Multiple sequence alignment - TraesCS5D01G521500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G521500 chr5D 100.000 2654 0 0 1 2654 542528978 542531631 0.000000e+00 4902.0
1 TraesCS5D01G521500 chr5D 95.303 809 25 5 1 802 205117645 205116843 0.000000e+00 1271.0
2 TraesCS5D01G521500 chr5D 94.601 815 30 6 1 806 464905052 464904243 0.000000e+00 1249.0
3 TraesCS5D01G521500 chr5D 94.321 810 33 8 1 802 554753634 554754438 0.000000e+00 1229.0
4 TraesCS5D01G521500 chr5D 94.205 811 35 5 1 804 560438531 560437726 0.000000e+00 1227.0
5 TraesCS5D01G521500 chr4A 94.640 1138 44 7 802 1934 626637305 626636180 0.000000e+00 1748.0
6 TraesCS5D01G521500 chr4A 97.838 185 4 0 2082 2266 626635951 626635767 1.190000e-83 320.0
7 TraesCS5D01G521500 chrUn 94.685 809 31 4 1 802 31727014 31727817 0.000000e+00 1245.0
8 TraesCS5D01G521500 chr2D 94.678 808 32 3 1 801 319688407 319689210 0.000000e+00 1243.0
9 TraesCS5D01G521500 chr7D 94.561 809 33 3 1 802 255781619 255782423 0.000000e+00 1240.0
10 TraesCS5D01G521500 chr7D 93.558 326 17 4 2332 2654 554309508 554309832 1.430000e-132 483.0
11 TraesCS5D01G521500 chr7D 91.185 329 18 5 2330 2654 614348336 614348015 1.130000e-118 436.0
12 TraesCS5D01G521500 chr7D 90.937 331 17 9 2330 2654 505334431 505334754 1.460000e-117 433.0
13 TraesCS5D01G521500 chr6D 94.458 812 33 4 1 805 14595983 14595177 0.000000e+00 1240.0
14 TraesCS5D01G521500 chr6D 94.561 809 32 4 1 802 53763179 53763982 0.000000e+00 1240.0
15 TraesCS5D01G521500 chr6D 89.058 329 27 5 2330 2654 208990178 208989855 1.480000e-107 399.0
16 TraesCS5D01G521500 chr5B 92.152 739 48 6 948 1684 684189984 684190714 0.000000e+00 1035.0
17 TraesCS5D01G521500 chr5B 92.241 116 8 1 802 916 684189866 684189981 2.110000e-36 163.0
18 TraesCS5D01G521500 chr5B 79.401 267 25 10 1690 1931 684191497 684191758 7.600000e-36 161.0
19 TraesCS5D01G521500 chr3B 80.875 617 102 12 954 1564 620824152 620823546 3.090000e-129 472.0
20 TraesCS5D01G521500 chr4D 91.437 327 20 5 2330 2654 10645262 10645582 2.420000e-120 442.0
21 TraesCS5D01G521500 chr4D 89.024 328 26 6 2330 2654 410154800 410155120 5.320000e-107 398.0
22 TraesCS5D01G521500 chr6A 89.697 330 24 9 2330 2654 22271896 22272220 1.900000e-111 412.0
23 TraesCS5D01G521500 chr3D 89.157 332 27 7 2330 2654 295967989 295968318 3.180000e-109 405.0
24 TraesCS5D01G521500 chr2A 88.822 331 31 6 2328 2654 239365335 239365663 4.120000e-108 401.0
25 TraesCS5D01G521500 chr7A 94.872 39 1 1 1947 1985 501978838 501978875 2.850000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G521500 chr5D 542528978 542531631 2653 False 4902 4902 100.000000 1 2654 1 chr5D.!!$F1 2653
1 TraesCS5D01G521500 chr5D 205116843 205117645 802 True 1271 1271 95.303000 1 802 1 chr5D.!!$R1 801
2 TraesCS5D01G521500 chr5D 464904243 464905052 809 True 1249 1249 94.601000 1 806 1 chr5D.!!$R2 805
3 TraesCS5D01G521500 chr5D 554753634 554754438 804 False 1229 1229 94.321000 1 802 1 chr5D.!!$F2 801
4 TraesCS5D01G521500 chr5D 560437726 560438531 805 True 1227 1227 94.205000 1 804 1 chr5D.!!$R3 803
5 TraesCS5D01G521500 chr4A 626635767 626637305 1538 True 1034 1748 96.239000 802 2266 2 chr4A.!!$R1 1464
6 TraesCS5D01G521500 chrUn 31727014 31727817 803 False 1245 1245 94.685000 1 802 1 chrUn.!!$F1 801
7 TraesCS5D01G521500 chr2D 319688407 319689210 803 False 1243 1243 94.678000 1 801 1 chr2D.!!$F1 800
8 TraesCS5D01G521500 chr7D 255781619 255782423 804 False 1240 1240 94.561000 1 802 1 chr7D.!!$F1 801
9 TraesCS5D01G521500 chr6D 14595177 14595983 806 True 1240 1240 94.458000 1 805 1 chr6D.!!$R1 804
10 TraesCS5D01G521500 chr6D 53763179 53763982 803 False 1240 1240 94.561000 1 802 1 chr6D.!!$F1 801
11 TraesCS5D01G521500 chr5B 684189866 684191758 1892 False 453 1035 87.931333 802 1931 3 chr5B.!!$F1 1129
12 TraesCS5D01G521500 chr3B 620823546 620824152 606 True 472 472 80.875000 954 1564 1 chr3B.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 376 0.744874 GGCGCTGAGGTGTATCAGTA 59.255 55.0 7.64 0.0 46.93 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2827 0.184933 TGCCAAATCCTAATCCCCGG 59.815 55.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.583495 CTGTCGACCCACTCGTGCTA 61.583 60.000 14.12 0.00 43.45 3.49
232 235 3.454587 TTGCACGGAGCTTCGGTGT 62.455 57.895 20.69 0.00 45.75 4.16
283 286 1.305219 TACGCTTTGTCATGCCTGGC 61.305 55.000 12.87 12.87 0.00 4.85
373 376 0.744874 GGCGCTGAGGTGTATCAGTA 59.255 55.000 7.64 0.00 46.93 2.74
400 403 1.490693 CGACGTGCTCAGCTGTTTGT 61.491 55.000 14.67 6.58 0.00 2.83
454 457 0.860533 GCGTCGACGATAGCTAGACT 59.139 55.000 39.74 0.00 43.02 3.24
458 461 3.125316 GTCGACGATAGCTAGACTGAGT 58.875 50.000 0.00 0.00 42.67 3.41
554 557 2.448542 AGTGTGTGCCCCAGACCT 60.449 61.111 0.00 0.00 38.07 3.85
570 573 4.625800 CTGGCAAGTGGCTAGGTC 57.374 61.111 6.41 0.00 46.49 3.85
572 575 1.888436 CTGGCAAGTGGCTAGGTCGA 61.888 60.000 6.41 0.00 46.49 4.20
595 598 6.080969 AGGTCTCAGGTCTTAGATGTTAGA 57.919 41.667 0.00 0.00 0.00 2.10
623 626 4.094294 GCTGCGATGTCTGTTTGGTATTAA 59.906 41.667 0.00 0.00 0.00 1.40
624 627 5.220854 GCTGCGATGTCTGTTTGGTATTAAT 60.221 40.000 0.00 0.00 0.00 1.40
625 628 6.677920 GCTGCGATGTCTGTTTGGTATTAATT 60.678 38.462 0.00 0.00 0.00 1.40
626 629 7.466725 GCTGCGATGTCTGTTTGGTATTAATTA 60.467 37.037 0.00 0.00 0.00 1.40
918 928 1.144969 CGCGCCACGTCCATATAATT 58.855 50.000 0.00 0.00 36.87 1.40
964 974 5.575606 CCAATCAACGTCAACTAATACGACT 59.424 40.000 1.45 0.00 41.55 4.18
1392 1406 4.436998 AAGTTCGCCGCCGAGGAG 62.437 66.667 0.91 0.00 45.35 3.69
1587 1601 3.685435 CGCTGGTTCAGGGCAATT 58.315 55.556 0.00 0.00 37.59 2.32
1588 1602 1.508088 CGCTGGTTCAGGGCAATTC 59.492 57.895 0.00 0.00 37.59 2.17
1589 1603 1.508088 GCTGGTTCAGGGCAATTCG 59.492 57.895 0.00 0.00 31.21 3.34
1590 1604 1.244019 GCTGGTTCAGGGCAATTCGT 61.244 55.000 0.00 0.00 31.21 3.85
1599 1613 4.834892 GCAATTCGTGCGCGCCAT 62.835 61.111 30.77 12.55 45.10 4.40
1601 1615 4.834892 AATTCGTGCGCGCCATGC 62.835 61.111 30.77 14.94 41.47 4.06
1686 1700 2.263077 CTGTAGTTTCGCAGTAGCCTG 58.737 52.381 0.00 0.00 41.91 4.85
1701 2492 0.107945 GCCTGAGGCTGGAACTACAG 60.108 60.000 17.96 0.00 46.69 2.74
1767 2558 3.068165 GGTCAATTGTAATTAGGGGCTGC 59.932 47.826 5.13 0.00 0.00 5.25
1852 2667 7.518161 TCAGATTTGTTTTACGAGTAATGCTG 58.482 34.615 0.00 0.00 0.00 4.41
1915 2733 5.543714 TGACTTTGGAACGAGTAATGCTAA 58.456 37.500 0.00 0.00 0.00 3.09
1959 2777 2.979813 GTTTTACGTGCAGGCTGATTTG 59.020 45.455 20.86 6.80 0.00 2.32
1960 2778 1.890876 TTACGTGCAGGCTGATTTGT 58.109 45.000 20.86 12.54 0.00 2.83
1961 2779 2.753055 TACGTGCAGGCTGATTTGTA 57.247 45.000 20.86 11.52 0.00 2.41
1962 2780 1.442769 ACGTGCAGGCTGATTTGTAG 58.557 50.000 20.86 3.96 0.00 2.74
1963 2781 0.729116 CGTGCAGGCTGATTTGTAGG 59.271 55.000 20.86 0.00 0.00 3.18
1964 2782 1.675714 CGTGCAGGCTGATTTGTAGGA 60.676 52.381 20.86 0.00 0.00 2.94
1965 2783 2.648059 GTGCAGGCTGATTTGTAGGAT 58.352 47.619 20.86 0.00 0.00 3.24
1966 2784 3.019564 GTGCAGGCTGATTTGTAGGATT 58.980 45.455 20.86 0.00 0.00 3.01
1967 2785 4.199310 GTGCAGGCTGATTTGTAGGATTA 58.801 43.478 20.86 0.00 0.00 1.75
1968 2786 4.274459 GTGCAGGCTGATTTGTAGGATTAG 59.726 45.833 20.86 0.00 0.00 1.73
1969 2787 3.817647 GCAGGCTGATTTGTAGGATTAGG 59.182 47.826 20.86 0.00 0.00 2.69
1970 2788 4.444876 GCAGGCTGATTTGTAGGATTAGGA 60.445 45.833 20.86 0.00 0.00 2.94
1971 2789 5.747248 GCAGGCTGATTTGTAGGATTAGGAT 60.747 44.000 20.86 0.00 0.00 3.24
1972 2790 6.302269 CAGGCTGATTTGTAGGATTAGGATT 58.698 40.000 9.42 0.00 0.00 3.01
1973 2791 6.206243 CAGGCTGATTTGTAGGATTAGGATTG 59.794 42.308 9.42 0.00 0.00 2.67
1974 2792 6.101734 AGGCTGATTTGTAGGATTAGGATTGA 59.898 38.462 0.00 0.00 0.00 2.57
1975 2793 6.772716 GGCTGATTTGTAGGATTAGGATTGAA 59.227 38.462 0.00 0.00 0.00 2.69
1976 2794 7.285401 GGCTGATTTGTAGGATTAGGATTGAAA 59.715 37.037 0.00 0.00 0.00 2.69
1977 2795 8.348507 GCTGATTTGTAGGATTAGGATTGAAAG 58.651 37.037 0.00 0.00 0.00 2.62
1978 2796 9.401058 CTGATTTGTAGGATTAGGATTGAAAGT 57.599 33.333 0.00 0.00 0.00 2.66
1979 2797 9.753674 TGATTTGTAGGATTAGGATTGAAAGTT 57.246 29.630 0.00 0.00 0.00 2.66
1981 2799 7.938140 TTGTAGGATTAGGATTGAAAGTTGG 57.062 36.000 0.00 0.00 0.00 3.77
1982 2800 6.423182 TGTAGGATTAGGATTGAAAGTTGGG 58.577 40.000 0.00 0.00 0.00 4.12
1983 2801 4.871822 AGGATTAGGATTGAAAGTTGGGG 58.128 43.478 0.00 0.00 0.00 4.96
1984 2802 3.960755 GGATTAGGATTGAAAGTTGGGGG 59.039 47.826 0.00 0.00 0.00 5.40
1999 2817 2.593420 GGGGGTGAACGGGTATGG 59.407 66.667 0.00 0.00 0.00 2.74
2000 2818 2.593420 GGGGTGAACGGGTATGGG 59.407 66.667 0.00 0.00 0.00 4.00
2001 2819 2.593420 GGGTGAACGGGTATGGGG 59.407 66.667 0.00 0.00 0.00 4.96
2002 2820 1.996748 GGGTGAACGGGTATGGGGA 60.997 63.158 0.00 0.00 0.00 4.81
2003 2821 1.525442 GGTGAACGGGTATGGGGAG 59.475 63.158 0.00 0.00 0.00 4.30
2004 2822 1.525442 GTGAACGGGTATGGGGAGG 59.475 63.158 0.00 0.00 0.00 4.30
2005 2823 0.979187 GTGAACGGGTATGGGGAGGA 60.979 60.000 0.00 0.00 0.00 3.71
2006 2824 0.979187 TGAACGGGTATGGGGAGGAC 60.979 60.000 0.00 0.00 0.00 3.85
2007 2825 2.024590 GAACGGGTATGGGGAGGACG 62.025 65.000 0.00 0.00 0.00 4.79
2008 2826 3.231736 CGGGTATGGGGAGGACGG 61.232 72.222 0.00 0.00 0.00 4.79
2009 2827 3.557290 GGGTATGGGGAGGACGGC 61.557 72.222 0.00 0.00 0.00 5.68
2010 2828 3.557290 GGTATGGGGAGGACGGCC 61.557 72.222 0.00 0.00 0.00 6.13
2011 2829 3.925090 GTATGGGGAGGACGGCCG 61.925 72.222 26.86 26.86 39.96 6.13
2018 2836 2.841044 GAGGACGGCCGGGGATTA 60.841 66.667 31.76 0.00 39.96 1.75
2019 2837 2.842936 AGGACGGCCGGGGATTAG 60.843 66.667 31.76 0.00 39.96 1.73
2020 2838 3.937447 GGACGGCCGGGGATTAGG 61.937 72.222 31.76 0.00 0.00 2.69
2021 2839 2.841044 GACGGCCGGGGATTAGGA 60.841 66.667 31.76 0.00 0.00 2.94
2022 2840 2.122547 ACGGCCGGGGATTAGGAT 60.123 61.111 31.76 0.00 0.00 3.24
2023 2841 1.765597 GACGGCCGGGGATTAGGATT 61.766 60.000 31.76 2.41 0.00 3.01
2024 2842 1.350310 ACGGCCGGGGATTAGGATTT 61.350 55.000 31.76 0.00 0.00 2.17
2025 2843 0.889186 CGGCCGGGGATTAGGATTTG 60.889 60.000 20.10 0.00 0.00 2.32
2026 2844 0.539669 GGCCGGGGATTAGGATTTGG 60.540 60.000 2.18 0.00 0.00 3.28
2027 2845 1.179174 GCCGGGGATTAGGATTTGGC 61.179 60.000 2.18 0.00 0.00 4.52
2028 2846 0.184933 CCGGGGATTAGGATTTGGCA 59.815 55.000 0.00 0.00 0.00 4.92
2029 2847 1.609208 CGGGGATTAGGATTTGGCAG 58.391 55.000 0.00 0.00 0.00 4.85
2030 2848 1.819305 CGGGGATTAGGATTTGGCAGG 60.819 57.143 0.00 0.00 0.00 4.85
2031 2849 1.217942 GGGGATTAGGATTTGGCAGGT 59.782 52.381 0.00 0.00 0.00 4.00
2032 2850 2.359249 GGGGATTAGGATTTGGCAGGTT 60.359 50.000 0.00 0.00 0.00 3.50
2033 2851 3.117284 GGGGATTAGGATTTGGCAGGTTA 60.117 47.826 0.00 0.00 0.00 2.85
2034 2852 3.889538 GGGATTAGGATTTGGCAGGTTAC 59.110 47.826 0.00 0.00 0.00 2.50
2035 2853 4.532834 GGATTAGGATTTGGCAGGTTACA 58.467 43.478 0.00 0.00 0.00 2.41
2036 2854 5.140454 GGATTAGGATTTGGCAGGTTACAT 58.860 41.667 0.00 0.00 0.00 2.29
2037 2855 6.303839 GGATTAGGATTTGGCAGGTTACATA 58.696 40.000 0.00 0.00 0.00 2.29
2038 2856 6.775629 GGATTAGGATTTGGCAGGTTACATAA 59.224 38.462 0.00 0.00 0.00 1.90
2039 2857 7.286775 GGATTAGGATTTGGCAGGTTACATAAA 59.713 37.037 0.00 0.00 0.00 1.40
2040 2858 8.782137 ATTAGGATTTGGCAGGTTACATAAAT 57.218 30.769 0.00 0.00 0.00 1.40
2041 2859 6.715347 AGGATTTGGCAGGTTACATAAATC 57.285 37.500 0.00 0.00 35.11 2.17
2042 2860 6.435164 AGGATTTGGCAGGTTACATAAATCT 58.565 36.000 0.00 0.00 35.78 2.40
2043 2861 6.897413 AGGATTTGGCAGGTTACATAAATCTT 59.103 34.615 0.00 0.00 35.78 2.40
2044 2862 7.400052 AGGATTTGGCAGGTTACATAAATCTTT 59.600 33.333 0.00 0.00 35.78 2.52
2045 2863 7.492344 GGATTTGGCAGGTTACATAAATCTTTG 59.508 37.037 0.00 0.00 35.78 2.77
2046 2864 6.909550 TTGGCAGGTTACATAAATCTTTGT 57.090 33.333 0.00 0.00 0.00 2.83
2047 2865 8.410673 TTTGGCAGGTTACATAAATCTTTGTA 57.589 30.769 0.00 0.00 0.00 2.41
2048 2866 7.624360 TGGCAGGTTACATAAATCTTTGTAG 57.376 36.000 0.00 0.00 30.53 2.74
2049 2867 6.601613 TGGCAGGTTACATAAATCTTTGTAGG 59.398 38.462 0.00 0.00 30.53 3.18
2050 2868 6.602009 GGCAGGTTACATAAATCTTTGTAGGT 59.398 38.462 0.00 0.00 30.53 3.08
2051 2869 7.415206 GGCAGGTTACATAAATCTTTGTAGGTG 60.415 40.741 0.00 0.00 30.53 4.00
2052 2870 7.415206 GCAGGTTACATAAATCTTTGTAGGTGG 60.415 40.741 0.00 0.00 30.53 4.61
2053 2871 7.610305 CAGGTTACATAAATCTTTGTAGGTGGT 59.390 37.037 0.00 0.00 30.53 4.16
2054 2872 8.168058 AGGTTACATAAATCTTTGTAGGTGGTT 58.832 33.333 0.00 0.00 30.53 3.67
2055 2873 9.452287 GGTTACATAAATCTTTGTAGGTGGTTA 57.548 33.333 0.00 0.00 30.53 2.85
2057 2875 7.605410 ACATAAATCTTTGTAGGTGGTTACG 57.395 36.000 0.00 0.00 0.00 3.18
2058 2876 7.163441 ACATAAATCTTTGTAGGTGGTTACGT 58.837 34.615 0.00 0.00 0.00 3.57
2059 2877 8.313292 ACATAAATCTTTGTAGGTGGTTACGTA 58.687 33.333 0.00 0.00 0.00 3.57
2060 2878 8.814235 CATAAATCTTTGTAGGTGGTTACGTAG 58.186 37.037 0.00 0.00 0.00 3.51
2061 2879 4.789012 TCTTTGTAGGTGGTTACGTAGG 57.211 45.455 0.00 0.00 0.00 3.18
2062 2880 4.151883 TCTTTGTAGGTGGTTACGTAGGT 58.848 43.478 0.00 0.00 0.00 3.08
2063 2881 4.588528 TCTTTGTAGGTGGTTACGTAGGTT 59.411 41.667 0.00 0.00 0.00 3.50
2064 2882 4.953940 TTGTAGGTGGTTACGTAGGTTT 57.046 40.909 0.00 0.00 0.00 3.27
2076 2894 7.175293 TGGTTACGTAGGTTTAGCATTTTTGAT 59.825 33.333 0.00 0.00 0.00 2.57
2078 2896 8.846607 GTTACGTAGGTTTAGCATTTTTGATTG 58.153 33.333 0.00 0.00 0.00 2.67
2079 2897 5.861787 ACGTAGGTTTAGCATTTTTGATTGC 59.138 36.000 0.00 0.00 39.17 3.56
2165 3183 5.596772 ACAAATGCTACACCTACCAAAAGTT 59.403 36.000 0.00 0.00 0.00 2.66
2171 3189 6.441284 TGCTACACCTACCAAAAGTTCCTATA 59.559 38.462 0.00 0.00 0.00 1.31
2182 3200 6.758416 CCAAAAGTTCCTATACGTAACCTACC 59.242 42.308 0.00 0.00 0.00 3.18
2268 3286 7.592885 TGACCTCTTATACACACTAATACCC 57.407 40.000 0.00 0.00 0.00 3.69
2269 3287 7.127405 TGACCTCTTATACACACTAATACCCA 58.873 38.462 0.00 0.00 0.00 4.51
2270 3288 7.787904 TGACCTCTTATACACACTAATACCCAT 59.212 37.037 0.00 0.00 0.00 4.00
2271 3289 7.963532 ACCTCTTATACACACTAATACCCATG 58.036 38.462 0.00 0.00 0.00 3.66
2272 3290 7.567622 ACCTCTTATACACACTAATACCCATGT 59.432 37.037 0.00 0.00 0.00 3.21
2273 3291 8.088981 CCTCTTATACACACTAATACCCATGTC 58.911 40.741 0.00 0.00 0.00 3.06
2274 3292 8.777578 TCTTATACACACTAATACCCATGTCT 57.222 34.615 0.00 0.00 0.00 3.41
2275 3293 9.871175 TCTTATACACACTAATACCCATGTCTA 57.129 33.333 0.00 0.00 0.00 2.59
2285 3303 3.736483 CATGTCTATGGGGCACGC 58.264 61.111 0.00 0.00 43.69 5.34
2286 3304 1.893808 CATGTCTATGGGGCACGCC 60.894 63.158 0.00 0.00 42.25 5.68
2287 3305 2.374525 ATGTCTATGGGGCACGCCA 61.375 57.895 10.83 9.05 42.25 5.69
2288 3306 1.920734 ATGTCTATGGGGCACGCCAA 61.921 55.000 10.75 0.00 42.25 4.52
2289 3307 2.112815 GTCTATGGGGCACGCCAAC 61.113 63.158 10.75 2.64 42.25 3.77
2290 3308 2.272146 CTATGGGGCACGCCAACT 59.728 61.111 10.75 0.00 42.25 3.16
2291 3309 1.378514 CTATGGGGCACGCCAACTT 60.379 57.895 10.75 3.31 42.25 2.66
2292 3310 0.965363 CTATGGGGCACGCCAACTTT 60.965 55.000 10.75 0.00 42.25 2.66
2293 3311 0.540830 TATGGGGCACGCCAACTTTT 60.541 50.000 10.75 0.00 42.25 2.27
2294 3312 1.815817 ATGGGGCACGCCAACTTTTC 61.816 55.000 10.75 0.00 42.25 2.29
2295 3313 2.200337 GGGGCACGCCAACTTTTCT 61.200 57.895 10.83 0.00 37.98 2.52
2296 3314 1.007387 GGGCACGCCAACTTTTCTG 60.007 57.895 10.83 0.00 37.98 3.02
2297 3315 1.007387 GGCACGCCAACTTTTCTGG 60.007 57.895 2.36 0.00 36.99 3.86
2298 3316 1.733526 GCACGCCAACTTTTCTGGT 59.266 52.632 0.00 0.00 36.24 4.00
2302 3320 1.838913 CGCCAACTTTTCTGGTGTTG 58.161 50.000 0.00 0.00 39.23 3.33
2333 3351 9.573166 CCTGTTGGGTTCAAATGATATATAAGA 57.427 33.333 0.00 0.00 34.28 2.10
2335 3353 9.066892 TGTTGGGTTCAAATGATATATAAGAGC 57.933 33.333 0.00 0.00 34.28 4.09
2336 3354 9.066892 GTTGGGTTCAAATGATATATAAGAGCA 57.933 33.333 0.00 0.00 34.28 4.26
2337 3355 9.812347 TTGGGTTCAAATGATATATAAGAGCAT 57.188 29.630 0.00 0.00 0.00 3.79
2338 3356 9.453572 TGGGTTCAAATGATATATAAGAGCATC 57.546 33.333 0.00 0.00 0.00 3.91
2349 3367 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
2370 3388 4.055227 CCCCAGGGGCGCCTAAAA 62.055 66.667 28.56 0.00 35.35 1.52
2371 3389 2.278738 CCCAGGGGCGCCTAAAAT 59.721 61.111 28.56 4.89 0.00 1.82
2372 3390 1.381191 CCCAGGGGCGCCTAAAATT 60.381 57.895 28.56 2.58 0.00 1.82
2373 3391 1.675720 CCCAGGGGCGCCTAAAATTG 61.676 60.000 28.56 14.72 0.00 2.32
2374 3392 1.141665 CAGGGGCGCCTAAAATTGC 59.858 57.895 28.56 6.44 0.00 3.56
2375 3393 2.058001 AGGGGCGCCTAAAATTGCC 61.058 57.895 28.56 16.41 46.82 4.52
2377 3395 2.582226 GGCGCCTAAAATTGCCGC 60.582 61.111 22.15 0.00 37.81 6.53
2378 3396 2.582226 GCGCCTAAAATTGCCGCC 60.582 61.111 0.00 0.00 0.00 6.13
2379 3397 3.063743 GCGCCTAAAATTGCCGCCT 62.064 57.895 0.00 0.00 0.00 5.52
2380 3398 1.226660 CGCCTAAAATTGCCGCCTG 60.227 57.895 0.00 0.00 0.00 4.85
2381 3399 1.141665 GCCTAAAATTGCCGCCTGG 59.858 57.895 0.00 0.00 38.77 4.45
2382 3400 1.815866 CCTAAAATTGCCGCCTGGG 59.184 57.895 0.00 0.00 39.58 4.45
2383 3401 1.675720 CCTAAAATTGCCGCCTGGGG 61.676 60.000 3.33 3.33 35.78 4.96
2421 3439 2.113139 CCTGTGGGCGAGTTGGTT 59.887 61.111 0.00 0.00 0.00 3.67
2422 3440 1.966451 CCTGTGGGCGAGTTGGTTC 60.966 63.158 0.00 0.00 0.00 3.62
2423 3441 1.966451 CTGTGGGCGAGTTGGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
2424 3442 2.671963 GTGGGCGAGTTGGTTCCC 60.672 66.667 0.00 0.00 39.22 3.97
2425 3443 3.172106 TGGGCGAGTTGGTTCCCA 61.172 61.111 0.00 0.00 45.87 4.37
2426 3444 2.359975 GGGCGAGTTGGTTCCCAG 60.360 66.667 0.00 0.00 38.62 4.45
2427 3445 2.430367 GGCGAGTTGGTTCCCAGT 59.570 61.111 0.00 0.00 33.81 4.00
2428 3446 1.671379 GGCGAGTTGGTTCCCAGTC 60.671 63.158 0.00 0.00 33.81 3.51
2429 3447 2.027625 GCGAGTTGGTTCCCAGTCG 61.028 63.158 13.48 13.48 41.59 4.18
2430 3448 2.027625 CGAGTTGGTTCCCAGTCGC 61.028 63.158 7.12 0.00 35.89 5.19
2431 3449 1.671379 GAGTTGGTTCCCAGTCGCC 60.671 63.158 0.00 0.00 33.81 5.54
2432 3450 3.047877 GTTGGTTCCCAGTCGCCG 61.048 66.667 0.00 0.00 33.81 6.46
2433 3451 4.323477 TTGGTTCCCAGTCGCCGG 62.323 66.667 0.00 0.00 33.81 6.13
2460 3478 3.536917 CGCCCCCAGATGCGTCTA 61.537 66.667 8.44 0.00 45.43 2.59
2461 3479 2.908015 GCCCCCAGATGCGTCTAA 59.092 61.111 8.44 0.00 32.09 2.10
2462 3480 1.451936 GCCCCCAGATGCGTCTAAT 59.548 57.895 8.44 0.00 32.09 1.73
2463 3481 0.179018 GCCCCCAGATGCGTCTAATT 60.179 55.000 8.44 0.00 32.09 1.40
2464 3482 1.750682 GCCCCCAGATGCGTCTAATTT 60.751 52.381 8.44 0.00 32.09 1.82
2465 3483 2.654863 CCCCCAGATGCGTCTAATTTT 58.345 47.619 8.44 0.00 32.09 1.82
2466 3484 3.023832 CCCCCAGATGCGTCTAATTTTT 58.976 45.455 8.44 0.00 32.09 1.94
2491 3509 2.095384 AAAAACGTTCGGCGAAGTTC 57.905 45.000 24.41 10.68 44.77 3.01
2492 3510 0.042794 AAAACGTTCGGCGAAGTTCG 60.043 50.000 24.41 23.94 44.77 3.95
2493 3511 1.824272 AAACGTTCGGCGAAGTTCGG 61.824 55.000 27.00 15.90 44.77 4.30
2494 3512 2.732094 CGTTCGGCGAAGTTCGGT 60.732 61.111 24.41 0.00 44.77 4.69
2495 3513 2.305127 CGTTCGGCGAAGTTCGGTT 61.305 57.895 24.41 0.00 44.77 4.44
2496 3514 1.003262 CGTTCGGCGAAGTTCGGTTA 61.003 55.000 24.41 0.00 44.77 2.85
2497 3515 1.139163 GTTCGGCGAAGTTCGGTTAA 58.861 50.000 24.41 0.00 40.84 2.01
2498 3516 1.526464 GTTCGGCGAAGTTCGGTTAAA 59.474 47.619 24.41 0.00 40.84 1.52
2499 3517 1.139163 TCGGCGAAGTTCGGTTAAAC 58.861 50.000 25.55 8.43 40.84 2.01
2500 3518 0.860533 CGGCGAAGTTCGGTTAAACA 59.139 50.000 25.55 0.00 40.84 2.83
2501 3519 1.397567 CGGCGAAGTTCGGTTAAACAC 60.398 52.381 25.55 7.02 40.84 3.32
2502 3520 1.397567 GGCGAAGTTCGGTTAAACACG 60.398 52.381 25.55 0.00 40.84 4.49
2503 3521 1.522258 GCGAAGTTCGGTTAAACACGA 59.478 47.619 25.55 0.00 40.84 4.35
2504 3522 2.657427 GCGAAGTTCGGTTAAACACGAC 60.657 50.000 25.55 1.65 40.84 4.34
2505 3523 2.791004 CGAAGTTCGGTTAAACACGACT 59.209 45.455 17.61 0.00 39.04 4.18
2506 3524 3.974401 CGAAGTTCGGTTAAACACGACTA 59.026 43.478 17.61 0.00 39.04 2.59
2507 3525 4.440758 CGAAGTTCGGTTAAACACGACTAA 59.559 41.667 17.61 0.00 39.04 2.24
2508 3526 5.051774 CGAAGTTCGGTTAAACACGACTAAA 60.052 40.000 17.61 0.00 39.04 1.85
2509 3527 6.346040 CGAAGTTCGGTTAAACACGACTAAAT 60.346 38.462 17.61 0.00 39.04 1.40
2510 3528 6.849588 AGTTCGGTTAAACACGACTAAATT 57.150 33.333 0.00 0.00 39.04 1.82
2511 3529 7.250445 AGTTCGGTTAAACACGACTAAATTT 57.750 32.000 0.00 0.00 39.04 1.82
2512 3530 7.347448 AGTTCGGTTAAACACGACTAAATTTC 58.653 34.615 0.00 0.00 39.04 2.17
2513 3531 5.903703 TCGGTTAAACACGACTAAATTTCG 58.096 37.500 0.00 0.00 42.36 3.46
2514 3532 5.689514 TCGGTTAAACACGACTAAATTTCGA 59.310 36.000 5.09 0.00 39.83 3.71
2515 3533 5.780269 CGGTTAAACACGACTAAATTTCGAC 59.220 40.000 5.09 0.00 39.83 4.20
2516 3534 6.561902 CGGTTAAACACGACTAAATTTCGACA 60.562 38.462 5.09 0.00 39.83 4.35
2517 3535 7.125113 GGTTAAACACGACTAAATTTCGACAA 58.875 34.615 5.09 0.00 39.83 3.18
2518 3536 7.639461 GGTTAAACACGACTAAATTTCGACAAA 59.361 33.333 5.09 0.00 39.83 2.83
2519 3537 8.456032 GTTAAACACGACTAAATTTCGACAAAC 58.544 33.333 5.09 0.12 39.83 2.93
2520 3538 5.978934 ACACGACTAAATTTCGACAAACT 57.021 34.783 5.09 0.00 39.83 2.66
2521 3539 6.354039 ACACGACTAAATTTCGACAAACTT 57.646 33.333 5.09 0.00 39.83 2.66
2522 3540 6.778108 ACACGACTAAATTTCGACAAACTTT 58.222 32.000 5.09 0.00 39.83 2.66
2523 3541 6.685403 ACACGACTAAATTTCGACAAACTTTG 59.315 34.615 5.09 0.00 39.83 2.77
2524 3542 6.140108 CACGACTAAATTTCGACAAACTTTGG 59.860 38.462 5.09 0.00 39.83 3.28
2525 3543 5.115021 CGACTAAATTTCGACAAACTTTGGC 59.885 40.000 6.47 1.71 38.85 4.52
2526 3544 5.897050 ACTAAATTTCGACAAACTTTGGCA 58.103 33.333 8.12 0.00 39.16 4.92
2527 3545 6.512297 ACTAAATTTCGACAAACTTTGGCAT 58.488 32.000 8.12 0.00 39.16 4.40
2528 3546 7.653647 ACTAAATTTCGACAAACTTTGGCATA 58.346 30.769 8.12 0.00 39.16 3.14
2529 3547 8.303876 ACTAAATTTCGACAAACTTTGGCATAT 58.696 29.630 8.12 0.00 39.16 1.78
2530 3548 9.781834 CTAAATTTCGACAAACTTTGGCATATA 57.218 29.630 8.12 0.00 39.16 0.86
2532 3550 9.651913 AAATTTCGACAAACTTTGGCATATATT 57.348 25.926 8.12 0.28 39.16 1.28
2533 3551 8.633075 ATTTCGACAAACTTTGGCATATATTG 57.367 30.769 8.12 0.00 39.16 1.90
2534 3552 6.993786 TCGACAAACTTTGGCATATATTGA 57.006 33.333 8.12 0.00 39.16 2.57
2535 3553 6.781138 TCGACAAACTTTGGCATATATTGAC 58.219 36.000 8.12 4.22 39.16 3.18
2536 3554 6.372937 TCGACAAACTTTGGCATATATTGACA 59.627 34.615 8.12 0.00 43.47 3.58
2537 3555 7.066887 TCGACAAACTTTGGCATATATTGACAT 59.933 33.333 8.12 0.00 44.92 3.06
2538 3556 7.166307 CGACAAACTTTGGCATATATTGACATG 59.834 37.037 8.12 0.00 44.92 3.21
2539 3557 7.839907 ACAAACTTTGGCATATATTGACATGT 58.160 30.769 0.00 0.00 44.92 3.21
2540 3558 8.313292 ACAAACTTTGGCATATATTGACATGTT 58.687 29.630 0.00 0.00 44.92 2.71
2541 3559 8.810427 CAAACTTTGGCATATATTGACATGTTC 58.190 33.333 0.00 0.00 44.92 3.18
2542 3560 6.728200 ACTTTGGCATATATTGACATGTTCG 58.272 36.000 0.00 0.00 44.92 3.95
2543 3561 4.747540 TGGCATATATTGACATGTTCGC 57.252 40.909 0.00 0.00 38.92 4.70
2544 3562 3.186205 TGGCATATATTGACATGTTCGCG 59.814 43.478 0.00 0.00 38.92 5.87
2545 3563 3.431912 GGCATATATTGACATGTTCGCGA 59.568 43.478 3.71 3.71 31.51 5.87
2546 3564 4.386230 GCATATATTGACATGTTCGCGAC 58.614 43.478 9.15 4.85 0.00 5.19
2547 3565 4.618300 CATATATTGACATGTTCGCGACG 58.382 43.478 9.15 0.00 0.00 5.12
2548 3566 0.643310 TATTGACATGTTCGCGACGC 59.357 50.000 9.15 10.49 0.00 5.19
2559 3577 4.696078 GCGACGCGGTACATAGAA 57.304 55.556 12.47 0.00 0.00 2.10
2560 3578 2.948093 GCGACGCGGTACATAGAAA 58.052 52.632 12.47 0.00 0.00 2.52
2561 3579 1.270971 GCGACGCGGTACATAGAAAA 58.729 50.000 12.47 0.00 0.00 2.29
2562 3580 1.856597 GCGACGCGGTACATAGAAAAT 59.143 47.619 12.47 0.00 0.00 1.82
2563 3581 3.044986 GCGACGCGGTACATAGAAAATA 58.955 45.455 12.47 0.00 0.00 1.40
2564 3582 3.671928 GCGACGCGGTACATAGAAAATAT 59.328 43.478 12.47 0.00 0.00 1.28
2565 3583 4.853196 GCGACGCGGTACATAGAAAATATA 59.147 41.667 12.47 0.00 0.00 0.86
2566 3584 5.343058 GCGACGCGGTACATAGAAAATATAA 59.657 40.000 12.47 0.00 0.00 0.98
2567 3585 6.665985 GCGACGCGGTACATAGAAAATATAAC 60.666 42.308 12.47 0.00 0.00 1.89
2568 3586 6.580041 CGACGCGGTACATAGAAAATATAACT 59.420 38.462 12.47 0.00 0.00 2.24
2569 3587 7.746034 CGACGCGGTACATAGAAAATATAACTA 59.254 37.037 12.47 0.00 0.00 2.24
2570 3588 9.398170 GACGCGGTACATAGAAAATATAACTAA 57.602 33.333 12.47 0.00 0.00 2.24
2571 3589 9.748708 ACGCGGTACATAGAAAATATAACTAAA 57.251 29.630 12.47 0.00 0.00 1.85
2590 3608 1.408422 AAAAAGAAATCGCTGCACGC 58.592 45.000 0.00 1.51 43.23 5.34
2591 3609 0.387239 AAAAGAAATCGCTGCACGCC 60.387 50.000 0.00 0.00 43.23 5.68
2592 3610 2.513065 AAAGAAATCGCTGCACGCCG 62.513 55.000 0.00 0.00 43.23 6.46
2593 3611 3.487202 GAAATCGCTGCACGCCGA 61.487 61.111 0.00 3.27 43.23 5.54
2594 3612 3.425938 GAAATCGCTGCACGCCGAG 62.426 63.158 0.00 0.00 43.23 4.63
2595 3613 4.742201 AATCGCTGCACGCCGAGT 62.742 61.111 0.00 0.70 43.23 4.18
2596 3614 2.829043 AAATCGCTGCACGCCGAGTA 62.829 55.000 0.00 0.00 43.23 2.59
2597 3615 3.758088 ATCGCTGCACGCCGAGTAG 62.758 63.158 0.00 0.00 43.23 2.57
2598 3616 4.778415 CGCTGCACGCCGAGTAGT 62.778 66.667 0.00 0.00 34.21 2.73
2599 3617 2.881352 GCTGCACGCCGAGTAGTC 60.881 66.667 1.51 0.00 0.00 2.59
2600 3618 2.577112 CTGCACGCCGAGTAGTCG 60.577 66.667 13.16 13.16 46.39 4.18
2601 3619 3.324099 CTGCACGCCGAGTAGTCGT 62.324 63.158 18.23 0.00 45.30 4.34
2602 3620 2.576317 GCACGCCGAGTAGTCGTC 60.576 66.667 18.23 4.99 45.30 4.20
2605 3623 2.021106 CGCCGAGTAGTCGTCGTC 59.979 66.667 14.75 2.65 42.36 4.20
2606 3624 2.021106 GCCGAGTAGTCGTCGTCG 59.979 66.667 18.23 4.21 45.30 5.12
2607 3625 2.734673 GCCGAGTAGTCGTCGTCGT 61.735 63.158 18.23 0.00 45.30 4.34
2608 3626 1.343147 CCGAGTAGTCGTCGTCGTC 59.657 63.158 18.23 0.00 45.30 4.20
2609 3627 1.015037 CGAGTAGTCGTCGTCGTCG 60.015 63.158 11.92 5.50 41.57 5.12
2610 3628 1.295787 GAGTAGTCGTCGTCGTCGC 60.296 63.158 7.01 3.07 38.33 5.19
2611 3629 2.276306 GTAGTCGTCGTCGTCGCC 60.276 66.667 7.01 0.00 38.33 5.54
2612 3630 2.738139 TAGTCGTCGTCGTCGCCA 60.738 61.111 7.01 0.00 38.33 5.69
2613 3631 3.015293 TAGTCGTCGTCGTCGCCAC 62.015 63.158 7.01 1.71 38.33 5.01
2616 3634 4.771356 CGTCGTCGTCGCCACCAT 62.771 66.667 0.00 0.00 36.96 3.55
2617 3635 2.879462 GTCGTCGTCGCCACCATC 60.879 66.667 0.00 0.00 36.96 3.51
2618 3636 4.124351 TCGTCGTCGCCACCATCC 62.124 66.667 0.00 0.00 36.96 3.51
2619 3637 4.129737 CGTCGTCGCCACCATCCT 62.130 66.667 0.00 0.00 0.00 3.24
2620 3638 2.202756 GTCGTCGCCACCATCCTC 60.203 66.667 0.00 0.00 0.00 3.71
2621 3639 3.822192 TCGTCGCCACCATCCTCG 61.822 66.667 0.00 0.00 0.00 4.63
2627 3645 4.838152 CCACCATCCTCGCCACCG 62.838 72.222 0.00 0.00 0.00 4.94
2647 3665 4.176851 GTCGTCGTCGGCCTCCTC 62.177 72.222 0.00 0.00 35.48 3.71
2650 3668 3.519930 GTCGTCGGCCTCCTCCTC 61.520 72.222 0.00 0.00 0.00 3.71
2651 3669 4.816984 TCGTCGGCCTCCTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
2652 3670 4.824515 CGTCGGCCTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
2653 3671 2.364448 GTCGGCCTCCTCCTCCTT 60.364 66.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.203480 AACACCGCCATTGCCTGT 60.203 55.556 0.00 0.00 0.00 4.00
454 457 4.558226 ACTGATGCATCAACCTTACTCA 57.442 40.909 28.39 5.03 36.18 3.41
458 461 5.420725 ACTGTACTGATGCATCAACCTTA 57.579 39.130 28.39 14.88 36.18 2.69
554 557 1.888436 CTCGACCTAGCCACTTGCCA 61.888 60.000 0.00 0.00 42.71 4.92
570 573 3.283751 ACATCTAAGACCTGAGACCTCG 58.716 50.000 0.00 0.00 0.00 4.63
572 575 5.889289 GTCTAACATCTAAGACCTGAGACCT 59.111 44.000 0.00 0.00 36.86 3.85
595 598 0.250467 AACAGACATCGCAGCCAAGT 60.250 50.000 0.00 0.00 0.00 3.16
811 820 1.002087 GAGTCGGGCTCCTTTTTCTGA 59.998 52.381 0.00 0.00 38.27 3.27
918 928 0.035317 CCAGCTGCTAACTGTGGTGA 59.965 55.000 8.66 0.00 33.09 4.02
964 974 1.300156 GCGTGCTATCTGATCGCCA 60.300 57.895 11.11 0.00 40.83 5.69
1109 1123 1.297745 CTCTCGACGTAGGCTTCGC 60.298 63.158 13.66 5.76 36.49 4.70
1240 1254 1.377202 GGCAGATCGGGCAAGTGAA 60.377 57.895 14.45 0.00 0.00 3.18
1245 1259 3.008517 TCCAGGCAGATCGGGCAA 61.009 61.111 20.83 3.87 35.46 4.52
1406 1420 3.159347 GGATAAGGCCGTCCGGGT 61.159 66.667 7.97 0.00 38.44 5.28
1645 1659 4.823442 CAGGTTGCATTATCATCAGGCTAA 59.177 41.667 0.00 0.00 0.00 3.09
1701 2492 1.014564 GGAGTGTTCGTAGCTGGTGC 61.015 60.000 0.00 0.00 40.05 5.01
1852 2667 0.322456 TGCAACCTCCCTGTACATGC 60.322 55.000 8.13 8.13 0.00 4.06
1928 2746 6.072397 AGCCTGCACGTAAAACAATTACATAA 60.072 34.615 0.00 0.00 0.00 1.90
1930 2748 4.217550 AGCCTGCACGTAAAACAATTACAT 59.782 37.500 0.00 0.00 0.00 2.29
1931 2749 3.566322 AGCCTGCACGTAAAACAATTACA 59.434 39.130 0.00 0.00 0.00 2.41
1932 2750 3.911964 CAGCCTGCACGTAAAACAATTAC 59.088 43.478 0.00 0.00 0.00 1.89
1933 2751 3.815962 TCAGCCTGCACGTAAAACAATTA 59.184 39.130 0.00 0.00 0.00 1.40
1934 2752 2.621055 TCAGCCTGCACGTAAAACAATT 59.379 40.909 0.00 0.00 0.00 2.32
1935 2753 2.226330 TCAGCCTGCACGTAAAACAAT 58.774 42.857 0.00 0.00 0.00 2.71
1936 2754 1.669604 TCAGCCTGCACGTAAAACAA 58.330 45.000 0.00 0.00 0.00 2.83
1937 2755 1.890876 ATCAGCCTGCACGTAAAACA 58.109 45.000 0.00 0.00 0.00 2.83
1938 2756 2.979813 CAAATCAGCCTGCACGTAAAAC 59.020 45.455 0.00 0.00 0.00 2.43
1939 2757 2.621055 ACAAATCAGCCTGCACGTAAAA 59.379 40.909 0.00 0.00 0.00 1.52
1940 2758 2.226330 ACAAATCAGCCTGCACGTAAA 58.774 42.857 0.00 0.00 0.00 2.01
1959 2777 5.828328 CCCCAACTTTCAATCCTAATCCTAC 59.172 44.000 0.00 0.00 0.00 3.18
1960 2778 5.103686 CCCCCAACTTTCAATCCTAATCCTA 60.104 44.000 0.00 0.00 0.00 2.94
1961 2779 4.326132 CCCCCAACTTTCAATCCTAATCCT 60.326 45.833 0.00 0.00 0.00 3.24
1962 2780 3.960755 CCCCCAACTTTCAATCCTAATCC 59.039 47.826 0.00 0.00 0.00 3.01
1982 2800 2.593420 CCATACCCGTTCACCCCC 59.407 66.667 0.00 0.00 0.00 5.40
1983 2801 2.593420 CCCATACCCGTTCACCCC 59.407 66.667 0.00 0.00 0.00 4.95
1984 2802 1.979619 CTCCCCATACCCGTTCACCC 61.980 65.000 0.00 0.00 0.00 4.61
1985 2803 1.525442 CTCCCCATACCCGTTCACC 59.475 63.158 0.00 0.00 0.00 4.02
1986 2804 0.979187 TCCTCCCCATACCCGTTCAC 60.979 60.000 0.00 0.00 0.00 3.18
1987 2805 0.979187 GTCCTCCCCATACCCGTTCA 60.979 60.000 0.00 0.00 0.00 3.18
1988 2806 1.828081 GTCCTCCCCATACCCGTTC 59.172 63.158 0.00 0.00 0.00 3.95
1989 2807 2.062177 CGTCCTCCCCATACCCGTT 61.062 63.158 0.00 0.00 0.00 4.44
1990 2808 2.443390 CGTCCTCCCCATACCCGT 60.443 66.667 0.00 0.00 0.00 5.28
1991 2809 3.231736 CCGTCCTCCCCATACCCG 61.232 72.222 0.00 0.00 0.00 5.28
1992 2810 3.557290 GCCGTCCTCCCCATACCC 61.557 72.222 0.00 0.00 0.00 3.69
1993 2811 3.557290 GGCCGTCCTCCCCATACC 61.557 72.222 0.00 0.00 0.00 2.73
1994 2812 3.925090 CGGCCGTCCTCCCCATAC 61.925 72.222 19.50 0.00 0.00 2.39
2001 2819 2.841044 TAATCCCCGGCCGTCCTC 60.841 66.667 26.12 0.00 0.00 3.71
2002 2820 2.842936 CTAATCCCCGGCCGTCCT 60.843 66.667 26.12 6.04 0.00 3.85
2003 2821 3.937447 CCTAATCCCCGGCCGTCC 61.937 72.222 26.12 0.00 0.00 4.79
2004 2822 1.765597 AATCCTAATCCCCGGCCGTC 61.766 60.000 26.12 0.00 0.00 4.79
2005 2823 1.350310 AAATCCTAATCCCCGGCCGT 61.350 55.000 26.12 7.53 0.00 5.68
2006 2824 0.889186 CAAATCCTAATCCCCGGCCG 60.889 60.000 21.04 21.04 0.00 6.13
2007 2825 0.539669 CCAAATCCTAATCCCCGGCC 60.540 60.000 0.00 0.00 0.00 6.13
2008 2826 1.179174 GCCAAATCCTAATCCCCGGC 61.179 60.000 0.00 0.00 0.00 6.13
2009 2827 0.184933 TGCCAAATCCTAATCCCCGG 59.815 55.000 0.00 0.00 0.00 5.73
2010 2828 1.609208 CTGCCAAATCCTAATCCCCG 58.391 55.000 0.00 0.00 0.00 5.73
2011 2829 1.217942 ACCTGCCAAATCCTAATCCCC 59.782 52.381 0.00 0.00 0.00 4.81
2012 2830 2.755952 ACCTGCCAAATCCTAATCCC 57.244 50.000 0.00 0.00 0.00 3.85
2013 2831 4.532834 TGTAACCTGCCAAATCCTAATCC 58.467 43.478 0.00 0.00 0.00 3.01
2014 2832 7.817418 TTATGTAACCTGCCAAATCCTAATC 57.183 36.000 0.00 0.00 0.00 1.75
2015 2833 8.782137 ATTTATGTAACCTGCCAAATCCTAAT 57.218 30.769 0.00 0.00 0.00 1.73
2016 2834 8.058847 AGATTTATGTAACCTGCCAAATCCTAA 58.941 33.333 0.00 0.00 34.46 2.69
2017 2835 7.582719 AGATTTATGTAACCTGCCAAATCCTA 58.417 34.615 0.00 0.00 34.46 2.94
2018 2836 6.435164 AGATTTATGTAACCTGCCAAATCCT 58.565 36.000 0.00 0.00 34.46 3.24
2019 2837 6.715347 AGATTTATGTAACCTGCCAAATCC 57.285 37.500 0.00 0.00 34.46 3.01
2020 2838 8.034804 ACAAAGATTTATGTAACCTGCCAAATC 58.965 33.333 0.00 0.00 34.24 2.17
2021 2839 7.906327 ACAAAGATTTATGTAACCTGCCAAAT 58.094 30.769 0.00 0.00 0.00 2.32
2022 2840 7.296628 ACAAAGATTTATGTAACCTGCCAAA 57.703 32.000 0.00 0.00 0.00 3.28
2023 2841 6.909550 ACAAAGATTTATGTAACCTGCCAA 57.090 33.333 0.00 0.00 0.00 4.52
2024 2842 6.601613 CCTACAAAGATTTATGTAACCTGCCA 59.398 38.462 0.00 0.00 32.05 4.92
2025 2843 6.602009 ACCTACAAAGATTTATGTAACCTGCC 59.398 38.462 0.00 0.00 32.05 4.85
2026 2844 7.415206 CCACCTACAAAGATTTATGTAACCTGC 60.415 40.741 0.00 0.00 32.05 4.85
2027 2845 7.610305 ACCACCTACAAAGATTTATGTAACCTG 59.390 37.037 0.00 0.00 32.05 4.00
2028 2846 7.696017 ACCACCTACAAAGATTTATGTAACCT 58.304 34.615 0.00 0.00 32.05 3.50
2029 2847 7.933215 ACCACCTACAAAGATTTATGTAACC 57.067 36.000 0.00 0.00 32.05 2.85
2031 2849 9.153721 CGTAACCACCTACAAAGATTTATGTAA 57.846 33.333 0.00 0.00 32.05 2.41
2032 2850 8.313292 ACGTAACCACCTACAAAGATTTATGTA 58.687 33.333 0.00 0.00 0.00 2.29
2033 2851 7.163441 ACGTAACCACCTACAAAGATTTATGT 58.837 34.615 0.00 0.00 0.00 2.29
2034 2852 7.605410 ACGTAACCACCTACAAAGATTTATG 57.395 36.000 0.00 0.00 0.00 1.90
2035 2853 7.983484 CCTACGTAACCACCTACAAAGATTTAT 59.017 37.037 0.00 0.00 0.00 1.40
2036 2854 7.039082 ACCTACGTAACCACCTACAAAGATTTA 60.039 37.037 0.00 0.00 0.00 1.40
2037 2855 6.168389 CCTACGTAACCACCTACAAAGATTT 58.832 40.000 0.00 0.00 0.00 2.17
2038 2856 5.246883 ACCTACGTAACCACCTACAAAGATT 59.753 40.000 0.00 0.00 0.00 2.40
2039 2857 4.774200 ACCTACGTAACCACCTACAAAGAT 59.226 41.667 0.00 0.00 0.00 2.40
2040 2858 4.151883 ACCTACGTAACCACCTACAAAGA 58.848 43.478 0.00 0.00 0.00 2.52
2041 2859 4.525912 ACCTACGTAACCACCTACAAAG 57.474 45.455 0.00 0.00 0.00 2.77
2042 2860 4.953940 AACCTACGTAACCACCTACAAA 57.046 40.909 0.00 0.00 0.00 2.83
2043 2861 4.953940 AAACCTACGTAACCACCTACAA 57.046 40.909 0.00 0.00 0.00 2.41
2044 2862 4.082245 GCTAAACCTACGTAACCACCTACA 60.082 45.833 0.00 0.00 0.00 2.74
2045 2863 4.082245 TGCTAAACCTACGTAACCACCTAC 60.082 45.833 0.00 0.00 0.00 3.18
2046 2864 4.085733 TGCTAAACCTACGTAACCACCTA 58.914 43.478 0.00 0.00 0.00 3.08
2047 2865 2.899256 TGCTAAACCTACGTAACCACCT 59.101 45.455 0.00 0.00 0.00 4.00
2048 2866 3.317603 TGCTAAACCTACGTAACCACC 57.682 47.619 0.00 0.00 0.00 4.61
2049 2867 5.868043 AAATGCTAAACCTACGTAACCAC 57.132 39.130 0.00 0.00 0.00 4.16
2050 2868 6.485984 TCAAAAATGCTAAACCTACGTAACCA 59.514 34.615 0.00 0.00 0.00 3.67
2051 2869 6.901265 TCAAAAATGCTAAACCTACGTAACC 58.099 36.000 0.00 0.00 0.00 2.85
2052 2870 8.846607 CAATCAAAAATGCTAAACCTACGTAAC 58.153 33.333 0.00 0.00 0.00 2.50
2053 2871 7.539366 GCAATCAAAAATGCTAAACCTACGTAA 59.461 33.333 0.00 0.00 39.46 3.18
2054 2872 7.024768 GCAATCAAAAATGCTAAACCTACGTA 58.975 34.615 0.00 0.00 39.46 3.57
2055 2873 5.861787 GCAATCAAAAATGCTAAACCTACGT 59.138 36.000 0.00 0.00 39.46 3.57
2056 2874 5.861251 TGCAATCAAAAATGCTAAACCTACG 59.139 36.000 0.00 0.00 42.97 3.51
2057 2875 7.384932 ACTTGCAATCAAAAATGCTAAACCTAC 59.615 33.333 0.00 0.00 42.97 3.18
2058 2876 7.441017 ACTTGCAATCAAAAATGCTAAACCTA 58.559 30.769 0.00 0.00 42.97 3.08
2059 2877 6.290605 ACTTGCAATCAAAAATGCTAAACCT 58.709 32.000 0.00 0.00 42.97 3.50
2060 2878 6.544038 ACTTGCAATCAAAAATGCTAAACC 57.456 33.333 0.00 0.00 42.97 3.27
2061 2879 9.928236 TTAAACTTGCAATCAAAAATGCTAAAC 57.072 25.926 0.00 0.00 42.97 2.01
2063 2881 9.323985 ACTTAAACTTGCAATCAAAAATGCTAA 57.676 25.926 0.00 0.00 42.97 3.09
2064 2882 8.885494 ACTTAAACTTGCAATCAAAAATGCTA 57.115 26.923 0.00 0.00 42.97 3.49
2076 2894 9.311916 TCTACGTAAACTTACTTAAACTTGCAA 57.688 29.630 0.00 0.00 0.00 4.08
2078 2896 9.737025 CATCTACGTAAACTTACTTAAACTTGC 57.263 33.333 0.00 0.00 0.00 4.01
2139 3157 3.066291 TGGTAGGTGTAGCATTTGTGG 57.934 47.619 0.00 0.00 31.57 4.17
2165 3183 6.948309 GGGATTTAGGTAGGTTACGTATAGGA 59.052 42.308 0.00 0.00 0.00 2.94
2171 3189 3.963374 GGAGGGATTTAGGTAGGTTACGT 59.037 47.826 0.00 0.00 0.00 3.57
2182 3200 4.299485 AGTTAGTGGAGGGAGGGATTTAG 58.701 47.826 0.00 0.00 0.00 1.85
2268 3286 1.893808 GGCGTGCCCCATAGACATG 60.894 63.158 0.00 0.00 0.00 3.21
2269 3287 1.920734 TTGGCGTGCCCCATAGACAT 61.921 55.000 8.69 0.00 34.21 3.06
2270 3288 2.597818 TTGGCGTGCCCCATAGACA 61.598 57.895 8.69 0.00 34.21 3.41
2271 3289 2.112815 GTTGGCGTGCCCCATAGAC 61.113 63.158 8.69 0.00 34.21 2.59
2272 3290 1.847798 AAGTTGGCGTGCCCCATAGA 61.848 55.000 8.69 0.00 34.21 1.98
2273 3291 0.965363 AAAGTTGGCGTGCCCCATAG 60.965 55.000 8.69 0.00 34.21 2.23
2274 3292 0.540830 AAAAGTTGGCGTGCCCCATA 60.541 50.000 8.69 0.00 34.21 2.74
2275 3293 1.815817 GAAAAGTTGGCGTGCCCCAT 61.816 55.000 8.69 0.00 34.21 4.00
2276 3294 2.443016 AAAAGTTGGCGTGCCCCA 60.443 55.556 8.69 0.00 34.56 4.96
2277 3295 2.200337 AGAAAAGTTGGCGTGCCCC 61.200 57.895 8.69 0.00 34.56 5.80
2278 3296 1.007387 CAGAAAAGTTGGCGTGCCC 60.007 57.895 8.69 0.00 34.56 5.36
2279 3297 1.007387 CCAGAAAAGTTGGCGTGCC 60.007 57.895 3.30 3.30 0.00 5.01
2280 3298 0.594796 CACCAGAAAAGTTGGCGTGC 60.595 55.000 0.00 0.00 39.39 5.34
2281 3299 0.738389 ACACCAGAAAAGTTGGCGTG 59.262 50.000 0.00 0.00 39.39 5.34
2282 3300 1.134175 CAACACCAGAAAAGTTGGCGT 59.866 47.619 0.00 0.00 39.39 5.68
2283 3301 1.838913 CAACACCAGAAAAGTTGGCG 58.161 50.000 0.00 0.00 39.39 5.69
2286 3304 4.081697 AGGTTTCCAACACCAGAAAAGTTG 60.082 41.667 0.00 0.00 41.61 3.16
2287 3305 4.081697 CAGGTTTCCAACACCAGAAAAGTT 60.082 41.667 0.00 0.00 36.67 2.66
2288 3306 3.447229 CAGGTTTCCAACACCAGAAAAGT 59.553 43.478 0.00 0.00 36.67 2.66
2289 3307 3.447229 ACAGGTTTCCAACACCAGAAAAG 59.553 43.478 0.00 0.00 36.67 2.27
2290 3308 3.436243 ACAGGTTTCCAACACCAGAAAA 58.564 40.909 0.00 0.00 36.67 2.29
2291 3309 3.094484 ACAGGTTTCCAACACCAGAAA 57.906 42.857 0.00 0.00 36.67 2.52
2292 3310 2.757868 CAACAGGTTTCCAACACCAGAA 59.242 45.455 0.00 0.00 36.67 3.02
2293 3311 2.374184 CAACAGGTTTCCAACACCAGA 58.626 47.619 0.00 0.00 36.67 3.86
2294 3312 1.408702 CCAACAGGTTTCCAACACCAG 59.591 52.381 0.00 0.00 36.67 4.00
2295 3313 1.479709 CCAACAGGTTTCCAACACCA 58.520 50.000 0.00 0.00 36.67 4.17
2296 3314 0.750249 CCCAACAGGTTTCCAACACC 59.250 55.000 0.00 0.00 34.06 4.16
2307 3325 9.573166 TCTTATATATCATTTGAACCCAACAGG 57.427 33.333 0.00 0.00 43.78 4.00
2309 3327 9.066892 GCTCTTATATATCATTTGAACCCAACA 57.933 33.333 0.00 0.00 30.88 3.33
2310 3328 9.066892 TGCTCTTATATATCATTTGAACCCAAC 57.933 33.333 0.00 0.00 30.88 3.77
2311 3329 9.812347 ATGCTCTTATATATCATTTGAACCCAA 57.188 29.630 0.00 0.00 0.00 4.12
2312 3330 9.453572 GATGCTCTTATATATCATTTGAACCCA 57.546 33.333 0.00 0.00 0.00 4.51
2313 3331 9.678260 AGATGCTCTTATATATCATTTGAACCC 57.322 33.333 0.00 0.00 0.00 4.11
2318 3336 8.828644 GCTGGAGATGCTCTTATATATCATTTG 58.171 37.037 0.00 0.00 0.00 2.32
2319 3337 7.992033 GGCTGGAGATGCTCTTATATATCATTT 59.008 37.037 0.00 0.00 0.00 2.32
2320 3338 7.507829 GGCTGGAGATGCTCTTATATATCATT 58.492 38.462 0.00 0.00 0.00 2.57
2321 3339 6.239261 CGGCTGGAGATGCTCTTATATATCAT 60.239 42.308 0.00 0.00 0.00 2.45
2322 3340 5.068329 CGGCTGGAGATGCTCTTATATATCA 59.932 44.000 0.00 0.00 0.00 2.15
2323 3341 5.068460 ACGGCTGGAGATGCTCTTATATATC 59.932 44.000 0.00 0.00 0.00 1.63
2324 3342 4.959210 ACGGCTGGAGATGCTCTTATATAT 59.041 41.667 0.00 0.00 0.00 0.86
2325 3343 4.344978 ACGGCTGGAGATGCTCTTATATA 58.655 43.478 0.00 0.00 0.00 0.86
2326 3344 3.169099 ACGGCTGGAGATGCTCTTATAT 58.831 45.455 0.00 0.00 0.00 0.86
2327 3345 2.598565 ACGGCTGGAGATGCTCTTATA 58.401 47.619 0.00 0.00 0.00 0.98
2328 3346 1.418334 ACGGCTGGAGATGCTCTTAT 58.582 50.000 0.00 0.00 0.00 1.73
2329 3347 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
2330 3348 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
2331 3349 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2332 3350 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
2354 3372 1.381191 AATTTTAGGCGCCCCTGGG 60.381 57.895 26.15 5.50 42.90 4.45
2355 3373 1.815866 CAATTTTAGGCGCCCCTGG 59.184 57.895 26.15 2.32 42.90 4.45
2356 3374 1.141665 GCAATTTTAGGCGCCCCTG 59.858 57.895 26.15 12.49 42.90 4.45
2357 3375 2.058001 GGCAATTTTAGGCGCCCCT 61.058 57.895 26.15 8.44 45.61 4.79
2358 3376 2.499205 GGCAATTTTAGGCGCCCC 59.501 61.111 26.15 11.03 38.67 5.80
2363 3381 1.141665 CCAGGCGGCAATTTTAGGC 59.858 57.895 13.08 0.00 0.00 3.93
2364 3382 1.675720 CCCCAGGCGGCAATTTTAGG 61.676 60.000 13.08 0.22 0.00 2.69
2365 3383 1.815866 CCCCAGGCGGCAATTTTAG 59.184 57.895 13.08 0.00 0.00 1.85
2366 3384 4.026300 CCCCAGGCGGCAATTTTA 57.974 55.556 13.08 0.00 0.00 1.52
2404 3422 1.966451 GAACCAACTCGCCCACAGG 60.966 63.158 0.00 0.00 0.00 4.00
2405 3423 1.966451 GGAACCAACTCGCCCACAG 60.966 63.158 0.00 0.00 0.00 3.66
2406 3424 2.112297 GGAACCAACTCGCCCACA 59.888 61.111 0.00 0.00 0.00 4.17
2444 3462 0.179018 AATTAGACGCATCTGGGGGC 60.179 55.000 0.00 0.00 36.29 5.80
2445 3463 2.348411 AAATTAGACGCATCTGGGGG 57.652 50.000 0.00 0.00 36.29 5.40
2472 3490 1.592830 CGAACTTCGCCGAACGTTTTT 60.593 47.619 0.46 0.00 44.19 1.94
2473 3491 0.042794 CGAACTTCGCCGAACGTTTT 60.043 50.000 0.46 0.00 44.19 2.43
2474 3492 1.561250 CGAACTTCGCCGAACGTTT 59.439 52.632 0.46 0.98 44.19 3.60
2475 3493 2.305127 CCGAACTTCGCCGAACGTT 61.305 57.895 0.00 0.00 44.19 3.99
2476 3494 2.732094 CCGAACTTCGCCGAACGT 60.732 61.111 5.61 0.00 44.19 3.99
2477 3495 1.003262 TAACCGAACTTCGCCGAACG 61.003 55.000 5.61 0.00 45.62 3.95
2478 3496 1.139163 TTAACCGAACTTCGCCGAAC 58.861 50.000 5.61 0.00 38.82 3.95
2479 3497 1.526464 GTTTAACCGAACTTCGCCGAA 59.474 47.619 5.61 0.00 38.82 4.30
2480 3498 1.139163 GTTTAACCGAACTTCGCCGA 58.861 50.000 5.61 0.00 38.82 5.54
2481 3499 0.860533 TGTTTAACCGAACTTCGCCG 59.139 50.000 5.61 0.00 38.82 6.46
2482 3500 1.397567 CGTGTTTAACCGAACTTCGCC 60.398 52.381 5.61 0.00 38.82 5.54
2483 3501 1.522258 TCGTGTTTAACCGAACTTCGC 59.478 47.619 5.61 0.00 38.82 4.70
2484 3502 2.791004 AGTCGTGTTTAACCGAACTTCG 59.209 45.455 4.07 4.07 40.07 3.79
2485 3503 5.888412 TTAGTCGTGTTTAACCGAACTTC 57.112 39.130 9.46 0.37 34.47 3.01
2486 3504 6.849588 ATTTAGTCGTGTTTAACCGAACTT 57.150 33.333 9.46 3.57 34.47 2.66
2487 3505 6.849588 AATTTAGTCGTGTTTAACCGAACT 57.150 33.333 9.46 10.82 34.47 3.01
2488 3506 6.298336 CGAAATTTAGTCGTGTTTAACCGAAC 59.702 38.462 9.46 5.76 34.47 3.95
2489 3507 6.199908 TCGAAATTTAGTCGTGTTTAACCGAA 59.800 34.615 9.46 0.00 39.52 4.30
2490 3508 5.689514 TCGAAATTTAGTCGTGTTTAACCGA 59.310 36.000 4.97 4.97 39.52 4.69
2491 3509 5.780269 GTCGAAATTTAGTCGTGTTTAACCG 59.220 40.000 0.00 0.00 39.52 4.44
2492 3510 6.648502 TGTCGAAATTTAGTCGTGTTTAACC 58.351 36.000 0.00 0.00 39.52 2.85
2493 3511 8.456032 GTTTGTCGAAATTTAGTCGTGTTTAAC 58.544 33.333 0.00 0.00 39.52 2.01
2494 3512 8.389603 AGTTTGTCGAAATTTAGTCGTGTTTAA 58.610 29.630 0.00 0.00 39.52 1.52
2495 3513 7.908230 AGTTTGTCGAAATTTAGTCGTGTTTA 58.092 30.769 0.00 0.00 39.52 2.01
2496 3514 6.778108 AGTTTGTCGAAATTTAGTCGTGTTT 58.222 32.000 0.00 0.00 39.52 2.83
2497 3515 6.354039 AGTTTGTCGAAATTTAGTCGTGTT 57.646 33.333 0.00 0.00 39.52 3.32
2498 3516 5.978934 AGTTTGTCGAAATTTAGTCGTGT 57.021 34.783 0.00 0.00 39.52 4.49
2499 3517 6.140108 CCAAAGTTTGTCGAAATTTAGTCGTG 59.860 38.462 14.36 0.00 39.52 4.35
2500 3518 6.196571 CCAAAGTTTGTCGAAATTTAGTCGT 58.803 36.000 14.36 0.00 39.52 4.34
2501 3519 5.115021 GCCAAAGTTTGTCGAAATTTAGTCG 59.885 40.000 14.36 0.00 34.10 4.18
2502 3520 5.974751 TGCCAAAGTTTGTCGAAATTTAGTC 59.025 36.000 14.36 0.00 34.10 2.59
2503 3521 5.897050 TGCCAAAGTTTGTCGAAATTTAGT 58.103 33.333 14.36 0.00 34.10 2.24
2504 3522 8.687824 ATATGCCAAAGTTTGTCGAAATTTAG 57.312 30.769 14.36 0.00 34.10 1.85
2506 3524 9.651913 AATATATGCCAAAGTTTGTCGAAATTT 57.348 25.926 14.36 0.00 36.07 1.82
2507 3525 9.086336 CAATATATGCCAAAGTTTGTCGAAATT 57.914 29.630 14.36 4.66 0.00 1.82
2508 3526 8.465999 TCAATATATGCCAAAGTTTGTCGAAAT 58.534 29.630 14.36 4.41 0.00 2.17
2509 3527 7.753132 GTCAATATATGCCAAAGTTTGTCGAAA 59.247 33.333 14.36 0.00 0.00 3.46
2510 3528 7.094592 TGTCAATATATGCCAAAGTTTGTCGAA 60.095 33.333 14.36 0.00 0.00 3.71
2511 3529 6.372937 TGTCAATATATGCCAAAGTTTGTCGA 59.627 34.615 14.36 0.00 0.00 4.20
2512 3530 6.550843 TGTCAATATATGCCAAAGTTTGTCG 58.449 36.000 14.36 1.47 0.00 4.35
2513 3531 7.975616 ACATGTCAATATATGCCAAAGTTTGTC 59.024 33.333 14.36 1.98 0.00 3.18
2514 3532 7.839907 ACATGTCAATATATGCCAAAGTTTGT 58.160 30.769 14.36 0.00 0.00 2.83
2515 3533 8.706492 AACATGTCAATATATGCCAAAGTTTG 57.294 30.769 8.73 8.73 0.00 2.93
2516 3534 7.701924 CGAACATGTCAATATATGCCAAAGTTT 59.298 33.333 0.00 0.00 0.00 2.66
2517 3535 7.195646 CGAACATGTCAATATATGCCAAAGTT 58.804 34.615 0.00 0.00 0.00 2.66
2518 3536 6.728200 CGAACATGTCAATATATGCCAAAGT 58.272 36.000 0.00 0.00 0.00 2.66
2519 3537 5.626543 GCGAACATGTCAATATATGCCAAAG 59.373 40.000 0.00 0.00 0.00 2.77
2520 3538 5.518812 GCGAACATGTCAATATATGCCAAA 58.481 37.500 0.00 0.00 0.00 3.28
2521 3539 4.319405 CGCGAACATGTCAATATATGCCAA 60.319 41.667 0.00 0.00 0.00 4.52
2522 3540 3.186205 CGCGAACATGTCAATATATGCCA 59.814 43.478 0.00 0.00 0.00 4.92
2523 3541 3.431912 TCGCGAACATGTCAATATATGCC 59.568 43.478 6.20 0.00 0.00 4.40
2524 3542 4.386230 GTCGCGAACATGTCAATATATGC 58.614 43.478 12.06 0.00 0.00 3.14
2525 3543 4.618300 CGTCGCGAACATGTCAATATATG 58.382 43.478 12.06 0.00 0.00 1.78
2526 3544 3.121279 GCGTCGCGAACATGTCAATATAT 59.879 43.478 12.06 0.00 0.00 0.86
2527 3545 2.469886 GCGTCGCGAACATGTCAATATA 59.530 45.455 12.06 0.00 0.00 0.86
2528 3546 1.257936 GCGTCGCGAACATGTCAATAT 59.742 47.619 12.06 0.00 0.00 1.28
2529 3547 0.643310 GCGTCGCGAACATGTCAATA 59.357 50.000 12.06 0.00 0.00 1.90
2530 3548 1.419922 GCGTCGCGAACATGTCAAT 59.580 52.632 12.06 0.00 0.00 2.57
2531 3549 2.850404 GCGTCGCGAACATGTCAA 59.150 55.556 12.06 0.00 0.00 3.18
2542 3560 1.270971 TTTTCTATGTACCGCGTCGC 58.729 50.000 7.29 7.29 0.00 5.19
2543 3561 6.580041 AGTTATATTTTCTATGTACCGCGTCG 59.420 38.462 4.92 0.00 0.00 5.12
2544 3562 7.864307 AGTTATATTTTCTATGTACCGCGTC 57.136 36.000 4.92 0.00 0.00 5.19
2545 3563 9.748708 TTTAGTTATATTTTCTATGTACCGCGT 57.251 29.630 4.92 0.00 0.00 6.01
2571 3589 1.408422 GCGTGCAGCGATTTCTTTTT 58.592 45.000 11.94 0.00 44.77 1.94
2572 3590 3.092081 GCGTGCAGCGATTTCTTTT 57.908 47.368 11.94 0.00 44.77 2.27
2573 3591 4.847255 GCGTGCAGCGATTTCTTT 57.153 50.000 11.94 0.00 44.77 2.52
2583 3601 2.577112 CGACTACTCGGCGTGCAG 60.577 66.667 6.85 7.28 36.16 4.41
2584 3602 3.318539 GACGACTACTCGGCGTGCA 62.319 63.158 6.85 0.00 44.80 4.57
2585 3603 2.576317 GACGACTACTCGGCGTGC 60.576 66.667 6.85 0.00 44.80 5.34
2589 3607 2.021106 CGACGACGACTACTCGGC 59.979 66.667 0.00 0.00 45.36 5.54
2590 3608 1.343147 GACGACGACGACTACTCGG 59.657 63.158 15.32 0.00 44.80 4.63
2591 3609 1.015037 CGACGACGACGACTACTCG 60.015 63.158 15.32 8.52 46.06 4.18
2592 3610 1.295787 GCGACGACGACGACTACTC 60.296 63.158 22.94 0.00 42.66 2.59
2593 3611 2.734673 GGCGACGACGACGACTACT 61.735 63.158 22.94 0.00 42.66 2.57
2594 3612 2.276306 GGCGACGACGACGACTAC 60.276 66.667 22.94 5.31 42.66 2.73
2601 3619 4.124351 GGATGGTGGCGACGACGA 62.124 66.667 12.29 0.00 42.66 4.20
2602 3620 4.129737 AGGATGGTGGCGACGACG 62.130 66.667 2.12 2.12 42.93 5.12
2603 3621 2.202756 GAGGATGGTGGCGACGAC 60.203 66.667 0.00 0.00 0.00 4.34
2604 3622 3.822192 CGAGGATGGTGGCGACGA 61.822 66.667 0.00 0.00 0.00 4.20
2610 3628 4.838152 CGGTGGCGAGGATGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
2630 3648 4.176851 GAGGAGGCCGACGACGAC 62.177 72.222 9.28 0.00 42.66 4.34
2633 3651 3.519930 GAGGAGGAGGCCGACGAC 61.520 72.222 0.00 0.00 0.00 4.34
2634 3652 4.816984 GGAGGAGGAGGCCGACGA 62.817 72.222 0.00 0.00 0.00 4.20
2635 3653 4.824515 AGGAGGAGGAGGCCGACG 62.825 72.222 0.00 0.00 0.00 5.12
2636 3654 2.364448 AAGGAGGAGGAGGCCGAC 60.364 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.