Multiple sequence alignment - TraesCS5D01G522300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G522300 chr5D 100.000 3587 0 0 1 3587 542993495 542989909 0.000000e+00 6625
1 TraesCS5D01G522300 chr5D 95.455 220 9 1 3368 3587 217434269 217434487 2.050000e-92 350
2 TraesCS5D01G522300 chr5D 92.478 226 15 2 3362 3586 124544275 124544499 4.470000e-84 322
3 TraesCS5D01G522300 chr5B 92.303 1533 88 17 1847 3368 684448149 684446636 0.000000e+00 2150
4 TraesCS5D01G522300 chr5B 89.370 809 44 24 732 1526 684449324 684448544 0.000000e+00 979
5 TraesCS5D01G522300 chr5B 88.994 318 21 7 400 712 684450121 684449813 7.270000e-102 381
6 TraesCS5D01G522300 chr5B 89.170 277 23 7 1554 1828 684448405 684448134 4.440000e-89 339
7 TraesCS5D01G522300 chr5B 91.579 190 5 5 137 324 684450386 684450206 5.940000e-63 252
8 TraesCS5D01G522300 chr5B 94.872 117 5 1 12 127 684467727 684467611 7.910000e-42 182
9 TraesCS5D01G522300 chr5B 97.436 78 2 0 178 255 684467623 684467546 2.250000e-27 134
10 TraesCS5D01G522300 chr4A 94.095 1287 66 4 2086 3368 626168107 626169387 0.000000e+00 1947
11 TraesCS5D01G522300 chr4A 94.495 218 12 0 1015 1232 626164946 626165163 1.600000e-88 337
12 TraesCS5D01G522300 chr4A 87.500 280 22 11 1555 1828 626166393 626166665 9.670000e-81 311
13 TraesCS5D01G522300 chr4A 92.925 212 15 0 1315 1526 626165161 626165372 3.480000e-80 309
14 TraesCS5D01G522300 chr4A 90.148 203 20 0 3165 3367 500908773 500908975 7.640000e-67 265
15 TraesCS5D01G522300 chr4A 85.606 264 17 13 1847 2107 626166650 626166895 1.280000e-64 257
16 TraesCS5D01G522300 chr2D 83.044 519 67 16 1020 1526 340510883 340511392 5.460000e-123 451
17 TraesCS5D01G522300 chr2D 87.978 366 42 2 2218 2582 340512852 340513216 7.110000e-117 431
18 TraesCS5D01G522300 chr2D 80.692 549 74 25 991 1526 340270352 340270881 7.220000e-107 398
19 TraesCS5D01G522300 chr2B 88.828 367 38 3 2218 2582 406280736 406281101 7.060000e-122 448
20 TraesCS5D01G522300 chr2B 80.627 542 78 24 996 1526 406098739 406099264 9.330000e-106 394
21 TraesCS5D01G522300 chr2A 87.978 366 42 2 2218 2582 450995104 450994740 7.110000e-117 431
22 TraesCS5D01G522300 chr2A 82.136 515 76 11 1020 1526 450997205 450996699 9.200000e-116 427
23 TraesCS5D01G522300 chr2A 81.159 552 66 28 991 1526 451013658 451013129 3.330000e-110 409
24 TraesCS5D01G522300 chr3D 95.475 221 10 0 3367 3587 184565587 184565807 1.580000e-93 353
25 TraesCS5D01G522300 chr3D 95.455 220 9 1 3368 3587 109337835 109337617 2.050000e-92 350
26 TraesCS5D01G522300 chr3D 93.665 221 14 0 3367 3587 225822593 225822373 7.420000e-87 331
27 TraesCS5D01G522300 chr3A 95.455 220 10 0 3368 3587 661666236 661666455 5.700000e-93 351
28 TraesCS5D01G522300 chr3A 86.341 205 24 1 3164 3368 489500040 489499840 1.680000e-53 220
29 TraesCS5D01G522300 chr3A 85.784 204 25 1 3165 3368 295713867 295713668 2.810000e-51 213
30 TraesCS5D01G522300 chr5A 93.421 228 15 0 3360 3587 8498321 8498094 4.440000e-89 339
31 TraesCS5D01G522300 chr1A 92.174 230 17 1 3359 3587 391963014 391963243 1.240000e-84 324
32 TraesCS5D01G522300 chr1A 92.444 225 16 1 3363 3587 545327293 545327516 1.610000e-83 320
33 TraesCS5D01G522300 chr1A 91.739 230 16 3 3360 3587 548896167 548896395 2.080000e-82 316
34 TraesCS5D01G522300 chr7A 92.444 225 17 0 3363 3587 167247408 167247184 4.470000e-84 322
35 TraesCS5D01G522300 chr7A 88.235 204 24 0 3165 3368 2235714 2235917 9.950000e-61 244
36 TraesCS5D01G522300 chr1D 92.444 225 15 2 3363 3587 141178733 141178511 1.610000e-83 320
37 TraesCS5D01G522300 chr1D 85.714 203 25 1 3166 3368 74267510 74267312 1.010000e-50 211
38 TraesCS5D01G522300 chr4D 86.829 205 27 0 3164 3368 27369183 27369387 2.790000e-56 230
39 TraesCS5D01G522300 chr3B 86.294 197 27 0 3165 3361 638308796 638308600 7.800000e-52 215
40 TraesCS5D01G522300 chr6D 85.294 204 26 1 3165 3368 321734930 321735129 1.310000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G522300 chr5D 542989909 542993495 3586 True 6625.0 6625 100.0000 1 3587 1 chr5D.!!$R1 3586
1 TraesCS5D01G522300 chr5B 684446636 684450386 3750 True 820.2 2150 90.2832 137 3368 5 chr5B.!!$R1 3231
2 TraesCS5D01G522300 chr4A 626164946 626169387 4441 False 632.2 1947 90.9242 1015 3368 5 chr4A.!!$F2 2353
3 TraesCS5D01G522300 chr2D 340510883 340513216 2333 False 441.0 451 85.5110 1020 2582 2 chr2D.!!$F2 1562
4 TraesCS5D01G522300 chr2D 340270352 340270881 529 False 398.0 398 80.6920 991 1526 1 chr2D.!!$F1 535
5 TraesCS5D01G522300 chr2B 406098739 406099264 525 False 394.0 394 80.6270 996 1526 1 chr2B.!!$F1 530
6 TraesCS5D01G522300 chr2A 450994740 450997205 2465 True 429.0 431 85.0570 1020 2582 2 chr2A.!!$R2 1562
7 TraesCS5D01G522300 chr2A 451013129 451013658 529 True 409.0 409 81.1590 991 1526 1 chr2A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 1360 0.034767 TGCAGCAAGGCTCTTAGCAT 60.035 50.0 0.0 0.00 44.75 3.79 F
978 1493 0.317938 CCAAGCTAGCTAGGCGTACG 60.318 60.0 19.7 11.84 34.52 3.67 F
980 1495 0.381089 AAGCTAGCTAGGCGTACGTG 59.619 55.0 19.7 6.27 34.52 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4369 0.109272 TGCGGAAGTCGTCATCTGAC 60.109 55.0 0.07 0.07 41.72 3.51 R
2317 6014 0.249447 GGTGTGCACCCTTTTCTTGC 60.249 55.0 15.69 0.00 45.68 4.01 R
2683 6380 1.252904 GGACACACATGCCATTGCCT 61.253 55.0 0.00 0.00 36.33 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.787394 TCCCTTCCGACGAGCTTT 58.213 55.556 0.00 0.00 0.00 3.51
18 19 1.590147 TCCCTTCCGACGAGCTTTC 59.410 57.895 0.00 0.00 0.00 2.62
19 20 1.448013 CCCTTCCGACGAGCTTTCC 60.448 63.158 0.00 0.00 0.00 3.13
20 21 1.292223 CCTTCCGACGAGCTTTCCA 59.708 57.895 0.00 0.00 0.00 3.53
21 22 0.320421 CCTTCCGACGAGCTTTCCAA 60.320 55.000 0.00 0.00 0.00 3.53
22 23 1.071605 CTTCCGACGAGCTTTCCAAG 58.928 55.000 0.00 0.00 0.00 3.61
23 24 0.320421 TTCCGACGAGCTTTCCAAGG 60.320 55.000 0.00 0.00 0.00 3.61
24 25 2.391389 CCGACGAGCTTTCCAAGGC 61.391 63.158 0.00 0.00 0.00 4.35
25 26 1.667830 CGACGAGCTTTCCAAGGCA 60.668 57.895 0.00 0.00 0.00 4.75
26 27 1.021390 CGACGAGCTTTCCAAGGCAT 61.021 55.000 0.00 0.00 0.00 4.40
27 28 0.449388 GACGAGCTTTCCAAGGCATG 59.551 55.000 0.00 0.00 0.00 4.06
28 29 0.250901 ACGAGCTTTCCAAGGCATGT 60.251 50.000 0.00 0.00 0.00 3.21
29 30 0.883833 CGAGCTTTCCAAGGCATGTT 59.116 50.000 0.00 0.00 0.00 2.71
30 31 1.401931 CGAGCTTTCCAAGGCATGTTG 60.402 52.381 0.00 0.00 0.00 3.33
31 32 1.615392 GAGCTTTCCAAGGCATGTTGT 59.385 47.619 0.00 0.00 0.00 3.32
32 33 2.036346 GAGCTTTCCAAGGCATGTTGTT 59.964 45.455 0.00 0.00 0.00 2.83
33 34 2.036346 AGCTTTCCAAGGCATGTTGTTC 59.964 45.455 0.00 0.00 0.00 3.18
34 35 2.664916 CTTTCCAAGGCATGTTGTTCG 58.335 47.619 0.00 0.00 0.00 3.95
35 36 0.313672 TTCCAAGGCATGTTGTTCGC 59.686 50.000 0.00 0.00 0.00 4.70
36 37 1.080569 CCAAGGCATGTTGTTCGCC 60.081 57.895 0.00 0.00 46.62 5.54
39 40 4.776647 GGCATGTTGTTCGCCCGC 62.777 66.667 0.00 0.00 40.07 6.13
40 41 4.776647 GCATGTTGTTCGCCCGCC 62.777 66.667 0.00 0.00 0.00 6.13
41 42 4.459331 CATGTTGTTCGCCCGCCG 62.459 66.667 0.00 0.00 38.61 6.46
42 43 4.690719 ATGTTGTTCGCCCGCCGA 62.691 61.111 0.00 0.00 45.77 5.54
54 55 3.726517 CGCCGAGTGTTTGCCCAG 61.727 66.667 0.00 0.00 0.00 4.45
55 56 3.365265 GCCGAGTGTTTGCCCAGG 61.365 66.667 0.00 0.00 0.00 4.45
56 57 2.672996 CCGAGTGTTTGCCCAGGG 60.673 66.667 0.00 0.00 0.00 4.45
57 58 2.113139 CGAGTGTTTGCCCAGGGT 59.887 61.111 7.55 0.00 0.00 4.34
58 59 1.966451 CGAGTGTTTGCCCAGGGTC 60.966 63.158 7.55 0.00 0.00 4.46
59 60 1.966451 GAGTGTTTGCCCAGGGTCG 60.966 63.158 7.55 0.00 0.00 4.79
60 61 2.112297 GTGTTTGCCCAGGGTCGA 59.888 61.111 7.55 0.00 0.00 4.20
61 62 1.527380 GTGTTTGCCCAGGGTCGAA 60.527 57.895 7.55 2.86 0.00 3.71
62 63 1.104577 GTGTTTGCCCAGGGTCGAAA 61.105 55.000 7.55 1.27 0.00 3.46
63 64 1.104577 TGTTTGCCCAGGGTCGAAAC 61.105 55.000 7.55 13.92 0.00 2.78
64 65 1.529713 TTTGCCCAGGGTCGAAACC 60.530 57.895 7.55 0.00 45.65 3.27
65 66 2.002018 TTTGCCCAGGGTCGAAACCT 62.002 55.000 7.55 4.16 45.66 3.50
66 67 2.046217 GCCCAGGGTCGAAACCTC 60.046 66.667 7.55 0.00 45.66 3.85
67 68 2.669240 CCCAGGGTCGAAACCTCC 59.331 66.667 6.94 0.00 45.66 4.30
68 69 1.918800 CCCAGGGTCGAAACCTCCT 60.919 63.158 6.94 0.00 45.66 3.69
69 70 1.597461 CCAGGGTCGAAACCTCCTC 59.403 63.158 6.94 0.00 45.66 3.71
70 71 1.597461 CAGGGTCGAAACCTCCTCC 59.403 63.158 6.94 0.00 45.66 4.30
71 72 0.905337 CAGGGTCGAAACCTCCTCCT 60.905 60.000 6.94 0.00 45.66 3.69
72 73 0.615261 AGGGTCGAAACCTCCTCCTC 60.615 60.000 4.16 0.00 45.66 3.71
73 74 1.615165 GGGTCGAAACCTCCTCCTCC 61.615 65.000 0.32 0.00 45.66 4.30
74 75 0.903454 GGTCGAAACCTCCTCCTCCA 60.903 60.000 0.00 0.00 42.80 3.86
75 76 0.974383 GTCGAAACCTCCTCCTCCAA 59.026 55.000 0.00 0.00 0.00 3.53
76 77 0.974383 TCGAAACCTCCTCCTCCAAC 59.026 55.000 0.00 0.00 0.00 3.77
77 78 0.685097 CGAAACCTCCTCCTCCAACA 59.315 55.000 0.00 0.00 0.00 3.33
78 79 1.279271 CGAAACCTCCTCCTCCAACAT 59.721 52.381 0.00 0.00 0.00 2.71
79 80 2.678190 CGAAACCTCCTCCTCCAACATC 60.678 54.545 0.00 0.00 0.00 3.06
80 81 2.350863 AACCTCCTCCTCCAACATCT 57.649 50.000 0.00 0.00 0.00 2.90
81 82 1.577736 ACCTCCTCCTCCAACATCTG 58.422 55.000 0.00 0.00 0.00 2.90
82 83 1.203364 ACCTCCTCCTCCAACATCTGT 60.203 52.381 0.00 0.00 0.00 3.41
83 84 1.209019 CCTCCTCCTCCAACATCTGTG 59.791 57.143 0.00 0.00 0.00 3.66
84 85 1.905215 CTCCTCCTCCAACATCTGTGT 59.095 52.381 0.00 0.00 41.28 3.72
85 86 1.625315 TCCTCCTCCAACATCTGTGTG 59.375 52.381 0.00 0.00 38.92 3.82
86 87 1.349026 CCTCCTCCAACATCTGTGTGT 59.651 52.381 0.00 0.00 38.92 3.72
87 88 2.613977 CCTCCTCCAACATCTGTGTGTC 60.614 54.545 0.00 0.00 38.92 3.67
88 89 2.301296 CTCCTCCAACATCTGTGTGTCT 59.699 50.000 0.00 0.00 38.92 3.41
89 90 3.506398 TCCTCCAACATCTGTGTGTCTA 58.494 45.455 0.00 0.00 38.92 2.59
90 91 4.096681 TCCTCCAACATCTGTGTGTCTAT 58.903 43.478 0.00 0.00 38.92 1.98
91 92 4.160439 TCCTCCAACATCTGTGTGTCTATC 59.840 45.833 0.00 0.00 38.92 2.08
92 93 4.108336 CTCCAACATCTGTGTGTCTATCG 58.892 47.826 0.00 0.00 38.92 2.92
93 94 2.604914 CCAACATCTGTGTGTCTATCGC 59.395 50.000 0.00 0.00 38.92 4.58
94 95 2.586258 ACATCTGTGTGTCTATCGCC 57.414 50.000 0.00 0.00 37.14 5.54
95 96 1.137086 ACATCTGTGTGTCTATCGCCC 59.863 52.381 0.00 0.00 37.14 6.13
96 97 0.385751 ATCTGTGTGTCTATCGCCCG 59.614 55.000 0.00 0.00 0.00 6.13
97 98 1.878522 CTGTGTGTCTATCGCCCGC 60.879 63.158 0.00 0.00 0.00 6.13
98 99 2.954868 GTGTGTCTATCGCCCGCG 60.955 66.667 0.00 0.00 41.35 6.46
99 100 4.201679 TGTGTCTATCGCCCGCGG 62.202 66.667 21.04 21.04 40.25 6.46
100 101 3.896133 GTGTCTATCGCCCGCGGA 61.896 66.667 30.73 7.23 40.25 5.54
101 102 3.592814 TGTCTATCGCCCGCGGAG 61.593 66.667 30.73 20.70 40.25 4.63
114 115 2.435586 CGGAGCAGAGCCCAGTTG 60.436 66.667 0.00 0.00 0.00 3.16
115 116 2.045536 GGAGCAGAGCCCAGTTGG 60.046 66.667 0.00 0.00 37.09 3.77
124 125 2.644992 CCCAGTTGGCAAAGCGAC 59.355 61.111 0.00 0.00 0.00 5.19
125 126 2.192861 CCCAGTTGGCAAAGCGACA 61.193 57.895 0.00 0.00 0.00 4.35
126 127 1.008538 CCAGTTGGCAAAGCGACAC 60.009 57.895 0.00 0.00 0.00 3.67
127 128 1.447317 CCAGTTGGCAAAGCGACACT 61.447 55.000 0.00 0.00 0.00 3.55
128 129 1.225855 CAGTTGGCAAAGCGACACTA 58.774 50.000 0.00 0.00 0.00 2.74
129 130 1.195448 CAGTTGGCAAAGCGACACTAG 59.805 52.381 0.00 0.00 0.00 2.57
130 131 1.202651 AGTTGGCAAAGCGACACTAGT 60.203 47.619 0.00 0.00 0.00 2.57
131 132 1.069906 GTTGGCAAAGCGACACTAGTG 60.070 52.381 21.44 21.44 0.00 2.74
132 133 1.227999 TGGCAAAGCGACACTAGTGC 61.228 55.000 22.90 14.03 38.33 4.40
133 134 1.227999 GGCAAAGCGACACTAGTGCA 61.228 55.000 22.90 0.00 39.97 4.57
134 135 0.164647 GCAAAGCGACACTAGTGCAG 59.835 55.000 22.90 16.98 38.71 4.41
135 136 1.502231 CAAAGCGACACTAGTGCAGT 58.498 50.000 22.90 3.19 38.32 4.40
211 213 1.146041 GCCTGGCGATGGTGTATGA 59.854 57.895 1.35 0.00 0.00 2.15
212 214 0.250467 GCCTGGCGATGGTGTATGAT 60.250 55.000 1.35 0.00 0.00 2.45
213 215 1.001974 GCCTGGCGATGGTGTATGATA 59.998 52.381 1.35 0.00 0.00 2.15
216 218 1.623311 TGGCGATGGTGTATGATAGGG 59.377 52.381 0.00 0.00 0.00 3.53
224 226 2.371841 GGTGTATGATAGGGGTGCATCA 59.628 50.000 0.00 0.00 35.72 3.07
328 330 3.842069 GGTCAGGACCCAAGGTTTT 57.158 52.632 7.24 0.00 45.68 2.43
329 331 2.082140 GGTCAGGACCCAAGGTTTTT 57.918 50.000 7.24 0.00 45.68 1.94
330 332 1.686587 GGTCAGGACCCAAGGTTTTTG 59.313 52.381 7.24 0.00 45.68 2.44
331 333 1.068588 GTCAGGACCCAAGGTTTTTGC 59.931 52.381 0.00 0.00 35.25 3.68
332 334 0.392706 CAGGACCCAAGGTTTTTGCC 59.607 55.000 0.00 0.00 35.25 4.52
333 335 0.762842 AGGACCCAAGGTTTTTGCCC 60.763 55.000 0.00 0.00 35.25 5.36
334 336 1.752198 GACCCAAGGTTTTTGCCCC 59.248 57.895 0.00 0.00 35.25 5.80
335 337 1.764571 GACCCAAGGTTTTTGCCCCC 61.765 60.000 0.00 0.00 35.25 5.40
336 338 2.740438 CCAAGGTTTTTGCCCCCG 59.260 61.111 0.00 0.00 0.00 5.73
337 339 2.030412 CAAGGTTTTTGCCCCCGC 59.970 61.111 0.00 0.00 0.00 6.13
338 340 2.123033 AAGGTTTTTGCCCCCGCT 60.123 55.556 0.00 0.00 35.36 5.52
355 357 1.569479 GCTCCAAGCAACGTGAGACC 61.569 60.000 2.75 0.00 41.89 3.85
391 400 2.325082 CGGGTTCTTGGAAGCACCG 61.325 63.158 10.80 7.42 42.33 4.94
404 435 2.690778 GCACCGACAGCCATTGACC 61.691 63.158 0.00 0.00 0.00 4.02
407 438 0.110486 ACCGACAGCCATTGACCTTT 59.890 50.000 0.00 0.00 0.00 3.11
438 469 4.265056 GTCCACAGCCGGGTTGGT 62.265 66.667 24.56 11.71 41.21 3.67
439 470 3.494254 TCCACAGCCGGGTTGGTT 61.494 61.111 24.56 2.18 41.21 3.67
454 485 0.461870 TGGTTTGCCGATCTGATCCG 60.462 55.000 11.84 6.83 37.67 4.18
480 511 4.641645 TCTTGTGCTGGCCCGGTG 62.642 66.667 0.00 0.00 0.00 4.94
481 512 4.954970 CTTGTGCTGGCCCGGTGT 62.955 66.667 0.00 0.00 0.00 4.16
505 536 3.766545 TGGTCTTCTCCCTTCCAATTTG 58.233 45.455 0.00 0.00 0.00 2.32
534 565 6.250344 ACTTTACGGTTCTAAAAATGGAGC 57.750 37.500 0.00 0.00 0.00 4.70
560 591 7.630242 AGTTATTATTGTTGGACTGGTCATG 57.370 36.000 3.10 0.00 0.00 3.07
569 604 2.969238 CTGGTCATGGGCGATCGC 60.969 66.667 31.52 31.52 41.06 4.58
578 613 2.434185 GGCGATCGCTGTCACCAA 60.434 61.111 36.25 0.00 41.60 3.67
592 627 3.118454 CCAAGGCAGGTGCGTACG 61.118 66.667 11.84 11.84 43.26 3.67
605 640 3.110178 GTACGTGGTCACCGCAGC 61.110 66.667 8.45 0.00 32.88 5.25
620 655 4.572389 CACCGCAGCTTATCTAATGAAGTT 59.428 41.667 0.00 0.00 0.00 2.66
625 660 8.436200 CCGCAGCTTATCTAATGAAGTTATTAC 58.564 37.037 0.00 0.00 0.00 1.89
650 685 2.358615 TGTGTGCCGACATCCAGC 60.359 61.111 0.00 0.00 33.63 4.85
688 723 2.669133 CCGATGAGGGAGGTGCCAA 61.669 63.158 0.00 0.00 38.95 4.52
690 725 1.617018 CGATGAGGGAGGTGCCAAGA 61.617 60.000 0.00 0.00 38.95 3.02
703 738 2.026822 GTGCCAAGAGGAAAGATCTCCA 60.027 50.000 0.00 0.00 38.02 3.86
707 742 5.846164 TGCCAAGAGGAAAGATCTCCATATA 59.154 40.000 0.00 0.00 38.02 0.86
708 743 6.503217 TGCCAAGAGGAAAGATCTCCATATAT 59.497 38.462 0.00 0.00 38.02 0.86
740 1245 9.512435 TCTTTTCTATTCTATACGTAGCAACAC 57.488 33.333 0.08 0.00 0.00 3.32
746 1251 1.286501 ATACGTAGCAACACGCCATG 58.713 50.000 0.08 0.00 45.77 3.66
762 1267 0.879400 CATGCTCTGTCTGCCGGATC 60.879 60.000 5.05 0.00 0.00 3.36
763 1268 1.047596 ATGCTCTGTCTGCCGGATCT 61.048 55.000 5.05 0.00 0.00 2.75
764 1269 1.067250 GCTCTGTCTGCCGGATCTC 59.933 63.158 5.05 0.00 0.00 2.75
765 1270 1.739049 CTCTGTCTGCCGGATCTCC 59.261 63.158 5.05 0.00 0.00 3.71
766 1271 1.000359 TCTGTCTGCCGGATCTCCA 60.000 57.895 5.05 0.00 35.14 3.86
786 1291 2.129823 TGGTCGTCGTGAAAAGTCTC 57.870 50.000 0.00 0.00 0.00 3.36
807 1312 2.239400 CGGGGAAGAAAAGGAAAGCTT 58.761 47.619 0.00 0.00 0.00 3.74
809 1314 3.501349 GGGGAAGAAAAGGAAAGCTTCT 58.499 45.455 0.00 0.00 37.49 2.85
810 1315 3.508012 GGGGAAGAAAAGGAAAGCTTCTC 59.492 47.826 0.00 0.00 37.18 2.87
811 1316 3.189495 GGGAAGAAAAGGAAAGCTTCTCG 59.811 47.826 0.00 0.00 37.49 4.04
812 1317 4.065789 GGAAGAAAAGGAAAGCTTCTCGA 58.934 43.478 0.00 0.00 37.49 4.04
822 1327 4.497674 GGAAAGCTTCTCGATCGTTAGCTA 60.498 45.833 27.96 6.75 41.05 3.32
851 1356 0.036010 GACCTGCAGCAAGGCTCTTA 60.036 55.000 8.66 0.00 41.46 2.10
852 1357 0.035630 ACCTGCAGCAAGGCTCTTAG 60.036 55.000 8.66 0.00 41.46 2.18
853 1358 1.375098 CCTGCAGCAAGGCTCTTAGC 61.375 60.000 8.66 0.00 36.40 3.09
854 1359 0.675837 CTGCAGCAAGGCTCTTAGCA 60.676 55.000 0.00 0.00 44.75 3.49
855 1360 0.034767 TGCAGCAAGGCTCTTAGCAT 60.035 50.000 0.00 0.00 44.75 3.79
856 1361 0.381089 GCAGCAAGGCTCTTAGCATG 59.619 55.000 0.78 0.91 44.75 4.06
860 1365 1.153086 AAGGCTCTTAGCATGCGGG 60.153 57.895 13.01 6.65 44.75 6.13
861 1366 1.915078 AAGGCTCTTAGCATGCGGGT 61.915 55.000 13.01 0.00 44.75 5.28
862 1367 1.452108 GGCTCTTAGCATGCGGGTT 60.452 57.895 13.01 0.00 44.75 4.11
863 1368 1.718757 GGCTCTTAGCATGCGGGTTG 61.719 60.000 13.01 5.40 44.75 3.77
876 1391 3.357079 GGTTGCAGCACGTCCCTG 61.357 66.667 2.05 8.09 0.00 4.45
890 1405 3.258372 ACGTCCCTGCCTACATATACATG 59.742 47.826 0.00 0.00 38.21 3.21
926 1441 4.634883 ACTACGTACTACATCACCTCACAG 59.365 45.833 0.00 0.00 0.00 3.66
927 1442 2.753452 ACGTACTACATCACCTCACAGG 59.247 50.000 0.00 0.00 42.49 4.00
938 1453 1.294780 CTCACAGGGTCACCAGCTC 59.705 63.158 0.00 0.00 40.13 4.09
944 1459 1.306226 GGGTCACCAGCTCCTACCT 60.306 63.158 0.00 0.00 36.50 3.08
952 1467 1.406614 CCAGCTCCTACCTTCTTGCTG 60.407 57.143 0.00 0.00 44.97 4.41
967 1482 4.005650 TCTTGCTGAACAATCCAAGCTAG 58.994 43.478 0.00 0.00 37.72 3.42
971 1486 3.559242 GCTGAACAATCCAAGCTAGCTAG 59.441 47.826 19.70 16.84 0.00 3.42
972 1487 4.125703 CTGAACAATCCAAGCTAGCTAGG 58.874 47.826 19.70 13.38 0.00 3.02
978 1493 0.317938 CCAAGCTAGCTAGGCGTACG 60.318 60.000 19.70 11.84 34.52 3.67
980 1495 0.381089 AAGCTAGCTAGGCGTACGTG 59.619 55.000 19.70 6.27 34.52 4.49
989 1505 4.409218 GCGTACGTGGTGAGCCGA 62.409 66.667 17.90 0.00 37.67 5.54
991 1507 1.153901 CGTACGTGGTGAGCCGATT 60.154 57.895 7.22 0.00 37.67 3.34
1006 1522 2.609825 GATTGATCGAGCATGGCGT 58.390 52.632 3.25 0.00 0.00 5.68
1012 1528 4.569023 CGAGCATGGCGTCCGCTA 62.569 66.667 11.82 5.84 41.60 4.26
1013 1529 2.962253 GAGCATGGCGTCCGCTAC 60.962 66.667 11.82 0.00 41.60 3.58
1017 1533 3.770040 ATGGCGTCCGCTACTGCA 61.770 61.111 11.82 0.85 41.60 4.41
1137 1653 4.752879 CCCGACGCCGACATGGTT 62.753 66.667 0.00 0.00 41.21 3.67
1254 1770 7.873195 AGGTAATTAAGCTTGGTCCTAGAATT 58.127 34.615 9.86 6.98 29.36 2.17
1259 1775 7.605410 TTAAGCTTGGTCCTAGAATTAAACG 57.395 36.000 9.86 0.00 0.00 3.60
1270 1801 9.543783 GTCCTAGAATTAAACGGTTTGATCTAT 57.456 33.333 16.05 5.94 0.00 1.98
1279 1810 5.786264 ACGGTTTGATCTATTCTACGGAT 57.214 39.130 0.00 0.00 0.00 4.18
1526 2065 1.379443 ATCGAGGCCACGGTGAGTA 60.379 57.895 22.65 2.00 0.00 2.59
1527 2066 1.664321 ATCGAGGCCACGGTGAGTAC 61.664 60.000 22.65 0.00 0.00 2.73
1530 2069 1.180029 GAGGCCACGGTGAGTACTTA 58.820 55.000 10.28 0.00 0.00 2.24
1534 2073 1.274447 GCCACGGTGAGTACTTAACCT 59.726 52.381 20.46 9.55 0.00 3.50
1591 3409 8.942669 TTACAAACTTCATTTATACTTGCACG 57.057 30.769 0.00 0.00 0.00 5.34
1627 4016 2.037251 TGGCGAGCTCAAGAAACTAGTT 59.963 45.455 15.40 1.12 0.00 2.24
1634 4023 6.201044 CGAGCTCAAGAAACTAGTTGAAGAAA 59.799 38.462 15.40 0.00 32.36 2.52
1673 4062 2.740981 GGATTATCCGAAGCATCTGCAG 59.259 50.000 7.63 7.63 45.16 4.41
1754 4143 3.946558 ACTATGGAGTAGAGACGTGGAAC 59.053 47.826 0.00 0.00 32.65 3.62
1762 4151 3.305398 AGAGACGTGGAACAAGACATC 57.695 47.619 0.00 0.00 44.16 3.06
1768 4157 2.094258 CGTGGAACAAGACATCATTCCG 59.906 50.000 0.00 0.00 44.16 4.30
1786 4175 1.009675 GACTTGCAGGTGTTGTGCG 60.010 57.895 6.05 0.00 44.35 5.34
1797 4186 0.453793 TGTTGTGCGAAAACCACCTG 59.546 50.000 0.00 0.00 32.30 4.00
1830 4219 8.568732 TGTTTATTGAAAATCGTGAACTTTCC 57.431 30.769 5.74 0.00 0.00 3.13
1831 4220 7.650104 TGTTTATTGAAAATCGTGAACTTTCCC 59.350 33.333 5.74 0.00 0.00 3.97
1832 4221 4.577834 TTGAAAATCGTGAACTTTCCCC 57.422 40.909 5.74 0.00 0.00 4.81
1833 4222 2.550606 TGAAAATCGTGAACTTTCCCCG 59.449 45.455 5.74 0.00 0.00 5.73
1834 4223 0.879090 AAATCGTGAACTTTCCCCGC 59.121 50.000 0.00 0.00 0.00 6.13
1868 4257 7.980742 AAGAAAATCGTGAACTTTTTGTACC 57.019 32.000 0.00 0.00 0.00 3.34
1869 4258 7.090953 AGAAAATCGTGAACTTTTTGTACCA 57.909 32.000 0.00 0.00 0.00 3.25
1870 4259 7.540299 AGAAAATCGTGAACTTTTTGTACCAA 58.460 30.769 0.00 0.00 0.00 3.67
1871 4260 8.030106 AGAAAATCGTGAACTTTTTGTACCAAA 58.970 29.630 0.00 0.00 0.00 3.28
1872 4261 8.710835 AAAATCGTGAACTTTTTGTACCAAAT 57.289 26.923 0.00 0.00 0.00 2.32
1873 4262 7.692908 AATCGTGAACTTTTTGTACCAAATG 57.307 32.000 4.36 4.36 0.00 2.32
1874 4263 6.197364 TCGTGAACTTTTTGTACCAAATGT 57.803 33.333 5.44 5.44 0.00 2.71
1875 4264 7.317842 TCGTGAACTTTTTGTACCAAATGTA 57.682 32.000 10.24 0.00 0.00 2.29
1876 4265 7.759465 TCGTGAACTTTTTGTACCAAATGTAA 58.241 30.769 10.24 2.22 0.00 2.41
1911 4300 8.690203 TTGACAATTTCAGAGAACTTGGAATA 57.310 30.769 12.42 0.00 34.94 1.75
1980 4369 0.443869 CGAAATTGGCCGACTCACTG 59.556 55.000 0.00 0.00 0.00 3.66
2013 4402 4.800554 CGCAAGGTGACTCCCTTT 57.199 55.556 0.00 0.00 42.24 3.11
2014 4403 3.021451 CGCAAGGTGACTCCCTTTT 57.979 52.632 0.00 0.00 42.24 2.27
2015 4404 1.318576 CGCAAGGTGACTCCCTTTTT 58.681 50.000 0.00 0.00 42.24 1.94
2110 5805 7.443259 AACTTACGGTGCTTATATTTTGTGT 57.557 32.000 0.00 0.00 0.00 3.72
2317 6014 1.806542 AGAGTGTTAACGCAATGGCAG 59.193 47.619 20.62 0.00 41.24 4.85
2742 6439 0.108615 ACATGGTCTAGCTGCACGAC 60.109 55.000 1.02 7.58 0.00 4.34
2776 6473 1.787847 CACAGATCGTCCGGTTTGC 59.212 57.895 0.00 0.00 0.00 3.68
2779 6476 3.861263 GATCGTCCGGTTTGCGGC 61.861 66.667 0.00 0.00 0.00 6.53
2966 6664 1.346395 CATTGGTACTATAGCCGCCCA 59.654 52.381 0.00 0.00 0.00 5.36
3115 6818 2.169352 CACTACTGCAGGAATGGCTAGT 59.831 50.000 19.93 11.57 0.00 2.57
3216 6920 0.822164 CCGTTACTCCTGTCGGGATT 59.178 55.000 0.00 0.00 44.15 3.01
3225 6929 1.831736 CCTGTCGGGATTTAGACTGGT 59.168 52.381 11.66 0.00 45.50 4.00
3252 6956 6.934645 CCACAAATCAACACTAGTCTTTCCTA 59.065 38.462 0.00 0.00 0.00 2.94
3278 6982 3.106407 GTCCTCACTCGTGCGCAC 61.106 66.667 30.42 30.42 0.00 5.34
3321 7025 3.131046 GGTCACCCATCCTAAAATTGCTG 59.869 47.826 0.00 0.00 0.00 4.41
3368 7072 0.988145 TCATTCCGAATGGGCTCCCT 60.988 55.000 18.91 0.00 39.38 4.20
3369 7073 0.764890 CATTCCGAATGGGCTCCCTA 59.235 55.000 12.62 0.00 35.23 3.53
3370 7074 1.352352 CATTCCGAATGGGCTCCCTAT 59.648 52.381 12.62 0.00 35.23 2.57
3371 7075 1.518367 TTCCGAATGGGCTCCCTATT 58.482 50.000 6.50 4.67 36.94 1.73
3372 7076 0.764890 TCCGAATGGGCTCCCTATTG 59.235 55.000 6.50 0.00 36.94 1.90
3373 7077 0.250901 CCGAATGGGCTCCCTATTGG 60.251 60.000 6.50 4.72 36.94 3.16
3385 7089 2.930826 CCTATTGGGGAACGTAGCAT 57.069 50.000 0.00 0.00 0.00 3.79
3386 7090 2.494059 CCTATTGGGGAACGTAGCATG 58.506 52.381 0.00 0.00 0.00 4.06
3387 7091 1.873591 CTATTGGGGAACGTAGCATGC 59.126 52.381 10.51 10.51 0.00 4.06
3388 7092 0.034574 ATTGGGGAACGTAGCATGCA 60.035 50.000 21.98 2.77 0.00 3.96
3389 7093 0.250945 TTGGGGAACGTAGCATGCAA 60.251 50.000 21.98 0.00 0.00 4.08
3390 7094 0.034574 TGGGGAACGTAGCATGCAAT 60.035 50.000 21.98 1.90 0.00 3.56
3391 7095 1.102978 GGGGAACGTAGCATGCAATT 58.897 50.000 21.98 7.96 0.00 2.32
3392 7096 1.476488 GGGGAACGTAGCATGCAATTT 59.524 47.619 21.98 7.02 0.00 1.82
3393 7097 2.479560 GGGGAACGTAGCATGCAATTTC 60.480 50.000 21.98 15.31 0.00 2.17
3394 7098 2.163412 GGGAACGTAGCATGCAATTTCA 59.837 45.455 21.98 0.00 0.00 2.69
3395 7099 3.366883 GGGAACGTAGCATGCAATTTCAA 60.367 43.478 21.98 0.00 0.00 2.69
3396 7100 4.233789 GGAACGTAGCATGCAATTTCAAA 58.766 39.130 21.98 0.00 0.00 2.69
3397 7101 4.683781 GGAACGTAGCATGCAATTTCAAAA 59.316 37.500 21.98 0.00 0.00 2.44
3398 7102 5.176590 GGAACGTAGCATGCAATTTCAAAAA 59.823 36.000 21.98 0.00 0.00 1.94
3399 7103 6.128580 GGAACGTAGCATGCAATTTCAAAAAT 60.129 34.615 21.98 0.00 0.00 1.82
3400 7104 6.783892 ACGTAGCATGCAATTTCAAAAATT 57.216 29.167 21.98 0.00 0.00 1.82
3401 7105 7.188468 ACGTAGCATGCAATTTCAAAAATTT 57.812 28.000 21.98 0.00 0.00 1.82
3402 7106 7.638134 ACGTAGCATGCAATTTCAAAAATTTT 58.362 26.923 21.98 0.00 0.00 1.82
3403 7107 7.798052 ACGTAGCATGCAATTTCAAAAATTTTC 59.202 29.630 21.98 0.00 0.00 2.29
3404 7108 7.268872 CGTAGCATGCAATTTCAAAAATTTTCC 59.731 33.333 21.98 0.00 0.00 3.13
3405 7109 7.279750 AGCATGCAATTTCAAAAATTTTCCT 57.720 28.000 21.98 0.00 0.00 3.36
3406 7110 8.393671 AGCATGCAATTTCAAAAATTTTCCTA 57.606 26.923 21.98 0.00 0.00 2.94
3407 7111 8.291740 AGCATGCAATTTCAAAAATTTTCCTAC 58.708 29.630 21.98 0.00 0.00 3.18
3408 7112 7.268872 GCATGCAATTTCAAAAATTTTCCTACG 59.731 33.333 14.21 0.00 0.00 3.51
3409 7113 8.494347 CATGCAATTTCAAAAATTTTCCTACGA 58.506 29.630 3.41 0.00 0.00 3.43
3410 7114 8.600449 TGCAATTTCAAAAATTTTCCTACGAT 57.400 26.923 3.41 0.00 0.00 3.73
3411 7115 8.707839 TGCAATTTCAAAAATTTTCCTACGATC 58.292 29.630 3.41 0.00 0.00 3.69
3412 7116 8.707839 GCAATTTCAAAAATTTTCCTACGATCA 58.292 29.630 3.41 0.00 0.00 2.92
3414 7118 7.845617 TTTCAAAAATTTTCCTACGATCACG 57.154 32.000 3.41 0.00 45.75 4.35
3415 7119 5.387279 TCAAAAATTTTCCTACGATCACGC 58.613 37.500 3.41 0.00 43.96 5.34
3416 7120 5.049336 TCAAAAATTTTCCTACGATCACGCA 60.049 36.000 3.41 0.00 43.96 5.24
3417 7121 5.365403 AAAATTTTCCTACGATCACGCAA 57.635 34.783 0.00 0.00 43.96 4.85
3418 7122 4.600012 AATTTTCCTACGATCACGCAAG 57.400 40.909 0.00 0.00 43.96 4.01
3419 7123 3.306917 TTTTCCTACGATCACGCAAGA 57.693 42.857 0.00 0.00 43.96 3.02
3420 7124 3.520290 TTTCCTACGATCACGCAAGAT 57.480 42.857 0.00 0.00 43.96 2.40
3421 7125 2.776312 TCCTACGATCACGCAAGATC 57.224 50.000 5.52 5.52 43.96 2.75
3422 7126 2.298610 TCCTACGATCACGCAAGATCT 58.701 47.619 12.06 0.00 41.74 2.75
3423 7127 3.473625 TCCTACGATCACGCAAGATCTA 58.526 45.455 12.06 4.90 41.74 1.98
3424 7128 4.072839 TCCTACGATCACGCAAGATCTAT 58.927 43.478 12.06 4.73 41.74 1.98
3425 7129 4.154375 TCCTACGATCACGCAAGATCTATC 59.846 45.833 12.06 0.00 41.74 2.08
3426 7130 4.155099 CCTACGATCACGCAAGATCTATCT 59.845 45.833 12.06 0.00 41.74 1.98
3427 7131 5.351740 CCTACGATCACGCAAGATCTATCTA 59.648 44.000 12.06 0.00 41.74 1.98
3428 7132 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
3429 7133 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
3430 7134 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
3431 7135 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
3432 7136 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
3433 7137 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
3434 7138 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
3435 7139 4.157656 ACGCAAGATCTATCTAGGAGATGC 59.842 45.833 11.48 9.81 36.70 3.91
3436 7140 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
3437 7141 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
3438 7142 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
3439 7143 7.428020 GCAAGATCTATCTAGGAGATGCATAG 58.572 42.308 0.00 0.00 35.37 2.23
3440 7144 7.428020 CAAGATCTATCTAGGAGATGCATAGC 58.572 42.308 0.00 0.00 35.37 2.97
3441 7145 6.671605 AGATCTATCTAGGAGATGCATAGCA 58.328 40.000 0.00 0.00 38.03 3.49
3442 7146 7.124721 AGATCTATCTAGGAGATGCATAGCAA 58.875 38.462 0.00 0.00 37.47 3.91
3443 7147 7.785985 AGATCTATCTAGGAGATGCATAGCAAT 59.214 37.037 0.00 0.00 37.47 3.56
3444 7148 7.110043 TCTATCTAGGAGATGCATAGCAATG 57.890 40.000 0.00 0.00 43.62 2.82
3445 7149 6.894103 TCTATCTAGGAGATGCATAGCAATGA 59.106 38.462 0.00 0.00 43.62 2.57
3446 7150 5.402997 TCTAGGAGATGCATAGCAATGAG 57.597 43.478 0.00 0.00 43.62 2.90
3447 7151 5.082425 TCTAGGAGATGCATAGCAATGAGA 58.918 41.667 0.00 0.00 43.62 3.27
3448 7152 4.701651 AGGAGATGCATAGCAATGAGAA 57.298 40.909 0.00 0.00 43.62 2.87
3449 7153 4.643463 AGGAGATGCATAGCAATGAGAAG 58.357 43.478 0.00 0.00 43.62 2.85
3450 7154 3.752222 GGAGATGCATAGCAATGAGAAGG 59.248 47.826 0.00 0.00 43.62 3.46
3451 7155 3.752222 GAGATGCATAGCAATGAGAAGGG 59.248 47.826 0.00 0.00 43.62 3.95
3452 7156 2.353357 TGCATAGCAATGAGAAGGGG 57.647 50.000 0.00 0.00 34.76 4.79
3453 7157 1.845791 TGCATAGCAATGAGAAGGGGA 59.154 47.619 0.00 0.00 34.76 4.81
3454 7158 2.158711 TGCATAGCAATGAGAAGGGGAG 60.159 50.000 0.00 0.00 34.76 4.30
3455 7159 2.105477 GCATAGCAATGAGAAGGGGAGA 59.895 50.000 0.00 0.00 34.84 3.71
3456 7160 3.806507 GCATAGCAATGAGAAGGGGAGAG 60.807 52.174 0.00 0.00 34.84 3.20
3457 7161 1.963985 AGCAATGAGAAGGGGAGAGT 58.036 50.000 0.00 0.00 0.00 3.24
3458 7162 1.558756 AGCAATGAGAAGGGGAGAGTG 59.441 52.381 0.00 0.00 0.00 3.51
3459 7163 1.280421 GCAATGAGAAGGGGAGAGTGT 59.720 52.381 0.00 0.00 0.00 3.55
3460 7164 2.938756 GCAATGAGAAGGGGAGAGTGTG 60.939 54.545 0.00 0.00 0.00 3.82
3461 7165 2.304180 CAATGAGAAGGGGAGAGTGTGT 59.696 50.000 0.00 0.00 0.00 3.72
3462 7166 1.633774 TGAGAAGGGGAGAGTGTGTC 58.366 55.000 0.00 0.00 0.00 3.67
3463 7167 0.899019 GAGAAGGGGAGAGTGTGTCC 59.101 60.000 0.00 0.00 0.00 4.02
3464 7168 0.191064 AGAAGGGGAGAGTGTGTCCA 59.809 55.000 0.00 0.00 35.57 4.02
3465 7169 0.321996 GAAGGGGAGAGTGTGTCCAC 59.678 60.000 0.00 0.00 42.17 4.02
3466 7170 1.472662 AAGGGGAGAGTGTGTCCACG 61.473 60.000 0.00 0.00 46.56 4.94
3467 7171 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
3468 7172 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
3469 7173 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
3470 7174 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
3471 7175 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
3472 7176 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
3473 7177 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
3474 7178 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
3475 7179 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
3476 7180 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
3477 7181 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
3478 7182 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
3479 7183 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
3480 7184 0.615331 TCCACGTACCCTCGTAGACT 59.385 55.000 0.00 0.00 42.27 3.24
3481 7185 0.731417 CCACGTACCCTCGTAGACTG 59.269 60.000 0.00 0.00 42.27 3.51
3482 7186 1.676916 CCACGTACCCTCGTAGACTGA 60.677 57.143 0.00 0.00 42.27 3.41
3483 7187 2.079158 CACGTACCCTCGTAGACTGAA 58.921 52.381 0.00 0.00 42.27 3.02
3484 7188 2.485426 CACGTACCCTCGTAGACTGAAA 59.515 50.000 0.00 0.00 42.27 2.69
3485 7189 2.746362 ACGTACCCTCGTAGACTGAAAG 59.254 50.000 0.00 0.00 42.35 2.62
3486 7190 2.477525 CGTACCCTCGTAGACTGAAAGC 60.478 54.545 0.00 0.00 37.60 3.51
3487 7191 0.526662 ACCCTCGTAGACTGAAAGCG 59.473 55.000 0.00 0.00 37.60 4.68
3488 7192 0.179134 CCCTCGTAGACTGAAAGCGG 60.179 60.000 0.00 0.00 37.60 5.52
3489 7193 0.809385 CCTCGTAGACTGAAAGCGGA 59.191 55.000 0.00 0.00 37.60 5.54
3490 7194 1.201647 CCTCGTAGACTGAAAGCGGAA 59.798 52.381 0.00 0.00 37.60 4.30
3491 7195 2.520979 CTCGTAGACTGAAAGCGGAAG 58.479 52.381 0.00 0.00 37.60 3.46
3513 7217 3.378959 GTTAGGTTAACGCGGTTGATG 57.621 47.619 12.47 0.00 0.00 3.07
3514 7218 2.738314 GTTAGGTTAACGCGGTTGATGT 59.262 45.455 12.47 0.00 0.00 3.06
3515 7219 2.747396 AGGTTAACGCGGTTGATGTA 57.253 45.000 12.47 0.00 0.00 2.29
3516 7220 2.613691 AGGTTAACGCGGTTGATGTAG 58.386 47.619 12.47 0.00 0.00 2.74
3517 7221 2.028748 AGGTTAACGCGGTTGATGTAGT 60.029 45.455 12.47 0.00 0.00 2.73
3518 7222 2.346545 GGTTAACGCGGTTGATGTAGTC 59.653 50.000 12.47 0.00 0.00 2.59
3519 7223 1.898938 TAACGCGGTTGATGTAGTCG 58.101 50.000 12.47 0.00 0.00 4.18
3520 7224 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
3521 7225 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
3522 7226 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
3524 7228 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
3525 7229 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
3526 7230 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
3527 7231 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
3528 7232 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
3535 7239 3.286669 CGAACGTCTTCGCGATCC 58.713 61.111 10.88 0.00 42.72 3.36
3536 7240 1.513373 CGAACGTCTTCGCGATCCA 60.513 57.895 10.88 0.00 42.72 3.41
3537 7241 1.068832 CGAACGTCTTCGCGATCCAA 61.069 55.000 10.88 0.00 42.72 3.53
3538 7242 0.365859 GAACGTCTTCGCGATCCAAC 59.634 55.000 10.88 5.11 41.18 3.77
3539 7243 1.012486 AACGTCTTCGCGATCCAACC 61.012 55.000 10.88 0.00 41.18 3.77
3540 7244 2.505498 CGTCTTCGCGATCCAACCG 61.505 63.158 10.88 3.09 0.00 4.44
3541 7245 1.153901 GTCTTCGCGATCCAACCGA 60.154 57.895 10.88 0.00 0.00 4.69
3542 7246 0.527817 GTCTTCGCGATCCAACCGAT 60.528 55.000 10.88 0.00 0.00 4.18
3543 7247 0.248907 TCTTCGCGATCCAACCGATC 60.249 55.000 10.88 0.00 43.58 3.69
3544 7248 0.527600 CTTCGCGATCCAACCGATCA 60.528 55.000 10.88 0.00 46.85 2.92
3545 7249 0.108567 TTCGCGATCCAACCGATCAA 60.109 50.000 10.88 0.00 46.85 2.57
3546 7250 0.527600 TCGCGATCCAACCGATCAAG 60.528 55.000 3.71 0.00 46.85 3.02
3547 7251 0.806102 CGCGATCCAACCGATCAAGT 60.806 55.000 0.00 0.00 46.85 3.16
3548 7252 1.535226 CGCGATCCAACCGATCAAGTA 60.535 52.381 0.00 0.00 46.85 2.24
3549 7253 1.859080 GCGATCCAACCGATCAAGTAC 59.141 52.381 0.00 0.00 46.85 2.73
3550 7254 2.470821 CGATCCAACCGATCAAGTACC 58.529 52.381 0.00 0.00 46.85 3.34
3551 7255 2.470821 GATCCAACCGATCAAGTACCG 58.529 52.381 0.00 0.00 45.92 4.02
3552 7256 1.548081 TCCAACCGATCAAGTACCGA 58.452 50.000 0.00 0.00 0.00 4.69
3553 7257 1.894466 TCCAACCGATCAAGTACCGAA 59.106 47.619 0.00 0.00 0.00 4.30
3554 7258 1.997606 CCAACCGATCAAGTACCGAAC 59.002 52.381 0.00 0.00 0.00 3.95
3555 7259 1.652124 CAACCGATCAAGTACCGAACG 59.348 52.381 5.81 5.81 0.00 3.95
3556 7260 0.883833 ACCGATCAAGTACCGAACGT 59.116 50.000 10.35 0.00 0.00 3.99
3557 7261 2.083774 ACCGATCAAGTACCGAACGTA 58.916 47.619 10.35 0.00 0.00 3.57
3558 7262 2.684881 ACCGATCAAGTACCGAACGTAT 59.315 45.455 10.35 0.00 0.00 3.06
3559 7263 3.040795 CCGATCAAGTACCGAACGTATG 58.959 50.000 10.35 0.00 0.00 2.39
3560 7264 3.040795 CGATCAAGTACCGAACGTATGG 58.959 50.000 4.54 4.54 0.00 2.74
3561 7265 2.282701 TCAAGTACCGAACGTATGGC 57.717 50.000 5.93 0.00 0.00 4.40
3562 7266 1.545136 TCAAGTACCGAACGTATGGCA 59.455 47.619 5.93 0.00 0.00 4.92
3563 7267 1.657094 CAAGTACCGAACGTATGGCAC 59.343 52.381 5.93 3.84 0.00 5.01
3564 7268 0.174162 AGTACCGAACGTATGGCACC 59.826 55.000 5.93 0.00 0.00 5.01
3565 7269 0.174162 GTACCGAACGTATGGCACCT 59.826 55.000 5.93 0.00 0.00 4.00
3566 7270 0.457035 TACCGAACGTATGGCACCTC 59.543 55.000 5.93 0.00 0.00 3.85
3567 7271 1.520787 CCGAACGTATGGCACCTCC 60.521 63.158 0.00 0.00 0.00 4.30
3568 7272 1.876714 CGAACGTATGGCACCTCCG 60.877 63.158 0.00 0.00 37.80 4.63
3569 7273 1.514087 GAACGTATGGCACCTCCGA 59.486 57.895 0.00 0.00 37.80 4.55
3570 7274 0.527817 GAACGTATGGCACCTCCGAG 60.528 60.000 0.00 0.00 37.80 4.63
3571 7275 1.255667 AACGTATGGCACCTCCGAGT 61.256 55.000 0.00 0.00 37.80 4.18
3572 7276 1.255667 ACGTATGGCACCTCCGAGTT 61.256 55.000 0.00 0.00 37.80 3.01
3573 7277 0.527817 CGTATGGCACCTCCGAGTTC 60.528 60.000 0.00 0.00 37.80 3.01
3574 7278 0.824759 GTATGGCACCTCCGAGTTCT 59.175 55.000 0.00 0.00 37.80 3.01
3575 7279 0.824109 TATGGCACCTCCGAGTTCTG 59.176 55.000 0.00 0.00 37.80 3.02
3576 7280 2.435059 GGCACCTCCGAGTTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
3577 7281 2.343758 GCACCTCCGAGTTCTGCA 59.656 61.111 0.00 0.00 0.00 4.41
3578 7282 2.029844 GCACCTCCGAGTTCTGCAC 61.030 63.158 0.00 0.00 0.00 4.57
3579 7283 1.367471 CACCTCCGAGTTCTGCACA 59.633 57.895 0.00 0.00 0.00 4.57
3580 7284 0.036952 CACCTCCGAGTTCTGCACAT 60.037 55.000 0.00 0.00 0.00 3.21
3581 7285 0.036952 ACCTCCGAGTTCTGCACATG 60.037 55.000 0.00 0.00 0.00 3.21
3582 7286 0.036952 CCTCCGAGTTCTGCACATGT 60.037 55.000 0.00 0.00 0.00 3.21
3583 7287 1.609061 CCTCCGAGTTCTGCACATGTT 60.609 52.381 0.00 0.00 0.00 2.71
3584 7288 1.728971 CTCCGAGTTCTGCACATGTTC 59.271 52.381 0.00 0.00 0.00 3.18
3585 7289 1.069978 TCCGAGTTCTGCACATGTTCA 59.930 47.619 0.00 0.00 0.00 3.18
3586 7290 1.462283 CCGAGTTCTGCACATGTTCAG 59.538 52.381 18.14 18.14 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.448013 GGAAAGCTCGTCGGAAGGG 60.448 63.158 0.00 0.00 0.00 3.95
2 3 0.320421 TTGGAAAGCTCGTCGGAAGG 60.320 55.000 0.00 0.00 0.00 3.46
3 4 1.071605 CTTGGAAAGCTCGTCGGAAG 58.928 55.000 0.00 0.00 36.98 3.46
4 5 0.320421 CCTTGGAAAGCTCGTCGGAA 60.320 55.000 0.00 0.00 44.44 4.30
5 6 1.292223 CCTTGGAAAGCTCGTCGGA 59.708 57.895 0.00 0.00 44.44 4.55
6 7 2.391389 GCCTTGGAAAGCTCGTCGG 61.391 63.158 0.00 0.00 44.44 4.79
7 8 1.021390 ATGCCTTGGAAAGCTCGTCG 61.021 55.000 0.00 0.00 44.44 5.12
8 9 0.449388 CATGCCTTGGAAAGCTCGTC 59.551 55.000 0.00 0.00 44.44 4.20
9 10 0.250901 ACATGCCTTGGAAAGCTCGT 60.251 50.000 0.00 0.00 44.44 4.18
10 11 0.883833 AACATGCCTTGGAAAGCTCG 59.116 50.000 0.00 0.00 44.44 5.03
11 12 1.615392 ACAACATGCCTTGGAAAGCTC 59.385 47.619 0.00 0.00 44.44 4.09
12 13 1.708341 ACAACATGCCTTGGAAAGCT 58.292 45.000 0.00 0.00 44.44 3.74
13 14 2.407090 GAACAACATGCCTTGGAAAGC 58.593 47.619 0.00 0.00 44.44 3.51
14 15 2.664916 CGAACAACATGCCTTGGAAAG 58.335 47.619 0.00 0.00 45.69 2.62
15 16 1.269517 GCGAACAACATGCCTTGGAAA 60.270 47.619 0.00 0.00 0.00 3.13
16 17 0.313672 GCGAACAACATGCCTTGGAA 59.686 50.000 0.00 0.00 0.00 3.53
17 18 1.523154 GGCGAACAACATGCCTTGGA 61.523 55.000 0.00 0.00 45.40 3.53
18 19 1.080569 GGCGAACAACATGCCTTGG 60.081 57.895 0.00 0.00 45.40 3.61
19 20 4.557942 GGCGAACAACATGCCTTG 57.442 55.556 0.00 0.00 45.40 3.61
23 24 4.776647 GGCGGGCGAACAACATGC 62.777 66.667 0.00 0.00 0.00 4.06
24 25 4.459331 CGGCGGGCGAACAACATG 62.459 66.667 20.10 0.00 0.00 3.21
25 26 4.690719 TCGGCGGGCGAACAACAT 62.691 61.111 24.84 0.00 0.00 2.71
31 32 4.612412 AAACACTCGGCGGGCGAA 62.612 61.111 26.63 11.42 0.00 4.70
37 38 3.726517 CTGGGCAAACACTCGGCG 61.727 66.667 0.00 0.00 0.00 6.46
38 39 3.365265 CCTGGGCAAACACTCGGC 61.365 66.667 0.00 0.00 0.00 5.54
39 40 2.672996 CCCTGGGCAAACACTCGG 60.673 66.667 0.00 0.00 0.00 4.63
40 41 1.966451 GACCCTGGGCAAACACTCG 60.966 63.158 14.08 0.00 0.00 4.18
41 42 1.966451 CGACCCTGGGCAAACACTC 60.966 63.158 14.08 0.00 0.00 3.51
42 43 1.990160 TTCGACCCTGGGCAAACACT 61.990 55.000 14.08 0.00 0.00 3.55
43 44 1.104577 TTTCGACCCTGGGCAAACAC 61.105 55.000 14.08 0.00 0.00 3.32
44 45 1.104577 GTTTCGACCCTGGGCAAACA 61.105 55.000 21.86 1.53 0.00 2.83
45 46 1.658114 GTTTCGACCCTGGGCAAAC 59.342 57.895 14.08 15.17 0.00 2.93
46 47 1.529713 GGTTTCGACCCTGGGCAAA 60.530 57.895 14.08 6.82 0.00 3.68
47 48 2.114411 GGTTTCGACCCTGGGCAA 59.886 61.111 14.08 0.00 0.00 4.52
48 49 2.852075 AGGTTTCGACCCTGGGCA 60.852 61.111 14.08 0.00 0.00 5.36
49 50 2.046217 GAGGTTTCGACCCTGGGC 60.046 66.667 14.08 4.77 30.60 5.36
50 51 1.900545 GAGGAGGTTTCGACCCTGGG 61.901 65.000 12.28 12.28 30.60 4.45
51 52 1.597461 GAGGAGGTTTCGACCCTGG 59.403 63.158 7.54 0.00 30.60 4.45
52 53 0.905337 AGGAGGAGGTTTCGACCCTG 60.905 60.000 7.54 0.00 30.60 4.45
53 54 0.615261 GAGGAGGAGGTTTCGACCCT 60.615 60.000 2.47 2.47 34.11 4.34
54 55 1.615165 GGAGGAGGAGGTTTCGACCC 61.615 65.000 0.00 0.00 0.00 4.46
55 56 0.903454 TGGAGGAGGAGGTTTCGACC 60.903 60.000 0.00 0.00 0.00 4.79
56 57 0.974383 TTGGAGGAGGAGGTTTCGAC 59.026 55.000 0.00 0.00 0.00 4.20
57 58 0.974383 GTTGGAGGAGGAGGTTTCGA 59.026 55.000 0.00 0.00 0.00 3.71
58 59 0.685097 TGTTGGAGGAGGAGGTTTCG 59.315 55.000 0.00 0.00 0.00 3.46
59 60 2.573915 AGATGTTGGAGGAGGAGGTTTC 59.426 50.000 0.00 0.00 0.00 2.78
60 61 2.307098 CAGATGTTGGAGGAGGAGGTTT 59.693 50.000 0.00 0.00 0.00 3.27
61 62 1.912043 CAGATGTTGGAGGAGGAGGTT 59.088 52.381 0.00 0.00 0.00 3.50
62 63 1.203364 ACAGATGTTGGAGGAGGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
63 64 1.209019 CACAGATGTTGGAGGAGGAGG 59.791 57.143 0.00 0.00 0.00 4.30
64 65 1.905215 ACACAGATGTTGGAGGAGGAG 59.095 52.381 0.00 0.00 34.46 3.69
65 66 1.625315 CACACAGATGTTGGAGGAGGA 59.375 52.381 0.00 0.00 36.72 3.71
66 67 1.349026 ACACACAGATGTTGGAGGAGG 59.651 52.381 0.00 0.00 36.72 4.30
67 68 2.301296 AGACACACAGATGTTGGAGGAG 59.699 50.000 0.00 0.00 36.72 3.69
68 69 2.329267 AGACACACAGATGTTGGAGGA 58.671 47.619 0.00 0.00 36.72 3.71
69 70 2.847327 AGACACACAGATGTTGGAGG 57.153 50.000 0.00 0.00 36.72 4.30
70 71 4.108336 CGATAGACACACAGATGTTGGAG 58.892 47.826 0.00 0.00 35.35 3.86
71 72 3.676049 GCGATAGACACACAGATGTTGGA 60.676 47.826 0.00 0.00 35.35 3.53
72 73 2.604914 GCGATAGACACACAGATGTTGG 59.395 50.000 0.00 0.00 35.35 3.77
73 74 3.914555 GCGATAGACACACAGATGTTG 57.085 47.619 0.00 0.00 35.35 3.33
96 97 4.400961 AACTGGGCTCTGCTCCGC 62.401 66.667 0.00 0.00 0.00 5.54
97 98 2.435586 CAACTGGGCTCTGCTCCG 60.436 66.667 0.00 0.00 0.00 4.63
98 99 2.045536 CCAACTGGGCTCTGCTCC 60.046 66.667 0.00 0.00 0.00 4.70
107 108 2.192861 TGTCGCTTTGCCAACTGGG 61.193 57.895 0.00 0.00 40.85 4.45
108 109 1.008538 GTGTCGCTTTGCCAACTGG 60.009 57.895 0.00 0.00 38.53 4.00
109 110 1.195448 CTAGTGTCGCTTTGCCAACTG 59.805 52.381 0.00 0.00 0.00 3.16
110 111 1.202651 ACTAGTGTCGCTTTGCCAACT 60.203 47.619 0.00 0.00 0.00 3.16
111 112 1.069906 CACTAGTGTCGCTTTGCCAAC 60.070 52.381 15.06 0.00 0.00 3.77
112 113 1.225855 CACTAGTGTCGCTTTGCCAA 58.774 50.000 15.06 0.00 0.00 4.52
113 114 1.227999 GCACTAGTGTCGCTTTGCCA 61.228 55.000 23.44 0.00 32.10 4.92
114 115 1.227999 TGCACTAGTGTCGCTTTGCC 61.228 55.000 23.44 4.72 35.38 4.52
115 116 0.164647 CTGCACTAGTGTCGCTTTGC 59.835 55.000 23.44 7.68 36.25 3.68
116 117 1.502231 ACTGCACTAGTGTCGCTTTG 58.498 50.000 23.44 8.91 38.49 2.77
117 118 2.240493 AACTGCACTAGTGTCGCTTT 57.760 45.000 23.44 7.90 40.26 3.51
118 119 3.005472 TCTTAACTGCACTAGTGTCGCTT 59.995 43.478 23.44 12.18 40.26 4.68
119 120 2.557056 TCTTAACTGCACTAGTGTCGCT 59.443 45.455 23.44 9.23 40.26 4.93
120 121 2.942710 TCTTAACTGCACTAGTGTCGC 58.057 47.619 23.44 10.56 40.26 5.19
121 122 4.733850 TGATCTTAACTGCACTAGTGTCG 58.266 43.478 23.44 16.41 40.26 4.35
122 123 6.254589 GTGATGATCTTAACTGCACTAGTGTC 59.745 42.308 23.44 15.87 40.26 3.67
123 124 6.102663 GTGATGATCTTAACTGCACTAGTGT 58.897 40.000 23.44 6.84 40.26 3.55
124 125 6.035435 GTGTGATGATCTTAACTGCACTAGTG 59.965 42.308 18.93 18.93 40.26 2.74
125 126 6.102663 GTGTGATGATCTTAACTGCACTAGT 58.897 40.000 0.00 0.00 42.89 2.57
126 127 6.035435 GTGTGTGATGATCTTAACTGCACTAG 59.965 42.308 12.70 0.00 0.00 2.57
127 128 5.869344 GTGTGTGATGATCTTAACTGCACTA 59.131 40.000 12.70 0.00 0.00 2.74
128 129 4.692625 GTGTGTGATGATCTTAACTGCACT 59.307 41.667 12.70 0.00 0.00 4.40
129 130 4.434725 CGTGTGTGATGATCTTAACTGCAC 60.435 45.833 11.14 11.14 0.00 4.57
130 131 3.679502 CGTGTGTGATGATCTTAACTGCA 59.320 43.478 0.00 0.00 0.00 4.41
131 132 3.062639 CCGTGTGTGATGATCTTAACTGC 59.937 47.826 0.00 0.00 0.00 4.40
132 133 4.245660 ACCGTGTGTGATGATCTTAACTG 58.754 43.478 0.00 0.00 0.00 3.16
133 134 4.537135 ACCGTGTGTGATGATCTTAACT 57.463 40.909 0.00 0.00 0.00 2.24
134 135 4.688879 TCAACCGTGTGTGATGATCTTAAC 59.311 41.667 0.00 0.00 0.00 2.01
135 136 4.888917 TCAACCGTGTGTGATGATCTTAA 58.111 39.130 0.00 0.00 0.00 1.85
167 168 2.096466 TCTCGTTTTTGCGTGTGCTATG 60.096 45.455 0.00 0.00 43.34 2.23
168 169 2.096417 GTCTCGTTTTTGCGTGTGCTAT 60.096 45.455 0.00 0.00 43.34 2.97
207 209 3.769739 GTGTGATGCACCCCTATCATA 57.230 47.619 0.00 0.00 42.10 2.15
294 296 2.884012 CTGACCTGTGATAGAGAGCGAT 59.116 50.000 0.00 0.00 0.00 4.58
319 321 2.740438 CGGGGGCAAAAACCTTGG 59.260 61.111 0.00 0.00 0.00 3.61
320 322 2.030412 GCGGGGGCAAAAACCTTG 59.970 61.111 0.00 0.00 0.00 3.61
321 323 2.123033 AGCGGGGGCAAAAACCTT 60.123 55.556 0.00 0.00 0.00 3.50
322 324 2.600470 GAGCGGGGGCAAAAACCT 60.600 61.111 0.00 0.00 0.00 3.50
323 325 3.691342 GGAGCGGGGGCAAAAACC 61.691 66.667 0.00 0.00 0.00 3.27
324 326 2.434658 CTTGGAGCGGGGGCAAAAAC 62.435 60.000 0.00 0.00 0.00 2.43
325 327 2.123251 TTGGAGCGGGGGCAAAAA 60.123 55.556 0.00 0.00 0.00 1.94
326 328 2.600173 CTTGGAGCGGGGGCAAAA 60.600 61.111 0.00 0.00 0.00 2.44
333 335 3.726517 CACGTTGCTTGGAGCGGG 61.727 66.667 3.52 0.00 46.26 6.13
334 336 2.664851 TCACGTTGCTTGGAGCGG 60.665 61.111 3.52 0.00 46.26 5.52
335 337 1.664649 TCTCACGTTGCTTGGAGCG 60.665 57.895 0.00 0.00 46.26 5.03
336 338 1.569479 GGTCTCACGTTGCTTGGAGC 61.569 60.000 0.00 0.00 42.82 4.70
337 339 0.951040 GGGTCTCACGTTGCTTGGAG 60.951 60.000 0.00 0.00 0.00 3.86
338 340 1.070786 GGGTCTCACGTTGCTTGGA 59.929 57.895 0.00 0.00 0.00 3.53
355 357 1.514087 GCCACATCCATGCACAAGG 59.486 57.895 0.00 0.00 0.00 3.61
391 400 1.130561 GCGTAAAGGTCAATGGCTGTC 59.869 52.381 0.00 0.00 0.00 3.51
404 435 1.347320 GACTTGGACCTCGCGTAAAG 58.653 55.000 5.77 4.96 0.00 1.85
407 438 1.604308 TGGACTTGGACCTCGCGTA 60.604 57.895 5.77 0.00 0.00 4.42
417 448 3.491598 AACCCGGCTGTGGACTTGG 62.492 63.158 0.00 0.00 0.00 3.61
454 485 2.661866 AGCACAAGACGTGGACGC 60.662 61.111 0.00 0.00 46.45 5.19
480 511 1.420138 TGGAAGGGAGAAGACCAACAC 59.580 52.381 0.00 0.00 0.00 3.32
481 512 1.814429 TGGAAGGGAGAAGACCAACA 58.186 50.000 0.00 0.00 0.00 3.33
526 557 8.034804 GTCCAACAATAATAACTTGCTCCATTT 58.965 33.333 0.00 0.00 0.00 2.32
527 558 7.397192 AGTCCAACAATAATAACTTGCTCCATT 59.603 33.333 0.00 0.00 0.00 3.16
528 559 6.891908 AGTCCAACAATAATAACTTGCTCCAT 59.108 34.615 0.00 0.00 0.00 3.41
529 560 6.150976 CAGTCCAACAATAATAACTTGCTCCA 59.849 38.462 0.00 0.00 0.00 3.86
530 561 6.404734 CCAGTCCAACAATAATAACTTGCTCC 60.405 42.308 0.00 0.00 0.00 4.70
531 562 6.151144 ACCAGTCCAACAATAATAACTTGCTC 59.849 38.462 0.00 0.00 0.00 4.26
532 563 6.010219 ACCAGTCCAACAATAATAACTTGCT 58.990 36.000 0.00 0.00 0.00 3.91
533 564 6.072175 TGACCAGTCCAACAATAATAACTTGC 60.072 38.462 0.00 0.00 0.00 4.01
534 565 7.447374 TGACCAGTCCAACAATAATAACTTG 57.553 36.000 0.00 0.00 0.00 3.16
545 576 1.074775 GCCCATGACCAGTCCAACA 59.925 57.895 0.00 0.00 0.00 3.33
547 578 1.561769 ATCGCCCATGACCAGTCCAA 61.562 55.000 0.00 0.00 0.00 3.53
560 591 3.950794 TTGGTGACAGCGATCGCCC 62.951 63.158 34.89 27.29 46.94 6.13
578 613 4.373116 CCACGTACGCACCTGCCT 62.373 66.667 16.72 0.00 37.91 4.75
592 627 0.108138 AGATAAGCTGCGGTGACCAC 60.108 55.000 1.11 0.00 0.00 4.16
620 655 2.414957 CGGCACACAGACACGAGTAATA 60.415 50.000 0.00 0.00 0.00 0.98
625 660 2.016704 GTCGGCACACAGACACGAG 61.017 63.158 0.00 0.00 37.34 4.18
650 685 3.582714 GACAAATCCTTGGCCTTCTTG 57.417 47.619 3.32 1.75 34.08 3.02
715 1042 8.469902 CGTGTTGCTACGTATAGAATAGAAAAG 58.530 37.037 0.00 0.00 39.13 2.27
721 1048 4.036616 TGGCGTGTTGCTACGTATAGAATA 59.963 41.667 0.00 0.00 45.36 1.75
727 1054 1.286501 CATGGCGTGTTGCTACGTAT 58.713 50.000 0.00 3.82 45.36 3.06
729 1056 2.677003 GCATGGCGTGTTGCTACGT 61.677 57.895 8.75 0.00 45.36 3.57
730 1057 2.098298 GCATGGCGTGTTGCTACG 59.902 61.111 8.75 4.72 45.43 3.51
740 1245 3.200593 GGCAGACAGAGCATGGCG 61.201 66.667 0.00 0.00 44.27 5.69
746 1251 1.067250 GAGATCCGGCAGACAGAGC 59.933 63.158 0.00 0.00 0.00 4.09
762 1267 1.726791 CTTTTCACGACGACCATGGAG 59.273 52.381 21.47 14.50 0.00 3.86
763 1268 1.069513 ACTTTTCACGACGACCATGGA 59.930 47.619 21.47 0.00 0.00 3.41
764 1269 1.459592 GACTTTTCACGACGACCATGG 59.540 52.381 11.19 11.19 0.00 3.66
765 1270 2.404215 AGACTTTTCACGACGACCATG 58.596 47.619 0.00 0.00 0.00 3.66
766 1271 2.609737 GGAGACTTTTCACGACGACCAT 60.610 50.000 0.00 0.00 0.00 3.55
786 1291 0.888619 GCTTTCCTTTTCTTCCCCGG 59.111 55.000 0.00 0.00 0.00 5.73
807 1312 2.104451 AGAGGGTAGCTAACGATCGAGA 59.896 50.000 24.34 7.86 0.00 4.04
809 1314 2.617308 CAAGAGGGTAGCTAACGATCGA 59.383 50.000 24.34 0.00 0.00 3.59
810 1315 2.859032 GCAAGAGGGTAGCTAACGATCG 60.859 54.545 14.88 14.88 0.00 3.69
811 1316 2.745102 GCAAGAGGGTAGCTAACGATC 58.255 52.381 1.91 3.60 0.00 3.69
812 1317 1.067212 CGCAAGAGGGTAGCTAACGAT 59.933 52.381 1.91 0.00 43.02 3.73
842 1347 1.153086 CCCGCATGCTAAGAGCCTT 60.153 57.895 17.13 0.00 41.51 4.35
860 1365 4.030452 GCAGGGACGTGCTGCAAC 62.030 66.667 20.48 0.00 42.98 4.17
863 1368 4.082523 TAGGCAGGGACGTGCTGC 62.083 66.667 18.32 18.32 43.45 5.25
865 1370 0.686441 TATGTAGGCAGGGACGTGCT 60.686 55.000 15.43 5.78 43.45 4.40
868 1373 2.953453 TGTATATGTAGGCAGGGACGT 58.047 47.619 0.00 0.00 0.00 4.34
869 1374 3.258372 ACATGTATATGTAGGCAGGGACG 59.742 47.826 2.87 0.00 45.45 4.79
870 1375 4.569943 CACATGTATATGTAGGCAGGGAC 58.430 47.826 4.64 0.00 45.53 4.46
915 1430 0.473694 TGGTGACCCTGTGAGGTGAT 60.474 55.000 0.00 0.00 41.42 3.06
926 1441 0.910088 AAGGTAGGAGCTGGTGACCC 60.910 60.000 0.00 0.00 0.00 4.46
927 1442 0.537653 GAAGGTAGGAGCTGGTGACC 59.462 60.000 0.00 0.00 0.00 4.02
938 1453 3.691609 GGATTGTTCAGCAAGAAGGTAGG 59.308 47.826 0.00 0.00 40.86 3.18
944 1459 3.225104 AGCTTGGATTGTTCAGCAAGAA 58.775 40.909 0.00 0.00 40.86 2.52
952 1467 2.875317 GCCTAGCTAGCTTGGATTGTTC 59.125 50.000 38.83 21.46 40.55 3.18
967 1482 1.226603 CTCACCACGTACGCCTAGC 60.227 63.158 16.72 0.00 0.00 3.42
972 1487 3.695022 ATCGGCTCACCACGTACGC 62.695 63.158 16.72 0.00 34.57 4.42
978 1493 2.301505 CGATCAATCGGCTCACCAC 58.698 57.895 4.48 0.00 45.93 4.16
988 1504 0.510359 GACGCCATGCTCGATCAATC 59.490 55.000 11.67 0.00 0.00 2.67
989 1505 0.882042 GGACGCCATGCTCGATCAAT 60.882 55.000 11.67 0.00 0.00 2.57
991 1507 2.106938 GGACGCCATGCTCGATCA 59.893 61.111 11.67 0.00 0.00 2.92
1254 1770 7.099266 TCCGTAGAATAGATCAAACCGTTTA 57.901 36.000 0.00 0.00 0.00 2.01
1259 1775 5.177696 GCACATCCGTAGAATAGATCAAACC 59.822 44.000 0.00 0.00 0.00 3.27
1270 1801 0.459899 ATGAGCGCACATCCGTAGAA 59.540 50.000 14.92 0.00 0.00 2.10
1279 1810 2.327343 GCACCTTGATGAGCGCACA 61.327 57.895 10.65 10.65 0.00 4.57
1515 2054 2.094338 GGAGGTTAAGTACTCACCGTGG 60.094 54.545 15.37 0.00 35.54 4.94
1526 2065 6.708285 ACGAATTACAGAATGGAGGTTAAGT 58.292 36.000 0.00 0.00 43.62 2.24
1527 2066 7.611213 AACGAATTACAGAATGGAGGTTAAG 57.389 36.000 0.00 0.00 43.62 1.85
1530 2069 6.238648 AGAAACGAATTACAGAATGGAGGTT 58.761 36.000 0.00 0.00 43.62 3.50
1534 2073 7.504924 AACAAGAAACGAATTACAGAATGGA 57.495 32.000 0.00 0.00 43.62 3.41
1572 3184 6.554334 ACAACGTGCAAGTATAAATGAAGT 57.446 33.333 5.50 0.00 0.00 3.01
1573 3185 9.554724 AATAACAACGTGCAAGTATAAATGAAG 57.445 29.630 5.50 0.00 0.00 3.02
1584 3402 6.632834 GCCAATCTATAATAACAACGTGCAAG 59.367 38.462 0.00 0.00 0.00 4.01
1585 3403 6.491394 GCCAATCTATAATAACAACGTGCAA 58.509 36.000 0.00 0.00 0.00 4.08
1590 3408 5.405571 AGCTCGCCAATCTATAATAACAACG 59.594 40.000 0.00 0.00 0.00 4.10
1591 3409 6.423905 TGAGCTCGCCAATCTATAATAACAAC 59.576 38.462 9.64 0.00 0.00 3.32
1600 3418 3.827008 TTCTTGAGCTCGCCAATCTAT 57.173 42.857 9.64 0.00 0.00 1.98
1627 4016 9.151471 CCGATGTACTTTATCTTTCTTTCTTCA 57.849 33.333 0.00 0.00 0.00 3.02
1634 4023 9.930693 GGATAATCCGATGTACTTTATCTTTCT 57.069 33.333 0.00 0.00 32.45 2.52
1673 4062 3.093278 CGCCCTTCTGATCGTTGC 58.907 61.111 0.00 0.00 0.00 4.17
1754 4143 2.743664 TGCAAGTCGGAATGATGTCTTG 59.256 45.455 0.00 0.00 33.53 3.02
1762 4151 1.069022 CAACACCTGCAAGTCGGAATG 60.069 52.381 0.00 0.00 0.00 2.67
1768 4157 1.009675 CGCACAACACCTGCAAGTC 60.010 57.895 0.00 0.00 34.00 3.01
1842 4231 8.865978 GGTACAAAAAGTTCACGATTTTCTTTT 58.134 29.630 0.00 0.00 39.12 2.27
1844 4233 7.540299 TGGTACAAAAAGTTCACGATTTTCTT 58.460 30.769 0.00 0.00 31.92 2.52
1845 4234 7.090953 TGGTACAAAAAGTTCACGATTTTCT 57.909 32.000 0.00 0.00 31.92 2.52
1911 4300 2.158534 TGGGCTGTAACACACAATTCCT 60.159 45.455 0.00 0.00 36.48 3.36
1980 4369 0.109272 TGCGGAAGTCGTCATCTGAC 60.109 55.000 0.07 0.07 41.72 3.51
2013 4402 9.515226 AAGAAGCTACCAGAATATGTGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
2019 4481 9.553064 AGAATTAAGAAGCTACCAGAATATGTG 57.447 33.333 0.00 0.00 0.00 3.21
2069 4531 8.871125 ACCGTAAGTTAGATGATGGAAGATTAT 58.129 33.333 0.00 0.00 0.00 1.28
2074 4536 4.508124 GCACCGTAAGTTAGATGATGGAAG 59.492 45.833 0.00 0.00 0.00 3.46
2076 4538 3.704566 AGCACCGTAAGTTAGATGATGGA 59.295 43.478 0.00 0.00 0.00 3.41
2078 4540 8.988064 ATATAAGCACCGTAAGTTAGATGATG 57.012 34.615 0.00 0.00 0.00 3.07
2115 5810 8.950210 ATGTTTCTACACAATCGAAAGATGAAT 58.050 29.630 0.00 0.00 43.51 2.57
2145 5840 8.726988 ACTTACGATGCACTTATGTAAAAACAT 58.273 29.630 0.00 0.00 0.00 2.71
2146 5841 8.090250 ACTTACGATGCACTTATGTAAAAACA 57.910 30.769 0.00 0.00 0.00 2.83
2147 5842 8.944212 AACTTACGATGCACTTATGTAAAAAC 57.056 30.769 0.00 0.00 0.00 2.43
2188 5885 7.308830 GCCAACAAATCATAGAAGTCTCACTTT 60.309 37.037 0.00 0.00 38.80 2.66
2274 5971 5.059161 TCAAATATCAGGGCATTCTTCTCG 58.941 41.667 0.00 0.00 0.00 4.04
2317 6014 0.249447 GGTGTGCACCCTTTTCTTGC 60.249 55.000 15.69 0.00 45.68 4.01
2640 6337 2.508439 AATACGTGGGCTCGTGCG 60.508 61.111 15.60 3.41 43.93 5.34
2683 6380 1.252904 GGACACACATGCCATTGCCT 61.253 55.000 0.00 0.00 36.33 4.75
2776 6473 1.593006 CGTGCTCAAGTTATTAGGCCG 59.407 52.381 0.00 0.00 0.00 6.13
2779 6476 3.508762 ACGTCGTGCTCAAGTTATTAGG 58.491 45.455 0.00 0.00 0.00 2.69
2924 6622 2.724977 TAACTCTCAACTCACTGCCG 57.275 50.000 0.00 0.00 0.00 5.69
3053 6756 4.794067 ACTATGGAGGTTTGTTCCCCTATT 59.206 41.667 0.00 0.00 33.62 1.73
3115 6818 0.181824 GATTTTGGCCCCCGCTACTA 59.818 55.000 0.00 0.00 34.44 1.82
3195 6899 2.348888 CCCGACAGGAGTAACGGCT 61.349 63.158 0.00 0.00 43.37 5.52
3216 6920 4.141367 TGTTGATTTGTGGGACCAGTCTAA 60.141 41.667 0.00 0.00 0.00 2.10
3225 6929 4.974645 AGACTAGTGTTGATTTGTGGGA 57.025 40.909 0.00 0.00 0.00 4.37
3252 6956 0.597637 CGAGTGAGGACAAAGTGCGT 60.598 55.000 0.00 0.00 0.00 5.24
3368 7072 1.210722 TGCATGCTACGTTCCCCAATA 59.789 47.619 20.33 0.00 0.00 1.90
3369 7073 0.034574 TGCATGCTACGTTCCCCAAT 60.035 50.000 20.33 0.00 0.00 3.16
3370 7074 0.250945 TTGCATGCTACGTTCCCCAA 60.251 50.000 20.33 0.00 0.00 4.12
3371 7075 0.034574 ATTGCATGCTACGTTCCCCA 60.035 50.000 20.33 0.00 0.00 4.96
3372 7076 1.102978 AATTGCATGCTACGTTCCCC 58.897 50.000 20.33 0.00 0.00 4.81
3373 7077 2.163412 TGAAATTGCATGCTACGTTCCC 59.837 45.455 20.33 1.47 0.00 3.97
3374 7078 3.485947 TGAAATTGCATGCTACGTTCC 57.514 42.857 20.33 2.94 0.00 3.62
3375 7079 5.820926 TTTTGAAATTGCATGCTACGTTC 57.179 34.783 20.33 17.52 0.00 3.95
3376 7080 6.783892 ATTTTTGAAATTGCATGCTACGTT 57.216 29.167 20.33 9.33 0.00 3.99
3377 7081 6.783892 AATTTTTGAAATTGCATGCTACGT 57.216 29.167 20.33 2.42 0.00 3.57
3378 7082 7.268872 GGAAAATTTTTGAAATTGCATGCTACG 59.731 33.333 20.33 0.00 0.00 3.51
3379 7083 8.291740 AGGAAAATTTTTGAAATTGCATGCTAC 58.708 29.630 20.33 6.26 0.00 3.58
3380 7084 8.393671 AGGAAAATTTTTGAAATTGCATGCTA 57.606 26.923 20.33 12.49 0.00 3.49
3381 7085 7.279750 AGGAAAATTTTTGAAATTGCATGCT 57.720 28.000 20.33 0.00 0.00 3.79
3382 7086 7.268872 CGTAGGAAAATTTTTGAAATTGCATGC 59.731 33.333 11.82 11.82 0.00 4.06
3383 7087 8.494347 TCGTAGGAAAATTTTTGAAATTGCATG 58.506 29.630 4.63 0.00 0.00 4.06
3384 7088 8.600449 TCGTAGGAAAATTTTTGAAATTGCAT 57.400 26.923 4.63 0.00 0.00 3.96
3385 7089 8.600449 ATCGTAGGAAAATTTTTGAAATTGCA 57.400 26.923 4.63 0.00 0.00 4.08
3386 7090 8.707839 TGATCGTAGGAAAATTTTTGAAATTGC 58.292 29.630 4.63 0.00 0.00 3.56
3388 7092 8.911662 CGTGATCGTAGGAAAATTTTTGAAATT 58.088 29.630 4.63 0.00 0.00 1.82
3389 7093 7.061789 GCGTGATCGTAGGAAAATTTTTGAAAT 59.938 33.333 4.63 0.00 39.49 2.17
3390 7094 6.361214 GCGTGATCGTAGGAAAATTTTTGAAA 59.639 34.615 4.63 0.00 39.49 2.69
3391 7095 5.854338 GCGTGATCGTAGGAAAATTTTTGAA 59.146 36.000 4.63 0.00 39.49 2.69
3392 7096 5.049336 TGCGTGATCGTAGGAAAATTTTTGA 60.049 36.000 4.63 0.00 39.49 2.69
3393 7097 5.150683 TGCGTGATCGTAGGAAAATTTTTG 58.849 37.500 4.63 0.00 39.49 2.44
3394 7098 5.365403 TGCGTGATCGTAGGAAAATTTTT 57.635 34.783 4.63 0.00 39.49 1.94
3395 7099 5.180492 TCTTGCGTGATCGTAGGAAAATTTT 59.820 36.000 2.28 2.28 35.34 1.82
3396 7100 4.693566 TCTTGCGTGATCGTAGGAAAATTT 59.306 37.500 0.00 0.00 35.34 1.82
3397 7101 4.250464 TCTTGCGTGATCGTAGGAAAATT 58.750 39.130 0.00 0.00 35.34 1.82
3398 7102 3.857052 TCTTGCGTGATCGTAGGAAAAT 58.143 40.909 0.00 0.00 35.34 1.82
3399 7103 3.306917 TCTTGCGTGATCGTAGGAAAA 57.693 42.857 0.00 0.00 35.34 2.29
3400 7104 3.130516 AGATCTTGCGTGATCGTAGGAAA 59.869 43.478 11.44 0.00 45.35 3.13
3401 7105 2.688446 AGATCTTGCGTGATCGTAGGAA 59.312 45.455 11.44 0.00 45.35 3.36
3402 7106 2.298610 AGATCTTGCGTGATCGTAGGA 58.701 47.619 11.44 0.00 45.35 2.94
3403 7107 2.783828 AGATCTTGCGTGATCGTAGG 57.216 50.000 11.44 0.00 45.35 3.18
3404 7108 5.289917 AGATAGATCTTGCGTGATCGTAG 57.710 43.478 0.00 0.00 45.35 3.51
3405 7109 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
3406 7110 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
3407 7111 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
3408 7112 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
3409 7113 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
3410 7114 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
3411 7115 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
3412 7116 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
3413 7117 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
3414 7118 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
3415 7119 7.068470 TGCTATGCATCTCCTAGATAGATCTTG 59.932 40.741 0.19 0.00 32.12 3.02
3416 7120 7.124721 TGCTATGCATCTCCTAGATAGATCTT 58.875 38.462 0.19 0.00 32.12 2.40
3417 7121 6.671605 TGCTATGCATCTCCTAGATAGATCT 58.328 40.000 0.19 0.00 32.12 2.75
3418 7122 6.957920 TGCTATGCATCTCCTAGATAGATC 57.042 41.667 0.19 0.00 32.12 2.75
3419 7123 7.564292 TCATTGCTATGCATCTCCTAGATAGAT 59.436 37.037 0.19 0.00 38.76 1.98
3420 7124 6.894103 TCATTGCTATGCATCTCCTAGATAGA 59.106 38.462 0.19 0.00 38.76 1.98
3421 7125 7.068470 TCTCATTGCTATGCATCTCCTAGATAG 59.932 40.741 0.19 0.00 38.76 2.08
3422 7126 6.894103 TCTCATTGCTATGCATCTCCTAGATA 59.106 38.462 0.19 0.00 38.76 1.98
3423 7127 5.720520 TCTCATTGCTATGCATCTCCTAGAT 59.279 40.000 0.19 0.00 38.76 1.98
3424 7128 5.082425 TCTCATTGCTATGCATCTCCTAGA 58.918 41.667 0.19 0.00 38.76 2.43
3425 7129 5.402997 TCTCATTGCTATGCATCTCCTAG 57.597 43.478 0.19 0.00 38.76 3.02
3426 7130 5.279859 CCTTCTCATTGCTATGCATCTCCTA 60.280 44.000 0.19 0.00 38.76 2.94
3427 7131 4.505215 CCTTCTCATTGCTATGCATCTCCT 60.505 45.833 0.19 0.00 38.76 3.69
3428 7132 3.752222 CCTTCTCATTGCTATGCATCTCC 59.248 47.826 0.19 0.00 38.76 3.71
3429 7133 3.752222 CCCTTCTCATTGCTATGCATCTC 59.248 47.826 0.19 0.00 38.76 2.75
3430 7134 3.498121 CCCCTTCTCATTGCTATGCATCT 60.498 47.826 0.19 0.00 38.76 2.90
3431 7135 2.818432 CCCCTTCTCATTGCTATGCATC 59.182 50.000 0.19 0.00 38.76 3.91
3432 7136 2.444388 TCCCCTTCTCATTGCTATGCAT 59.556 45.455 3.79 3.79 38.76 3.96
3433 7137 1.845791 TCCCCTTCTCATTGCTATGCA 59.154 47.619 3.00 0.00 36.47 3.96
3434 7138 2.105477 TCTCCCCTTCTCATTGCTATGC 59.895 50.000 3.00 0.00 0.00 3.14
3435 7139 3.390639 ACTCTCCCCTTCTCATTGCTATG 59.609 47.826 1.30 1.30 0.00 2.23
3436 7140 3.390639 CACTCTCCCCTTCTCATTGCTAT 59.609 47.826 0.00 0.00 0.00 2.97
3437 7141 2.768527 CACTCTCCCCTTCTCATTGCTA 59.231 50.000 0.00 0.00 0.00 3.49
3438 7142 1.558756 CACTCTCCCCTTCTCATTGCT 59.441 52.381 0.00 0.00 0.00 3.91
3439 7143 1.280421 ACACTCTCCCCTTCTCATTGC 59.720 52.381 0.00 0.00 0.00 3.56
3440 7144 2.304180 ACACACTCTCCCCTTCTCATTG 59.696 50.000 0.00 0.00 0.00 2.82
3441 7145 2.569404 GACACACTCTCCCCTTCTCATT 59.431 50.000 0.00 0.00 0.00 2.57
3442 7146 2.183679 GACACACTCTCCCCTTCTCAT 58.816 52.381 0.00 0.00 0.00 2.90
3443 7147 1.633774 GACACACTCTCCCCTTCTCA 58.366 55.000 0.00 0.00 0.00 3.27
3444 7148 0.899019 GGACACACTCTCCCCTTCTC 59.101 60.000 0.00 0.00 0.00 2.87
3445 7149 0.191064 TGGACACACTCTCCCCTTCT 59.809 55.000 0.00 0.00 0.00 2.85
3446 7150 0.321996 GTGGACACACTCTCCCCTTC 59.678 60.000 0.00 0.00 44.29 3.46
3447 7151 1.472662 CGTGGACACACTCTCCCCTT 61.473 60.000 3.12 0.00 45.50 3.95
3448 7152 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
3449 7153 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
3450 7154 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
3451 7155 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
3452 7156 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
3453 7157 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
3454 7158 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
3455 7159 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
3456 7160 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
3457 7161 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
3458 7162 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
3459 7163 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
3460 7164 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
3462 7166 0.731417 CAGTCTACGAGGGTACGTGG 59.269 60.000 0.00 0.00 46.02 4.94
3463 7167 1.730501 TCAGTCTACGAGGGTACGTG 58.269 55.000 0.00 0.00 46.02 4.49
3465 7169 2.477525 GCTTTCAGTCTACGAGGGTACG 60.478 54.545 0.00 0.00 39.31 3.67
3466 7170 2.477525 CGCTTTCAGTCTACGAGGGTAC 60.478 54.545 0.00 0.00 0.00 3.34
3467 7171 1.741706 CGCTTTCAGTCTACGAGGGTA 59.258 52.381 0.00 0.00 0.00 3.69
3468 7172 0.526662 CGCTTTCAGTCTACGAGGGT 59.473 55.000 0.00 0.00 0.00 4.34
3469 7173 0.179134 CCGCTTTCAGTCTACGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
3470 7174 0.809385 TCCGCTTTCAGTCTACGAGG 59.191 55.000 0.00 0.00 0.00 4.63
3471 7175 2.520979 CTTCCGCTTTCAGTCTACGAG 58.479 52.381 0.00 0.00 0.00 4.18
3472 7176 1.402456 GCTTCCGCTTTCAGTCTACGA 60.402 52.381 0.00 0.00 0.00 3.43
3473 7177 0.992802 GCTTCCGCTTTCAGTCTACG 59.007 55.000 0.00 0.00 0.00 3.51
3474 7178 0.992802 CGCTTCCGCTTTCAGTCTAC 59.007 55.000 0.00 0.00 0.00 2.59
3475 7179 0.601558 ACGCTTCCGCTTTCAGTCTA 59.398 50.000 0.00 0.00 38.22 2.59
3476 7180 0.249911 AACGCTTCCGCTTTCAGTCT 60.250 50.000 0.00 0.00 38.22 3.24
3477 7181 1.390463 CTAACGCTTCCGCTTTCAGTC 59.610 52.381 0.00 0.00 38.22 3.51
3478 7182 1.429463 CTAACGCTTCCGCTTTCAGT 58.571 50.000 0.00 0.00 38.22 3.41
3479 7183 0.721718 CCTAACGCTTCCGCTTTCAG 59.278 55.000 0.00 0.00 38.22 3.02
3480 7184 0.034337 ACCTAACGCTTCCGCTTTCA 59.966 50.000 0.00 0.00 38.22 2.69
3481 7185 1.154197 AACCTAACGCTTCCGCTTTC 58.846 50.000 0.00 0.00 38.22 2.62
3482 7186 2.460757 TAACCTAACGCTTCCGCTTT 57.539 45.000 0.00 0.00 38.22 3.51
3483 7187 2.071540 GTTAACCTAACGCTTCCGCTT 58.928 47.619 0.00 0.00 38.22 4.68
3484 7188 1.718396 GTTAACCTAACGCTTCCGCT 58.282 50.000 0.00 0.00 38.22 5.52
3493 7197 2.738314 ACATCAACCGCGTTAACCTAAC 59.262 45.455 4.92 0.00 35.37 2.34
3494 7198 3.042871 ACATCAACCGCGTTAACCTAA 57.957 42.857 4.92 0.00 0.00 2.69
3495 7199 2.747396 ACATCAACCGCGTTAACCTA 57.253 45.000 4.92 0.00 0.00 3.08
3496 7200 2.028748 ACTACATCAACCGCGTTAACCT 60.029 45.455 4.92 0.00 0.00 3.50
3497 7201 2.340337 ACTACATCAACCGCGTTAACC 58.660 47.619 4.92 0.00 0.00 2.85
3498 7202 2.027214 CGACTACATCAACCGCGTTAAC 59.973 50.000 4.92 0.00 0.00 2.01
3499 7203 2.095314 TCGACTACATCAACCGCGTTAA 60.095 45.455 4.92 0.00 0.00 2.01
3500 7204 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
3501 7205 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
3502 7206 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
3503 7207 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
3504 7208 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
3505 7209 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
3506 7210 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
3507 7211 4.802664 GAAGACGTTCGACTACATCAAC 57.197 45.455 0.00 0.00 0.00 3.18
3519 7223 0.365859 GTTGGATCGCGAAGACGTTC 59.634 55.000 15.24 4.43 41.98 3.95
3520 7224 1.012486 GGTTGGATCGCGAAGACGTT 61.012 55.000 15.24 0.00 41.98 3.99
3521 7225 1.445582 GGTTGGATCGCGAAGACGT 60.446 57.895 15.24 0.00 41.98 4.34
3522 7226 2.505498 CGGTTGGATCGCGAAGACG 61.505 63.158 15.24 8.74 42.93 4.18
3523 7227 0.527817 ATCGGTTGGATCGCGAAGAC 60.528 55.000 15.24 9.41 0.00 3.01
3524 7228 0.248907 GATCGGTTGGATCGCGAAGA 60.249 55.000 15.24 4.68 42.02 2.87
3525 7229 2.217112 GATCGGTTGGATCGCGAAG 58.783 57.895 15.24 0.00 42.02 3.79
3526 7230 4.412933 GATCGGTTGGATCGCGAA 57.587 55.556 15.24 0.00 42.02 4.70
3532 7236 2.104967 TCGGTACTTGATCGGTTGGAT 58.895 47.619 0.00 0.00 38.35 3.41
3533 7237 1.548081 TCGGTACTTGATCGGTTGGA 58.452 50.000 0.00 0.00 30.29 3.53
3534 7238 1.997606 GTTCGGTACTTGATCGGTTGG 59.002 52.381 0.00 0.00 30.29 3.77
3535 7239 1.652124 CGTTCGGTACTTGATCGGTTG 59.348 52.381 9.70 0.00 30.29 3.77
3536 7240 1.270550 ACGTTCGGTACTTGATCGGTT 59.729 47.619 17.26 2.38 33.92 4.44
3537 7241 0.883833 ACGTTCGGTACTTGATCGGT 59.116 50.000 17.26 0.00 33.92 4.69
3538 7242 2.830772 TACGTTCGGTACTTGATCGG 57.169 50.000 17.26 0.00 33.92 4.18
3539 7243 3.040795 CCATACGTTCGGTACTTGATCG 58.959 50.000 0.00 13.71 32.95 3.69
3540 7244 2.793232 GCCATACGTTCGGTACTTGATC 59.207 50.000 0.00 0.00 32.95 2.92
3541 7245 2.166870 TGCCATACGTTCGGTACTTGAT 59.833 45.455 0.00 0.00 32.95 2.57
3542 7246 1.545136 TGCCATACGTTCGGTACTTGA 59.455 47.619 0.00 0.00 32.95 3.02
3543 7247 1.657094 GTGCCATACGTTCGGTACTTG 59.343 52.381 14.29 0.00 35.26 3.16
3544 7248 1.404583 GGTGCCATACGTTCGGTACTT 60.405 52.381 18.83 0.00 37.94 2.24
3545 7249 0.174162 GGTGCCATACGTTCGGTACT 59.826 55.000 18.83 0.00 37.94 2.73
3546 7250 0.174162 AGGTGCCATACGTTCGGTAC 59.826 55.000 13.51 13.51 37.19 3.34
3547 7251 0.457035 GAGGTGCCATACGTTCGGTA 59.543 55.000 0.00 0.00 35.11 4.02
3548 7252 1.217244 GAGGTGCCATACGTTCGGT 59.783 57.895 0.00 0.00 0.00 4.69
3549 7253 1.520787 GGAGGTGCCATACGTTCGG 60.521 63.158 0.00 0.00 36.34 4.30
3550 7254 1.876714 CGGAGGTGCCATACGTTCG 60.877 63.158 0.00 0.00 39.50 3.95
3551 7255 0.527817 CTCGGAGGTGCCATACGTTC 60.528 60.000 0.00 0.00 35.94 3.95
3552 7256 1.255667 ACTCGGAGGTGCCATACGTT 61.256 55.000 10.23 0.00 35.94 3.99
3553 7257 1.255667 AACTCGGAGGTGCCATACGT 61.256 55.000 10.23 0.00 35.94 3.57
3554 7258 0.527817 GAACTCGGAGGTGCCATACG 60.528 60.000 10.23 0.00 35.94 3.06
3555 7259 0.824759 AGAACTCGGAGGTGCCATAC 59.175 55.000 10.23 0.00 35.94 2.39
3556 7260 0.824109 CAGAACTCGGAGGTGCCATA 59.176 55.000 10.23 0.00 35.94 2.74
3557 7261 1.599047 CAGAACTCGGAGGTGCCAT 59.401 57.895 10.23 0.00 35.94 4.40
3558 7262 3.059982 CAGAACTCGGAGGTGCCA 58.940 61.111 10.23 0.00 35.94 4.92
3559 7263 2.435059 GCAGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
3560 7264 2.029844 GTGCAGAACTCGGAGGTGC 61.030 63.158 17.45 17.45 34.62 5.01
3561 7265 0.036952 ATGTGCAGAACTCGGAGGTG 60.037 55.000 10.23 5.07 0.00 4.00
3562 7266 0.036952 CATGTGCAGAACTCGGAGGT 60.037 55.000 10.23 1.51 0.00 3.85
3563 7267 0.036952 ACATGTGCAGAACTCGGAGG 60.037 55.000 10.23 0.00 0.00 4.30
3564 7268 1.728971 GAACATGTGCAGAACTCGGAG 59.271 52.381 0.00 2.83 0.00 4.63
3565 7269 1.069978 TGAACATGTGCAGAACTCGGA 59.930 47.619 1.03 0.00 0.00 4.55
3566 7270 1.462283 CTGAACATGTGCAGAACTCGG 59.538 52.381 27.45 6.93 34.06 4.63
3567 7271 2.869358 CTGAACATGTGCAGAACTCG 57.131 50.000 27.45 0.69 34.06 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.