAATAT 58.931 34.615 18.75 0.00 0.00 1.28
3517 7656 4.223700 TGAGACATGTAGTGCTTTCATCCT 59.776 41.667 0.00 0.00 0.00 3.24
3561 7701 7.201929 TGTCCAGACACATACAAGTACTTTGTA 60.202 37.037 5.07 11.98 44.45 2.41
3603 7743 1.145119 CCCAACCTAATAGGGAAGCCC 59.855 57.143 11.52 0.00 45.80 5.19
3604 7744 1.145119 CCCCAACCTAATAGGGAAGCC 59.855 57.143 11.52 0.00 45.80 4.35
3605 7745 2.132686 TCCCCAACCTAATAGGGAAGC 58.867 52.381 11.52 0.00 45.73 3.86
3609 7749 5.277250 ACAAATTTCCCCAACCTAATAGGG 58.723 41.667 11.52 0.00 40.58 3.53
3611 7751 9.869757 CTTTAACAAATTTCCCCAACCTAATAG 57.130 33.333 0.00 0.00 0.00 1.73
3612 7752 9.382307 ACTTTAACAAATTTCCCCAACCTAATA 57.618 29.630 0.00 0.00 0.00 0.98
3615 7755 6.042208 CCACTTTAACAAATTTCCCCAACCTA 59.958 38.462 0.00 0.00 0.00 3.08
3616 7756 5.163248 CCACTTTAACAAATTTCCCCAACCT 60.163 40.000 0.00 0.00 0.00 3.50
3617 7757 5.060506 CCACTTTAACAAATTTCCCCAACC 58.939 41.667 0.00 0.00 0.00 3.77
3618 7758 5.060506 CCCACTTTAACAAATTTCCCCAAC 58.939 41.667 0.00 0.00 0.00 3.77
3619 7759 4.722279 ACCCACTTTAACAAATTTCCCCAA 59.278 37.500 0.00 0.00 0.00 4.12
3620 7760 4.299485 ACCCACTTTAACAAATTTCCCCA 58.701 39.130 0.00 0.00 0.00 4.96
3621 7761 4.967084 ACCCACTTTAACAAATTTCCCC 57.033 40.909 0.00 0.00 0.00 4.81
3622 7762 6.707161 GGTTTACCCACTTTAACAAATTTCCC 59.293 38.462 0.00 0.00 0.00 3.97
3623 7763 7.273712 TGGTTTACCCACTTTAACAAATTTCC 58.726 34.615 0.00 0.00 38.72 3.13
3639 7779 4.953579 TCTGCTTTATTCCATGGTTTACCC 59.046 41.667 12.58 0.00 34.29 3.69
3641 7781 8.250332 TCATTTCTGCTTTATTCCATGGTTTAC 58.750 33.333 12.58 0.00 0.00 2.01
3642 7782 8.359875 TCATTTCTGCTTTATTCCATGGTTTA 57.640 30.769 12.58 1.85 0.00 2.01
3643 7783 7.038799 ACTCATTTCTGCTTTATTCCATGGTTT 60.039 33.333 12.58 2.90 0.00 3.27
3644 7784 6.438425 ACTCATTTCTGCTTTATTCCATGGTT 59.562 34.615 12.58 3.29 0.00 3.67
3646 7786 6.461110 ACTCATTTCTGCTTTATTCCATGG 57.539 37.500 4.97 4.97 0.00 3.66
3647 7787 9.859427 TTTTACTCATTTCTGCTTTATTCCATG 57.141 29.630 0.00 0.00 0.00 3.66
3649 7789 9.295825 TCTTTTACTCATTTCTGCTTTATTCCA 57.704 29.630 0.00 0.00 0.00 3.53
3650 7790 9.561270 GTCTTTTACTCATTTCTGCTTTATTCC 57.439 33.333 0.00 0.00 0.00 3.01
3651 7791 9.561270 GGTCTTTTACTCATTTCTGCTTTATTC 57.439 33.333 0.00 0.00 0.00 1.75
3652 7792 9.077885 TGGTCTTTTACTCATTTCTGCTTTATT 57.922 29.630 0.00 0.00 0.00 1.40
3653 7793 8.635765 TGGTCTTTTACTCATTTCTGCTTTAT 57.364 30.769 0.00 0.00 0.00 1.40
3654 7794 8.635765 ATGGTCTTTTACTCATTTCTGCTTTA 57.364 30.769 0.00 0.00 0.00 1.85
3655 7795 6.959639 TGGTCTTTTACTCATTTCTGCTTT 57.040 33.333 0.00 0.00 0.00 3.51
3656 7796 7.014615 ACAATGGTCTTTTACTCATTTCTGCTT 59.985 33.333 0.00 0.00 30.93 3.91
3657 7797 6.491403 ACAATGGTCTTTTACTCATTTCTGCT 59.509 34.615 0.00 0.00 30.93 4.24
3658 7798 6.681777 ACAATGGTCTTTTACTCATTTCTGC 58.318 36.000 0.00 0.00 30.93 4.26
3659 7799 7.115378 GCAACAATGGTCTTTTACTCATTTCTG 59.885 37.037 0.00 0.00 30.93 3.02
3660 7800 7.147976 GCAACAATGGTCTTTTACTCATTTCT 58.852 34.615 0.00 0.00 30.93 2.52
3661 7801 6.366061 GGCAACAATGGTCTTTTACTCATTTC 59.634 38.462 0.00 0.00 30.93 2.17
3662 7802 6.041979 AGGCAACAATGGTCTTTTACTCATTT 59.958 34.615 0.00 0.00 41.41 2.32
3663 7803 5.539955 AGGCAACAATGGTCTTTTACTCATT 59.460 36.000 0.00 0.00 41.41 2.57
3664 7804 5.079643 AGGCAACAATGGTCTTTTACTCAT 58.920 37.500 0.00 0.00 41.41 2.90
3665 7805 4.469657 AGGCAACAATGGTCTTTTACTCA 58.530 39.130 0.00 0.00 41.41 3.41
3666 7806 5.453567 AAGGCAACAATGGTCTTTTACTC 57.546 39.130 0.00 0.00 41.41 2.59
3667 7807 5.830991 TGTAAGGCAACAATGGTCTTTTACT 59.169 36.000 0.00 0.00 41.41 2.24
3668 7808 6.079424 TGTAAGGCAACAATGGTCTTTTAC 57.921 37.500 0.00 0.00 41.41 2.01
3669 7809 5.278758 GCTGTAAGGCAACAATGGTCTTTTA 60.279 40.000 0.00 0.00 41.41 1.52
3670 7810 4.501400 GCTGTAAGGCAACAATGGTCTTTT 60.501 41.667 0.00 0.00 41.41 2.27
3671 7811 3.005791 GCTGTAAGGCAACAATGGTCTTT 59.994 43.478 0.00 0.00 41.41 2.52
3672 7812 2.558359 GCTGTAAGGCAACAATGGTCTT 59.442 45.455 0.00 0.00 41.41 3.01
3673 7813 2.162681 GCTGTAAGGCAACAATGGTCT 58.837 47.619 0.00 0.00 41.41 3.85
3683 7823 3.325425 TGTACTAAACCTGCTGTAAGGCA 59.675 43.478 0.00 0.00 41.46 4.75
3690 7830 2.679837 CTGGCATGTACTAAACCTGCTG 59.320 50.000 0.00 0.00 45.83 4.41
3691 7831 2.571653 TCTGGCATGTACTAAACCTGCT 59.428 45.455 0.00 0.00 45.83 4.24
3704 7844 9.350357 GCACAATATTTAGAATAATCTGGCATG 57.650 33.333 0.00 0.00 37.10 4.06
3705 7845 8.526147 GGCACAATATTTAGAATAATCTGGCAT 58.474 33.333 0.00 0.00 37.10 4.40
3729 7877 7.054751 ACTAGAAACCCTTATGTTCTTATGGC 58.945 38.462 0.00 0.00 0.00 4.40
3737 7885 5.514310 GGTGTGGACTAGAAACCCTTATGTT 60.514 44.000 0.00 0.00 0.00 2.71
3739 7887 4.225267 AGGTGTGGACTAGAAACCCTTATG 59.775 45.833 0.00 0.00 0.00 1.90
3774 7922 7.284919 AGGAGGAAAAACGATAACAAATTGT 57.715 32.000 0.00 0.00 0.00 2.71
3851 7999 7.732140 AGAGGACATGATGAATTCTCCATAGTA 59.268 37.037 7.05 0.00 0.00 1.82
3856 8004 4.718276 TCAGAGGACATGATGAATTCTCCA 59.282 41.667 7.05 5.00 0.00 3.86
3869 8017 1.413445 GATGCTGCTCTCAGAGGACAT 59.587 52.381 3.18 7.33 42.95 3.06
3874 8022 0.528033 CCGTGATGCTGCTCTCAGAG 60.528 60.000 0.00 0.00 42.95 3.35
3892 8040 2.206576 AACCTGAAGAAGACCATGCC 57.793 50.000 0.00 0.00 0.00 4.40
3939 8087 8.304596 TGTAATCCATAACTACTAGCATACAGC 58.695 37.037 0.00 0.00 46.19 4.40
3940 8088 9.627395 GTGTAATCCATAACTACTAGCATACAG 57.373 37.037 0.00 0.00 0.00 2.74
3945 8093 8.755028 TGAAAGTGTAATCCATAACTACTAGCA 58.245 33.333 0.00 0.00 0.00 3.49
4062 8210 2.775384 AGGTACACCACACCAGAAAAGA 59.225 45.455 0.38 0.00 38.62 2.52
4143 8291 6.783977 AGCATGGGTTATGTATCATTTCCAAT 59.216 34.615 0.00 0.00 39.08 3.16
4146 8294 6.655078 AAGCATGGGTTATGTATCATTTCC 57.345 37.500 0.00 0.00 39.08 3.13
4198 8347 4.826733 TCCTGTTTGCAGAGCTAAATTCAA 59.173 37.500 0.00 0.00 45.28 2.69
4201 8350 5.337009 CCATTCCTGTTTGCAGAGCTAAATT 60.337 40.000 0.00 0.00 45.28 1.82
4203 8352 3.507233 CCATTCCTGTTTGCAGAGCTAAA 59.493 43.478 0.00 0.00 45.28 1.85
4240 8389 6.491745 TCCCAAGTGCACATCTGTTTATTTAA 59.508 34.615 21.04 0.00 0.00 1.52
4255 8404 3.831323 CCAATATATGGTCCCAAGTGCA 58.169 45.455 0.00 0.00 44.85 4.57
4321 8470 9.877178 TCTCCACTACAAGAAGAAATTTCTATC 57.123 33.333 20.76 18.05 36.28 2.08
4338 8487 9.817809 TTCTACATCATGTTATTTCTCCACTAC 57.182 33.333 0.00 0.00 0.00 2.73
4406 8555 4.428294 TCTGCCATAGAAAATCCTCCTG 57.572 45.455 0.00 0.00 30.84 3.86
4435 8584 3.119708 GCCTTCAGTTCATTCGCTTGATT 60.120 43.478 0.00 0.00 0.00 2.57
4443 8592 1.004745 TCCAGGGCCTTCAGTTCATTC 59.995 52.381 1.32 0.00 0.00 2.67
4551 8700 4.904590 CCAAACCCACCACGCCCA 62.905 66.667 0.00 0.00 0.00 5.36
4553 8702 2.983592 CTCCAAACCCACCACGCC 60.984 66.667 0.00 0.00 0.00 5.68
4614 8765 7.235079 TCAATGGGGTAACATCTGAAAACTTA 58.765 34.615 0.00 0.00 39.74 2.24
4617 8768 5.975693 TCAATGGGGTAACATCTGAAAAC 57.024 39.130 0.00 0.00 39.74 2.43
4624 8775 5.975693 TTTCACTTCAATGGGGTAACATC 57.024 39.130 0.00 0.00 39.74 3.06
4704 8855 3.563390 AGAGCTTCTTCACAGCAACTTTC 59.437 43.478 0.00 0.00 39.99 2.62
4713 8864 5.733676 TGCAATATACAGAGCTTCTTCACA 58.266 37.500 0.00 0.00 0.00 3.58
4828 8979 0.944386 ATCAGTTCACCGTGTGCAAC 59.056 50.000 0.00 0.00 32.98 4.17
4869 9020 5.499004 ACCTTTGTGTTTCCTCTGCTATA 57.501 39.130 0.00 0.00 0.00 1.31
4876 9027 4.023963 GCAGAGTAACCTTTGTGTTTCCTC 60.024 45.833 0.00 0.00 0.00 3.71
4950 9101 5.449107 AATGAGGATATGATGTTGCAAGC 57.551 39.130 0.00 0.00 0.00 4.01
4992 9143 6.558771 ACTTTCAAAATTTAAGGCCAATGC 57.441 33.333 5.01 0.00 0.00 3.56
5011 9162 4.622260 ATTTGGTGCTGGCATTAACTTT 57.378 36.364 0.00 0.00 0.00 2.66
5021 9172 3.181429 ACCCCATAGATATTTGGTGCTGG 60.181 47.826 0.00 0.00 0.00 4.85
5022 9173 4.074970 GACCCCATAGATATTTGGTGCTG 58.925 47.826 0.00 0.00 0.00 4.41
5072 9223 9.449719 AACCACTTCAGTTTATAGACATTTAGG 57.550 33.333 0.00 0.00 0.00 2.69
5078 9229 9.616156 TTACAAAACCACTTCAGTTTATAGACA 57.384 29.630 0.00 0.00 36.44 3.41
5097 9248 3.769844 TGACCCCACAGCTTTTTACAAAA 59.230 39.130 0.00 0.00 0.00 2.44
5127 9278 1.290203 CCGCTATGTGTAAGCTGTGG 58.710 55.000 0.00 0.00 37.85 4.17
5146 9297 0.178973 AACCCCTAAACCAGTGGTGC 60.179 55.000 17.56 0.00 35.34 5.01
5152 9303 6.014669 TCAATTTTGATCAACCCCTAAACCAG 60.015 38.462 7.89 0.00 31.01 4.00
5170 9321 6.730960 AGCAATGCGATCAAATTCAATTTT 57.269 29.167 0.00 0.00 0.00 1.82
5185 9336 4.143242 CGACCTTGAATATCTAGCAATGCG 60.143 45.833 0.00 0.00 0.00 4.73
5190 9341 5.339008 AACACGACCTTGAATATCTAGCA 57.661 39.130 0.00 0.00 0.00 3.49
5221 9372 2.041216 AGGCTCCCGAATTAGTTTTGGT 59.959 45.455 0.00 0.00 37.18 3.67
5235 9386 2.223572 CGATTGCAATTGTAAGGCTCCC 60.224 50.000 14.33 0.00 0.00 4.30
5277 9428 2.035442 GGCAGAAACCACTCTCGCC 61.035 63.158 0.00 0.00 34.61 5.54
5278 9429 2.383527 CGGCAGAAACCACTCTCGC 61.384 63.158 0.00 0.00 0.00 5.03
5279 9430 1.738099 CCGGCAGAAACCACTCTCG 60.738 63.158 0.00 0.00 0.00 4.04
5280 9431 0.250513 ATCCGGCAGAAACCACTCTC 59.749 55.000 0.00 0.00 0.00 3.20
5281 9432 0.036010 CATCCGGCAGAAACCACTCT 60.036 55.000 0.00 0.00 0.00 3.24
5282 9433 0.321653 ACATCCGGCAGAAACCACTC 60.322 55.000 0.00 0.00 0.00 3.51
5315 9466 1.202114 TCATGGAAAACGCAGAATGGC 59.798 47.619 0.00 0.00 35.86 4.40
5325 9476 7.384932 CCCAAGAAACTACAATTCATGGAAAAC 59.615 37.037 11.02 0.00 44.46 2.43
5327 9478 6.780031 TCCCAAGAAACTACAATTCATGGAAA 59.220 34.615 11.02 0.00 44.46 3.13
5358 9509 7.148255 ACGCTAGATGATTTGAGCAAATGTTTA 60.148 33.333 12.73 2.06 40.77 2.01
5361 9512 4.637534 ACGCTAGATGATTTGAGCAAATGT 59.362 37.500 12.73 2.34 40.77 2.71
5412 9563 8.282592 CGTAACAATATTTATGCACAGCAGTAT 58.717 33.333 0.00 0.00 43.65 2.12
5416 9567 6.429791 ACGTAACAATATTTATGCACAGCA 57.570 33.333 0.00 0.00 44.86 4.41
5417 9568 7.582679 CACTACGTAACAATATTTATGCACAGC 59.417 37.037 0.00 0.00 0.00 4.40
5450 9601 8.753133 TGTATGAGTGACACTCTGAAGAAATAT 58.247 33.333 30.51 17.30 45.27 1.28
5494 9645 6.102663 CCTATTCGGCATACAGATTTAGGAG 58.897 44.000 0.00 0.00 30.43 3.69
5584 9751 6.239036 GCAGATCCCCTTAATCATTTGGTAAC 60.239 42.308 0.00 0.00 0.00 2.50
5649 9816 3.257393 CGTTCTCAGGTTTCAGATCCAG 58.743 50.000 0.00 0.00 0.00 3.86
5739 9906 5.581126 TGCTTGGTCACAATTATGGATTC 57.419 39.130 0.00 0.00 35.73 2.52
5863 10030 5.704354 TCCCCTGCATGACAATATACAATT 58.296 37.500 0.00 0.00 0.00 2.32
5937 10106 6.885918 TGATTATGACACCCAAGCCATATATG 59.114 38.462 5.68 5.68 0.00 1.78
5976 10145 8.752766 TTTCGAAATCGTAGTTGTTATCTCTT 57.247 30.769 6.47 0.00 40.80 2.85
5997 10166 5.731591 AGGTAGGTTCTCCTTACATTTTCG 58.268 41.667 0.00 0.00 42.12 3.46
6001 10170 4.654724 GGCTAGGTAGGTTCTCCTTACATT 59.345 45.833 0.00 0.00 42.12 2.71
6012 10181 3.654273 TGCTAGAATGGCTAGGTAGGTT 58.346 45.455 0.00 0.00 46.01 3.50
6018 10187 5.555017 ACAACATATGCTAGAATGGCTAGG 58.445 41.667 1.58 0.00 46.01 3.02
6067 10236 7.916977 GCTGAAAATTGACTATGCATGTATGAA 59.083 33.333 10.16 0.00 0.00 2.57
6294 10463 3.449528 TCTCTAGCATGCAGTGATGTC 57.550 47.619 21.98 0.00 0.00 3.06
6310 10479 2.617532 GGATGCCAGCTCAGTTTTCTCT 60.618 50.000 0.00 0.00 0.00 3.10
6314 10483 1.822990 CATGGATGCCAGCTCAGTTTT 59.177 47.619 0.00 0.00 36.75 2.43
6315 10484 1.272313 ACATGGATGCCAGCTCAGTTT 60.272 47.619 0.00 0.00 36.75 2.66
6316 10485 0.330604 ACATGGATGCCAGCTCAGTT 59.669 50.000 0.00 0.00 36.75 3.16
6317 10486 0.393944 CACATGGATGCCAGCTCAGT 60.394 55.000 0.00 0.00 36.75 3.41
6329 10498 2.254546 GTGGAACTGACACACATGGA 57.745 50.000 0.00 0.00 38.67 3.41
6349 10518 2.203922 TGGGAGGTGCTGCAGGTA 60.204 61.111 17.12 0.00 0.00 3.08
6390 10559 2.122729 TCTCCAGGTCCAGGGTGG 59.877 66.667 0.00 0.00 39.43 4.61
6470 10643 5.241728 TGTCCATGTAGAGGAGATAACGATG 59.758 44.000 0.00 0.00 35.42 3.84
6499 10672 5.897050 AGATACGGAAGAAACTCTAAGCTG 58.103 41.667 0.00 0.00 0.00 4.24
6516 10689 0.249657 GCCTTGCTGGAGGAGATACG 60.250 60.000 5.67 0.00 39.25 3.06
6536 10710 1.884926 GAGGCGGAGAGAAATGGCG 60.885 63.158 0.00 0.00 0.00 5.69
6538 10712 0.179062 CTGGAGGCGGAGAGAAATGG 60.179 60.000 0.00 0.00 0.00 3.16
6556 10730 3.433314 GCACATGGAGATGGAAGATGACT 60.433 47.826 0.00 0.00 33.39 3.41
6592 10766 6.818644 TGGTACATCAATAAAGAGCTGAGTTC 59.181 38.462 0.00 0.00 0.00 3.01
6598 10772 6.299805 TCAGTGGTACATCAATAAAGAGCT 57.700 37.500 0.00 0.00 44.52 4.09
6631 10806 3.006967 CGTAGTGCTTTCCATAGGCCTAT 59.993 47.826 20.16 20.16 0.00 2.57
6672 10852 9.793252 AATCCGAAAGATTTGTTTGATGATAAG 57.207 29.630 0.00 0.00 42.86 1.73
6692 10872 6.822442 TGAACTAACTTATGCCATAATCCGA 58.178 36.000 0.00 0.00 0.00 4.55
6693 10873 7.490962 TTGAACTAACTTATGCCATAATCCG 57.509 36.000 0.00 0.00 0.00 4.18
6766 10946 8.812147 TGCCACTGTAAAGTTCGAATATATAG 57.188 34.615 0.00 5.70 0.00 1.31
6776 10956 6.735130 AGTGTTTTATGCCACTGTAAAGTTC 58.265 36.000 0.00 0.00 40.30 3.01
6852 11032 5.104941 CCTCTTATGTTGGTCATACTCCACA 60.105 44.000 0.00 0.00 38.55 4.17
6853 11033 5.360591 CCTCTTATGTTGGTCATACTCCAC 58.639 45.833 0.00 0.00 38.55 4.02
6909 11089 4.339530 TCTTGGATAGTGTTCTCCATCTCG 59.660 45.833 0.00 0.00 41.09 4.04
6918 11098 4.873259 GGCTTCTTCTCTTGGATAGTGTTC 59.127 45.833 0.00 0.00 0.00 3.18
7045 11225 9.730420 TCTCACAAAAAGATGTTTTACTAAAGC 57.270 29.630 0.37 0.00 34.64 3.51
7304 11484 3.378911 TGCGAATGACACTGTTACAGA 57.621 42.857 20.07 0.00 35.18 3.41
7338 11518 3.761218 ACACAATTGGCCACGATATCAAA 59.239 39.130 3.88 0.00 0.00 2.69
7345 11525 1.268794 CGAAAACACAATTGGCCACGA 60.269 47.619 3.88 0.00 0.00 4.35
7407 11587 1.770294 AGTGCTAGCTAGGTCTGGTC 58.230 55.000 22.10 4.24 0.00 4.02
7451 11631 5.182487 ACCAATAACATATGACAACAGCGA 58.818 37.500 10.38 0.00 0.00 4.93
7452 11632 5.484173 ACCAATAACATATGACAACAGCG 57.516 39.130 10.38 0.00 0.00 5.18
7453 11633 9.289303 CTTTAACCAATAACATATGACAACAGC 57.711 33.333 10.38 0.00 0.00 4.40
7469 11649 8.477419 TTGTCCTCTCATTTTCTTTAACCAAT 57.523 30.769 0.00 0.00 0.00 3.16
7471 11651 8.359642 CAATTGTCCTCTCATTTTCTTTAACCA 58.640 33.333 0.00 0.00 0.00 3.67
7791 11982 2.693591 TCTCGTCAACTCTTGGAACACT 59.306 45.455 0.00 0.00 39.29 3.55
7826 12018 6.942163 ACTGAAGCATATGGTACCATATCT 57.058 37.500 34.97 29.60 44.91 1.98
7970 12166 6.545504 TCACAATCTTTTGAGAGCACTTAC 57.454 37.500 0.00 0.00 36.64 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.