Multiple sequence alignment - TraesCS5D01G523700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G523700 chr5D 100.000 5231 0 0 1 5231 543403860 543409090 0.000000e+00 9660.0
1 TraesCS5D01G523700 chr5D 85.068 221 24 6 2558 2776 542111710 542111497 3.170000e-52 217.0
2 TraesCS5D01G523700 chr5D 74.947 475 83 29 4768 5222 542111445 542110987 8.950000e-43 185.0
3 TraesCS5D01G523700 chr4A 94.319 4418 185 28 823 5231 695974433 695978793 0.000000e+00 6708.0
4 TraesCS5D01G523700 chr4A 94.391 4386 169 26 823 5186 625833770 625829440 0.000000e+00 6665.0
5 TraesCS5D01G523700 chr4A 89.474 399 41 1 338 735 695973641 695974039 2.170000e-138 503.0
6 TraesCS5D01G523700 chr4A 81.699 306 47 5 34 335 714059852 714059552 4.050000e-61 246.0
7 TraesCS5D01G523700 chr4A 90.400 125 10 2 334 458 625834220 625834098 4.190000e-36 163.0
8 TraesCS5D01G523700 chr4A 96.154 52 2 0 5179 5230 625828607 625828556 9.330000e-13 86.1
9 TraesCS5D01G523700 chr5B 94.272 4225 174 20 994 5193 557247616 557251797 0.000000e+00 6399.0
10 TraesCS5D01G523700 chr5B 86.641 524 37 3 334 824 557246716 557247239 2.750000e-152 549.0
11 TraesCS5D01G523700 chr5B 96.364 55 2 0 823 877 557247562 557247616 2.010000e-14 91.6
12 TraesCS5D01G523700 chr2B 88.599 307 23 8 35 335 801185078 801184778 3.850000e-96 363.0
13 TraesCS5D01G523700 chr2D 85.531 311 29 12 33 335 649783407 649783105 1.410000e-80 311.0
14 TraesCS5D01G523700 chr7D 82.486 354 37 2 489 819 5437325 5436974 2.380000e-73 287.0
15 TraesCS5D01G523700 chr7D 82.524 309 39 10 35 336 622043500 622043800 1.870000e-64 257.0
16 TraesCS5D01G523700 chr7B 82.315 311 46 4 35 341 618100848 618100543 1.440000e-65 261.0
17 TraesCS5D01G523700 chr4D 82.410 307 41 8 35 335 484376848 484377147 6.720000e-64 255.0
18 TraesCS5D01G523700 chr3D 82.166 314 41 10 30 336 604111390 604111695 6.720000e-64 255.0
19 TraesCS5D01G523700 chr3D 81.081 111 10 9 374 474 253508346 253508455 1.560000e-10 78.7
20 TraesCS5D01G523700 chr3B 81.967 305 46 5 35 335 130887334 130887633 3.130000e-62 250.0
21 TraesCS5D01G523700 chr4B 81.759 307 44 6 33 335 7202555 7202853 4.050000e-61 246.0
22 TraesCS5D01G523700 chrUn 81.731 104 8 7 358 452 308870817 308870716 5.620000e-10 76.8
23 TraesCS5D01G523700 chrUn 81.731 104 8 7 358 452 308875799 308875900 5.620000e-10 76.8
24 TraesCS5D01G523700 chrUn 81.731 104 8 7 358 452 385764929 385765030 5.620000e-10 76.8
25 TraesCS5D01G523700 chrUn 81.731 104 8 7 358 452 385775812 385775711 5.620000e-10 76.8
26 TraesCS5D01G523700 chrUn 81.731 104 8 7 358 452 469805120 469805221 5.620000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G523700 chr5D 543403860 543409090 5230 False 9660.000000 9660 100.000000 1 5231 1 chr5D.!!$F1 5230
1 TraesCS5D01G523700 chr5D 542110987 542111710 723 True 201.000000 217 80.007500 2558 5222 2 chr5D.!!$R1 2664
2 TraesCS5D01G523700 chr4A 695973641 695978793 5152 False 3605.500000 6708 91.896500 338 5231 2 chr4A.!!$F1 4893
3 TraesCS5D01G523700 chr4A 625828556 625834220 5664 True 2304.700000 6665 93.648333 334 5230 3 chr4A.!!$R2 4896
4 TraesCS5D01G523700 chr5B 557246716 557251797 5081 False 2346.533333 6399 92.425667 334 5193 3 chr5B.!!$F1 4859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.035343 GACAGCACCCCTTTAGTCCC 60.035 60.0 0.00 0.0 0.0 4.46 F
981 1451 0.109597 TCGCTTAAACCTCGTCCGTC 60.110 55.0 0.00 0.0 0.0 4.79 F
1283 1753 0.250295 CTCTTCCTCCGCAACAACCA 60.250 55.0 0.00 0.0 0.0 3.67 F
2649 3119 0.256752 CAGTCCATGGCCATGAAGGA 59.743 55.0 41.32 29.3 41.2 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2468 0.682209 TACCTAAGCGAGCGAACCCT 60.682 55.0 0.00 0.0 0.00 4.34 R
2649 3119 0.396974 CCAGGAGCACTAGAGCCTCT 60.397 60.0 8.67 0.0 34.23 3.69 R
2820 3290 0.884514 GGAGGAAGCCAAAGCACTTC 59.115 55.0 0.00 0.0 43.56 3.01 R
4621 5098 0.035176 CCCACAAAATGCCCCAAGTG 59.965 55.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.978876 CCCCTTTAGTCTGGGTTGG 57.021 57.895 0.00 0.00 41.82 3.77
23 24 1.368374 CCCCTTTAGTCTGGGTTGGA 58.632 55.000 0.00 0.00 41.82 3.53
24 25 1.282157 CCCCTTTAGTCTGGGTTGGAG 59.718 57.143 0.00 0.00 41.82 3.86
25 26 1.282157 CCCTTTAGTCTGGGTTGGAGG 59.718 57.143 0.00 0.00 38.65 4.30
26 27 1.985895 CCTTTAGTCTGGGTTGGAGGT 59.014 52.381 0.00 0.00 0.00 3.85
27 28 3.178865 CCTTTAGTCTGGGTTGGAGGTA 58.821 50.000 0.00 0.00 0.00 3.08
28 29 3.585732 CCTTTAGTCTGGGTTGGAGGTAA 59.414 47.826 0.00 0.00 0.00 2.85
29 30 4.565028 CCTTTAGTCTGGGTTGGAGGTAAC 60.565 50.000 0.00 0.00 0.00 2.50
39 40 4.330250 GGTTGGAGGTAACCTTTTAGTCC 58.670 47.826 0.00 0.00 45.29 3.85
40 41 4.330250 GTTGGAGGTAACCTTTTAGTCCC 58.670 47.826 0.00 0.00 31.76 4.46
41 42 2.568509 TGGAGGTAACCTTTTAGTCCCG 59.431 50.000 0.00 0.00 31.76 5.14
42 43 2.093288 GGAGGTAACCTTTTAGTCCCGG 60.093 54.545 0.00 0.00 31.76 5.73
43 44 2.568956 GAGGTAACCTTTTAGTCCCGGT 59.431 50.000 0.00 0.00 31.76 5.28
44 45 2.981784 AGGTAACCTTTTAGTCCCGGTT 59.018 45.455 0.00 0.00 42.10 4.44
45 46 3.076621 GGTAACCTTTTAGTCCCGGTTG 58.923 50.000 0.00 0.00 39.85 3.77
46 47 2.281539 AACCTTTTAGTCCCGGTTGG 57.718 50.000 0.00 0.00 38.27 3.77
47 48 1.142936 ACCTTTTAGTCCCGGTTGGT 58.857 50.000 0.00 0.00 34.77 3.67
48 49 2.337849 ACCTTTTAGTCCCGGTTGGTA 58.662 47.619 0.00 0.00 34.77 3.25
49 50 2.303890 ACCTTTTAGTCCCGGTTGGTAG 59.696 50.000 0.00 0.00 34.77 3.18
50 51 2.353323 CTTTTAGTCCCGGTTGGTAGC 58.647 52.381 0.00 0.00 34.77 3.58
51 52 1.648116 TTTAGTCCCGGTTGGTAGCT 58.352 50.000 0.00 0.00 34.77 3.32
52 53 1.188863 TTAGTCCCGGTTGGTAGCTC 58.811 55.000 0.00 0.00 34.77 4.09
53 54 0.685458 TAGTCCCGGTTGGTAGCTCC 60.685 60.000 0.00 0.00 34.77 4.70
54 55 2.120940 TCCCGGTTGGTAGCTCCA 59.879 61.111 0.00 0.00 45.60 3.86
61 62 2.120940 TGGTAGCTCCAACCCGGA 59.879 61.111 0.73 0.00 44.12 5.14
62 63 2.288025 TGGTAGCTCCAACCCGGAC 61.288 63.158 0.73 0.00 44.12 4.79
63 64 1.988406 GGTAGCTCCAACCCGGACT 60.988 63.158 0.73 0.00 39.64 3.85
64 65 0.685458 GGTAGCTCCAACCCGGACTA 60.685 60.000 0.73 0.00 39.64 2.59
65 66 1.188863 GTAGCTCCAACCCGGACTAA 58.811 55.000 0.73 0.00 39.64 2.24
66 67 1.551883 GTAGCTCCAACCCGGACTAAA 59.448 52.381 0.73 0.00 39.64 1.85
67 68 0.613777 AGCTCCAACCCGGACTAAAG 59.386 55.000 0.73 0.00 39.64 1.85
68 69 0.392595 GCTCCAACCCGGACTAAAGG 60.393 60.000 0.73 0.00 39.64 3.11
69 70 0.981943 CTCCAACCCGGACTAAAGGT 59.018 55.000 0.73 0.00 39.64 3.50
70 71 0.978907 TCCAACCCGGACTAAAGGTC 59.021 55.000 0.73 0.00 39.64 3.85
71 72 0.981943 CCAACCCGGACTAAAGGTCT 59.018 55.000 0.73 0.00 43.97 3.85
72 73 2.181975 CCAACCCGGACTAAAGGTCTA 58.818 52.381 0.73 0.00 43.97 2.59
73 74 2.568509 CCAACCCGGACTAAAGGTCTAA 59.431 50.000 0.73 0.00 43.97 2.10
74 75 3.593096 CAACCCGGACTAAAGGTCTAAC 58.407 50.000 0.73 0.00 43.97 2.34
75 76 2.182827 ACCCGGACTAAAGGTCTAACC 58.817 52.381 0.73 0.00 43.97 2.85
86 87 1.857965 GGTCTAACCTAAGTCCCGGT 58.142 55.000 0.00 0.00 34.73 5.28
87 88 2.182827 GGTCTAACCTAAGTCCCGGTT 58.817 52.381 0.00 0.00 45.06 4.44
88 89 2.093816 GGTCTAACCTAAGTCCCGGTTG 60.094 54.545 0.00 0.00 43.06 3.77
89 90 2.093816 GTCTAACCTAAGTCCCGGTTGG 60.094 54.545 0.00 1.44 43.06 3.77
90 91 1.904537 CTAACCTAAGTCCCGGTTGGT 59.095 52.381 0.00 0.00 43.06 3.67
91 92 0.399075 AACCTAAGTCCCGGTTGGTG 59.601 55.000 0.00 0.00 41.71 4.17
92 93 1.298667 CCTAAGTCCCGGTTGGTGG 59.701 63.158 0.00 0.00 34.77 4.61
93 94 1.376812 CTAAGTCCCGGTTGGTGGC 60.377 63.158 0.00 0.00 34.77 5.01
94 95 1.838073 CTAAGTCCCGGTTGGTGGCT 61.838 60.000 0.00 0.00 34.77 4.75
95 96 1.833787 TAAGTCCCGGTTGGTGGCTC 61.834 60.000 0.00 0.00 34.77 4.70
96 97 4.717313 GTCCCGGTTGGTGGCTCC 62.717 72.222 0.00 0.00 34.77 4.70
105 106 4.717313 GGTGGCTCCAACCCGGAC 62.717 72.222 0.73 0.00 39.64 4.79
106 107 3.637273 GTGGCTCCAACCCGGACT 61.637 66.667 0.73 0.00 39.64 3.85
107 108 2.120940 TGGCTCCAACCCGGACTA 59.879 61.111 0.73 0.00 39.64 2.59
108 109 1.536907 TGGCTCCAACCCGGACTAA 60.537 57.895 0.73 0.00 39.64 2.24
109 110 1.128809 TGGCTCCAACCCGGACTAAA 61.129 55.000 0.73 0.00 39.64 1.85
110 111 0.392595 GGCTCCAACCCGGACTAAAG 60.393 60.000 0.73 0.00 39.64 1.85
111 112 0.392595 GCTCCAACCCGGACTAAAGG 60.393 60.000 0.73 0.00 39.64 3.11
112 113 0.981943 CTCCAACCCGGACTAAAGGT 59.018 55.000 0.73 0.00 39.64 3.50
113 114 0.978907 TCCAACCCGGACTAAAGGTC 59.021 55.000 0.73 0.00 39.64 3.85
114 115 0.981943 CCAACCCGGACTAAAGGTCT 59.018 55.000 0.73 0.00 43.97 3.85
115 116 2.181975 CCAACCCGGACTAAAGGTCTA 58.818 52.381 0.73 0.00 43.97 2.59
116 117 2.568509 CCAACCCGGACTAAAGGTCTAA 59.431 50.000 0.73 0.00 43.97 2.10
117 118 3.593096 CAACCCGGACTAAAGGTCTAAC 58.407 50.000 0.73 0.00 43.97 2.34
118 119 2.182827 ACCCGGACTAAAGGTCTAACC 58.817 52.381 0.73 0.00 43.97 2.85
130 131 3.235750 GGTCTAACCTATAGTCCCGGT 57.764 52.381 0.00 0.00 34.73 5.28
131 132 3.570540 GGTCTAACCTATAGTCCCGGTT 58.429 50.000 0.00 0.00 43.10 4.44
132 133 3.963374 GGTCTAACCTATAGTCCCGGTTT 59.037 47.826 0.00 0.00 41.09 3.27
133 134 4.202192 GGTCTAACCTATAGTCCCGGTTTG 60.202 50.000 0.00 0.00 41.09 2.93
134 135 4.403752 GTCTAACCTATAGTCCCGGTTTGT 59.596 45.833 0.00 0.00 41.09 2.83
135 136 3.622166 AACCTATAGTCCCGGTTTGTG 57.378 47.619 0.00 0.00 37.76 3.33
136 137 2.543635 ACCTATAGTCCCGGTTTGTGT 58.456 47.619 0.00 0.00 0.00 3.72
137 138 2.498885 ACCTATAGTCCCGGTTTGTGTC 59.501 50.000 0.00 0.00 0.00 3.67
138 139 2.498481 CCTATAGTCCCGGTTTGTGTCA 59.502 50.000 0.00 0.00 0.00 3.58
139 140 3.134081 CCTATAGTCCCGGTTTGTGTCAT 59.866 47.826 0.00 0.00 0.00 3.06
140 141 4.342951 CCTATAGTCCCGGTTTGTGTCATA 59.657 45.833 0.00 0.00 0.00 2.15
141 142 4.829872 ATAGTCCCGGTTTGTGTCATAA 57.170 40.909 0.00 0.00 0.00 1.90
142 143 3.495434 AGTCCCGGTTTGTGTCATAAA 57.505 42.857 0.00 0.00 0.00 1.40
143 144 3.143728 AGTCCCGGTTTGTGTCATAAAC 58.856 45.455 14.87 14.87 37.31 2.01
148 149 2.506444 GGTTTGTGTCATAAACCGGGA 58.494 47.619 23.47 0.00 45.18 5.14
149 150 2.227149 GGTTTGTGTCATAAACCGGGAC 59.773 50.000 23.47 3.26 45.18 4.46
150 151 3.143728 GTTTGTGTCATAAACCGGGACT 58.856 45.455 12.78 0.00 33.12 3.85
151 152 4.317488 GTTTGTGTCATAAACCGGGACTA 58.683 43.478 12.78 0.00 33.12 2.59
152 153 4.620589 TTGTGTCATAAACCGGGACTAA 57.379 40.909 6.32 0.58 32.84 2.24
153 154 4.620589 TGTGTCATAAACCGGGACTAAA 57.379 40.909 6.32 0.00 32.84 1.85
154 155 4.571919 TGTGTCATAAACCGGGACTAAAG 58.428 43.478 6.32 0.00 32.84 1.85
155 156 3.937079 GTGTCATAAACCGGGACTAAAGG 59.063 47.826 6.32 0.00 32.84 3.11
156 157 3.054948 TGTCATAAACCGGGACTAAAGGG 60.055 47.826 6.32 0.00 32.84 3.95
157 158 2.506644 TCATAAACCGGGACTAAAGGGG 59.493 50.000 6.32 0.00 0.00 4.79
158 159 0.620030 TAAACCGGGACTAAAGGGGC 59.380 55.000 6.32 0.00 0.00 5.80
159 160 1.138228 AAACCGGGACTAAAGGGGCT 61.138 55.000 6.32 0.00 0.00 5.19
160 161 1.559965 AACCGGGACTAAAGGGGCTC 61.560 60.000 6.32 0.00 0.00 4.70
161 162 2.499685 CGGGACTAAAGGGGCTCG 59.500 66.667 0.00 0.00 0.00 5.03
162 163 2.356780 CGGGACTAAAGGGGCTCGT 61.357 63.158 0.00 0.00 0.00 4.18
163 164 1.221021 GGGACTAAAGGGGCTCGTG 59.779 63.158 0.00 0.00 0.00 4.35
164 165 1.221021 GGACTAAAGGGGCTCGTGG 59.779 63.158 0.00 0.00 0.00 4.94
165 166 1.221021 GACTAAAGGGGCTCGTGGG 59.779 63.158 0.00 0.00 0.00 4.61
166 167 2.253403 GACTAAAGGGGCTCGTGGGG 62.253 65.000 0.00 0.00 0.00 4.96
167 168 3.699134 CTAAAGGGGCTCGTGGGGC 62.699 68.421 0.00 0.00 0.00 5.80
190 191 4.007644 CCTGACGCCAGCCTGACA 62.008 66.667 0.00 0.00 39.07 3.58
191 192 2.433838 CTGACGCCAGCCTGACAG 60.434 66.667 0.00 0.00 33.07 3.51
192 193 4.687215 TGACGCCAGCCTGACAGC 62.687 66.667 0.00 0.00 0.00 4.40
193 194 4.687215 GACGCCAGCCTGACAGCA 62.687 66.667 0.00 0.00 34.23 4.41
194 195 4.996434 ACGCCAGCCTGACAGCAC 62.996 66.667 0.00 0.00 34.23 4.40
197 198 4.729918 CCAGCCTGACAGCACCCC 62.730 72.222 0.00 0.00 34.23 4.95
198 199 3.644606 CAGCCTGACAGCACCCCT 61.645 66.667 0.00 0.00 34.23 4.79
199 200 2.856000 AGCCTGACAGCACCCCTT 60.856 61.111 0.00 0.00 34.23 3.95
200 201 2.116125 GCCTGACAGCACCCCTTT 59.884 61.111 0.00 0.00 0.00 3.11
201 202 1.133809 AGCCTGACAGCACCCCTTTA 61.134 55.000 0.00 0.00 34.23 1.85
202 203 0.678048 GCCTGACAGCACCCCTTTAG 60.678 60.000 0.00 0.00 0.00 1.85
203 204 0.693049 CCTGACAGCACCCCTTTAGT 59.307 55.000 0.00 0.00 0.00 2.24
204 205 1.339151 CCTGACAGCACCCCTTTAGTC 60.339 57.143 0.00 0.00 0.00 2.59
205 206 0.690762 TGACAGCACCCCTTTAGTCC 59.309 55.000 0.00 0.00 0.00 3.85
206 207 0.035343 GACAGCACCCCTTTAGTCCC 60.035 60.000 0.00 0.00 0.00 4.46
207 208 1.078426 CAGCACCCCTTTAGTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
208 209 2.271173 GCACCCCTTTAGTCCCGG 59.729 66.667 0.00 0.00 0.00 5.73
209 210 2.599757 GCACCCCTTTAGTCCCGGT 61.600 63.158 0.00 0.00 0.00 5.28
210 211 2.072366 CACCCCTTTAGTCCCGGTT 58.928 57.895 0.00 0.00 0.00 4.44
211 212 0.402887 CACCCCTTTAGTCCCGGTTT 59.597 55.000 0.00 0.00 0.00 3.27
212 213 0.402887 ACCCCTTTAGTCCCGGTTTG 59.597 55.000 0.00 0.00 0.00 2.93
213 214 0.402887 CCCCTTTAGTCCCGGTTTGT 59.597 55.000 0.00 0.00 0.00 2.83
214 215 1.530323 CCCTTTAGTCCCGGTTTGTG 58.470 55.000 0.00 0.00 0.00 3.33
215 216 1.202842 CCCTTTAGTCCCGGTTTGTGT 60.203 52.381 0.00 0.00 0.00 3.72
216 217 2.148768 CCTTTAGTCCCGGTTTGTGTC 58.851 52.381 0.00 0.00 0.00 3.67
217 218 2.485835 CCTTTAGTCCCGGTTTGTGTCA 60.486 50.000 0.00 0.00 0.00 3.58
218 219 2.243602 TTAGTCCCGGTTTGTGTCAC 57.756 50.000 0.00 0.00 0.00 3.67
219 220 1.121378 TAGTCCCGGTTTGTGTCACA 58.879 50.000 0.18 0.18 0.00 3.58
220 221 0.253610 AGTCCCGGTTTGTGTCACAA 59.746 50.000 14.48 14.48 36.11 3.33
221 222 1.096416 GTCCCGGTTTGTGTCACAAA 58.904 50.000 24.05 24.05 44.91 2.83
229 230 3.428746 TTTGTGTCACAAATGAACCGG 57.571 42.857 24.05 0.00 42.55 5.28
230 231 1.313772 TGTGTCACAAATGAACCGGG 58.686 50.000 6.32 0.00 36.31 5.73
231 232 1.134068 TGTGTCACAAATGAACCGGGA 60.134 47.619 6.32 0.00 36.31 5.14
232 233 1.265905 GTGTCACAAATGAACCGGGAC 59.734 52.381 6.32 0.00 36.31 4.46
233 234 1.142060 TGTCACAAATGAACCGGGACT 59.858 47.619 6.32 0.00 36.31 3.85
234 235 2.369203 TGTCACAAATGAACCGGGACTA 59.631 45.455 6.32 0.00 36.31 2.59
235 236 3.181453 TGTCACAAATGAACCGGGACTAA 60.181 43.478 6.32 0.00 36.31 2.24
236 237 4.007659 GTCACAAATGAACCGGGACTAAT 58.992 43.478 6.32 0.00 36.31 1.73
237 238 4.006989 TCACAAATGAACCGGGACTAATG 58.993 43.478 6.32 0.14 0.00 1.90
238 239 2.752903 ACAAATGAACCGGGACTAATGC 59.247 45.455 6.32 0.00 0.00 3.56
239 240 1.663695 AATGAACCGGGACTAATGCG 58.336 50.000 6.32 0.00 0.00 4.73
240 241 0.539986 ATGAACCGGGACTAATGCGT 59.460 50.000 6.32 0.00 0.00 5.24
241 242 1.184431 TGAACCGGGACTAATGCGTA 58.816 50.000 6.32 0.00 0.00 4.42
242 243 1.135527 TGAACCGGGACTAATGCGTAG 59.864 52.381 6.32 0.00 35.75 3.51
256 257 2.159181 CGTAGCTGTTTGAACCGGG 58.841 57.895 6.32 0.00 0.00 5.73
257 258 0.320073 CGTAGCTGTTTGAACCGGGA 60.320 55.000 6.32 0.00 0.00 5.14
258 259 1.154197 GTAGCTGTTTGAACCGGGAC 58.846 55.000 6.32 0.00 0.00 4.46
259 260 1.053424 TAGCTGTTTGAACCGGGACT 58.947 50.000 6.32 0.00 0.00 3.85
260 261 1.053424 AGCTGTTTGAACCGGGACTA 58.947 50.000 6.32 0.00 0.00 2.59
261 262 1.418637 AGCTGTTTGAACCGGGACTAA 59.581 47.619 6.32 0.00 0.00 2.24
262 263 2.039879 AGCTGTTTGAACCGGGACTAAT 59.960 45.455 6.32 0.00 0.00 1.73
263 264 2.161609 GCTGTTTGAACCGGGACTAATG 59.838 50.000 6.32 1.99 0.00 1.90
264 265 2.747446 CTGTTTGAACCGGGACTAATGG 59.253 50.000 6.32 0.00 0.00 3.16
265 266 2.106857 TGTTTGAACCGGGACTAATGGT 59.893 45.455 6.32 0.00 37.68 3.55
266 267 3.327172 TGTTTGAACCGGGACTAATGGTA 59.673 43.478 6.32 0.00 34.11 3.25
267 268 3.615224 TTGAACCGGGACTAATGGTAC 57.385 47.619 6.32 0.00 34.11 3.34
268 269 1.832998 TGAACCGGGACTAATGGTACC 59.167 52.381 6.32 4.43 45.48 3.34
286 287 5.556006 GTACCATTAGTACCAGGCCATAA 57.444 43.478 5.01 0.00 44.85 1.90
287 288 6.123045 GTACCATTAGTACCAGGCCATAAT 57.877 41.667 5.01 0.00 44.85 1.28
288 289 5.663158 ACCATTAGTACCAGGCCATAATT 57.337 39.130 5.01 0.00 0.00 1.40
289 290 5.385198 ACCATTAGTACCAGGCCATAATTG 58.615 41.667 5.01 0.00 0.00 2.32
290 291 5.133660 ACCATTAGTACCAGGCCATAATTGA 59.866 40.000 5.01 0.00 0.00 2.57
291 292 6.068010 CCATTAGTACCAGGCCATAATTGAA 58.932 40.000 5.01 0.00 0.00 2.69
292 293 6.016276 CCATTAGTACCAGGCCATAATTGAAC 60.016 42.308 5.01 0.00 0.00 3.18
293 294 3.898482 AGTACCAGGCCATAATTGAACC 58.102 45.455 5.01 0.00 0.00 3.62
294 295 2.917713 ACCAGGCCATAATTGAACCA 57.082 45.000 5.01 0.00 0.00 3.67
295 296 2.738743 ACCAGGCCATAATTGAACCAG 58.261 47.619 5.01 0.00 0.00 4.00
296 297 2.034124 CCAGGCCATAATTGAACCAGG 58.966 52.381 5.01 0.00 0.00 4.45
297 298 2.358090 CCAGGCCATAATTGAACCAGGA 60.358 50.000 5.01 0.00 31.33 3.86
298 299 2.689983 CAGGCCATAATTGAACCAGGAC 59.310 50.000 5.01 0.00 0.00 3.85
299 300 2.582636 AGGCCATAATTGAACCAGGACT 59.417 45.455 5.01 0.00 0.00 3.85
300 301 3.785887 AGGCCATAATTGAACCAGGACTA 59.214 43.478 5.01 0.00 31.33 2.59
301 302 4.229582 AGGCCATAATTGAACCAGGACTAA 59.770 41.667 5.01 0.00 31.33 2.24
302 303 5.103515 AGGCCATAATTGAACCAGGACTAAT 60.104 40.000 5.01 0.00 31.33 1.73
303 304 5.010012 GGCCATAATTGAACCAGGACTAATG 59.990 44.000 0.00 0.00 0.00 1.90
304 305 5.827797 GCCATAATTGAACCAGGACTAATGA 59.172 40.000 0.00 0.00 0.00 2.57
305 306 6.016777 GCCATAATTGAACCAGGACTAATGAG 60.017 42.308 0.00 0.00 0.00 2.90
306 307 6.488006 CCATAATTGAACCAGGACTAATGAGG 59.512 42.308 0.00 0.00 0.00 3.86
307 308 5.520748 AATTGAACCAGGACTAATGAGGT 57.479 39.130 0.00 0.00 0.00 3.85
308 309 3.981071 TGAACCAGGACTAATGAGGTG 57.019 47.619 0.00 0.00 31.86 4.00
309 310 3.516586 TGAACCAGGACTAATGAGGTGA 58.483 45.455 0.00 0.00 31.86 4.02
310 311 3.907474 TGAACCAGGACTAATGAGGTGAA 59.093 43.478 0.00 0.00 31.86 3.18
311 312 4.536090 TGAACCAGGACTAATGAGGTGAAT 59.464 41.667 0.00 0.00 31.86 2.57
312 313 5.724370 TGAACCAGGACTAATGAGGTGAATA 59.276 40.000 0.00 0.00 31.86 1.75
313 314 6.386927 TGAACCAGGACTAATGAGGTGAATAT 59.613 38.462 0.00 0.00 31.86 1.28
314 315 6.831664 ACCAGGACTAATGAGGTGAATATT 57.168 37.500 0.00 0.00 0.00 1.28
315 316 7.931015 ACCAGGACTAATGAGGTGAATATTA 57.069 36.000 0.00 0.00 0.00 0.98
316 317 7.967908 ACCAGGACTAATGAGGTGAATATTAG 58.032 38.462 0.00 0.00 39.26 1.73
317 318 7.789831 ACCAGGACTAATGAGGTGAATATTAGA 59.210 37.037 9.46 0.00 37.66 2.10
318 319 8.820831 CCAGGACTAATGAGGTGAATATTAGAT 58.179 37.037 9.46 0.00 37.66 1.98
319 320 9.868277 CAGGACTAATGAGGTGAATATTAGATC 57.132 37.037 9.46 0.00 37.66 2.75
320 321 8.744652 AGGACTAATGAGGTGAATATTAGATCG 58.255 37.037 9.46 0.00 37.66 3.69
321 322 8.524487 GGACTAATGAGGTGAATATTAGATCGT 58.476 37.037 9.46 0.00 37.66 3.73
322 323 9.915629 GACTAATGAGGTGAATATTAGATCGTT 57.084 33.333 9.46 0.00 37.66 3.85
327 328 9.838339 ATGAGGTGAATATTAGATCGTTTTTCT 57.162 29.630 0.00 0.00 0.00 2.52
343 344 7.678226 TCGTTTTTCTACTAGTGTGTTGAAAC 58.322 34.615 5.39 8.14 39.77 2.78
460 463 4.121317 AGTTGCCATGTGTGACAAAAATG 58.879 39.130 0.00 0.00 29.25 2.32
466 469 7.436933 TGCCATGTGTGACAAAAATGTTATAA 58.563 30.769 0.00 0.00 0.00 0.98
508 511 3.901570 AGATCATCTCTAGCAGACCCT 57.098 47.619 0.00 0.00 32.26 4.34
525 528 4.069304 GACCCTTTAAAAATGCCAAACCC 58.931 43.478 0.00 0.00 0.00 4.11
528 531 3.496507 CCTTTAAAAATGCCAAACCCGTG 59.503 43.478 0.00 0.00 0.00 4.94
537 540 2.168521 TGCCAAACCCGTGAAATTTCAA 59.831 40.909 22.07 4.47 39.21 2.69
637 640 1.466167 CACCGAAAATGTGAGCCTCAG 59.534 52.381 0.00 0.00 35.74 3.35
672 676 3.523564 ACTGTTTGGAGGGCAGTATACAT 59.476 43.478 5.50 0.00 41.12 2.29
696 710 1.472480 ACAAATTGGCCGGAATTCTCG 59.528 47.619 5.05 7.32 0.00 4.04
764 801 1.389106 CGGCCTTCTCTTTACGTTTCG 59.611 52.381 0.00 0.00 0.00 3.46
812 849 0.608035 GCCCCGTCCAATTTCTCACA 60.608 55.000 0.00 0.00 0.00 3.58
836 1197 2.368685 CCGCGCGTTAATAAAATGTCC 58.631 47.619 29.95 0.00 0.00 4.02
837 1198 2.031191 CCGCGCGTTAATAAAATGTCCT 59.969 45.455 29.95 0.00 0.00 3.85
908 1377 3.801114 TCACATCCACATCCTTCGTAG 57.199 47.619 0.00 0.00 0.00 3.51
921 1390 3.576982 TCCTTCGTAGTCCAAGTGTGATT 59.423 43.478 0.00 0.00 0.00 2.57
933 1402 4.053295 CAAGTGTGATTTCCAAGCAAAGG 58.947 43.478 0.00 0.00 0.00 3.11
947 1417 6.714356 TCCAAGCAAAGGAAAATAAAAATGGG 59.286 34.615 0.00 0.00 30.71 4.00
953 1423 8.243426 GCAAAGGAAAATAAAAATGGGGAAATC 58.757 33.333 0.00 0.00 0.00 2.17
981 1451 0.109597 TCGCTTAAACCTCGTCCGTC 60.110 55.000 0.00 0.00 0.00 4.79
1283 1753 0.250295 CTCTTCCTCCGCAACAACCA 60.250 55.000 0.00 0.00 0.00 3.67
1383 1853 1.450312 CTGGAACACCCTCATCGCC 60.450 63.158 0.00 0.00 35.38 5.54
1592 2062 1.070786 TGTTCCTGACCAACTCCGC 59.929 57.895 0.00 0.00 0.00 5.54
1851 2321 3.612247 GAGGATGCTGCACGGGTGT 62.612 63.158 3.57 0.00 0.00 4.16
1998 2468 0.391793 TTTACGGTGCCATGATCGCA 60.392 50.000 0.00 0.00 0.00 5.10
2040 2510 1.208165 ACCCTTGCCCTGAGGTTAGG 61.208 60.000 0.00 0.66 36.26 2.69
2064 2534 3.223661 AGCTGTCAGGCTTTTCTCG 57.776 52.632 1.14 0.00 39.86 4.04
2067 2537 1.878102 GCTGTCAGGCTTTTCTCGGAA 60.878 52.381 1.14 0.00 0.00 4.30
2346 2816 2.780014 CGCGCATGATGAGAATTTTGAC 59.220 45.455 8.75 0.00 0.00 3.18
2423 2893 5.864474 AGTTCACTTTATCGAGTGTGATGAC 59.136 40.000 11.44 8.82 45.64 3.06
2649 3119 0.256752 CAGTCCATGGCCATGAAGGA 59.743 55.000 41.32 29.30 41.20 3.36
2778 3248 6.164176 CGAAGGTTTCAGGTACATACTCTTT 58.836 40.000 0.00 0.00 0.00 2.52
2802 3272 5.827797 TCAAAGTATAATGATTGACCTGCCC 59.172 40.000 0.00 0.00 0.00 5.36
2820 3290 2.857748 GCCCGTTTTGTTGTTTCTCAAG 59.142 45.455 0.00 0.00 36.66 3.02
2831 3301 4.637483 TGTTTCTCAAGAAGTGCTTTGG 57.363 40.909 0.00 0.00 33.60 3.28
2911 3382 9.305925 GCAATTTATGAGGACCTTTCTAATTTG 57.694 33.333 0.00 8.20 0.00 2.32
2919 3390 9.034800 TGAGGACCTTTCTAATTTGCATTAAAT 57.965 29.630 0.00 0.00 40.67 1.40
3095 3569 9.716507 CATGTTAAATTAGCTATTTACTTGCGT 57.283 29.630 0.00 0.00 38.19 5.24
3102 3576 4.069304 AGCTATTTACTTGCGTCAAACCA 58.931 39.130 0.00 0.00 0.00 3.67
3160 3634 3.444742 CCAGATTGGAAATGTAGCTTGCA 59.555 43.478 0.00 0.00 40.96 4.08
3234 3708 4.825445 AGGGACTGGTAAGATCATCAGAT 58.175 43.478 0.53 0.00 37.18 2.90
3305 3779 4.506802 GGAGGGTTCAAGTTTGACATACCT 60.507 45.833 11.82 8.84 36.38 3.08
3316 3790 5.531287 AGTTTGACATACCTTTCCTGAACAC 59.469 40.000 0.00 0.00 0.00 3.32
3326 3800 7.448748 ACCTTTCCTGAACACAATTATGTAC 57.551 36.000 0.00 0.00 37.82 2.90
3382 3856 8.732746 AAGAATGTGCTATAAAGGAACGTTAT 57.267 30.769 0.00 0.00 44.50 1.89
3426 3900 4.640771 TCTGGCACTTCTATCCAACTTT 57.359 40.909 0.00 0.00 0.00 2.66
3438 3912 8.870160 TTCTATCCAACTTTTCAACAATGTTG 57.130 30.769 19.23 19.23 38.08 3.33
3457 3931 9.850628 CAATGTTGACAATTCATCAAGTATCTT 57.149 29.630 2.52 0.00 36.76 2.40
3490 3964 1.880271 CAGGCACTATGAGAGCATGG 58.120 55.000 3.13 0.00 39.33 3.66
3510 3984 5.628797 TGGTATCAGATTATGGCTGTTCA 57.371 39.130 0.00 0.00 34.98 3.18
3657 4131 1.395635 GTGCATGCAGAATCCATGGA 58.604 50.000 23.41 18.88 40.24 3.41
3672 4146 2.377136 TGGAGACAAAGAGAGGGGC 58.623 57.895 0.00 0.00 37.44 5.80
3711 4185 3.713826 TTAATGGAACTCGAGCCCTTT 57.286 42.857 20.78 21.00 0.00 3.11
3756 4230 3.517500 TGTACAACCTCTACATGGATGCA 59.482 43.478 0.00 0.00 31.60 3.96
3792 4266 2.231529 GCTATGAAGACGAGAGGCCTA 58.768 52.381 4.42 0.00 43.69 3.93
3870 4344 6.566197 GGATCCATCCATCATTTTACTGAC 57.434 41.667 6.95 0.00 46.38 3.51
3901 4375 1.549620 CCTGCCCACACAATAATGCAA 59.450 47.619 0.00 0.00 0.00 4.08
3925 4399 4.832248 TCACGCCAGATTAGAAGAATTGT 58.168 39.130 0.00 0.00 0.00 2.71
4055 4529 2.113774 TGTGGCTCTTGGGCTGTG 59.886 61.111 0.00 0.00 41.48 3.66
4086 4560 1.273606 TCTGCTGCTCCTGTAACAGTC 59.726 52.381 0.00 0.00 33.87 3.51
4164 4638 4.141937 GCAAGGGAAAACAGGGGAATAATC 60.142 45.833 0.00 0.00 0.00 1.75
4282 4758 0.461961 CCTTAGAAGGGTCAGCGGAG 59.538 60.000 0.00 0.00 42.66 4.63
4283 4759 0.461961 CTTAGAAGGGTCAGCGGAGG 59.538 60.000 0.00 0.00 0.00 4.30
4285 4761 0.040646 TAGAAGGGTCAGCGGAGGAA 59.959 55.000 0.00 0.00 0.00 3.36
4286 4762 0.836400 AGAAGGGTCAGCGGAGGAAA 60.836 55.000 0.00 0.00 0.00 3.13
4287 4763 0.673956 GAAGGGTCAGCGGAGGAAAC 60.674 60.000 0.00 0.00 0.00 2.78
4289 4765 1.376037 GGGTCAGCGGAGGAAACTG 60.376 63.158 0.00 0.00 44.43 3.16
4290 4766 1.376037 GGTCAGCGGAGGAAACTGG 60.376 63.158 0.00 0.00 44.43 4.00
4291 4767 1.371558 GTCAGCGGAGGAAACTGGT 59.628 57.895 0.00 0.00 44.43 4.00
4292 4768 0.951040 GTCAGCGGAGGAAACTGGTG 60.951 60.000 0.00 0.00 44.43 4.17
4293 4769 1.071471 CAGCGGAGGAAACTGGTGT 59.929 57.895 0.00 0.00 44.43 4.16
4294 4770 0.320374 CAGCGGAGGAAACTGGTGTA 59.680 55.000 0.00 0.00 44.43 2.90
4295 4771 1.066143 CAGCGGAGGAAACTGGTGTAT 60.066 52.381 0.00 0.00 44.43 2.29
4296 4772 2.167693 CAGCGGAGGAAACTGGTGTATA 59.832 50.000 0.00 0.00 44.43 1.47
4297 4773 2.835764 AGCGGAGGAAACTGGTGTATAA 59.164 45.455 0.00 0.00 44.43 0.98
4298 4774 2.934553 GCGGAGGAAACTGGTGTATAAC 59.065 50.000 0.00 0.00 44.43 1.89
4313 4789 6.528321 GGTGTATAACCTTGGGAGTATAACC 58.472 44.000 0.00 0.00 46.55 2.85
4390 4866 7.147637 GGAGGAATGAGAGGATTACAGTAAAGT 60.148 40.741 0.00 0.00 0.00 2.66
4466 4942 4.033932 TGTGAACATGTAGCATACGATTGC 59.966 41.667 0.00 6.28 46.99 3.56
4611 5088 1.821753 TCTCAGCTAGAACTGTGGCTC 59.178 52.381 0.00 0.00 38.84 4.70
4621 5098 4.683832 AGAACTGTGGCTCAATCGTATAC 58.316 43.478 0.00 0.00 0.00 1.47
4636 5113 3.692101 TCGTATACACTTGGGGCATTTTG 59.308 43.478 3.32 0.00 0.00 2.44
4637 5114 3.442273 CGTATACACTTGGGGCATTTTGT 59.558 43.478 3.32 0.00 0.00 2.83
4638 5115 3.959535 ATACACTTGGGGCATTTTGTG 57.040 42.857 0.00 0.00 0.00 3.33
4720 5199 1.219124 CCCATCTGCAGCACGTACT 59.781 57.895 9.47 0.00 0.00 2.73
4839 5318 5.495926 ACACTCTCACCAAGATGAAAGAT 57.504 39.130 0.00 0.00 32.19 2.40
4841 5320 5.936956 ACACTCTCACCAAGATGAAAGATTC 59.063 40.000 0.00 0.00 32.19 2.52
4842 5321 5.063186 CACTCTCACCAAGATGAAAGATTCG 59.937 44.000 0.00 0.00 32.19 3.34
4843 5322 3.935203 TCTCACCAAGATGAAAGATTCGC 59.065 43.478 0.00 0.00 0.00 4.70
4845 5324 3.686241 TCACCAAGATGAAAGATTCGCTG 59.314 43.478 0.00 0.00 0.00 5.18
4960 5458 5.008118 GCTGTTGAGCTGAAATTATACCCTC 59.992 44.000 0.00 0.00 42.52 4.30
4972 5470 4.955811 TTATACCCTCGTGCTCAATCAT 57.044 40.909 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.985895 ACCTCCAACCCAGACTAAAGG 59.014 52.381 0.00 0.00 0.00 3.11
7 8 4.565028 GGTTACCTCCAACCCAGACTAAAG 60.565 50.000 0.00 0.00 41.89 1.85
8 9 3.328637 GGTTACCTCCAACCCAGACTAAA 59.671 47.826 0.00 0.00 41.89 1.85
9 10 2.908351 GGTTACCTCCAACCCAGACTAA 59.092 50.000 0.00 0.00 41.89 2.24
10 11 2.543635 GGTTACCTCCAACCCAGACTA 58.456 52.381 0.00 0.00 41.89 2.59
11 12 1.359168 GGTTACCTCCAACCCAGACT 58.641 55.000 0.00 0.00 41.89 3.24
12 13 3.950869 GGTTACCTCCAACCCAGAC 57.049 57.895 0.00 0.00 41.89 3.51
18 19 4.330250 GGGACTAAAAGGTTACCTCCAAC 58.670 47.826 3.62 0.00 30.89 3.77
19 20 3.008266 CGGGACTAAAAGGTTACCTCCAA 59.992 47.826 3.62 0.00 30.89 3.53
20 21 2.568509 CGGGACTAAAAGGTTACCTCCA 59.431 50.000 3.62 0.00 30.89 3.86
21 22 2.093288 CCGGGACTAAAAGGTTACCTCC 60.093 54.545 3.62 0.00 30.89 4.30
22 23 2.568956 ACCGGGACTAAAAGGTTACCTC 59.431 50.000 3.62 0.00 32.17 3.85
23 24 2.624495 ACCGGGACTAAAAGGTTACCT 58.376 47.619 6.32 0.00 32.17 3.08
24 25 3.076621 CAACCGGGACTAAAAGGTTACC 58.923 50.000 6.32 0.00 44.30 2.85
25 26 3.076621 CCAACCGGGACTAAAAGGTTAC 58.923 50.000 6.32 0.00 44.30 2.50
26 27 2.710471 ACCAACCGGGACTAAAAGGTTA 59.290 45.455 6.32 0.00 44.30 2.85
27 28 1.496001 ACCAACCGGGACTAAAAGGTT 59.504 47.619 6.32 0.00 46.76 3.50
28 29 1.142936 ACCAACCGGGACTAAAAGGT 58.857 50.000 6.32 0.00 41.15 3.50
29 30 2.938314 GCTACCAACCGGGACTAAAAGG 60.938 54.545 6.32 0.00 41.15 3.11
30 31 2.027469 AGCTACCAACCGGGACTAAAAG 60.027 50.000 6.32 0.00 41.15 2.27
31 32 1.980036 AGCTACCAACCGGGACTAAAA 59.020 47.619 6.32 0.00 41.15 1.52
32 33 1.551883 GAGCTACCAACCGGGACTAAA 59.448 52.381 6.32 0.00 41.15 1.85
33 34 1.188863 GAGCTACCAACCGGGACTAA 58.811 55.000 6.32 0.00 41.15 2.24
34 35 0.685458 GGAGCTACCAACCGGGACTA 60.685 60.000 6.32 0.00 41.15 2.59
35 36 1.988406 GGAGCTACCAACCGGGACT 60.988 63.158 6.32 0.00 41.15 3.85
36 37 2.288025 TGGAGCTACCAACCGGGAC 61.288 63.158 6.32 0.00 46.75 4.46
37 38 2.120940 TGGAGCTACCAACCGGGA 59.879 61.111 6.32 0.00 46.75 5.14
44 45 2.120940 TCCGGGTTGGAGCTACCA 59.879 61.111 0.00 3.82 43.74 3.25
52 53 3.545724 GACCTTTAGTCCGGGTTGG 57.454 57.895 0.00 0.00 39.84 3.77
67 68 1.857965 ACCGGGACTTAGGTTAGACC 58.142 55.000 6.32 0.00 37.49 3.85
73 74 1.486145 CCACCAACCGGGACTTAGGT 61.486 60.000 6.32 0.71 43.68 3.08
74 75 1.298667 CCACCAACCGGGACTTAGG 59.701 63.158 6.32 0.00 41.15 2.69
75 76 1.376812 GCCACCAACCGGGACTTAG 60.377 63.158 6.32 0.00 41.15 2.18
76 77 1.833787 GAGCCACCAACCGGGACTTA 61.834 60.000 6.32 0.00 41.15 2.24
77 78 3.175710 AGCCACCAACCGGGACTT 61.176 61.111 6.32 0.00 41.15 3.01
78 79 3.637273 GAGCCACCAACCGGGACT 61.637 66.667 6.32 0.00 41.15 3.85
79 80 4.717313 GGAGCCACCAACCGGGAC 62.717 72.222 6.32 0.00 41.15 4.46
95 96 3.545724 GACCTTTAGTCCGGGTTGG 57.454 57.895 0.00 0.00 39.84 3.77
110 111 3.235750 ACCGGGACTATAGGTTAGACC 57.764 52.381 6.32 0.00 38.99 3.85
111 112 4.403752 ACAAACCGGGACTATAGGTTAGAC 59.596 45.833 6.32 0.00 46.45 2.59
112 113 4.403432 CACAAACCGGGACTATAGGTTAGA 59.597 45.833 6.32 0.00 46.45 2.10
113 114 4.161001 ACACAAACCGGGACTATAGGTTAG 59.839 45.833 6.32 0.00 46.45 2.34
114 115 4.095946 ACACAAACCGGGACTATAGGTTA 58.904 43.478 6.32 0.00 46.45 2.85
116 117 2.498885 GACACAAACCGGGACTATAGGT 59.501 50.000 6.32 0.00 40.50 3.08
117 118 2.498481 TGACACAAACCGGGACTATAGG 59.502 50.000 6.32 0.00 0.00 2.57
118 119 3.880047 TGACACAAACCGGGACTATAG 57.120 47.619 6.32 0.00 0.00 1.31
119 120 5.936187 TTATGACACAAACCGGGACTATA 57.064 39.130 6.32 0.00 0.00 1.31
120 121 4.829872 TTATGACACAAACCGGGACTAT 57.170 40.909 6.32 0.00 0.00 2.12
121 122 4.317488 GTTTATGACACAAACCGGGACTA 58.683 43.478 6.32 0.00 31.13 2.59
122 123 3.143728 GTTTATGACACAAACCGGGACT 58.856 45.455 6.32 0.00 31.13 3.85
123 124 2.227149 GGTTTATGACACAAACCGGGAC 59.773 50.000 12.43 0.00 43.94 4.46
124 125 2.506444 GGTTTATGACACAAACCGGGA 58.494 47.619 12.43 0.00 43.94 5.14
129 130 3.143728 AGTCCCGGTTTATGACACAAAC 58.856 45.455 9.96 0.49 35.57 2.93
130 131 3.495434 AGTCCCGGTTTATGACACAAA 57.505 42.857 9.96 0.00 0.00 2.83
131 132 4.620589 TTAGTCCCGGTTTATGACACAA 57.379 40.909 9.96 1.87 0.00 3.33
132 133 4.563993 CCTTTAGTCCCGGTTTATGACACA 60.564 45.833 9.96 0.00 0.00 3.72
133 134 3.937079 CCTTTAGTCCCGGTTTATGACAC 59.063 47.826 9.96 0.00 0.00 3.67
134 135 3.054948 CCCTTTAGTCCCGGTTTATGACA 60.055 47.826 9.96 0.00 0.00 3.58
135 136 3.538591 CCCTTTAGTCCCGGTTTATGAC 58.461 50.000 0.00 0.00 0.00 3.06
136 137 2.506644 CCCCTTTAGTCCCGGTTTATGA 59.493 50.000 0.00 0.00 0.00 2.15
137 138 2.927028 CCCCTTTAGTCCCGGTTTATG 58.073 52.381 0.00 0.00 0.00 1.90
138 139 1.213678 GCCCCTTTAGTCCCGGTTTAT 59.786 52.381 0.00 0.00 0.00 1.40
139 140 0.620030 GCCCCTTTAGTCCCGGTTTA 59.380 55.000 0.00 0.00 0.00 2.01
140 141 1.138228 AGCCCCTTTAGTCCCGGTTT 61.138 55.000 0.00 0.00 0.00 3.27
141 142 1.540617 AGCCCCTTTAGTCCCGGTT 60.541 57.895 0.00 0.00 0.00 4.44
142 143 1.993948 GAGCCCCTTTAGTCCCGGT 60.994 63.158 0.00 0.00 0.00 5.28
143 144 2.908796 GAGCCCCTTTAGTCCCGG 59.091 66.667 0.00 0.00 0.00 5.73
144 145 2.356780 ACGAGCCCCTTTAGTCCCG 61.357 63.158 0.00 0.00 0.00 5.14
145 146 1.221021 CACGAGCCCCTTTAGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
146 147 1.221021 CCACGAGCCCCTTTAGTCC 59.779 63.158 0.00 0.00 0.00 3.85
147 148 1.221021 CCCACGAGCCCCTTTAGTC 59.779 63.158 0.00 0.00 0.00 2.59
148 149 2.298661 CCCCACGAGCCCCTTTAGT 61.299 63.158 0.00 0.00 0.00 2.24
149 150 2.590092 CCCCACGAGCCCCTTTAG 59.410 66.667 0.00 0.00 0.00 1.85
150 151 3.723922 GCCCCACGAGCCCCTTTA 61.724 66.667 0.00 0.00 0.00 1.85
173 174 3.947132 CTGTCAGGCTGGCGTCAGG 62.947 68.421 20.36 1.80 41.19 3.86
174 175 2.433838 CTGTCAGGCTGGCGTCAG 60.434 66.667 14.01 14.01 43.64 3.51
175 176 4.687215 GCTGTCAGGCTGGCGTCA 62.687 66.667 15.29 8.26 0.00 4.35
176 177 4.687215 TGCTGTCAGGCTGGCGTC 62.687 66.667 15.29 8.98 0.00 5.19
177 178 4.996434 GTGCTGTCAGGCTGGCGT 62.996 66.667 15.29 0.00 0.00 5.68
180 181 4.729918 GGGGTGCTGTCAGGCTGG 62.730 72.222 15.73 0.00 0.00 4.85
181 182 2.703675 AAAGGGGTGCTGTCAGGCTG 62.704 60.000 8.58 8.58 0.00 4.85
182 183 1.133809 TAAAGGGGTGCTGTCAGGCT 61.134 55.000 1.14 0.00 0.00 4.58
183 184 0.678048 CTAAAGGGGTGCTGTCAGGC 60.678 60.000 1.14 0.00 0.00 4.85
184 185 0.693049 ACTAAAGGGGTGCTGTCAGG 59.307 55.000 1.14 0.00 0.00 3.86
185 186 1.339151 GGACTAAAGGGGTGCTGTCAG 60.339 57.143 0.00 0.00 0.00 3.51
186 187 0.690762 GGACTAAAGGGGTGCTGTCA 59.309 55.000 0.00 0.00 0.00 3.58
187 188 0.035343 GGGACTAAAGGGGTGCTGTC 60.035 60.000 0.00 0.00 0.00 3.51
188 189 1.838073 CGGGACTAAAGGGGTGCTGT 61.838 60.000 0.00 0.00 0.00 4.40
189 190 1.078426 CGGGACTAAAGGGGTGCTG 60.078 63.158 0.00 0.00 0.00 4.41
190 191 2.298661 CCGGGACTAAAGGGGTGCT 61.299 63.158 0.00 0.00 0.00 4.40
191 192 2.133359 AACCGGGACTAAAGGGGTGC 62.133 60.000 6.32 0.00 0.00 5.01
192 193 0.402887 AAACCGGGACTAAAGGGGTG 59.597 55.000 6.32 0.00 0.00 4.61
193 194 0.402887 CAAACCGGGACTAAAGGGGT 59.597 55.000 6.32 0.00 0.00 4.95
194 195 0.402887 ACAAACCGGGACTAAAGGGG 59.597 55.000 6.32 0.00 0.00 4.79
195 196 1.202842 ACACAAACCGGGACTAAAGGG 60.203 52.381 6.32 0.00 0.00 3.95
196 197 2.148768 GACACAAACCGGGACTAAAGG 58.851 52.381 6.32 0.00 0.00 3.11
197 198 2.546789 GTGACACAAACCGGGACTAAAG 59.453 50.000 6.32 0.00 0.00 1.85
198 199 2.093075 TGTGACACAAACCGGGACTAAA 60.093 45.455 6.32 0.00 0.00 1.85
199 200 1.485480 TGTGACACAAACCGGGACTAA 59.515 47.619 6.32 0.00 0.00 2.24
200 201 1.121378 TGTGACACAAACCGGGACTA 58.879 50.000 6.32 0.00 0.00 2.59
201 202 0.253610 TTGTGACACAAACCGGGACT 59.746 50.000 18.56 0.00 34.76 3.85
202 203 1.096416 TTTGTGACACAAACCGGGAC 58.904 50.000 26.08 0.00 42.55 4.46
203 204 3.571748 TTTGTGACACAAACCGGGA 57.428 47.368 26.08 6.83 42.55 5.14
210 211 1.678627 CCCGGTTCATTTGTGACACAA 59.321 47.619 17.02 17.02 36.11 3.33
211 212 1.134068 TCCCGGTTCATTTGTGACACA 60.134 47.619 3.56 3.56 0.00 3.72
212 213 1.265905 GTCCCGGTTCATTTGTGACAC 59.734 52.381 0.00 0.00 0.00 3.67
213 214 1.142060 AGTCCCGGTTCATTTGTGACA 59.858 47.619 0.00 0.00 0.00 3.58
214 215 1.892209 AGTCCCGGTTCATTTGTGAC 58.108 50.000 0.00 0.00 0.00 3.67
215 216 3.773418 TTAGTCCCGGTTCATTTGTGA 57.227 42.857 0.00 0.00 0.00 3.58
216 217 3.427503 GCATTAGTCCCGGTTCATTTGTG 60.428 47.826 0.00 0.00 0.00 3.33
217 218 2.752903 GCATTAGTCCCGGTTCATTTGT 59.247 45.455 0.00 0.00 0.00 2.83
218 219 2.223249 CGCATTAGTCCCGGTTCATTTG 60.223 50.000 0.00 0.00 0.00 2.32
219 220 2.014128 CGCATTAGTCCCGGTTCATTT 58.986 47.619 0.00 0.00 0.00 2.32
220 221 1.065709 ACGCATTAGTCCCGGTTCATT 60.066 47.619 0.00 0.00 0.00 2.57
221 222 0.539986 ACGCATTAGTCCCGGTTCAT 59.460 50.000 0.00 0.00 0.00 2.57
222 223 1.135527 CTACGCATTAGTCCCGGTTCA 59.864 52.381 0.00 0.00 0.00 3.18
223 224 1.849097 CTACGCATTAGTCCCGGTTC 58.151 55.000 0.00 0.00 0.00 3.62
224 225 0.179092 GCTACGCATTAGTCCCGGTT 60.179 55.000 0.00 0.00 0.00 4.44
225 226 1.041447 AGCTACGCATTAGTCCCGGT 61.041 55.000 0.00 0.00 0.00 5.28
226 227 0.597637 CAGCTACGCATTAGTCCCGG 60.598 60.000 0.00 0.00 0.00 5.73
227 228 0.102481 ACAGCTACGCATTAGTCCCG 59.898 55.000 0.00 0.00 0.00 5.14
228 229 2.311124 AACAGCTACGCATTAGTCCC 57.689 50.000 0.00 0.00 0.00 4.46
229 230 3.259064 TCAAACAGCTACGCATTAGTCC 58.741 45.455 0.00 0.00 0.00 3.85
230 231 4.435651 GGTTCAAACAGCTACGCATTAGTC 60.436 45.833 0.00 0.00 0.00 2.59
231 232 3.435671 GGTTCAAACAGCTACGCATTAGT 59.564 43.478 0.00 0.00 0.00 2.24
232 233 3.483574 CGGTTCAAACAGCTACGCATTAG 60.484 47.826 0.00 0.00 0.00 1.73
233 234 2.413796 CGGTTCAAACAGCTACGCATTA 59.586 45.455 0.00 0.00 0.00 1.90
234 235 1.196808 CGGTTCAAACAGCTACGCATT 59.803 47.619 0.00 0.00 0.00 3.56
235 236 0.796312 CGGTTCAAACAGCTACGCAT 59.204 50.000 0.00 0.00 0.00 4.73
236 237 1.225376 CCGGTTCAAACAGCTACGCA 61.225 55.000 0.00 0.00 0.00 5.24
237 238 1.495951 CCGGTTCAAACAGCTACGC 59.504 57.895 0.00 0.00 0.00 4.42
238 239 0.320073 TCCCGGTTCAAACAGCTACG 60.320 55.000 0.00 0.00 0.00 3.51
239 240 1.154197 GTCCCGGTTCAAACAGCTAC 58.846 55.000 0.00 0.00 0.00 3.58
240 241 1.053424 AGTCCCGGTTCAAACAGCTA 58.947 50.000 0.00 0.00 0.00 3.32
241 242 1.053424 TAGTCCCGGTTCAAACAGCT 58.947 50.000 0.00 0.00 0.00 4.24
242 243 1.886886 TTAGTCCCGGTTCAAACAGC 58.113 50.000 0.00 0.00 0.00 4.40
243 244 2.747446 CCATTAGTCCCGGTTCAAACAG 59.253 50.000 0.00 0.00 0.00 3.16
244 245 2.106857 ACCATTAGTCCCGGTTCAAACA 59.893 45.455 0.00 0.00 0.00 2.83
245 246 2.786777 ACCATTAGTCCCGGTTCAAAC 58.213 47.619 0.00 0.00 0.00 2.93
246 247 3.307621 GGTACCATTAGTCCCGGTTCAAA 60.308 47.826 7.15 0.00 34.12 2.69
247 248 2.236893 GGTACCATTAGTCCCGGTTCAA 59.763 50.000 7.15 0.00 34.12 2.69
248 249 1.832998 GGTACCATTAGTCCCGGTTCA 59.167 52.381 7.15 0.00 34.12 3.18
249 250 1.832998 TGGTACCATTAGTCCCGGTTC 59.167 52.381 11.60 0.00 34.12 3.62
250 251 1.955451 TGGTACCATTAGTCCCGGTT 58.045 50.000 11.60 0.00 34.12 4.44
251 252 2.185663 ATGGTACCATTAGTCCCGGT 57.814 50.000 22.23 0.00 36.79 5.28
265 266 6.330514 TCAATTATGGCCTGGTACTAATGGTA 59.669 38.462 3.32 0.00 0.00 3.25
266 267 5.133660 TCAATTATGGCCTGGTACTAATGGT 59.866 40.000 3.32 0.00 0.00 3.55
267 268 5.630121 TCAATTATGGCCTGGTACTAATGG 58.370 41.667 3.32 0.00 0.00 3.16
268 269 6.016276 GGTTCAATTATGGCCTGGTACTAATG 60.016 42.308 3.32 0.00 0.00 1.90
269 270 6.068670 GGTTCAATTATGGCCTGGTACTAAT 58.931 40.000 3.32 0.00 0.00 1.73
270 271 5.044772 TGGTTCAATTATGGCCTGGTACTAA 60.045 40.000 3.32 0.00 0.00 2.24
271 272 4.475381 TGGTTCAATTATGGCCTGGTACTA 59.525 41.667 3.32 0.00 0.00 1.82
272 273 3.268334 TGGTTCAATTATGGCCTGGTACT 59.732 43.478 3.32 0.00 0.00 2.73
273 274 3.626930 TGGTTCAATTATGGCCTGGTAC 58.373 45.455 3.32 0.00 0.00 3.34
274 275 3.372566 CCTGGTTCAATTATGGCCTGGTA 60.373 47.826 3.32 0.00 36.88 3.25
275 276 2.624029 CCTGGTTCAATTATGGCCTGGT 60.624 50.000 3.32 0.00 36.88 4.00
276 277 2.034124 CCTGGTTCAATTATGGCCTGG 58.966 52.381 3.32 0.00 36.05 4.45
277 278 2.689983 GTCCTGGTTCAATTATGGCCTG 59.310 50.000 3.32 0.00 0.00 4.85
278 279 2.582636 AGTCCTGGTTCAATTATGGCCT 59.417 45.455 3.32 0.00 0.00 5.19
279 280 3.018423 AGTCCTGGTTCAATTATGGCC 57.982 47.619 0.00 0.00 0.00 5.36
280 281 5.827797 TCATTAGTCCTGGTTCAATTATGGC 59.172 40.000 0.00 0.00 0.00 4.40
281 282 6.488006 CCTCATTAGTCCTGGTTCAATTATGG 59.512 42.308 0.00 0.00 0.00 2.74
282 283 7.012704 CACCTCATTAGTCCTGGTTCAATTATG 59.987 40.741 0.00 0.00 0.00 1.90
283 284 7.056635 CACCTCATTAGTCCTGGTTCAATTAT 58.943 38.462 0.00 0.00 0.00 1.28
284 285 6.214615 TCACCTCATTAGTCCTGGTTCAATTA 59.785 38.462 0.00 0.00 0.00 1.40
285 286 5.014123 TCACCTCATTAGTCCTGGTTCAATT 59.986 40.000 0.00 0.00 0.00 2.32
286 287 4.536090 TCACCTCATTAGTCCTGGTTCAAT 59.464 41.667 0.00 0.00 0.00 2.57
287 288 3.907474 TCACCTCATTAGTCCTGGTTCAA 59.093 43.478 0.00 0.00 0.00 2.69
288 289 3.516586 TCACCTCATTAGTCCTGGTTCA 58.483 45.455 0.00 0.00 0.00 3.18
289 290 4.553330 TTCACCTCATTAGTCCTGGTTC 57.447 45.455 0.00 0.00 0.00 3.62
290 291 6.831664 ATATTCACCTCATTAGTCCTGGTT 57.168 37.500 0.00 0.00 0.00 3.67
291 292 6.831664 AATATTCACCTCATTAGTCCTGGT 57.168 37.500 0.00 0.00 0.00 4.00
292 293 8.195165 TCTAATATTCACCTCATTAGTCCTGG 57.805 38.462 0.00 0.00 34.99 4.45
293 294 9.868277 GATCTAATATTCACCTCATTAGTCCTG 57.132 37.037 0.00 0.00 34.99 3.86
294 295 8.744652 CGATCTAATATTCACCTCATTAGTCCT 58.255 37.037 0.00 0.00 34.99 3.85
295 296 8.524487 ACGATCTAATATTCACCTCATTAGTCC 58.476 37.037 0.00 0.00 34.99 3.85
296 297 9.915629 AACGATCTAATATTCACCTCATTAGTC 57.084 33.333 0.00 0.00 34.99 2.59
301 302 9.838339 AGAAAAACGATCTAATATTCACCTCAT 57.162 29.630 0.00 0.00 0.00 2.90
312 313 9.924650 AACACACTAGTAGAAAAACGATCTAAT 57.075 29.630 3.59 0.00 31.52 1.73
313 314 9.188588 CAACACACTAGTAGAAAAACGATCTAA 57.811 33.333 3.59 0.00 31.52 2.10
314 315 8.570488 TCAACACACTAGTAGAAAAACGATCTA 58.430 33.333 3.59 0.00 0.00 1.98
315 316 7.431249 TCAACACACTAGTAGAAAAACGATCT 58.569 34.615 3.59 0.00 0.00 2.75
316 317 7.633361 TCAACACACTAGTAGAAAAACGATC 57.367 36.000 3.59 0.00 0.00 3.69
317 318 8.333186 GTTTCAACACACTAGTAGAAAAACGAT 58.667 33.333 3.59 0.00 29.79 3.73
318 319 7.546667 AGTTTCAACACACTAGTAGAAAAACGA 59.453 33.333 3.59 0.00 29.79 3.85
319 320 7.681903 AGTTTCAACACACTAGTAGAAAAACG 58.318 34.615 3.59 0.00 29.79 3.60
320 321 8.662141 TGAGTTTCAACACACTAGTAGAAAAAC 58.338 33.333 3.59 2.79 29.79 2.43
321 322 8.780846 TGAGTTTCAACACACTAGTAGAAAAA 57.219 30.769 3.59 0.00 29.79 1.94
322 323 8.958119 ATGAGTTTCAACACACTAGTAGAAAA 57.042 30.769 3.59 0.00 32.49 2.29
323 324 9.692749 CTATGAGTTTCAACACACTAGTAGAAA 57.307 33.333 3.59 0.00 32.49 2.52
324 325 9.074576 TCTATGAGTTTCAACACACTAGTAGAA 57.925 33.333 3.59 0.00 32.49 2.10
325 326 8.631480 TCTATGAGTTTCAACACACTAGTAGA 57.369 34.615 3.59 0.00 32.49 2.59
326 327 8.731605 TCTCTATGAGTTTCAACACACTAGTAG 58.268 37.037 0.00 0.00 32.49 2.57
327 328 8.631480 TCTCTATGAGTTTCAACACACTAGTA 57.369 34.615 0.00 0.00 32.49 1.82
328 329 7.526142 TCTCTATGAGTTTCAACACACTAGT 57.474 36.000 0.00 0.00 32.49 2.57
329 330 7.009999 GCATCTCTATGAGTTTCAACACACTAG 59.990 40.741 0.00 0.00 34.84 2.57
330 331 6.813649 GCATCTCTATGAGTTTCAACACACTA 59.186 38.462 0.00 0.00 34.84 2.74
331 332 5.641209 GCATCTCTATGAGTTTCAACACACT 59.359 40.000 0.00 0.00 34.84 3.55
332 333 5.409520 TGCATCTCTATGAGTTTCAACACAC 59.590 40.000 0.00 0.00 34.84 3.82
333 334 5.550290 TGCATCTCTATGAGTTTCAACACA 58.450 37.500 0.00 0.00 34.84 3.72
334 335 6.674694 ATGCATCTCTATGAGTTTCAACAC 57.325 37.500 0.00 0.00 34.84 3.32
335 336 7.559486 AGTATGCATCTCTATGAGTTTCAACA 58.441 34.615 0.19 0.00 34.84 3.33
336 337 9.534565 TTAGTATGCATCTCTATGAGTTTCAAC 57.465 33.333 0.19 0.00 34.84 3.18
433 436 2.757314 TGTCACACATGGCAACTTTTGA 59.243 40.909 0.00 0.00 37.55 2.69
466 469 8.752005 ATCTAACTTATGTTACACATGGCAAT 57.248 30.769 0.00 0.00 39.53 3.56
491 494 6.620877 TTTTAAAGGGTCTGCTAGAGATGA 57.379 37.500 0.00 0.00 31.63 2.92
508 511 4.402056 TCACGGGTTTGGCATTTTTAAA 57.598 36.364 0.00 0.00 0.00 1.52
525 528 8.477984 AACCATAAATCCATTGAAATTTCACG 57.522 30.769 20.35 13.93 36.83 4.35
537 540 9.978336 AAAATTGATCCAAAACCATAAATCCAT 57.022 25.926 0.00 0.00 0.00 3.41
568 571 5.634020 CGAACTTTTACAGGGTCTGTTCTAG 59.366 44.000 5.86 4.28 42.59 2.43
637 640 7.606839 GCCCTCCAAACAGTATAAATATAGGTC 59.393 40.741 0.00 0.00 0.00 3.85
764 801 1.002624 TGGTTGGGATTGAGGCGAC 60.003 57.895 0.00 0.00 0.00 5.19
836 1197 1.135915 CCCCATCTCACTCACTCGAAG 59.864 57.143 0.00 0.00 0.00 3.79
837 1198 1.186200 CCCCATCTCACTCACTCGAA 58.814 55.000 0.00 0.00 0.00 3.71
908 1377 2.622942 TGCTTGGAAATCACACTTGGAC 59.377 45.455 0.00 0.00 0.00 4.02
921 1390 7.230309 CCCATTTTTATTTTCCTTTGCTTGGAA 59.770 33.333 2.38 2.38 41.33 3.53
944 1414 3.020984 GCGAGGTTTATTGATTTCCCCA 58.979 45.455 0.00 0.00 0.00 4.96
945 1415 3.288092 AGCGAGGTTTATTGATTTCCCC 58.712 45.455 0.00 0.00 0.00 4.81
947 1417 6.750501 GGTTTAAGCGAGGTTTATTGATTTCC 59.249 38.462 0.00 0.00 0.00 3.13
953 1423 4.390909 ACGAGGTTTAAGCGAGGTTTATTG 59.609 41.667 0.00 0.00 0.00 1.90
988 1458 2.278206 CAGCATCGGTCGTCGGAG 60.278 66.667 0.00 0.00 39.77 4.63
1226 1696 2.659063 CGGAGCATGTGGGAGTGGA 61.659 63.158 0.00 0.00 0.00 4.02
1848 2318 4.082136 TCCAAACCAACCTTAACAACACAC 60.082 41.667 0.00 0.00 0.00 3.82
1851 2321 4.345854 AGTCCAAACCAACCTTAACAACA 58.654 39.130 0.00 0.00 0.00 3.33
1854 2324 3.702045 CCAAGTCCAAACCAACCTTAACA 59.298 43.478 0.00 0.00 0.00 2.41
1914 2384 2.561419 CTCCTCAAGTCCACCGTTCTTA 59.439 50.000 0.00 0.00 0.00 2.10
1998 2468 0.682209 TACCTAAGCGAGCGAACCCT 60.682 55.000 0.00 0.00 0.00 4.34
2064 2534 1.103398 CACCCATCCGGAGCAATTCC 61.103 60.000 11.34 0.00 43.04 3.01
2067 2537 0.916086 TTACACCCATCCGGAGCAAT 59.084 50.000 11.34 0.00 34.64 3.56
2423 2893 1.742140 CTCAGAGCAGCACAGGCAG 60.742 63.158 0.00 0.00 44.61 4.85
2556 3026 3.434984 GCTCGAATGTCTTCTTTGAAGCT 59.565 43.478 2.71 0.00 0.00 3.74
2649 3119 0.396974 CCAGGAGCACTAGAGCCTCT 60.397 60.000 8.67 0.00 34.23 3.69
2778 3248 5.827797 GGGCAGGTCAATCATTATACTTTGA 59.172 40.000 0.00 0.00 0.00 2.69
2786 3256 2.799126 AACGGGCAGGTCAATCATTA 57.201 45.000 0.00 0.00 0.00 1.90
2787 3257 1.923356 AAACGGGCAGGTCAATCATT 58.077 45.000 0.00 0.00 0.00 2.57
2802 3272 5.220024 GCACTTCTTGAGAAACAACAAAACG 60.220 40.000 0.00 0.00 34.56 3.60
2820 3290 0.884514 GGAGGAAGCCAAAGCACTTC 59.115 55.000 0.00 0.00 43.56 3.01
2831 3301 5.966742 ACTAAAAATTCACAGGAGGAAGC 57.033 39.130 0.00 0.00 0.00 3.86
2889 3359 8.593945 ATGCAAATTAGAAAGGTCCTCATAAA 57.406 30.769 0.00 0.00 0.00 1.40
2911 3382 9.793252 ATGACTTGACTATTGAACATTTAATGC 57.207 29.630 4.68 0.00 0.00 3.56
2919 3390 8.147704 TGTGTAGAATGACTTGACTATTGAACA 58.852 33.333 0.00 0.00 0.00 3.18
2928 3399 8.764524 ATACTTTCTGTGTAGAATGACTTGAC 57.235 34.615 9.14 0.00 42.25 3.18
2933 3404 7.710907 TGGCATATACTTTCTGTGTAGAATGAC 59.289 37.037 9.14 0.00 42.25 3.06
2938 3409 7.015195 TGCTATGGCATATACTTTCTGTGTAGA 59.985 37.037 7.81 0.00 44.28 2.59
2971 3442 6.823689 ACAACACAATTCCCAGACTATCATAC 59.176 38.462 0.00 0.00 0.00 2.39
3102 3576 8.751215 TGATATCACAATATAGGTAACCCCTT 57.249 34.615 0.00 0.00 42.73 3.95
3210 3684 3.708631 CTGATGATCTTACCAGTCCCTGT 59.291 47.826 0.00 0.00 0.00 4.00
3234 3708 2.287909 GCATTGGCGGTGTTACTTCAAA 60.288 45.455 0.00 0.00 0.00 2.69
3305 3779 5.703592 AGCGTACATAATTGTGTTCAGGAAA 59.296 36.000 13.37 0.00 36.53 3.13
3316 3790 8.110612 CACTTTAGTTCTGAGCGTACATAATTG 58.889 37.037 0.00 0.00 0.00 2.32
3326 3800 5.276584 GCATCATACACTTTAGTTCTGAGCG 60.277 44.000 0.00 0.00 0.00 5.03
3382 3856 8.424918 CAGAAATAGAGGAGACTGCCTTATTTA 58.575 37.037 11.01 0.00 44.43 1.40
3388 3862 3.037549 CCAGAAATAGAGGAGACTGCCT 58.962 50.000 0.00 0.00 44.43 4.75
3426 3900 7.980662 ACTTGATGAATTGTCAACATTGTTGAA 59.019 29.630 28.73 17.60 36.54 2.69
3457 3931 4.935352 AGTGCCTGCATTACAAAAAGAA 57.065 36.364 0.00 0.00 0.00 2.52
3490 3964 5.368145 TGGTGAACAGCCATAATCTGATAC 58.632 41.667 1.63 0.00 35.61 2.24
3510 3984 3.282831 GCTTTGTGCTTCGTATTTGGT 57.717 42.857 0.00 0.00 38.95 3.67
3657 4131 4.657814 TTTTATGCCCCTCTCTTTGTCT 57.342 40.909 0.00 0.00 0.00 3.41
3672 4146 8.682710 TCCATTAATTTCTCTCCGGTTTTTATG 58.317 33.333 0.00 0.00 0.00 1.90
3711 4185 3.689161 GCACCACATATGAAGTAACAGCA 59.311 43.478 10.38 0.00 0.00 4.41
3756 4230 4.539726 TCATAGCCAATGAGATTTTGCCT 58.460 39.130 0.00 0.00 39.77 4.75
3792 4266 1.068895 CTCATGCCTCGCTCTCTCATT 59.931 52.381 0.00 0.00 0.00 2.57
3870 4344 1.339631 TGTGGGCAGGAGTTATTTCCG 60.340 52.381 0.00 0.00 42.29 4.30
3901 4375 5.882557 ACAATTCTTCTAATCTGGCGTGAAT 59.117 36.000 0.00 0.00 0.00 2.57
3925 4399 3.938963 GTCTTCTGTTTCACACTGACCAA 59.061 43.478 0.00 0.00 33.32 3.67
4086 4560 5.512749 CCAGGATATCCTCTGGTTCTTCATG 60.513 48.000 22.02 6.56 46.65 3.07
4290 4766 7.370905 AGGTTATACTCCCAAGGTTATACAC 57.629 40.000 0.00 0.00 0.00 2.90
4291 4767 7.147444 CCAAGGTTATACTCCCAAGGTTATACA 60.147 40.741 0.00 0.00 0.00 2.29
4292 4768 7.222161 CCAAGGTTATACTCCCAAGGTTATAC 58.778 42.308 0.00 0.00 0.00 1.47
4293 4769 6.183361 GCCAAGGTTATACTCCCAAGGTTATA 60.183 42.308 0.00 0.00 0.00 0.98
4294 4770 5.398695 GCCAAGGTTATACTCCCAAGGTTAT 60.399 44.000 0.00 0.00 0.00 1.89
4295 4771 4.080186 GCCAAGGTTATACTCCCAAGGTTA 60.080 45.833 0.00 0.00 0.00 2.85
4296 4772 3.308904 GCCAAGGTTATACTCCCAAGGTT 60.309 47.826 0.00 0.00 0.00 3.50
4297 4773 2.241430 GCCAAGGTTATACTCCCAAGGT 59.759 50.000 0.00 0.00 0.00 3.50
4298 4774 2.422945 GGCCAAGGTTATACTCCCAAGG 60.423 54.545 0.00 0.00 0.00 3.61
4299 4775 2.241176 TGGCCAAGGTTATACTCCCAAG 59.759 50.000 0.61 0.00 0.00 3.61
4300 4776 2.280103 TGGCCAAGGTTATACTCCCAA 58.720 47.619 0.61 0.00 0.00 4.12
4301 4777 1.974028 TGGCCAAGGTTATACTCCCA 58.026 50.000 0.61 0.00 0.00 4.37
4302 4778 3.138468 AGAATGGCCAAGGTTATACTCCC 59.862 47.826 10.96 0.00 0.00 4.30
4303 4779 4.439253 AGAATGGCCAAGGTTATACTCC 57.561 45.455 10.96 0.00 0.00 3.85
4304 4780 4.036852 GCAAGAATGGCCAAGGTTATACTC 59.963 45.833 10.96 0.00 0.00 2.59
4305 4781 3.954258 GCAAGAATGGCCAAGGTTATACT 59.046 43.478 10.96 0.00 0.00 2.12
4306 4782 3.699038 TGCAAGAATGGCCAAGGTTATAC 59.301 43.478 10.96 0.00 29.78 1.47
4307 4783 3.953612 CTGCAAGAATGGCCAAGGTTATA 59.046 43.478 10.96 0.00 29.78 0.98
4308 4784 2.762327 CTGCAAGAATGGCCAAGGTTAT 59.238 45.455 10.96 0.00 29.78 1.89
4309 4785 2.170166 CTGCAAGAATGGCCAAGGTTA 58.830 47.619 10.96 0.00 29.78 2.85
4310 4786 0.971386 CTGCAAGAATGGCCAAGGTT 59.029 50.000 10.96 0.00 29.78 3.50
4311 4787 1.538687 GCTGCAAGAATGGCCAAGGT 61.539 55.000 10.96 0.00 29.78 3.50
4312 4788 1.217244 GCTGCAAGAATGGCCAAGG 59.783 57.895 10.96 0.00 29.78 3.61
4313 4789 0.108804 CAGCTGCAAGAATGGCCAAG 60.109 55.000 10.96 0.61 29.78 3.61
4466 4942 1.667724 GGAGTTGGACATCATCAAGCG 59.332 52.381 0.00 0.00 0.00 4.68
4611 5088 2.912771 TGCCCCAAGTGTATACGATTG 58.087 47.619 11.17 11.17 0.00 2.67
4621 5098 0.035176 CCCACAAAATGCCCCAAGTG 59.965 55.000 0.00 0.00 0.00 3.16
4720 5199 3.751518 TCTACAGCAGTGTGACTACAGA 58.248 45.455 0.00 0.00 37.52 3.41
4795 5274 1.725931 GCACCTCATTCGTTTCGCAAG 60.726 52.381 0.00 0.00 0.00 4.01
4997 5495 5.346551 TGGATCTAAAACACGAATGTACACG 59.653 40.000 0.00 0.07 38.45 4.49
5097 5615 8.268605 AGTTCTGACCTAAGGAGATTATTTTCC 58.731 37.037 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.