Multiple sequence alignment - TraesCS5D01G521600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G521600 chr5D 100.000 5117 0 0 1 5117 542588766 542593882 0.000000e+00 9450.0
1 TraesCS5D01G521600 chr5D 78.810 538 90 17 19 544 462741540 462742065 1.760000e-89 340.0
2 TraesCS5D01G521600 chr5D 79.115 407 80 3 5 410 336337072 336337474 5.050000e-70 276.0
3 TraesCS5D01G521600 chr5D 78.624 407 82 3 5 410 336241333 336240931 1.090000e-66 265.0
4 TraesCS5D01G521600 chr5D 88.571 70 6 2 448 516 318099839 318099771 3.280000e-12 84.2
5 TraesCS5D01G521600 chr5B 93.336 2176 88 33 2862 5015 684229783 684231923 0.000000e+00 3162.0
6 TraesCS5D01G521600 chr5B 94.290 1261 41 11 628 1888 684227582 684228811 0.000000e+00 1901.0
7 TraesCS5D01G521600 chr5B 95.169 890 28 8 1880 2758 684228839 684229724 0.000000e+00 1391.0
8 TraesCS5D01G521600 chr5B 88.220 382 44 1 1 382 684227171 684227551 6.040000e-124 455.0
9 TraesCS5D01G521600 chr4A 93.455 1864 86 17 3050 4892 626440894 626439046 0.000000e+00 2734.0
10 TraesCS5D01G521600 chr4A 93.589 1279 51 11 625 1888 626443763 626442501 0.000000e+00 1879.0
11 TraesCS5D01G521600 chr4A 93.345 1187 39 10 1886 3058 626442466 626441306 0.000000e+00 1718.0
12 TraesCS5D01G521600 chr4A 93.204 103 7 0 5015 5117 631636777 631636675 8.870000e-33 152.0
13 TraesCS5D01G521600 chr3D 82.447 376 60 5 38 410 48793202 48792830 1.780000e-84 324.0
14 TraesCS5D01G521600 chr3D 78.426 394 76 7 21 410 491644402 491644790 1.100000e-61 248.0
15 TraesCS5D01G521600 chr4D 79.545 396 74 6 14 406 360487638 360487247 5.050000e-70 276.0
16 TraesCS5D01G521600 chr4D 79.944 359 67 5 54 410 89533522 89533877 5.080000e-65 259.0
17 TraesCS5D01G521600 chr3A 78.827 392 74 8 14 402 673890999 673890614 6.570000e-64 255.0
18 TraesCS5D01G521600 chr7B 80.592 304 39 9 1120 1406 708061938 708062238 3.100000e-52 217.0
19 TraesCS5D01G521600 chr7B 100.000 32 0 0 449 480 100005268 100005299 5.530000e-05 60.2
20 TraesCS5D01G521600 chr2D 96.040 101 4 0 5017 5117 32193840 32193740 1.140000e-36 165.0
21 TraesCS5D01G521600 chr2D 74.757 309 59 14 3720 4023 509230543 509230837 2.500000e-23 121.0
22 TraesCS5D01G521600 chr2D 73.592 284 51 16 330 608 308469068 308469332 2.540000e-13 87.9
23 TraesCS5D01G521600 chr1D 95.050 101 5 0 5017 5117 55618633 55618533 5.300000e-35 159.0
24 TraesCS5D01G521600 chr7D 93.069 101 7 0 5017 5117 523191666 523191766 1.150000e-31 148.0
25 TraesCS5D01G521600 chr5A 93.069 101 7 0 5017 5117 230677485 230677385 1.150000e-31 148.0
26 TraesCS5D01G521600 chr2A 82.353 153 25 2 3720 3871 653001381 653001532 1.160000e-26 132.0
27 TraesCS5D01G521600 chr2A 84.058 69 10 1 16 83 589662674 589662742 1.190000e-06 65.8
28 TraesCS5D01G521600 chr2B 77.578 223 42 6 3720 3941 598561981 598562196 1.500000e-25 128.0
29 TraesCS5D01G521600 chr2B 100.000 31 0 0 448 478 157690910 157690880 1.990000e-04 58.4
30 TraesCS5D01G521600 chr6D 86.667 60 8 0 1784 1843 336367195 336367254 3.310000e-07 67.6
31 TraesCS5D01G521600 chr1A 94.737 38 2 0 465 502 107469462 107469499 5.530000e-05 60.2
32 TraesCS5D01G521600 chr1B 92.105 38 3 0 465 502 161987752 161987789 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G521600 chr5D 542588766 542593882 5116 False 9450.000000 9450 100.00000 1 5117 1 chr5D.!!$F3 5116
1 TraesCS5D01G521600 chr5D 462741540 462742065 525 False 340.000000 340 78.81000 19 544 1 chr5D.!!$F2 525
2 TraesCS5D01G521600 chr5B 684227171 684231923 4752 False 1727.250000 3162 92.75375 1 5015 4 chr5B.!!$F1 5014
3 TraesCS5D01G521600 chr4A 626439046 626443763 4717 True 2110.333333 2734 93.46300 625 4892 3 chr4A.!!$R2 4267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 398 0.105039 GGCTCCTCCAACTCATACGG 59.895 60.0 0.00 0.0 34.01 4.02 F
397 399 0.105039 GCTCCTCCAACTCATACGGG 59.895 60.0 0.00 0.0 0.00 5.28 F
456 458 0.108424 AGTGAAGTCAGATCCGCTGC 60.108 55.0 0.00 0.0 44.52 5.25 F
522 524 0.328592 AGCGGAGGAGAGTACAGTGA 59.671 55.0 0.00 0.0 0.00 3.41 F
2284 2350 0.693049 TTCTGGTGCTCCCTTTCCTC 59.307 55.0 1.59 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1542 0.749454 GGGACCTAAGGTAGACGCGA 60.749 60.000 15.93 0.0 35.25 5.87 R
1728 1746 2.847234 AAGCCCCTCCACGTGTCA 60.847 61.111 15.65 0.0 0.00 3.58 R
2141 2204 3.061848 GCCCACATCACCAACGGG 61.062 66.667 0.00 0.0 40.11 5.28 R
2304 2371 3.270027 TCGGTCTGGTATCATGCAAAAG 58.730 45.455 0.00 0.0 0.00 2.27 R
4143 4658 1.135024 CCGCACGTAGGGCTAAACTAA 60.135 52.381 1.56 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.661866 GCACGCGTGTTCCTCTGT 60.662 61.111 36.80 0.00 0.00 3.41
34 35 1.143183 ACGCGTGTTCCTCTGTTGT 59.857 52.632 12.93 0.00 0.00 3.32
106 107 1.152881 CCCTGCATTAGCCACCTCC 60.153 63.158 0.00 0.00 41.13 4.30
111 112 3.081409 ATTAGCCACCTCCGCCGT 61.081 61.111 0.00 0.00 0.00 5.68
181 182 1.961277 CAAGGCGGACACACCAGTC 60.961 63.158 0.00 0.00 38.90 3.51
203 204 3.291584 CTGGTAGCACTCATACTCTGGA 58.708 50.000 0.00 0.00 0.00 3.86
209 210 1.678627 CACTCATACTCTGGAGGACCG 59.321 57.143 2.58 0.00 39.42 4.79
264 266 2.311688 GACCGCGATGATCCAACCCT 62.312 60.000 8.23 0.00 0.00 4.34
289 291 1.810606 ATCCGAGCTTCCGATGCGAT 61.811 55.000 0.00 0.00 35.28 4.58
292 294 0.871592 CGAGCTTCCGATGCGATGAA 60.872 55.000 0.00 0.00 35.28 2.57
312 314 2.169789 CAATGGACTCGCGCTGGAG 61.170 63.158 5.56 8.44 39.97 3.86
315 317 4.200283 GGACTCGCGCTGGAGAGG 62.200 72.222 17.68 0.00 43.52 3.69
353 355 3.068691 TGTCCTCTCGGAAGCGGG 61.069 66.667 0.00 0.00 42.08 6.13
354 356 2.754658 GTCCTCTCGGAAGCGGGA 60.755 66.667 0.00 0.00 42.08 5.14
366 368 3.869272 GCGGGAGAGTGCAATGCG 61.869 66.667 0.00 0.00 0.00 4.73
396 398 0.105039 GGCTCCTCCAACTCATACGG 59.895 60.000 0.00 0.00 34.01 4.02
397 399 0.105039 GCTCCTCCAACTCATACGGG 59.895 60.000 0.00 0.00 0.00 5.28
412 414 2.926242 GGGACGACACCCCAGGAA 60.926 66.667 0.00 0.00 43.81 3.36
413 415 2.663196 GGACGACACCCCAGGAAG 59.337 66.667 0.00 0.00 0.00 3.46
415 417 1.004918 GACGACACCCCAGGAAGTG 60.005 63.158 7.80 7.80 39.93 3.16
453 455 4.569761 TGTATAGTGAAGTCAGATCCGC 57.430 45.455 0.00 0.00 0.00 5.54
454 456 4.207955 TGTATAGTGAAGTCAGATCCGCT 58.792 43.478 0.00 0.00 0.00 5.52
455 457 3.724508 ATAGTGAAGTCAGATCCGCTG 57.275 47.619 0.00 0.00 46.31 5.18
456 458 0.108424 AGTGAAGTCAGATCCGCTGC 60.108 55.000 0.00 0.00 44.52 5.25
457 459 1.086634 GTGAAGTCAGATCCGCTGCC 61.087 60.000 0.00 0.00 44.52 4.85
458 460 1.260538 TGAAGTCAGATCCGCTGCCT 61.261 55.000 0.00 0.00 44.52 4.75
459 461 0.809241 GAAGTCAGATCCGCTGCCTG 60.809 60.000 0.00 0.00 44.52 4.85
460 462 2.866085 AAGTCAGATCCGCTGCCTGC 62.866 60.000 0.00 0.00 44.52 4.85
461 463 4.166888 TCAGATCCGCTGCCTGCC 62.167 66.667 0.00 0.00 44.52 4.85
462 464 4.478371 CAGATCCGCTGCCTGCCA 62.478 66.667 0.00 0.00 37.90 4.92
463 465 3.486685 AGATCCGCTGCCTGCCAT 61.487 61.111 0.00 0.00 38.78 4.40
464 466 3.285215 GATCCGCTGCCTGCCATG 61.285 66.667 0.00 0.00 38.78 3.66
470 472 3.515286 CTGCCTGCCATGCCGAAG 61.515 66.667 0.00 0.00 0.00 3.79
471 473 3.982316 CTGCCTGCCATGCCGAAGA 62.982 63.158 0.00 0.00 0.00 2.87
472 474 2.751436 GCCTGCCATGCCGAAGAA 60.751 61.111 0.00 0.00 0.00 2.52
473 475 2.768492 GCCTGCCATGCCGAAGAAG 61.768 63.158 0.00 0.00 0.00 2.85
474 476 2.117156 CCTGCCATGCCGAAGAAGG 61.117 63.158 0.00 0.00 0.00 3.46
483 485 4.814294 CGAAGAAGGCCGGACGGG 62.814 72.222 5.05 3.74 39.58 5.28
484 486 3.387947 GAAGAAGGCCGGACGGGA 61.388 66.667 5.05 0.00 38.47 5.14
485 487 3.372554 GAAGAAGGCCGGACGGGAG 62.373 68.421 5.05 0.00 38.47 4.30
493 495 4.760047 CGGACGGGAGCTTGGGTG 62.760 72.222 0.00 0.00 0.00 4.61
494 496 4.410400 GGACGGGAGCTTGGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
498 500 3.712907 GGGAGCTTGGGTGGCGTA 61.713 66.667 0.00 0.00 34.52 4.42
499 501 2.125106 GGAGCTTGGGTGGCGTAG 60.125 66.667 0.00 0.00 34.52 3.51
500 502 2.125106 GAGCTTGGGTGGCGTAGG 60.125 66.667 0.00 0.00 34.52 3.18
501 503 3.682292 GAGCTTGGGTGGCGTAGGG 62.682 68.421 0.00 0.00 34.52 3.53
502 504 3.712907 GCTTGGGTGGCGTAGGGA 61.713 66.667 0.00 0.00 0.00 4.20
503 505 3.074281 CTTGGGTGGCGTAGGGAA 58.926 61.111 0.00 0.00 0.00 3.97
504 506 1.078426 CTTGGGTGGCGTAGGGAAG 60.078 63.158 0.00 0.00 0.00 3.46
505 507 3.262448 TTGGGTGGCGTAGGGAAGC 62.262 63.158 0.00 0.00 0.00 3.86
506 508 4.832608 GGGTGGCGTAGGGAAGCG 62.833 72.222 0.00 0.00 0.00 4.68
507 509 4.832608 GGTGGCGTAGGGAAGCGG 62.833 72.222 0.00 0.00 0.00 5.52
508 510 3.766691 GTGGCGTAGGGAAGCGGA 61.767 66.667 0.00 0.00 0.00 5.54
509 511 3.458163 TGGCGTAGGGAAGCGGAG 61.458 66.667 0.00 0.00 0.00 4.63
510 512 4.222847 GGCGTAGGGAAGCGGAGG 62.223 72.222 0.00 0.00 0.00 4.30
511 513 3.145551 GCGTAGGGAAGCGGAGGA 61.146 66.667 0.00 0.00 0.00 3.71
512 514 3.121019 CGTAGGGAAGCGGAGGAG 58.879 66.667 0.00 0.00 0.00 3.69
513 515 1.453379 CGTAGGGAAGCGGAGGAGA 60.453 63.158 0.00 0.00 0.00 3.71
514 516 1.448922 CGTAGGGAAGCGGAGGAGAG 61.449 65.000 0.00 0.00 0.00 3.20
515 517 0.396001 GTAGGGAAGCGGAGGAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
516 518 1.133853 GTAGGGAAGCGGAGGAGAGTA 60.134 57.143 0.00 0.00 0.00 2.59
517 519 0.396001 AGGGAAGCGGAGGAGAGTAC 60.396 60.000 0.00 0.00 0.00 2.73
518 520 0.683504 GGGAAGCGGAGGAGAGTACA 60.684 60.000 0.00 0.00 0.00 2.90
519 521 0.741915 GGAAGCGGAGGAGAGTACAG 59.258 60.000 0.00 0.00 0.00 2.74
520 522 1.465794 GAAGCGGAGGAGAGTACAGT 58.534 55.000 0.00 0.00 0.00 3.55
521 523 1.133407 GAAGCGGAGGAGAGTACAGTG 59.867 57.143 0.00 0.00 0.00 3.66
522 524 0.328592 AGCGGAGGAGAGTACAGTGA 59.671 55.000 0.00 0.00 0.00 3.41
523 525 1.174783 GCGGAGGAGAGTACAGTGAA 58.825 55.000 0.00 0.00 0.00 3.18
524 526 1.133407 GCGGAGGAGAGTACAGTGAAG 59.867 57.143 0.00 0.00 0.00 3.02
525 527 2.438411 CGGAGGAGAGTACAGTGAAGT 58.562 52.381 0.00 0.00 0.00 3.01
526 528 2.162608 CGGAGGAGAGTACAGTGAAGTG 59.837 54.545 0.00 0.00 0.00 3.16
527 529 3.422796 GGAGGAGAGTACAGTGAAGTGA 58.577 50.000 0.00 0.00 0.00 3.41
528 530 3.191791 GGAGGAGAGTACAGTGAAGTGAC 59.808 52.174 0.00 0.00 0.00 3.67
529 531 4.076394 GAGGAGAGTACAGTGAAGTGACT 58.924 47.826 0.00 0.00 0.00 3.41
530 532 5.244189 AGGAGAGTACAGTGAAGTGACTA 57.756 43.478 0.00 0.00 0.00 2.59
531 533 5.250200 AGGAGAGTACAGTGAAGTGACTAG 58.750 45.833 0.00 0.00 0.00 2.57
532 534 4.396790 GGAGAGTACAGTGAAGTGACTAGG 59.603 50.000 0.00 0.00 0.00 3.02
533 535 5.244189 AGAGTACAGTGAAGTGACTAGGA 57.756 43.478 0.00 0.00 0.00 2.94
534 536 5.822204 AGAGTACAGTGAAGTGACTAGGAT 58.178 41.667 0.00 0.00 0.00 3.24
535 537 6.249951 AGAGTACAGTGAAGTGACTAGGATT 58.750 40.000 0.00 0.00 0.00 3.01
536 538 6.722129 AGAGTACAGTGAAGTGACTAGGATTT 59.278 38.462 0.00 0.00 0.00 2.17
537 539 7.233757 AGAGTACAGTGAAGTGACTAGGATTTT 59.766 37.037 0.00 0.00 0.00 1.82
538 540 7.155328 AGTACAGTGAAGTGACTAGGATTTTG 58.845 38.462 0.00 0.00 0.00 2.44
539 541 5.930135 ACAGTGAAGTGACTAGGATTTTGT 58.070 37.500 0.00 0.00 0.00 2.83
540 542 5.992217 ACAGTGAAGTGACTAGGATTTTGTC 59.008 40.000 0.00 0.00 0.00 3.18
541 543 6.183361 ACAGTGAAGTGACTAGGATTTTGTCT 60.183 38.462 0.00 0.00 0.00 3.41
542 544 6.146837 CAGTGAAGTGACTAGGATTTTGTCTG 59.853 42.308 0.00 0.00 0.00 3.51
543 545 5.409826 GTGAAGTGACTAGGATTTTGTCTGG 59.590 44.000 0.00 0.00 0.00 3.86
544 546 5.306937 TGAAGTGACTAGGATTTTGTCTGGA 59.693 40.000 0.00 0.00 0.00 3.86
545 547 5.825593 AGTGACTAGGATTTTGTCTGGAA 57.174 39.130 0.00 0.00 0.00 3.53
546 548 6.187727 AGTGACTAGGATTTTGTCTGGAAA 57.812 37.500 0.00 0.00 0.00 3.13
547 549 6.601332 AGTGACTAGGATTTTGTCTGGAAAA 58.399 36.000 0.00 0.00 0.00 2.29
548 550 7.234355 AGTGACTAGGATTTTGTCTGGAAAAT 58.766 34.615 0.00 0.00 38.07 1.82
549 551 7.175641 AGTGACTAGGATTTTGTCTGGAAAATG 59.824 37.037 0.00 0.00 36.00 2.32
550 552 7.174946 GTGACTAGGATTTTGTCTGGAAAATGA 59.825 37.037 0.00 0.00 36.00 2.57
551 553 7.723616 TGACTAGGATTTTGTCTGGAAAATGAA 59.276 33.333 0.00 0.00 36.00 2.57
552 554 7.886338 ACTAGGATTTTGTCTGGAAAATGAAC 58.114 34.615 0.00 0.00 36.00 3.18
553 555 5.772521 AGGATTTTGTCTGGAAAATGAACG 58.227 37.500 0.00 0.00 36.00 3.95
554 556 5.534654 AGGATTTTGTCTGGAAAATGAACGA 59.465 36.000 0.00 0.00 36.00 3.85
555 557 5.858581 GGATTTTGTCTGGAAAATGAACGAG 59.141 40.000 0.00 0.00 36.00 4.18
556 558 6.293955 GGATTTTGTCTGGAAAATGAACGAGA 60.294 38.462 0.00 0.00 36.00 4.04
557 559 6.443934 TTTTGTCTGGAAAATGAACGAGAA 57.556 33.333 0.00 0.00 0.00 2.87
558 560 5.673337 TTGTCTGGAAAATGAACGAGAAG 57.327 39.130 0.00 0.00 0.00 2.85
559 561 4.956085 TGTCTGGAAAATGAACGAGAAGA 58.044 39.130 0.00 0.00 0.00 2.87
560 562 5.364778 TGTCTGGAAAATGAACGAGAAGAA 58.635 37.500 0.00 0.00 0.00 2.52
561 563 5.997746 TGTCTGGAAAATGAACGAGAAGAAT 59.002 36.000 0.00 0.00 0.00 2.40
562 564 7.158697 TGTCTGGAAAATGAACGAGAAGAATA 58.841 34.615 0.00 0.00 0.00 1.75
563 565 7.824289 TGTCTGGAAAATGAACGAGAAGAATAT 59.176 33.333 0.00 0.00 0.00 1.28
564 566 9.314321 GTCTGGAAAATGAACGAGAAGAATATA 57.686 33.333 0.00 0.00 0.00 0.86
587 589 4.660611 TAGGGTCGGGTGGGCCAA 62.661 66.667 8.40 0.00 36.17 4.52
601 603 2.509336 CCAACGTGGGCTAGCTCG 60.509 66.667 15.72 18.07 32.67 5.03
602 604 2.509336 CAACGTGGGCTAGCTCGG 60.509 66.667 15.72 9.38 0.00 4.63
603 605 2.678934 AACGTGGGCTAGCTCGGA 60.679 61.111 15.72 0.00 0.00 4.55
604 606 3.003113 AACGTGGGCTAGCTCGGAC 62.003 63.158 15.72 4.71 0.00 4.79
605 607 4.554363 CGTGGGCTAGCTCGGACG 62.554 72.222 15.72 13.90 0.00 4.79
606 608 3.450115 GTGGGCTAGCTCGGACGT 61.450 66.667 15.72 0.00 0.00 4.34
607 609 3.449227 TGGGCTAGCTCGGACGTG 61.449 66.667 15.72 0.00 0.00 4.49
608 610 4.208686 GGGCTAGCTCGGACGTGG 62.209 72.222 15.72 0.00 0.00 4.94
609 611 3.450115 GGCTAGCTCGGACGTGGT 61.450 66.667 15.72 3.99 0.00 4.16
610 612 2.102553 GCTAGCTCGGACGTGGTC 59.897 66.667 7.70 0.00 0.00 4.02
619 621 4.736896 GACGTGGTCCGCCCAGAC 62.737 72.222 0.00 0.00 46.45 3.51
622 624 4.309950 GTGGTCCGCCCAGACGTT 62.310 66.667 0.00 0.00 46.45 3.99
623 625 3.998672 TGGTCCGCCCAGACGTTC 61.999 66.667 0.00 0.00 38.72 3.95
682 684 1.792006 GGCGGCAGTGGTATATGTAC 58.208 55.000 3.07 0.00 0.00 2.90
752 754 1.334054 GGTAACGCGTGTGTACTGAG 58.666 55.000 14.98 0.00 0.00 3.35
786 789 2.198406 GTCTGCGCGGTCACATTTATA 58.802 47.619 17.37 0.00 0.00 0.98
787 790 2.218759 GTCTGCGCGGTCACATTTATAG 59.781 50.000 17.37 0.00 0.00 1.31
789 792 2.198406 TGCGCGGTCACATTTATAGAC 58.802 47.619 8.83 0.00 0.00 2.59
790 793 1.189446 GCGCGGTCACATTTATAGACG 59.811 52.381 8.83 0.00 33.18 4.18
791 794 1.784856 CGCGGTCACATTTATAGACGG 59.215 52.381 0.00 0.00 36.19 4.79
793 796 3.050619 GCGGTCACATTTATAGACGGAG 58.949 50.000 0.00 0.00 35.42 4.63
794 797 3.050619 CGGTCACATTTATAGACGGAGC 58.949 50.000 0.00 0.00 35.42 4.70
795 798 3.490249 CGGTCACATTTATAGACGGAGCA 60.490 47.826 0.00 0.00 35.42 4.26
798 801 4.270325 GTCACATTTATAGACGGAGCAACC 59.730 45.833 0.00 0.00 0.00 3.77
799 802 4.081365 TCACATTTATAGACGGAGCAACCA 60.081 41.667 1.20 0.00 38.90 3.67
883 898 3.141488 ATTCGTCGCTCCCTCGCT 61.141 61.111 0.00 0.00 0.00 4.93
1197 1215 4.767255 GTGCTCTGCCTGGGTCGG 62.767 72.222 0.00 0.00 0.00 4.79
1401 1419 4.221422 GTCCCCATCGCGCTGCTA 62.221 66.667 5.56 0.00 0.00 3.49
1611 1629 0.955428 TGCACATCCCGCTCAACTTC 60.955 55.000 0.00 0.00 0.00 3.01
1707 1725 1.517257 CTTCCTGCTCGCCTACGTG 60.517 63.158 0.00 0.00 41.18 4.49
2141 2204 1.082038 ATCGCATCGATCGACCGAC 60.082 57.895 31.82 17.57 43.45 4.79
2177 2240 2.221055 GGCGAGAGGTTGTTATATTGCG 59.779 50.000 0.00 0.00 0.00 4.85
2276 2342 2.227388 CTCACACATTTTCTGGTGCTCC 59.773 50.000 0.00 0.00 38.57 4.70
2284 2350 0.693049 TTCTGGTGCTCCCTTTCCTC 59.307 55.000 1.59 0.00 0.00 3.71
2285 2351 1.078848 CTGGTGCTCCCTTTCCTCG 60.079 63.158 1.59 0.00 0.00 4.63
2319 2386 4.701651 CACCTTCTCTTTTGCATGATACCA 59.298 41.667 0.00 0.00 0.00 3.25
2378 2445 7.072177 TGATTTACGAGACCAAGCTTAATTG 57.928 36.000 0.00 0.00 0.00 2.32
2427 2494 2.084546 GGGTCACTTTGTACCATCTGC 58.915 52.381 0.00 0.00 37.51 4.26
2801 2879 2.979676 TTGAGCTTGGGCGTGCTG 60.980 61.111 2.42 0.00 44.37 4.41
2826 2904 8.328758 TGCCTAGATATTTTCCTCTCTTTTCAA 58.671 33.333 0.00 0.00 0.00 2.69
2883 2971 5.825679 TCAATTTGGGTACATACTGCATACC 59.174 40.000 5.07 5.07 38.12 2.73
2990 3082 7.415095 CGGAATATTTGGACAGAATTAACTGCA 60.415 37.037 0.00 0.00 41.06 4.41
3032 3124 8.631480 AAAAGGAAAAACTGACGTATATTCCT 57.369 30.769 10.14 10.14 45.22 3.36
3057 3569 0.307760 CAAAAGACACACTCCCACGC 59.692 55.000 0.00 0.00 0.00 5.34
3062 3574 1.228769 ACACACTCCCACGCTCCTA 60.229 57.895 0.00 0.00 0.00 2.94
3138 3650 4.456566 GGTAAAATAGTGCGGGTGAAAAGA 59.543 41.667 0.00 0.00 0.00 2.52
3142 3654 5.813080 AATAGTGCGGGTGAAAAGATTAC 57.187 39.130 0.00 0.00 0.00 1.89
3189 3701 1.404035 AGAAACGACAAGGTTTGTGGC 59.596 47.619 0.00 0.00 45.52 5.01
3225 3740 4.037327 GCTTGCTTTCTTCTTCTTCCACTT 59.963 41.667 0.00 0.00 0.00 3.16
3397 3912 1.814248 GCCGGAAAAGACAAGACCAGT 60.814 52.381 5.05 0.00 0.00 4.00
3403 3918 4.445019 GGAAAAGACAAGACCAGTTCCTCT 60.445 45.833 0.00 0.00 32.14 3.69
3434 3949 1.536709 GGCACTGTTTGTTTCTGCAGG 60.537 52.381 15.13 0.00 33.62 4.85
3485 4000 2.964740 TCGATCTTGTTGAGCTTGAGG 58.035 47.619 0.00 0.00 0.00 3.86
3702 4217 2.280592 GAGCCGTCGGTGGTGTTT 60.281 61.111 13.94 0.00 0.00 2.83
4135 4650 1.735559 CGACCCGTTCCTTTCGGTC 60.736 63.158 3.78 0.00 45.63 4.79
4143 4658 0.754472 TTCCTTTCGGTCGAACCACT 59.246 50.000 5.22 0.00 38.47 4.00
4186 4701 1.006832 ATCGCGGTGACATGCTAAAC 58.993 50.000 6.13 0.00 0.00 2.01
4210 4727 0.464554 GCCAGACTAGCCATTCCACC 60.465 60.000 0.00 0.00 0.00 4.61
4216 4733 1.342674 ACTAGCCATTCCACCCGTAGA 60.343 52.381 0.00 0.00 0.00 2.59
4266 4785 3.879892 GCTGGCTAGCTTTAGTTATTGCT 59.120 43.478 15.78 0.00 46.57 3.91
4367 4892 0.604578 TTGCTGCTTGGAGAAATGGC 59.395 50.000 0.00 0.00 0.00 4.40
4451 4980 1.944709 ACGCACTTCCTTTTGTGTACC 59.055 47.619 0.00 0.00 34.71 3.34
4457 4986 4.213482 CACTTCCTTTTGTGTACCAGCTAC 59.787 45.833 0.00 0.00 0.00 3.58
4553 5082 0.244721 GGAACCTTTGCATCTGCCAC 59.755 55.000 0.00 0.00 41.18 5.01
4585 5114 2.535984 CGCATACGAGAAAGTTGGCTAG 59.464 50.000 0.00 0.00 43.93 3.42
4593 5122 7.636150 ACGAGAAAGTTGGCTAGTATAGTAA 57.364 36.000 0.00 0.00 41.93 2.24
4594 5123 7.705214 ACGAGAAAGTTGGCTAGTATAGTAAG 58.295 38.462 0.00 0.00 41.93 2.34
4595 5124 7.338957 ACGAGAAAGTTGGCTAGTATAGTAAGT 59.661 37.037 0.00 0.00 41.93 2.24
4596 5125 8.189460 CGAGAAAGTTGGCTAGTATAGTAAGTT 58.811 37.037 0.00 0.00 41.93 2.66
4597 5126 9.303537 GAGAAAGTTGGCTAGTATAGTAAGTTG 57.696 37.037 0.00 0.00 41.93 3.16
4598 5127 8.813951 AGAAAGTTGGCTAGTATAGTAAGTTGT 58.186 33.333 0.00 0.00 41.93 3.32
4599 5128 8.773404 AAAGTTGGCTAGTATAGTAAGTTGTG 57.227 34.615 0.00 0.00 41.93 3.33
4650 5179 0.873743 GAAGGATCGAGGAGCTTGCG 60.874 60.000 0.00 0.00 0.00 4.85
4752 5287 1.202940 AGAAAGAGGGAAGCGGCTTTT 60.203 47.619 17.51 5.72 31.30 2.27
4892 5428 4.222145 ACCGTCTTTAGAGCATGGTTAAGA 59.778 41.667 0.00 6.43 0.00 2.10
4904 5440 4.627035 GCATGGTTAAGAATGCTTTTGGTC 59.373 41.667 12.85 0.00 44.64 4.02
4913 5449 2.435372 TGCTTTTGGTCACCTCAACT 57.565 45.000 0.00 0.00 0.00 3.16
4956 5492 1.339438 GGCTCATTTGAGTCTGGCTGA 60.339 52.381 9.21 0.00 43.13 4.26
4958 5494 2.354503 GCTCATTTGAGTCTGGCTGAGA 60.355 50.000 9.21 0.00 43.85 3.27
4968 5504 3.323403 AGTCTGGCTGAGATAATGTAGGC 59.677 47.826 0.00 0.00 36.39 3.93
4975 5511 5.008118 GGCTGAGATAATGTAGGCTGAAAAC 59.992 44.000 0.00 0.00 33.44 2.43
4991 5527 6.088824 GCTGAAAACCATGTTCTGTAGATTG 58.911 40.000 0.00 0.00 0.00 2.67
4996 5532 7.581213 AAACCATGTTCTGTAGATTGTTTGA 57.419 32.000 0.00 0.00 0.00 2.69
5001 5537 6.631971 TGTTCTGTAGATTGTTTGATTGCA 57.368 33.333 0.00 0.00 0.00 4.08
5004 5540 6.822667 TCTGTAGATTGTTTGATTGCATGT 57.177 33.333 0.00 0.00 0.00 3.21
5005 5541 7.920160 TCTGTAGATTGTTTGATTGCATGTA 57.080 32.000 0.00 0.00 0.00 2.29
5018 5554 9.593134 TTTGATTGCATGTATATGTTTTTACCC 57.407 29.630 1.14 0.00 36.65 3.69
5019 5555 7.421599 TGATTGCATGTATATGTTTTTACCCG 58.578 34.615 1.14 0.00 36.65 5.28
5020 5556 7.283354 TGATTGCATGTATATGTTTTTACCCGA 59.717 33.333 1.14 0.00 36.65 5.14
5021 5557 7.392494 TTGCATGTATATGTTTTTACCCGAA 57.608 32.000 1.14 0.00 36.65 4.30
5022 5558 7.575414 TGCATGTATATGTTTTTACCCGAAT 57.425 32.000 1.14 0.00 36.65 3.34
5023 5559 8.001881 TGCATGTATATGTTTTTACCCGAATT 57.998 30.769 1.14 0.00 36.65 2.17
5024 5560 8.470805 TGCATGTATATGTTTTTACCCGAATTT 58.529 29.630 1.14 0.00 36.65 1.82
5025 5561 9.308318 GCATGTATATGTTTTTACCCGAATTTT 57.692 29.630 1.14 0.00 36.65 1.82
5032 5568 6.930973 TGTTTTTACCCGAATTTTTAAACGC 58.069 32.000 0.00 0.00 0.00 4.84
5033 5569 5.802812 TTTTACCCGAATTTTTAAACGCG 57.197 34.783 3.53 3.53 0.00 6.01
5034 5570 1.688793 ACCCGAATTTTTAAACGCGC 58.311 45.000 5.73 0.00 0.00 6.86
5035 5571 1.001597 ACCCGAATTTTTAAACGCGCA 60.002 42.857 5.73 0.00 0.00 6.09
5036 5572 1.646726 CCCGAATTTTTAAACGCGCAG 59.353 47.619 5.73 2.42 0.00 5.18
5052 5588 2.816958 AGCTGCGCTGGATCGTTG 60.817 61.111 16.47 0.00 37.57 4.10
5053 5589 3.121030 GCTGCGCTGGATCGTTGT 61.121 61.111 16.47 0.00 0.00 3.32
5054 5590 3.084579 CTGCGCTGGATCGTTGTC 58.915 61.111 9.73 0.00 0.00 3.18
5055 5591 1.446792 CTGCGCTGGATCGTTGTCT 60.447 57.895 9.73 0.00 0.00 3.41
5056 5592 1.005037 TGCGCTGGATCGTTGTCTT 60.005 52.632 9.73 0.00 0.00 3.01
5057 5593 1.291184 TGCGCTGGATCGTTGTCTTG 61.291 55.000 9.73 0.00 0.00 3.02
5058 5594 1.014044 GCGCTGGATCGTTGTCTTGA 61.014 55.000 0.00 0.00 0.00 3.02
5059 5595 0.994995 CGCTGGATCGTTGTCTTGAG 59.005 55.000 0.00 0.00 0.00 3.02
5060 5596 0.723981 GCTGGATCGTTGTCTTGAGC 59.276 55.000 0.00 0.00 0.00 4.26
5061 5597 0.994995 CTGGATCGTTGTCTTGAGCG 59.005 55.000 0.00 0.00 0.00 5.03
5062 5598 1.014044 TGGATCGTTGTCTTGAGCGC 61.014 55.000 0.00 0.00 0.00 5.92
5063 5599 1.014044 GGATCGTTGTCTTGAGCGCA 61.014 55.000 11.47 0.00 0.00 6.09
5064 5600 0.093705 GATCGTTGTCTTGAGCGCAC 59.906 55.000 11.47 3.13 0.00 5.34
5065 5601 1.617755 ATCGTTGTCTTGAGCGCACG 61.618 55.000 11.47 8.40 0.00 5.34
5066 5602 2.127609 GTTGTCTTGAGCGCACGC 60.128 61.111 11.47 6.99 42.33 5.34
5079 5615 2.741985 CACGCTCATGTCCGCCAA 60.742 61.111 7.48 0.00 0.00 4.52
5080 5616 2.108514 CACGCTCATGTCCGCCAAT 61.109 57.895 7.48 0.00 0.00 3.16
5081 5617 1.377202 ACGCTCATGTCCGCCAATT 60.377 52.632 7.48 0.00 0.00 2.32
5082 5618 0.960364 ACGCTCATGTCCGCCAATTT 60.960 50.000 7.48 0.00 0.00 1.82
5083 5619 0.248215 CGCTCATGTCCGCCAATTTC 60.248 55.000 0.00 0.00 0.00 2.17
5084 5620 1.098050 GCTCATGTCCGCCAATTTCT 58.902 50.000 0.00 0.00 0.00 2.52
5085 5621 1.474077 GCTCATGTCCGCCAATTTCTT 59.526 47.619 0.00 0.00 0.00 2.52
5086 5622 2.094545 GCTCATGTCCGCCAATTTCTTT 60.095 45.455 0.00 0.00 0.00 2.52
5087 5623 3.762779 CTCATGTCCGCCAATTTCTTTC 58.237 45.455 0.00 0.00 0.00 2.62
5088 5624 2.491693 TCATGTCCGCCAATTTCTTTCC 59.508 45.455 0.00 0.00 0.00 3.13
5089 5625 1.253100 TGTCCGCCAATTTCTTTCCC 58.747 50.000 0.00 0.00 0.00 3.97
5090 5626 0.170339 GTCCGCCAATTTCTTTCCCG 59.830 55.000 0.00 0.00 0.00 5.14
5091 5627 0.037017 TCCGCCAATTTCTTTCCCGA 59.963 50.000 0.00 0.00 0.00 5.14
5092 5628 0.170339 CCGCCAATTTCTTTCCCGAC 59.830 55.000 0.00 0.00 0.00 4.79
5093 5629 0.878416 CGCCAATTTCTTTCCCGACA 59.122 50.000 0.00 0.00 0.00 4.35
5094 5630 1.472480 CGCCAATTTCTTTCCCGACAT 59.528 47.619 0.00 0.00 0.00 3.06
5095 5631 2.731968 CGCCAATTTCTTTCCCGACATG 60.732 50.000 0.00 0.00 0.00 3.21
5096 5632 2.231235 GCCAATTTCTTTCCCGACATGT 59.769 45.455 0.00 0.00 0.00 3.21
5097 5633 3.836949 CCAATTTCTTTCCCGACATGTG 58.163 45.455 1.15 0.00 0.00 3.21
5098 5634 3.367292 CCAATTTCTTTCCCGACATGTGG 60.367 47.826 1.15 0.51 0.00 4.17
5099 5635 1.243902 TTTCTTTCCCGACATGTGGC 58.756 50.000 1.15 0.00 0.00 5.01
5100 5636 0.400213 TTCTTTCCCGACATGTGGCT 59.600 50.000 1.15 0.00 0.00 4.75
5101 5637 1.271856 TCTTTCCCGACATGTGGCTA 58.728 50.000 1.15 0.00 0.00 3.93
5102 5638 1.626321 TCTTTCCCGACATGTGGCTAA 59.374 47.619 1.15 0.00 0.00 3.09
5103 5639 2.238646 TCTTTCCCGACATGTGGCTAAT 59.761 45.455 1.15 0.00 0.00 1.73
5104 5640 3.452990 TCTTTCCCGACATGTGGCTAATA 59.547 43.478 1.15 0.00 0.00 0.98
5105 5641 2.902705 TCCCGACATGTGGCTAATAC 57.097 50.000 1.15 0.00 0.00 1.89
5106 5642 2.112190 TCCCGACATGTGGCTAATACA 58.888 47.619 1.15 0.00 0.00 2.29
5107 5643 2.502130 TCCCGACATGTGGCTAATACAA 59.498 45.455 1.15 0.00 0.00 2.41
5108 5644 3.055021 TCCCGACATGTGGCTAATACAAA 60.055 43.478 1.15 0.00 0.00 2.83
5109 5645 3.692101 CCCGACATGTGGCTAATACAAAA 59.308 43.478 1.15 0.00 0.00 2.44
5110 5646 4.338118 CCCGACATGTGGCTAATACAAAAT 59.662 41.667 1.15 0.00 0.00 1.82
5111 5647 5.273170 CCGACATGTGGCTAATACAAAATG 58.727 41.667 1.15 0.00 0.00 2.32
5112 5648 4.734854 CGACATGTGGCTAATACAAAATGC 59.265 41.667 1.15 0.00 0.00 3.56
5113 5649 5.649557 GACATGTGGCTAATACAAAATGCA 58.350 37.500 1.15 0.00 0.00 3.96
5114 5650 6.035368 ACATGTGGCTAATACAAAATGCAA 57.965 33.333 0.00 0.00 0.00 4.08
5115 5651 6.642430 ACATGTGGCTAATACAAAATGCAAT 58.358 32.000 0.00 0.00 0.00 3.56
5116 5652 7.104939 ACATGTGGCTAATACAAAATGCAATT 58.895 30.769 0.00 0.00 38.98 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.923864 AGAGGAACACGCGTGCCA 61.924 61.111 37.35 0.00 44.59 4.92
31 32 3.551863 CCCGCATTGTAAAGAAGCAACAA 60.552 43.478 0.00 0.00 37.51 2.83
34 35 1.067915 GCCCGCATTGTAAAGAAGCAA 60.068 47.619 0.00 0.00 0.00 3.91
89 90 1.524621 CGGAGGTGGCTAATGCAGG 60.525 63.158 0.00 0.00 41.91 4.85
91 92 2.124736 GCGGAGGTGGCTAATGCA 60.125 61.111 0.00 0.00 41.91 3.96
181 182 2.363680 CCAGAGTATGAGTGCTACCAGG 59.636 54.545 0.00 0.00 0.00 4.45
203 204 0.546598 CCTTTCCCATTAGCGGTCCT 59.453 55.000 0.00 0.00 0.00 3.85
209 210 3.117512 TCCAATCTCCCTTTCCCATTAGC 60.118 47.826 0.00 0.00 0.00 3.09
264 266 2.768344 GGAAGCTCGGATCCCCCA 60.768 66.667 6.06 0.00 34.14 4.96
278 280 1.331447 CATTGCTTCATCGCATCGGAA 59.669 47.619 0.00 0.00 40.04 4.30
289 291 2.390599 GCGCGAGTCCATTGCTTCA 61.391 57.895 12.10 0.00 35.99 3.02
292 294 2.816958 CAGCGCGAGTCCATTGCT 60.817 61.111 12.10 0.00 35.99 3.91
312 314 2.741211 GACAAACGGCGGGACCTC 60.741 66.667 13.24 0.00 35.61 3.85
347 349 2.042831 GCATTGCACTCTCCCGCTT 61.043 57.895 3.15 0.00 0.00 4.68
353 355 1.421485 CCGTTCGCATTGCACTCTC 59.579 57.895 9.69 0.00 0.00 3.20
354 356 2.680913 GCCGTTCGCATTGCACTCT 61.681 57.895 9.69 0.00 37.47 3.24
389 391 3.607163 GGGTGTCGTCCCGTATGA 58.393 61.111 0.00 0.00 37.93 2.15
396 398 2.214920 ACTTCCTGGGGTGTCGTCC 61.215 63.158 0.00 0.00 0.00 4.79
397 399 1.004918 CACTTCCTGGGGTGTCGTC 60.005 63.158 10.90 0.00 0.00 4.20
427 429 8.625651 GCGGATCTGACTTCACTATACATATAT 58.374 37.037 5.48 0.00 0.00 0.86
428 430 7.829706 AGCGGATCTGACTTCACTATACATATA 59.170 37.037 5.48 0.00 0.00 0.86
429 431 6.661377 AGCGGATCTGACTTCACTATACATAT 59.339 38.462 5.48 0.00 0.00 1.78
430 432 6.004574 AGCGGATCTGACTTCACTATACATA 58.995 40.000 5.48 0.00 0.00 2.29
431 433 4.830046 AGCGGATCTGACTTCACTATACAT 59.170 41.667 5.48 0.00 0.00 2.29
432 434 4.036852 CAGCGGATCTGACTTCACTATACA 59.963 45.833 5.48 0.00 45.72 2.29
433 435 4.541779 CAGCGGATCTGACTTCACTATAC 58.458 47.826 5.48 0.00 45.72 1.47
434 436 3.004839 GCAGCGGATCTGACTTCACTATA 59.995 47.826 5.48 0.00 45.72 1.31
435 437 2.223923 GCAGCGGATCTGACTTCACTAT 60.224 50.000 5.48 0.00 45.72 2.12
436 438 1.135139 GCAGCGGATCTGACTTCACTA 59.865 52.381 5.48 0.00 45.72 2.74
437 439 0.108424 GCAGCGGATCTGACTTCACT 60.108 55.000 5.48 0.00 45.72 3.41
438 440 2.378028 GCAGCGGATCTGACTTCAC 58.622 57.895 5.48 0.00 45.72 3.18
439 441 4.919653 GCAGCGGATCTGACTTCA 57.080 55.556 5.48 0.00 45.72 3.02
444 446 4.166888 GGCAGGCAGCGGATCTGA 62.167 66.667 5.48 0.00 45.72 3.27
453 455 3.515286 CTTCGGCATGGCAGGCAG 61.515 66.667 26.44 22.20 0.00 4.85
454 456 3.565961 TTCTTCGGCATGGCAGGCA 62.566 57.895 26.44 2.76 0.00 4.75
455 457 2.751436 TTCTTCGGCATGGCAGGC 60.751 61.111 17.03 17.03 0.00 4.85
456 458 2.117156 CCTTCTTCGGCATGGCAGG 61.117 63.158 20.37 13.74 0.00 4.85
457 459 3.506108 CCTTCTTCGGCATGGCAG 58.494 61.111 20.37 10.14 0.00 4.85
465 467 4.814294 CCGTCCGGCCTTCTTCGG 62.814 72.222 0.00 4.22 46.89 4.30
466 468 4.814294 CCCGTCCGGCCTTCTTCG 62.814 72.222 0.00 0.00 0.00 3.79
467 469 3.372554 CTCCCGTCCGGCCTTCTTC 62.373 68.421 0.00 0.00 0.00 2.87
468 470 3.391382 CTCCCGTCCGGCCTTCTT 61.391 66.667 0.00 0.00 0.00 2.52
476 478 4.760047 CACCCAAGCTCCCGTCCG 62.760 72.222 0.00 0.00 0.00 4.79
477 479 4.410400 CCACCCAAGCTCCCGTCC 62.410 72.222 0.00 0.00 0.00 4.79
481 483 3.682292 CTACGCCACCCAAGCTCCC 62.682 68.421 0.00 0.00 0.00 4.30
482 484 2.125106 CTACGCCACCCAAGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
483 485 2.125106 CCTACGCCACCCAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
484 486 3.717294 CCCTACGCCACCCAAGCT 61.717 66.667 0.00 0.00 0.00 3.74
485 487 3.262448 TTCCCTACGCCACCCAAGC 62.262 63.158 0.00 0.00 0.00 4.01
486 488 1.078426 CTTCCCTACGCCACCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
487 489 3.074281 CTTCCCTACGCCACCCAA 58.926 61.111 0.00 0.00 0.00 4.12
488 490 3.712907 GCTTCCCTACGCCACCCA 61.713 66.667 0.00 0.00 0.00 4.51
489 491 4.832608 CGCTTCCCTACGCCACCC 62.833 72.222 0.00 0.00 0.00 4.61
490 492 4.832608 CCGCTTCCCTACGCCACC 62.833 72.222 0.00 0.00 0.00 4.61
491 493 3.718210 CTCCGCTTCCCTACGCCAC 62.718 68.421 0.00 0.00 0.00 5.01
492 494 3.458163 CTCCGCTTCCCTACGCCA 61.458 66.667 0.00 0.00 0.00 5.69
493 495 4.222847 CCTCCGCTTCCCTACGCC 62.223 72.222 0.00 0.00 0.00 5.68
494 496 3.140225 CTCCTCCGCTTCCCTACGC 62.140 68.421 0.00 0.00 0.00 4.42
495 497 1.448922 CTCTCCTCCGCTTCCCTACG 61.449 65.000 0.00 0.00 0.00 3.51
496 498 0.396001 ACTCTCCTCCGCTTCCCTAC 60.396 60.000 0.00 0.00 0.00 3.18
497 499 1.133853 GTACTCTCCTCCGCTTCCCTA 60.134 57.143 0.00 0.00 0.00 3.53
498 500 0.396001 GTACTCTCCTCCGCTTCCCT 60.396 60.000 0.00 0.00 0.00 4.20
499 501 0.683504 TGTACTCTCCTCCGCTTCCC 60.684 60.000 0.00 0.00 0.00 3.97
500 502 0.741915 CTGTACTCTCCTCCGCTTCC 59.258 60.000 0.00 0.00 0.00 3.46
501 503 1.133407 CACTGTACTCTCCTCCGCTTC 59.867 57.143 0.00 0.00 0.00 3.86
502 504 1.178276 CACTGTACTCTCCTCCGCTT 58.822 55.000 0.00 0.00 0.00 4.68
503 505 0.328592 TCACTGTACTCTCCTCCGCT 59.671 55.000 0.00 0.00 0.00 5.52
504 506 1.133407 CTTCACTGTACTCTCCTCCGC 59.867 57.143 0.00 0.00 0.00 5.54
505 507 2.162608 CACTTCACTGTACTCTCCTCCG 59.837 54.545 0.00 0.00 0.00 4.63
506 508 3.191791 GTCACTTCACTGTACTCTCCTCC 59.808 52.174 0.00 0.00 0.00 4.30
507 509 4.076394 AGTCACTTCACTGTACTCTCCTC 58.924 47.826 0.00 0.00 0.00 3.71
508 510 4.107127 AGTCACTTCACTGTACTCTCCT 57.893 45.455 0.00 0.00 0.00 3.69
509 511 4.396790 CCTAGTCACTTCACTGTACTCTCC 59.603 50.000 0.00 0.00 0.00 3.71
510 512 5.247084 TCCTAGTCACTTCACTGTACTCTC 58.753 45.833 0.00 0.00 0.00 3.20
511 513 5.244189 TCCTAGTCACTTCACTGTACTCT 57.756 43.478 0.00 0.00 0.00 3.24
512 514 6.518208 AATCCTAGTCACTTCACTGTACTC 57.482 41.667 0.00 0.00 0.00 2.59
513 515 6.919775 AAATCCTAGTCACTTCACTGTACT 57.080 37.500 0.00 0.00 0.00 2.73
514 516 6.929606 ACAAAATCCTAGTCACTTCACTGTAC 59.070 38.462 0.00 0.00 0.00 2.90
515 517 7.015292 AGACAAAATCCTAGTCACTTCACTGTA 59.985 37.037 0.00 0.00 34.80 2.74
516 518 5.930135 ACAAAATCCTAGTCACTTCACTGT 58.070 37.500 0.00 0.00 0.00 3.55
517 519 6.146837 CAGACAAAATCCTAGTCACTTCACTG 59.853 42.308 0.00 0.00 34.80 3.66
518 520 6.226787 CAGACAAAATCCTAGTCACTTCACT 58.773 40.000 0.00 0.00 34.80 3.41
519 521 5.409826 CCAGACAAAATCCTAGTCACTTCAC 59.590 44.000 0.00 0.00 34.80 3.18
520 522 5.306937 TCCAGACAAAATCCTAGTCACTTCA 59.693 40.000 0.00 0.00 34.80 3.02
521 523 5.794894 TCCAGACAAAATCCTAGTCACTTC 58.205 41.667 0.00 0.00 34.80 3.01
522 524 5.825593 TCCAGACAAAATCCTAGTCACTT 57.174 39.130 0.00 0.00 34.80 3.16
523 525 5.825593 TTCCAGACAAAATCCTAGTCACT 57.174 39.130 0.00 0.00 34.80 3.41
524 526 6.877611 TTTTCCAGACAAAATCCTAGTCAC 57.122 37.500 0.00 0.00 34.80 3.67
525 527 7.230747 TCATTTTCCAGACAAAATCCTAGTCA 58.769 34.615 0.00 0.00 34.37 3.41
526 528 7.687941 TCATTTTCCAGACAAAATCCTAGTC 57.312 36.000 0.00 0.00 34.37 2.59
527 529 7.308589 CGTTCATTTTCCAGACAAAATCCTAGT 60.309 37.037 0.00 0.00 34.37 2.57
528 530 7.023575 CGTTCATTTTCCAGACAAAATCCTAG 58.976 38.462 0.00 0.00 34.37 3.02
529 531 6.712998 TCGTTCATTTTCCAGACAAAATCCTA 59.287 34.615 0.00 0.00 34.37 2.94
530 532 5.534654 TCGTTCATTTTCCAGACAAAATCCT 59.465 36.000 0.00 0.00 34.37 3.24
531 533 5.768317 TCGTTCATTTTCCAGACAAAATCC 58.232 37.500 0.00 0.00 34.37 3.01
532 534 6.668323 TCTCGTTCATTTTCCAGACAAAATC 58.332 36.000 0.00 0.00 34.37 2.17
533 535 6.633500 TCTCGTTCATTTTCCAGACAAAAT 57.367 33.333 0.00 0.00 36.57 1.82
534 536 6.317642 TCTTCTCGTTCATTTTCCAGACAAAA 59.682 34.615 0.00 0.00 0.00 2.44
535 537 5.820423 TCTTCTCGTTCATTTTCCAGACAAA 59.180 36.000 0.00 0.00 0.00 2.83
536 538 5.364778 TCTTCTCGTTCATTTTCCAGACAA 58.635 37.500 0.00 0.00 0.00 3.18
537 539 4.956085 TCTTCTCGTTCATTTTCCAGACA 58.044 39.130 0.00 0.00 0.00 3.41
538 540 5.924475 TTCTTCTCGTTCATTTTCCAGAC 57.076 39.130 0.00 0.00 0.00 3.51
539 541 9.314321 GTATATTCTTCTCGTTCATTTTCCAGA 57.686 33.333 0.00 0.00 0.00 3.86
540 542 9.319143 AGTATATTCTTCTCGTTCATTTTCCAG 57.681 33.333 0.00 0.00 0.00 3.86
548 550 9.011095 CCCTACATAGTATATTCTTCTCGTTCA 57.989 37.037 0.00 0.00 0.00 3.18
549 551 9.012161 ACCCTACATAGTATATTCTTCTCGTTC 57.988 37.037 0.00 0.00 0.00 3.95
550 552 8.937207 ACCCTACATAGTATATTCTTCTCGTT 57.063 34.615 0.00 0.00 0.00 3.85
551 553 7.333921 CGACCCTACATAGTATATTCTTCTCGT 59.666 40.741 0.00 0.00 0.00 4.18
552 554 7.201626 CCGACCCTACATAGTATATTCTTCTCG 60.202 44.444 0.00 0.00 0.00 4.04
553 555 7.067251 CCCGACCCTACATAGTATATTCTTCTC 59.933 44.444 0.00 0.00 0.00 2.87
554 556 6.890814 CCCGACCCTACATAGTATATTCTTCT 59.109 42.308 0.00 0.00 0.00 2.85
555 557 6.662663 ACCCGACCCTACATAGTATATTCTTC 59.337 42.308 0.00 0.00 0.00 2.87
556 558 6.436532 CACCCGACCCTACATAGTATATTCTT 59.563 42.308 0.00 0.00 0.00 2.52
557 559 5.950549 CACCCGACCCTACATAGTATATTCT 59.049 44.000 0.00 0.00 0.00 2.40
558 560 5.126707 CCACCCGACCCTACATAGTATATTC 59.873 48.000 0.00 0.00 0.00 1.75
559 561 5.021458 CCACCCGACCCTACATAGTATATT 58.979 45.833 0.00 0.00 0.00 1.28
560 562 4.571362 CCCACCCGACCCTACATAGTATAT 60.571 50.000 0.00 0.00 0.00 0.86
561 563 3.245371 CCCACCCGACCCTACATAGTATA 60.245 52.174 0.00 0.00 0.00 1.47
562 564 2.492196 CCCACCCGACCCTACATAGTAT 60.492 54.545 0.00 0.00 0.00 2.12
563 565 1.133388 CCCACCCGACCCTACATAGTA 60.133 57.143 0.00 0.00 0.00 1.82
564 566 0.398098 CCCACCCGACCCTACATAGT 60.398 60.000 0.00 0.00 0.00 2.12
567 569 3.087906 GCCCACCCGACCCTACAT 61.088 66.667 0.00 0.00 0.00 2.29
586 588 2.678934 TCCGAGCTAGCCCACGTT 60.679 61.111 12.13 0.00 0.00 3.99
587 589 3.450115 GTCCGAGCTAGCCCACGT 61.450 66.667 12.13 0.00 0.00 4.49
588 590 4.554363 CGTCCGAGCTAGCCCACG 62.554 72.222 12.13 14.61 0.00 4.94
589 591 3.450115 ACGTCCGAGCTAGCCCAC 61.450 66.667 12.13 2.48 0.00 4.61
590 592 3.449227 CACGTCCGAGCTAGCCCA 61.449 66.667 12.13 0.00 0.00 5.36
591 593 4.208686 CCACGTCCGAGCTAGCCC 62.209 72.222 12.13 0.00 0.00 5.19
592 594 3.412879 GACCACGTCCGAGCTAGCC 62.413 68.421 12.13 1.79 0.00 3.93
593 595 2.102553 GACCACGTCCGAGCTAGC 59.897 66.667 6.62 6.62 0.00 3.42
594 596 2.799371 GGACCACGTCCGAGCTAG 59.201 66.667 0.00 0.00 43.14 3.42
602 604 4.736896 GTCTGGGCGGACCACGTC 62.737 72.222 0.00 0.00 46.80 4.34
605 607 4.309950 AACGTCTGGGCGGACCAC 62.310 66.667 0.00 0.00 46.80 4.16
608 610 2.476534 TTACGAACGTCTGGGCGGAC 62.477 60.000 2.45 0.00 35.98 4.79
609 611 2.267351 TTACGAACGTCTGGGCGGA 61.267 57.895 2.45 0.00 35.98 5.54
610 612 2.090524 GTTACGAACGTCTGGGCGG 61.091 63.158 2.45 0.00 35.98 6.13
611 613 3.455685 GTTACGAACGTCTGGGCG 58.544 61.111 2.45 0.00 37.94 6.13
620 622 2.468532 CAGTGCGGCGTTACGAAC 59.531 61.111 9.62 0.00 42.75 3.95
621 623 3.408020 GCAGTGCGGCGTTACGAA 61.408 61.111 9.62 0.00 35.47 3.85
682 684 9.521503 TTTCGAGAGTTCTCATTATTGTATCTG 57.478 33.333 9.61 0.00 43.00 2.90
747 749 0.520404 CGTGCGGTGTACTACTCAGT 59.480 55.000 0.00 0.00 38.91 3.41
749 751 0.518636 GACGTGCGGTGTACTACTCA 59.481 55.000 0.00 0.00 0.00 3.41
750 752 0.801251 AGACGTGCGGTGTACTACTC 59.199 55.000 0.00 0.00 0.00 2.59
752 754 1.069378 GCAGACGTGCGGTGTACTAC 61.069 60.000 0.00 0.00 40.71 2.73
786 789 0.106918 TTGGTTTGGTTGCTCCGTCT 60.107 50.000 0.00 0.00 39.52 4.18
787 790 0.741915 TTTGGTTTGGTTGCTCCGTC 59.258 50.000 0.00 0.00 39.52 4.79
789 792 1.336795 GGATTTGGTTTGGTTGCTCCG 60.337 52.381 0.00 0.00 39.52 4.63
790 793 1.001974 GGGATTTGGTTTGGTTGCTCC 59.998 52.381 0.00 0.00 0.00 4.70
791 794 1.691434 TGGGATTTGGTTTGGTTGCTC 59.309 47.619 0.00 0.00 0.00 4.26
793 796 2.103941 TCTTGGGATTTGGTTTGGTTGC 59.896 45.455 0.00 0.00 0.00 4.17
794 797 3.387699 ACTCTTGGGATTTGGTTTGGTTG 59.612 43.478 0.00 0.00 0.00 3.77
795 798 3.641436 GACTCTTGGGATTTGGTTTGGTT 59.359 43.478 0.00 0.00 0.00 3.67
798 801 5.473039 GAATGACTCTTGGGATTTGGTTTG 58.527 41.667 0.00 0.00 0.00 2.93
799 802 4.218417 CGAATGACTCTTGGGATTTGGTTT 59.782 41.667 0.00 0.00 0.00 3.27
858 873 0.165944 GGAGCGACGAATGGTGTTTG 59.834 55.000 0.00 0.00 0.00 2.93
883 898 3.507597 TAGTGCGCGCTGGTGTGAA 62.508 57.895 32.64 8.61 0.00 3.18
906 921 1.024271 CGAGAAGAGGAGGCAGAGAG 58.976 60.000 0.00 0.00 0.00 3.20
944 962 2.599281 TGTCGTTGCCGAGGGAGA 60.599 61.111 0.00 0.00 45.26 3.71
947 965 4.680237 TGCTGTCGTTGCCGAGGG 62.680 66.667 0.00 0.00 45.26 4.30
1419 1437 3.646976 CCGAGCGCGACGAGGATA 61.647 66.667 25.74 0.00 40.82 2.59
1524 1542 0.749454 GGGACCTAAGGTAGACGCGA 60.749 60.000 15.93 0.00 35.25 5.87
1728 1746 2.847234 AAGCCCCTCCACGTGTCA 60.847 61.111 15.65 0.00 0.00 3.58
1998 2061 5.762045 AGTGTTCATTTCACGAATCAAAGG 58.238 37.500 0.00 0.00 40.28 3.11
2141 2204 3.061848 GCCCACATCACCAACGGG 61.062 66.667 0.00 0.00 40.11 5.28
2177 2240 3.820467 TCACAACAAACTCATCATCACCC 59.180 43.478 0.00 0.00 0.00 4.61
2304 2371 3.270027 TCGGTCTGGTATCATGCAAAAG 58.730 45.455 0.00 0.00 0.00 2.27
2427 2494 7.308169 GGGCAAAGAAATCTTCATTTCCAAAAG 60.308 37.037 4.22 0.00 46.50 2.27
2490 2558 7.395489 AGGATGTTTTGACAGAATTTAGCTCAT 59.605 33.333 0.00 0.00 0.00 2.90
2538 2606 3.393089 ACAAGCTCACATCTTCGAAGT 57.607 42.857 23.85 9.48 0.00 3.01
2539 2607 4.739046 AAACAAGCTCACATCTTCGAAG 57.261 40.909 19.35 19.35 0.00 3.79
2685 2754 3.565902 GGAAGTAGGTCTATGGCAAATGC 59.434 47.826 0.00 0.00 41.14 3.56
2801 2879 8.738645 TTGAAAAGAGAGGAAAATATCTAGGC 57.261 34.615 0.00 0.00 0.00 3.93
3032 3124 2.370849 GGGAGTGTGTCTTTTGGGACTA 59.629 50.000 0.00 0.00 37.16 2.59
3138 3650 7.530010 TCGTCGCTGTAACTAGTAAAAGTAAT 58.470 34.615 0.00 0.00 0.00 1.89
3142 3654 5.507527 GTCTCGTCGCTGTAACTAGTAAAAG 59.492 44.000 0.00 0.00 0.00 2.27
3291 3806 4.162131 TGATTGGTCAACTCAGCTGCTATA 59.838 41.667 9.47 0.00 0.00 1.31
3397 3912 1.194781 GCCCACAGTGGAGAGAGGAA 61.195 60.000 22.37 0.00 40.96 3.36
3403 3918 3.150949 CAGTGCCCACAGTGGAGA 58.849 61.111 22.37 3.62 42.55 3.71
3485 4000 1.259840 AAACCACCATGCATGCCCTC 61.260 55.000 21.69 0.00 0.00 4.30
4135 4650 3.329929 AGGGCTAAACTAAGTGGTTCG 57.670 47.619 0.00 0.00 0.00 3.95
4143 4658 1.135024 CCGCACGTAGGGCTAAACTAA 60.135 52.381 1.56 0.00 0.00 2.24
4186 4701 3.118261 TGGAATGGCTAGTCTGGCTTAAG 60.118 47.826 8.23 0.00 0.00 1.85
4210 4727 2.026301 GCTACGGCTGCTCTACGG 59.974 66.667 0.00 0.00 35.22 4.02
4315 4834 3.633116 ACCCCACCGCTTACGCTT 61.633 61.111 0.00 0.00 38.22 4.68
4316 4835 4.388499 CACCCCACCGCTTACGCT 62.388 66.667 0.00 0.00 38.22 5.07
4319 4838 2.622962 GCAACACCCCACCGCTTAC 61.623 63.158 0.00 0.00 0.00 2.34
4330 4849 2.472816 CAACCACTTCAATGCAACACC 58.527 47.619 0.00 0.00 0.00 4.16
4451 4980 4.692625 AGTGCTAATGAACTTGTGTAGCTG 59.307 41.667 0.00 0.00 38.38 4.24
4593 5122 6.095440 GGTTAGCATCATATCCAAACACAACT 59.905 38.462 0.00 0.00 0.00 3.16
4594 5123 6.095440 AGGTTAGCATCATATCCAAACACAAC 59.905 38.462 0.00 0.00 0.00 3.32
4595 5124 6.095300 CAGGTTAGCATCATATCCAAACACAA 59.905 38.462 0.00 0.00 0.00 3.33
4596 5125 5.589855 CAGGTTAGCATCATATCCAAACACA 59.410 40.000 0.00 0.00 0.00 3.72
4597 5126 5.506317 GCAGGTTAGCATCATATCCAAACAC 60.506 44.000 0.00 0.00 0.00 3.32
4598 5127 4.580167 GCAGGTTAGCATCATATCCAAACA 59.420 41.667 0.00 0.00 0.00 2.83
4599 5128 4.580167 TGCAGGTTAGCATCATATCCAAAC 59.420 41.667 0.00 0.00 40.11 2.93
4650 5179 1.799181 CGAGACACCGATCATCACACC 60.799 57.143 0.00 0.00 0.00 4.16
4732 5267 0.402121 AAAGCCGCTTCCCTCTTTCT 59.598 50.000 5.98 0.00 0.00 2.52
4752 5287 1.482553 GGGAGGGGGAATATGACGAGA 60.483 57.143 0.00 0.00 0.00 4.04
4892 5428 3.068590 CAGTTGAGGTGACCAAAAGCATT 59.931 43.478 3.63 0.00 0.00 3.56
4897 5433 4.437682 AGATCAGTTGAGGTGACCAAAA 57.562 40.909 3.63 0.00 0.00 2.44
4904 5440 6.971184 GCAAATATGAAAGATCAGTTGAGGTG 59.029 38.462 0.00 0.00 39.39 4.00
4913 5449 6.460537 GCCACTGATGCAAATATGAAAGATCA 60.461 38.462 0.00 0.00 40.57 2.92
4956 5492 6.426587 ACATGGTTTTCAGCCTACATTATCT 58.573 36.000 0.00 0.00 0.00 1.98
4958 5494 6.891908 AGAACATGGTTTTCAGCCTACATTAT 59.108 34.615 0.00 0.00 0.00 1.28
4968 5504 7.206981 ACAATCTACAGAACATGGTTTTCAG 57.793 36.000 0.00 0.00 0.00 3.02
4975 5511 6.529125 GCAATCAAACAATCTACAGAACATGG 59.471 38.462 0.00 0.00 0.00 3.66
4996 5532 7.575414 TCGGGTAAAAACATATACATGCAAT 57.425 32.000 0.00 0.00 35.39 3.56
5015 5551 1.001597 TGCGCGTTTAAAAATTCGGGT 60.002 42.857 8.43 0.00 38.23 5.28
5016 5552 1.646726 CTGCGCGTTTAAAAATTCGGG 59.353 47.619 8.43 8.15 38.79 5.14
5017 5553 1.057145 GCTGCGCGTTTAAAAATTCGG 59.943 47.619 8.43 0.00 0.00 4.30
5018 5554 1.976045 AGCTGCGCGTTTAAAAATTCG 59.024 42.857 8.43 0.00 0.00 3.34
5019 5555 2.470621 GCAGCTGCGCGTTTAAAAATTC 60.471 45.455 25.23 0.00 0.00 2.17
5020 5556 1.455408 GCAGCTGCGCGTTTAAAAATT 59.545 42.857 25.23 0.00 0.00 1.82
5021 5557 1.059942 GCAGCTGCGCGTTTAAAAAT 58.940 45.000 25.23 0.00 0.00 1.82
5022 5558 2.501071 GCAGCTGCGCGTTTAAAAA 58.499 47.368 25.23 0.00 0.00 1.94
5023 5559 4.220234 GCAGCTGCGCGTTTAAAA 57.780 50.000 25.23 0.00 0.00 1.52
5037 5573 1.016130 AAGACAACGATCCAGCGCAG 61.016 55.000 11.47 0.00 33.86 5.18
5038 5574 1.005037 AAGACAACGATCCAGCGCA 60.005 52.632 11.47 0.00 33.86 6.09
5039 5575 1.014044 TCAAGACAACGATCCAGCGC 61.014 55.000 0.00 0.00 33.86 5.92
5040 5576 0.994995 CTCAAGACAACGATCCAGCG 59.005 55.000 0.00 0.00 37.29 5.18
5041 5577 0.723981 GCTCAAGACAACGATCCAGC 59.276 55.000 0.00 0.00 0.00 4.85
5042 5578 0.994995 CGCTCAAGACAACGATCCAG 59.005 55.000 0.00 0.00 0.00 3.86
5043 5579 1.014044 GCGCTCAAGACAACGATCCA 61.014 55.000 0.00 0.00 0.00 3.41
5044 5580 1.014044 TGCGCTCAAGACAACGATCC 61.014 55.000 9.73 0.00 0.00 3.36
5045 5581 0.093705 GTGCGCTCAAGACAACGATC 59.906 55.000 9.73 0.00 0.00 3.69
5046 5582 1.617755 CGTGCGCTCAAGACAACGAT 61.618 55.000 9.73 0.00 0.00 3.73
5047 5583 2.300066 CGTGCGCTCAAGACAACGA 61.300 57.895 9.73 0.00 0.00 3.85
5048 5584 2.168621 CGTGCGCTCAAGACAACG 59.831 61.111 9.73 3.16 0.00 4.10
5049 5585 2.127609 GCGTGCGCTCAAGACAAC 60.128 61.111 9.73 0.00 38.26 3.32
5062 5598 1.647545 AATTGGCGGACATGAGCGTG 61.648 55.000 0.00 0.00 0.00 5.34
5063 5599 0.960364 AAATTGGCGGACATGAGCGT 60.960 50.000 0.00 0.00 0.00 5.07
5064 5600 0.248215 GAAATTGGCGGACATGAGCG 60.248 55.000 0.00 0.00 0.00 5.03
5065 5601 1.098050 AGAAATTGGCGGACATGAGC 58.902 50.000 0.00 1.50 0.00 4.26
5066 5602 3.428045 GGAAAGAAATTGGCGGACATGAG 60.428 47.826 0.00 0.00 0.00 2.90
5067 5603 2.491693 GGAAAGAAATTGGCGGACATGA 59.508 45.455 0.00 0.00 0.00 3.07
5068 5604 2.417243 GGGAAAGAAATTGGCGGACATG 60.417 50.000 0.00 0.00 0.00 3.21
5069 5605 1.824852 GGGAAAGAAATTGGCGGACAT 59.175 47.619 0.00 0.00 0.00 3.06
5070 5606 1.253100 GGGAAAGAAATTGGCGGACA 58.747 50.000 0.00 0.00 0.00 4.02
5071 5607 0.170339 CGGGAAAGAAATTGGCGGAC 59.830 55.000 0.00 0.00 0.00 4.79
5072 5608 0.037017 TCGGGAAAGAAATTGGCGGA 59.963 50.000 0.00 0.00 0.00 5.54
5073 5609 0.170339 GTCGGGAAAGAAATTGGCGG 59.830 55.000 0.00 0.00 0.00 6.13
5074 5610 0.878416 TGTCGGGAAAGAAATTGGCG 59.122 50.000 0.00 0.00 0.00 5.69
5075 5611 2.231235 ACATGTCGGGAAAGAAATTGGC 59.769 45.455 0.00 0.00 0.00 4.52
5076 5612 3.367292 CCACATGTCGGGAAAGAAATTGG 60.367 47.826 0.00 0.00 0.00 3.16
5077 5613 3.836949 CCACATGTCGGGAAAGAAATTG 58.163 45.455 0.00 0.00 0.00 2.32
5078 5614 2.231235 GCCACATGTCGGGAAAGAAATT 59.769 45.455 6.40 0.00 0.00 1.82
5079 5615 1.818674 GCCACATGTCGGGAAAGAAAT 59.181 47.619 6.40 0.00 0.00 2.17
5080 5616 1.202879 AGCCACATGTCGGGAAAGAAA 60.203 47.619 6.40 0.00 0.00 2.52
5081 5617 0.400213 AGCCACATGTCGGGAAAGAA 59.600 50.000 6.40 0.00 0.00 2.52
5082 5618 1.271856 TAGCCACATGTCGGGAAAGA 58.728 50.000 6.40 0.00 0.00 2.52
5083 5619 2.107950 TTAGCCACATGTCGGGAAAG 57.892 50.000 6.40 0.00 0.00 2.62
5084 5620 2.799126 ATTAGCCACATGTCGGGAAA 57.201 45.000 6.40 0.61 0.00 3.13
5085 5621 2.502130 TGTATTAGCCACATGTCGGGAA 59.498 45.455 6.40 0.00 0.00 3.97
5086 5622 2.112190 TGTATTAGCCACATGTCGGGA 58.888 47.619 6.40 0.00 0.00 5.14
5087 5623 2.613026 TGTATTAGCCACATGTCGGG 57.387 50.000 13.87 7.07 0.00 5.14
5088 5624 4.955925 TTTTGTATTAGCCACATGTCGG 57.044 40.909 0.00 2.40 0.00 4.79
5089 5625 4.734854 GCATTTTGTATTAGCCACATGTCG 59.265 41.667 0.00 0.00 0.00 4.35
5090 5626 5.649557 TGCATTTTGTATTAGCCACATGTC 58.350 37.500 0.00 0.00 0.00 3.06
5091 5627 5.657826 TGCATTTTGTATTAGCCACATGT 57.342 34.783 0.00 0.00 0.00 3.21
5092 5628 7.542534 AATTGCATTTTGTATTAGCCACATG 57.457 32.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.