Multiple sequence alignment - TraesCS5D01G521100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G521100 chr5D 100.000 3464 0 0 1 3464 542105132 542108595 0.000000e+00 6397.0
1 TraesCS5D01G521100 chr5D 90.887 1613 85 16 856 2465 542374594 542376147 0.000000e+00 2108.0
2 TraesCS5D01G521100 chr5D 83.243 1480 193 37 989 2451 493912433 493913874 0.000000e+00 1308.0
3 TraesCS5D01G521100 chr5D 82.687 1444 200 30 1027 2451 494079147 494077735 0.000000e+00 1236.0
4 TraesCS5D01G521100 chr5D 89.020 255 18 2 2806 3050 279293124 279292870 1.210000e-79 307.0
5 TraesCS5D01G521100 chr5D 87.755 245 28 2 2808 3051 565093841 565094084 5.660000e-73 285.0
6 TraesCS5D01G521100 chr5D 84.871 271 40 1 2531 2801 433513134 433513403 4.410000e-69 272.0
7 TraesCS5D01G521100 chr5D 85.115 262 38 1 2540 2801 431891921 431891661 2.050000e-67 267.0
8 TraesCS5D01G521100 chr5D 88.732 213 7 5 3026 3235 542150487 542150685 9.600000e-61 244.0
9 TraesCS5D01G521100 chr5D 94.872 39 2 0 804 842 542374560 542374598 1.040000e-05 62.1
10 TraesCS5D01G521100 chr4A 93.762 1603 96 2 856 2455 626954747 626953146 0.000000e+00 2403.0
11 TraesCS5D01G521100 chr4A 93.408 804 49 4 1 802 596718619 596717818 0.000000e+00 1188.0
12 TraesCS5D01G521100 chr4A 85.393 267 38 1 2533 2799 611467304 611467569 3.410000e-70 276.0
13 TraesCS5D01G521100 chr5B 92.482 1676 108 5 856 2526 684085023 684086685 0.000000e+00 2381.0
14 TraesCS5D01G521100 chr5B 82.859 1546 197 40 989 2515 610282434 610280938 0.000000e+00 1325.0
15 TraesCS5D01G521100 chr5B 82.784 1487 197 39 989 2456 610107946 610106500 0.000000e+00 1273.0
16 TraesCS5D01G521100 chr5B 82.524 1442 206 26 1027 2451 610205896 610204484 0.000000e+00 1225.0
17 TraesCS5D01G521100 chr5B 87.816 673 31 14 2806 3462 684087731 684088368 0.000000e+00 741.0
18 TraesCS5D01G521100 chr5A 82.120 1566 212 42 958 2504 617097366 617095850 0.000000e+00 1279.0
19 TraesCS5D01G521100 chr5A 82.907 1445 195 33 1027 2451 617123660 617122248 0.000000e+00 1253.0
20 TraesCS5D01G521100 chr5A 93.416 805 50 3 1 804 547817873 547818675 0.000000e+00 1190.0
21 TraesCS5D01G521100 chr2D 94.665 806 40 3 1 806 519333186 519333988 0.000000e+00 1247.0
22 TraesCS5D01G521100 chr2D 88.583 254 19 2 2806 3049 455942478 455942225 2.020000e-77 300.0
23 TraesCS5D01G521100 chr2D 88.211 246 27 2 2809 3054 165732664 165732421 3.380000e-75 292.0
24 TraesCS5D01G521100 chr7D 93.773 803 48 2 1 802 634181459 634180658 0.000000e+00 1205.0
25 TraesCS5D01G521100 chr7D 93.657 804 50 1 1 804 47219230 47218428 0.000000e+00 1201.0
26 TraesCS5D01G521100 chr7D 93.292 805 52 2 1 805 92802311 92803113 0.000000e+00 1186.0
27 TraesCS5D01G521100 chr7D 87.649 251 29 2 2806 3055 415950080 415949831 1.220000e-74 291.0
28 TraesCS5D01G521100 chr7D 85.978 271 37 1 2531 2801 519788296 519788565 4.370000e-74 289.0
29 TraesCS5D01G521100 chr7D 92.857 196 13 1 2806 3001 595665719 595665913 2.040000e-72 283.0
30 TraesCS5D01G521100 chr7D 85.944 249 30 4 2806 3049 63638491 63638243 9.540000e-66 261.0
31 TraesCS5D01G521100 chr7D 75.665 263 43 16 2809 3055 508498652 508498395 1.020000e-20 111.0
32 TraesCS5D01G521100 chr6D 92.937 807 54 3 1 805 283802443 283803248 0.000000e+00 1171.0
33 TraesCS5D01G521100 chr6D 85.609 271 38 1 2531 2801 347157151 347157420 2.040000e-72 283.0
34 TraesCS5D01G521100 chr6D 84.387 269 39 2 2533 2801 375294195 375294460 9.540000e-66 261.0
35 TraesCS5D01G521100 chr1D 93.026 803 52 2 3 805 401720138 401719340 0.000000e+00 1170.0
36 TraesCS5D01G521100 chr4D 93.038 790 50 4 1 788 18740020 18739234 0.000000e+00 1149.0
37 TraesCS5D01G521100 chr3D 89.020 255 17 4 2806 3051 305497159 305497411 4.340000e-79 305.0
38 TraesCS5D01G521100 chr1A 86.347 271 36 1 2531 2801 488974106 488974375 9.400000e-76 294.0
39 TraesCS5D01G521100 chr3B 87.805 246 27 1 2806 3048 78837346 78837101 5.660000e-73 285.0
40 TraesCS5D01G521100 chr6B 84.364 275 39 2 2529 2801 561837235 561837507 2.050000e-67 267.0
41 TraesCS5D01G521100 chr6A 84.502 271 41 1 2531 2801 516678069 516678338 2.050000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G521100 chr5D 542105132 542108595 3463 False 6397.00 6397 100.0000 1 3464 1 chr5D.!!$F3 3463
1 TraesCS5D01G521100 chr5D 493912433 493913874 1441 False 1308.00 1308 83.2430 989 2451 1 chr5D.!!$F2 1462
2 TraesCS5D01G521100 chr5D 494077735 494079147 1412 True 1236.00 1236 82.6870 1027 2451 1 chr5D.!!$R3 1424
3 TraesCS5D01G521100 chr5D 542374560 542376147 1587 False 1085.05 2108 92.8795 804 2465 2 chr5D.!!$F6 1661
4 TraesCS5D01G521100 chr4A 626953146 626954747 1601 True 2403.00 2403 93.7620 856 2455 1 chr4A.!!$R2 1599
5 TraesCS5D01G521100 chr4A 596717818 596718619 801 True 1188.00 1188 93.4080 1 802 1 chr4A.!!$R1 801
6 TraesCS5D01G521100 chr5B 684085023 684088368 3345 False 1561.00 2381 90.1490 856 3462 2 chr5B.!!$F1 2606
7 TraesCS5D01G521100 chr5B 610280938 610282434 1496 True 1325.00 1325 82.8590 989 2515 1 chr5B.!!$R3 1526
8 TraesCS5D01G521100 chr5B 610106500 610107946 1446 True 1273.00 1273 82.7840 989 2456 1 chr5B.!!$R1 1467
9 TraesCS5D01G521100 chr5B 610204484 610205896 1412 True 1225.00 1225 82.5240 1027 2451 1 chr5B.!!$R2 1424
10 TraesCS5D01G521100 chr5A 617095850 617097366 1516 True 1279.00 1279 82.1200 958 2504 1 chr5A.!!$R1 1546
11 TraesCS5D01G521100 chr5A 617122248 617123660 1412 True 1253.00 1253 82.9070 1027 2451 1 chr5A.!!$R2 1424
12 TraesCS5D01G521100 chr5A 547817873 547818675 802 False 1190.00 1190 93.4160 1 804 1 chr5A.!!$F1 803
13 TraesCS5D01G521100 chr2D 519333186 519333988 802 False 1247.00 1247 94.6650 1 806 1 chr2D.!!$F1 805
14 TraesCS5D01G521100 chr7D 634180658 634181459 801 True 1205.00 1205 93.7730 1 802 1 chr7D.!!$R5 801
15 TraesCS5D01G521100 chr7D 47218428 47219230 802 True 1201.00 1201 93.6570 1 804 1 chr7D.!!$R1 803
16 TraesCS5D01G521100 chr7D 92802311 92803113 802 False 1186.00 1186 93.2920 1 805 1 chr7D.!!$F1 804
17 TraesCS5D01G521100 chr6D 283802443 283803248 805 False 1171.00 1171 92.9370 1 805 1 chr6D.!!$F1 804
18 TraesCS5D01G521100 chr1D 401719340 401720138 798 True 1170.00 1170 93.0260 3 805 1 chr1D.!!$R1 802
19 TraesCS5D01G521100 chr4D 18739234 18740020 786 True 1149.00 1149 93.0380 1 788 1 chr4D.!!$R1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 800 0.389948 CGTGGAGTCCCCTTTTCGAG 60.390 60.0 6.74 0.0 35.38 4.04 F
1691 1724 0.307760 GTGTTCAACAGCTTCCACGG 59.692 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 2414 0.250234 CTTCATGCCGAGGTCCTTGA 59.750 55.0 7.82 0.0 0.0 3.02 R
3392 4234 0.035152 TCTGCCGAAACCATGCTGAT 60.035 50.0 0.00 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.175859 TCGATTCCTAGTTCCAAACATGTC 58.824 41.667 0.00 0.00 0.00 3.06
70 71 4.332819 CGATTCCTAGTTCCAAACATGTCC 59.667 45.833 0.00 0.00 0.00 4.02
214 216 4.339247 GTGATCGGGATGAAACCATCAAAT 59.661 41.667 7.59 0.00 42.54 2.32
418 420 6.148948 TGCAGAAATGATTTGGTCTTTAACG 58.851 36.000 0.00 0.00 0.00 3.18
471 473 0.602638 TTCGAGCCACTGCGTTGATT 60.603 50.000 0.00 0.00 44.33 2.57
491 493 2.294979 TCGTATGTGGTCGCTACTCAT 58.705 47.619 5.39 5.39 0.00 2.90
524 527 1.053424 AGGGAGCGTTTGGTTACTGA 58.947 50.000 0.00 0.00 0.00 3.41
552 555 1.676678 GCTGGGAGATGGTAGCACGA 61.677 60.000 0.00 0.00 36.24 4.35
558 561 3.511934 GGGAGATGGTAGCACGAGATATT 59.488 47.826 0.00 0.00 0.00 1.28
563 566 6.219473 AGATGGTAGCACGAGATATTTTCAG 58.781 40.000 0.00 0.00 0.00 3.02
565 568 4.141937 TGGTAGCACGAGATATTTTCAGCT 60.142 41.667 0.00 0.00 35.06 4.24
595 598 5.338056 GGATGGCGGTCATGTAATAGGATAA 60.338 44.000 0.00 0.00 35.97 1.75
646 649 0.958091 CCGGTTGTGGCTTTTCATGA 59.042 50.000 0.00 0.00 0.00 3.07
650 653 2.102252 GGTTGTGGCTTTTCATGACCAA 59.898 45.455 4.44 0.00 33.03 3.67
699 704 4.690748 TGTGAGCTCTCCTTTATTTTCGTG 59.309 41.667 16.19 0.00 0.00 4.35
707 712 5.699458 TCTCCTTTATTTTCGTGTTGAGACC 59.301 40.000 0.00 0.00 0.00 3.85
725 730 3.714798 AGACCCTAAGACCTTGTTGAACA 59.285 43.478 0.00 0.00 0.00 3.18
778 783 1.078848 GTTCTGATGCAGAGGCCGT 60.079 57.895 0.00 0.00 41.75 5.68
795 800 0.389948 CGTGGAGTCCCCTTTTCGAG 60.390 60.000 6.74 0.00 35.38 4.04
848 853 6.202815 GAAGGCATCGAAAAAGTTGAAAAG 57.797 37.500 0.00 0.00 0.00 2.27
849 854 4.620982 AGGCATCGAAAAAGTTGAAAAGG 58.379 39.130 0.00 0.00 0.00 3.11
850 855 3.740832 GGCATCGAAAAAGTTGAAAAGGG 59.259 43.478 0.00 0.00 0.00 3.95
851 856 3.184379 GCATCGAAAAAGTTGAAAAGGGC 59.816 43.478 0.00 0.00 0.00 5.19
852 857 4.367450 CATCGAAAAAGTTGAAAAGGGCA 58.633 39.130 0.00 0.00 0.00 5.36
853 858 4.664150 TCGAAAAAGTTGAAAAGGGCAT 57.336 36.364 0.00 0.00 0.00 4.40
854 859 4.616953 TCGAAAAAGTTGAAAAGGGCATC 58.383 39.130 0.00 0.00 0.00 3.91
949 954 7.010645 ACAAACAACTTGCCCTTTTTAAATACG 59.989 33.333 0.00 0.00 38.75 3.06
1140 1151 2.927856 ACCATCCTCACCACGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1164 1175 3.344215 GCTGCCATCATCCGCTCG 61.344 66.667 0.00 0.00 0.00 5.03
1407 1418 1.283793 CAGCTTTTGGCACTGGTCG 59.716 57.895 0.00 0.00 44.79 4.79
1691 1724 0.307760 GTGTTCAACAGCTTCCACGG 59.692 55.000 0.00 0.00 0.00 4.94
1735 1768 2.004808 CTATCACAGGACGCTCGGCA 62.005 60.000 0.00 0.00 0.00 5.69
2172 2205 2.031919 GGTGTGCCGATGGTCACA 59.968 61.111 8.39 8.39 37.38 3.58
2247 2280 1.004560 AGTGGGTGTCAGCATCACG 60.005 57.895 4.12 0.00 37.02 4.35
2275 2320 3.718210 GACTACGCGGCTTCTGGGG 62.718 68.421 12.47 0.00 0.00 4.96
2276 2321 3.458163 CTACGCGGCTTCTGGGGA 61.458 66.667 12.47 0.00 0.00 4.81
2277 2322 3.432051 CTACGCGGCTTCTGGGGAG 62.432 68.421 12.47 0.00 0.00 4.30
2280 2325 4.785453 GCGGCTTCTGGGGAGGTG 62.785 72.222 0.00 0.00 0.00 4.00
2281 2326 3.003173 CGGCTTCTGGGGAGGTGA 61.003 66.667 0.00 0.00 0.00 4.02
2282 2327 2.370445 CGGCTTCTGGGGAGGTGAT 61.370 63.158 0.00 0.00 0.00 3.06
2283 2328 1.225704 GGCTTCTGGGGAGGTGATG 59.774 63.158 0.00 0.00 0.00 3.07
2284 2329 1.225704 GCTTCTGGGGAGGTGATGG 59.774 63.158 0.00 0.00 0.00 3.51
2285 2330 1.918253 CTTCTGGGGAGGTGATGGG 59.082 63.158 0.00 0.00 0.00 4.00
2286 2331 0.916358 CTTCTGGGGAGGTGATGGGT 60.916 60.000 0.00 0.00 0.00 4.51
2323 2380 3.213506 TCCATTGTTAGATTGATGGGCG 58.786 45.455 0.00 0.00 39.57 6.13
2391 2448 4.323477 AAGGCAAGGTGCGCGGTA 62.323 61.111 8.83 0.00 46.21 4.02
2421 2478 3.546670 GTGGATCTTCGTACAATGACGTC 59.453 47.826 9.11 9.11 43.39 4.34
2424 2481 1.805943 TCTTCGTACAATGACGTCGGA 59.194 47.619 11.62 0.00 43.39 4.55
2467 2524 2.440980 GTAGGACGGCGTAGGGGT 60.441 66.667 14.74 0.00 0.00 4.95
2504 2564 3.425422 GCATCCGGCCAACTGATC 58.575 61.111 2.24 0.00 36.11 2.92
2512 2572 2.547855 CCGGCCAACTGATCGATATTGA 60.548 50.000 14.87 0.00 0.00 2.57
2526 2586 3.843999 GATATTGATCGCAGGTCTCCTC 58.156 50.000 0.00 0.00 0.00 3.71
2527 2587 1.786937 ATTGATCGCAGGTCTCCTCT 58.213 50.000 0.00 0.00 0.00 3.69
2528 2588 1.561643 TTGATCGCAGGTCTCCTCTT 58.438 50.000 0.00 0.00 0.00 2.85
2529 2589 0.820226 TGATCGCAGGTCTCCTCTTG 59.180 55.000 0.00 0.00 0.00 3.02
2531 2591 0.820871 ATCGCAGGTCTCCTCTTGTC 59.179 55.000 0.00 0.00 0.00 3.18
2532 2592 0.539669 TCGCAGGTCTCCTCTTGTCA 60.540 55.000 0.00 0.00 0.00 3.58
2533 2593 0.534412 CGCAGGTCTCCTCTTGTCAT 59.466 55.000 0.00 0.00 0.00 3.06
2536 2596 2.102252 GCAGGTCTCCTCTTGTCATAGG 59.898 54.545 0.00 0.00 0.00 2.57
2537 2597 2.102252 CAGGTCTCCTCTTGTCATAGGC 59.898 54.545 0.00 0.00 32.55 3.93
2538 2598 2.023501 AGGTCTCCTCTTGTCATAGGCT 60.024 50.000 0.00 0.00 32.55 4.58
2540 2600 3.295973 GTCTCCTCTTGTCATAGGCTCT 58.704 50.000 0.00 0.00 32.55 4.09
2542 2602 2.293122 CTCCTCTTGTCATAGGCTCTCG 59.707 54.545 0.00 0.00 32.55 4.04
2544 2604 2.690497 CCTCTTGTCATAGGCTCTCGAA 59.310 50.000 0.00 0.00 0.00 3.71
2545 2605 3.490078 CCTCTTGTCATAGGCTCTCGAAC 60.490 52.174 0.00 0.00 0.00 3.95
2546 2606 3.357203 TCTTGTCATAGGCTCTCGAACT 58.643 45.455 0.00 0.00 0.00 3.01
2547 2607 4.524053 TCTTGTCATAGGCTCTCGAACTA 58.476 43.478 0.00 0.00 0.00 2.24
2548 2608 5.133941 TCTTGTCATAGGCTCTCGAACTAT 58.866 41.667 0.00 0.00 0.00 2.12
2553 2613 5.918011 GTCATAGGCTCTCGAACTATTTCAG 59.082 44.000 0.00 0.00 0.00 3.02
2554 2614 5.828328 TCATAGGCTCTCGAACTATTTCAGA 59.172 40.000 0.00 0.00 0.00 3.27
2555 2615 6.491745 TCATAGGCTCTCGAACTATTTCAGAT 59.508 38.462 0.00 0.00 0.00 2.90
2556 2616 4.942852 AGGCTCTCGAACTATTTCAGATG 58.057 43.478 0.00 0.00 0.00 2.90
2557 2617 4.404073 AGGCTCTCGAACTATTTCAGATGT 59.596 41.667 0.00 0.00 0.00 3.06
2558 2618 4.505922 GGCTCTCGAACTATTTCAGATGTG 59.494 45.833 0.00 0.00 0.00 3.21
2559 2619 5.105752 GCTCTCGAACTATTTCAGATGTGT 58.894 41.667 0.00 0.00 0.00 3.72
2560 2620 5.231147 GCTCTCGAACTATTTCAGATGTGTC 59.769 44.000 0.00 0.00 0.00 3.67
2562 2622 6.867550 TCTCGAACTATTTCAGATGTGTCAT 58.132 36.000 0.00 0.00 0.00 3.06
2563 2623 6.753744 TCTCGAACTATTTCAGATGTGTCATG 59.246 38.462 0.00 0.00 0.00 3.07
2564 2624 6.398095 TCGAACTATTTCAGATGTGTCATGT 58.602 36.000 0.00 0.00 0.00 3.21
2566 2626 7.702348 TCGAACTATTTCAGATGTGTCATGTAG 59.298 37.037 0.00 0.00 0.00 2.74
2567 2627 7.043125 CGAACTATTTCAGATGTGTCATGTAGG 60.043 40.741 0.00 0.00 0.00 3.18
2568 2628 7.187824 ACTATTTCAGATGTGTCATGTAGGT 57.812 36.000 0.00 0.00 0.00 3.08
2569 2629 7.624549 ACTATTTCAGATGTGTCATGTAGGTT 58.375 34.615 0.00 0.00 0.00 3.50
2570 2630 6.992063 ATTTCAGATGTGTCATGTAGGTTC 57.008 37.500 0.00 0.00 0.00 3.62
2571 2631 5.745312 TTCAGATGTGTCATGTAGGTTCT 57.255 39.130 0.00 0.00 0.00 3.01
2574 2634 7.239763 TCAGATGTGTCATGTAGGTTCTTAA 57.760 36.000 0.00 0.00 0.00 1.85
2575 2635 7.676004 TCAGATGTGTCATGTAGGTTCTTAAA 58.324 34.615 0.00 0.00 0.00 1.52
2576 2636 8.321353 TCAGATGTGTCATGTAGGTTCTTAAAT 58.679 33.333 0.00 0.00 0.00 1.40
2581 2641 9.952030 TGTGTCATGTAGGTTCTTAAATTATGA 57.048 29.630 0.00 0.00 0.00 2.15
2610 2670 5.076182 TGTCATCCAAATCCTTAAAGTGCA 58.924 37.500 0.00 0.00 0.00 4.57
2611 2671 5.538053 TGTCATCCAAATCCTTAAAGTGCAA 59.462 36.000 0.00 0.00 0.00 4.08
2613 2673 7.395772 TGTCATCCAAATCCTTAAAGTGCAATA 59.604 33.333 0.00 0.00 0.00 1.90
2614 2674 8.416329 GTCATCCAAATCCTTAAAGTGCAATAT 58.584 33.333 0.00 0.00 0.00 1.28
2618 2678 9.420118 TCCAAATCCTTAAAGTGCAATATATGT 57.580 29.630 0.00 0.00 0.00 2.29
2619 2679 9.467258 CCAAATCCTTAAAGTGCAATATATGTG 57.533 33.333 0.00 0.00 0.00 3.21
2622 2682 8.978874 ATCCTTAAAGTGCAATATATGTGTCA 57.021 30.769 0.00 0.00 0.00 3.58
2623 2683 8.978874 TCCTTAAAGTGCAATATATGTGTCAT 57.021 30.769 0.00 0.00 0.00 3.06
2624 2684 9.056005 TCCTTAAAGTGCAATATATGTGTCATC 57.944 33.333 0.00 0.00 0.00 2.92
2625 2685 8.292448 CCTTAAAGTGCAATATATGTGTCATCC 58.708 37.037 0.00 0.00 0.00 3.51
2626 2686 8.978874 TTAAAGTGCAATATATGTGTCATCCT 57.021 30.769 0.00 0.00 0.00 3.24
2627 2687 7.886629 AAAGTGCAATATATGTGTCATCCTT 57.113 32.000 0.00 0.00 0.00 3.36
2628 2688 6.872628 AGTGCAATATATGTGTCATCCTTG 57.127 37.500 0.00 0.00 0.00 3.61
2629 2689 6.359804 AGTGCAATATATGTGTCATCCTTGT 58.640 36.000 0.00 0.00 0.00 3.16
2630 2690 6.484643 AGTGCAATATATGTGTCATCCTTGTC 59.515 38.462 0.00 0.00 0.00 3.18
2631 2691 5.764686 TGCAATATATGTGTCATCCTTGTCC 59.235 40.000 0.00 0.00 0.00 4.02
2632 2692 6.000219 GCAATATATGTGTCATCCTTGTCCT 59.000 40.000 0.00 0.00 0.00 3.85
2633 2693 6.488006 GCAATATATGTGTCATCCTTGTCCTT 59.512 38.462 0.00 0.00 0.00 3.36
2634 2694 7.521099 GCAATATATGTGTCATCCTTGTCCTTG 60.521 40.741 0.00 0.00 0.00 3.61
2636 2696 3.855255 TGTGTCATCCTTGTCCTTGAA 57.145 42.857 0.00 0.00 0.00 2.69
2637 2697 3.476552 TGTGTCATCCTTGTCCTTGAAC 58.523 45.455 0.00 0.00 0.00 3.18
2638 2698 3.136443 TGTGTCATCCTTGTCCTTGAACT 59.864 43.478 0.00 0.00 0.00 3.01
2639 2699 4.346709 TGTGTCATCCTTGTCCTTGAACTA 59.653 41.667 0.00 0.00 0.00 2.24
2642 2702 6.431234 GTGTCATCCTTGTCCTTGAACTATTT 59.569 38.462 0.00 0.00 0.00 1.40
2643 2703 6.655003 TGTCATCCTTGTCCTTGAACTATTTC 59.345 38.462 0.00 0.00 0.00 2.17
2644 2704 6.655003 GTCATCCTTGTCCTTGAACTATTTCA 59.345 38.462 0.00 0.00 40.14 2.69
2655 2715 6.539649 TTGAACTATTTCAAAGGAGTCACG 57.460 37.500 5.83 0.00 46.59 4.35
2656 2716 5.607477 TGAACTATTTCAAAGGAGTCACGT 58.393 37.500 0.00 0.00 38.87 4.49
2657 2717 6.751157 TGAACTATTTCAAAGGAGTCACGTA 58.249 36.000 0.00 0.00 38.87 3.57
2658 2718 6.866770 TGAACTATTTCAAAGGAGTCACGTAG 59.133 38.462 0.00 0.00 38.87 3.51
2661 2721 3.655276 TTCAAAGGAGTCACGTAGGTC 57.345 47.619 0.00 0.00 0.00 3.85
2663 2723 1.893801 CAAAGGAGTCACGTAGGTCCT 59.106 52.381 6.04 6.04 41.42 3.85
2665 2725 1.836802 AGGAGTCACGTAGGTCCTTC 58.163 55.000 0.00 0.00 35.84 3.46
2666 2726 1.075050 AGGAGTCACGTAGGTCCTTCA 59.925 52.381 0.00 0.00 35.84 3.02
2667 2727 1.891150 GGAGTCACGTAGGTCCTTCAA 59.109 52.381 0.00 0.00 0.00 2.69
2668 2728 2.352519 GGAGTCACGTAGGTCCTTCAAC 60.353 54.545 0.00 0.00 0.00 3.18
2669 2729 2.557490 GAGTCACGTAGGTCCTTCAACT 59.443 50.000 0.00 0.00 0.00 3.16
2670 2730 3.755378 GAGTCACGTAGGTCCTTCAACTA 59.245 47.826 0.00 0.00 0.00 2.24
2672 2732 4.771054 AGTCACGTAGGTCCTTCAACTATT 59.229 41.667 0.00 0.00 0.00 1.73
2676 2736 5.577164 CACGTAGGTCCTTCAACTATTTCAG 59.423 44.000 0.00 0.00 0.00 3.02
2677 2737 5.479375 ACGTAGGTCCTTCAACTATTTCAGA 59.521 40.000 0.00 0.00 0.00 3.27
2678 2738 6.037098 CGTAGGTCCTTCAACTATTTCAGAG 58.963 44.000 0.00 0.00 0.00 3.35
2679 2739 5.428184 AGGTCCTTCAACTATTTCAGAGG 57.572 43.478 0.00 0.00 0.00 3.69
2681 2741 4.938226 GGTCCTTCAACTATTTCAGAGGTG 59.062 45.833 0.00 0.00 32.56 4.00
2682 2742 5.513267 GGTCCTTCAACTATTTCAGAGGTGT 60.513 44.000 0.00 0.00 33.13 4.16
2683 2743 5.639931 GTCCTTCAACTATTTCAGAGGTGTC 59.360 44.000 0.00 0.00 33.13 3.67
2684 2744 5.306937 TCCTTCAACTATTTCAGAGGTGTCA 59.693 40.000 0.00 0.00 33.13 3.58
2685 2745 5.409826 CCTTCAACTATTTCAGAGGTGTCAC 59.590 44.000 0.00 0.00 33.13 3.67
2686 2746 5.545063 TCAACTATTTCAGAGGTGTCACA 57.455 39.130 5.12 0.00 33.13 3.58
2687 2747 6.114187 TCAACTATTTCAGAGGTGTCACAT 57.886 37.500 5.12 0.00 33.13 3.21
2688 2748 7.239763 TCAACTATTTCAGAGGTGTCACATA 57.760 36.000 5.12 0.00 33.13 2.29
2690 2750 8.977412 TCAACTATTTCAGAGGTGTCACATATA 58.023 33.333 5.12 0.00 33.13 0.86
2691 2751 9.770097 CAACTATTTCAGAGGTGTCACATATAT 57.230 33.333 5.12 0.00 0.00 0.86
2724 2784 9.581289 TTATTACACTTCAAGGATTTTTGAGGA 57.419 29.630 5.10 0.00 38.25 3.71
2725 2785 5.774498 ACACTTCAAGGATTTTTGAGGAC 57.226 39.130 5.10 0.00 38.25 3.85
2726 2786 4.584743 ACACTTCAAGGATTTTTGAGGACC 59.415 41.667 5.10 0.00 38.25 4.46
2728 2788 4.829492 ACTTCAAGGATTTTTGAGGACCTG 59.171 41.667 0.00 0.00 38.25 4.00
2729 2789 4.453480 TCAAGGATTTTTGAGGACCTGT 57.547 40.909 0.00 0.00 32.39 4.00
2731 2791 6.139679 TCAAGGATTTTTGAGGACCTGTAT 57.860 37.500 0.00 0.00 32.39 2.29
2732 2792 5.945784 TCAAGGATTTTTGAGGACCTGTATG 59.054 40.000 0.00 0.00 32.39 2.39
2734 2794 3.381590 GGATTTTTGAGGACCTGTATGCC 59.618 47.826 0.00 0.00 0.00 4.40
2735 2795 3.517296 TTTTTGAGGACCTGTATGCCA 57.483 42.857 0.00 0.00 0.00 4.92
2736 2796 2.489938 TTTGAGGACCTGTATGCCAC 57.510 50.000 0.00 0.00 0.00 5.01
2737 2797 1.656587 TTGAGGACCTGTATGCCACT 58.343 50.000 0.00 0.00 0.00 4.00
2738 2798 1.656587 TGAGGACCTGTATGCCACTT 58.343 50.000 0.00 0.00 0.00 3.16
2739 2799 1.985159 TGAGGACCTGTATGCCACTTT 59.015 47.619 0.00 0.00 0.00 2.66
2740 2800 2.375174 TGAGGACCTGTATGCCACTTTT 59.625 45.455 0.00 0.00 0.00 2.27
2741 2801 3.010420 GAGGACCTGTATGCCACTTTTC 58.990 50.000 0.00 0.00 0.00 2.29
2742 2802 2.375174 AGGACCTGTATGCCACTTTTCA 59.625 45.455 0.00 0.00 0.00 2.69
2743 2803 3.010584 AGGACCTGTATGCCACTTTTCAT 59.989 43.478 0.00 0.00 0.00 2.57
2744 2804 4.227300 AGGACCTGTATGCCACTTTTCATA 59.773 41.667 0.00 0.00 0.00 2.15
2745 2805 4.576463 GGACCTGTATGCCACTTTTCATAG 59.424 45.833 0.00 0.00 0.00 2.23
2748 2808 6.010219 ACCTGTATGCCACTTTTCATAGTTT 58.990 36.000 0.00 0.00 0.00 2.66
2749 2809 6.071952 ACCTGTATGCCACTTTTCATAGTTTG 60.072 38.462 0.00 0.00 0.00 2.93
2750 2810 6.150976 CCTGTATGCCACTTTTCATAGTTTGA 59.849 38.462 0.00 0.00 0.00 2.69
2751 2811 7.144722 TGTATGCCACTTTTCATAGTTTGAG 57.855 36.000 0.00 0.00 35.27 3.02
2752 2812 5.649782 ATGCCACTTTTCATAGTTTGAGG 57.350 39.130 0.00 0.00 35.27 3.86
2753 2813 4.724399 TGCCACTTTTCATAGTTTGAGGA 58.276 39.130 0.00 0.00 35.27 3.71
2754 2814 4.518970 TGCCACTTTTCATAGTTTGAGGAC 59.481 41.667 0.00 0.00 35.27 3.85
2755 2815 4.082733 GCCACTTTTCATAGTTTGAGGACC 60.083 45.833 0.00 0.00 35.27 4.46
2756 2816 5.316987 CCACTTTTCATAGTTTGAGGACCT 58.683 41.667 0.00 0.00 35.27 3.85
2757 2817 6.472887 CCACTTTTCATAGTTTGAGGACCTA 58.527 40.000 0.00 0.00 35.27 3.08
2758 2818 7.112779 CCACTTTTCATAGTTTGAGGACCTAT 58.887 38.462 0.00 0.00 35.27 2.57
2759 2819 8.265055 CCACTTTTCATAGTTTGAGGACCTATA 58.735 37.037 0.00 0.00 35.27 1.31
2760 2820 9.838339 CACTTTTCATAGTTTGAGGACCTATAT 57.162 33.333 0.00 0.00 35.27 0.86
2761 2821 9.838339 ACTTTTCATAGTTTGAGGACCTATATG 57.162 33.333 0.00 0.00 35.27 1.78
2763 2823 9.832445 TTTTCATAGTTTGAGGACCTATATGAC 57.168 33.333 0.00 0.00 35.27 3.06
2764 2824 8.547481 TTCATAGTTTGAGGACCTATATGACA 57.453 34.615 0.00 0.00 35.27 3.58
2765 2825 7.952671 TCATAGTTTGAGGACCTATATGACAC 58.047 38.462 0.00 0.00 0.00 3.67
2766 2826 5.615925 AGTTTGAGGACCTATATGACACC 57.384 43.478 0.00 0.00 0.00 4.16
2767 2827 5.281314 AGTTTGAGGACCTATATGACACCT 58.719 41.667 0.00 0.00 0.00 4.00
2768 2828 5.726793 AGTTTGAGGACCTATATGACACCTT 59.273 40.000 0.00 0.00 0.00 3.50
2769 2829 5.871396 TTGAGGACCTATATGACACCTTC 57.129 43.478 0.00 0.00 0.00 3.46
2770 2830 3.889538 TGAGGACCTATATGACACCTTCG 59.110 47.826 0.00 0.00 0.00 3.79
2771 2831 3.231818 AGGACCTATATGACACCTTCGG 58.768 50.000 0.00 0.00 0.00 4.30
2772 2832 3.117246 AGGACCTATATGACACCTTCGGA 60.117 47.826 0.00 0.00 0.00 4.55
2773 2833 3.640029 GGACCTATATGACACCTTCGGAA 59.360 47.826 0.00 0.00 0.00 4.30
2774 2834 4.283722 GGACCTATATGACACCTTCGGAAT 59.716 45.833 0.00 0.00 0.00 3.01
2775 2835 5.479375 GGACCTATATGACACCTTCGGAATA 59.521 44.000 0.00 0.00 0.00 1.75
2776 2836 6.350277 GGACCTATATGACACCTTCGGAATAG 60.350 46.154 0.00 0.00 0.00 1.73
2777 2837 6.075984 ACCTATATGACACCTTCGGAATAGT 58.924 40.000 0.00 0.00 0.00 2.12
2778 2838 6.553852 ACCTATATGACACCTTCGGAATAGTT 59.446 38.462 0.00 0.00 0.00 2.24
2779 2839 7.070821 ACCTATATGACACCTTCGGAATAGTTT 59.929 37.037 0.00 0.00 0.00 2.66
2780 2840 7.385205 CCTATATGACACCTTCGGAATAGTTTG 59.615 40.741 0.00 0.00 0.00 2.93
2781 2841 4.610605 TGACACCTTCGGAATAGTTTGA 57.389 40.909 0.00 0.00 0.00 2.69
2782 2842 4.566004 TGACACCTTCGGAATAGTTTGAG 58.434 43.478 0.00 0.00 0.00 3.02
2783 2843 3.933332 GACACCTTCGGAATAGTTTGAGG 59.067 47.826 0.00 0.00 0.00 3.86
2784 2844 3.581332 ACACCTTCGGAATAGTTTGAGGA 59.419 43.478 0.00 0.00 0.00 3.71
2785 2845 3.933332 CACCTTCGGAATAGTTTGAGGAC 59.067 47.826 0.00 0.00 0.00 3.85
2786 2846 3.055312 ACCTTCGGAATAGTTTGAGGACC 60.055 47.826 0.00 0.00 0.00 4.46
2787 2847 3.197983 CCTTCGGAATAGTTTGAGGACCT 59.802 47.826 0.00 0.00 0.00 3.85
2788 2848 4.323562 CCTTCGGAATAGTTTGAGGACCTT 60.324 45.833 0.00 0.00 0.00 3.50
2789 2849 4.202245 TCGGAATAGTTTGAGGACCTTG 57.798 45.455 0.00 0.00 0.00 3.61
2790 2850 3.055385 TCGGAATAGTTTGAGGACCTTGG 60.055 47.826 0.00 0.00 0.00 3.61
2791 2851 3.055385 CGGAATAGTTTGAGGACCTTGGA 60.055 47.826 0.00 0.00 0.00 3.53
2792 2852 4.384208 CGGAATAGTTTGAGGACCTTGGAT 60.384 45.833 0.00 0.00 0.00 3.41
2793 2853 5.163343 CGGAATAGTTTGAGGACCTTGGATA 60.163 44.000 0.00 0.00 0.00 2.59
2794 2854 6.056236 GGAATAGTTTGAGGACCTTGGATAC 58.944 44.000 0.00 0.00 0.00 2.24
2819 3645 9.020731 ACACTTCAAGGATCCGTTTTTATTTAT 57.979 29.630 5.98 0.00 0.00 1.40
3025 3861 8.039603 TGACTTTGATCAAAACTAATACGCAT 57.960 30.769 20.82 0.00 0.00 4.73
3058 3894 5.678955 AACAGAGGGAGTACTGTATTTCC 57.321 43.478 0.00 10.99 44.94 3.13
3059 3895 4.684724 ACAGAGGGAGTACTGTATTTCCA 58.315 43.478 17.61 0.00 44.06 3.53
3063 3899 6.595716 CAGAGGGAGTACTGTATTTCCAAAAG 59.404 42.308 17.61 6.34 0.00 2.27
3185 4021 4.772624 TCGTGAGGGATATAATCTCTTGGG 59.227 45.833 0.00 0.00 41.09 4.12
3241 4083 4.482386 TCGTTGAGTCTTGGTATTCTTCG 58.518 43.478 0.00 0.00 0.00 3.79
3271 4113 2.223294 CGAGTAAGGGTTCAGCTAGACG 60.223 54.545 0.00 0.00 0.00 4.18
3272 4114 3.015327 GAGTAAGGGTTCAGCTAGACGA 58.985 50.000 0.00 0.00 0.00 4.20
3273 4115 2.754002 AGTAAGGGTTCAGCTAGACGAC 59.246 50.000 0.00 0.00 0.00 4.34
3286 4128 5.457148 CAGCTAGACGACATACACATCTTTC 59.543 44.000 0.00 0.00 0.00 2.62
3319 4161 2.348998 CCCTGTCAGGCTGTCACC 59.651 66.667 13.99 2.06 32.73 4.02
3373 4215 5.141182 AGGTCCTTCCTTTTCTTTTCCTTC 58.859 41.667 0.00 0.00 45.67 3.46
3374 4216 4.281182 GGTCCTTCCTTTTCTTTTCCTTCC 59.719 45.833 0.00 0.00 0.00 3.46
3376 4218 4.170053 TCCTTCCTTTTCTTTTCCTTCCCT 59.830 41.667 0.00 0.00 0.00 4.20
3388 4230 2.673258 TCCTTCCCTTGTGTTTTTCCC 58.327 47.619 0.00 0.00 0.00 3.97
3389 4231 2.023888 TCCTTCCCTTGTGTTTTTCCCA 60.024 45.455 0.00 0.00 0.00 4.37
3390 4232 2.365293 CCTTCCCTTGTGTTTTTCCCAG 59.635 50.000 0.00 0.00 0.00 4.45
3391 4233 1.408969 TCCCTTGTGTTTTTCCCAGC 58.591 50.000 0.00 0.00 0.00 4.85
3392 4234 1.118838 CCCTTGTGTTTTTCCCAGCA 58.881 50.000 0.00 0.00 0.00 4.41
3393 4235 1.693606 CCCTTGTGTTTTTCCCAGCAT 59.306 47.619 0.00 0.00 0.00 3.79
3394 4236 2.289010 CCCTTGTGTTTTTCCCAGCATC 60.289 50.000 0.00 0.00 0.00 3.91
3395 4237 2.364970 CCTTGTGTTTTTCCCAGCATCA 59.635 45.455 0.00 0.00 0.00 3.07
3396 4238 3.553508 CCTTGTGTTTTTCCCAGCATCAG 60.554 47.826 0.00 0.00 0.00 2.90
3431 4273 1.811266 CTTGGGTGCAGGACGATCG 60.811 63.158 14.88 14.88 0.00 3.69
3443 4285 0.534203 GACGATCGAGGAGGCTCTCT 60.534 60.000 24.34 9.80 0.00 3.10
3454 4296 5.570320 GAGGAGGCTCTCTAGATTGATACT 58.430 45.833 15.23 0.00 0.00 2.12
3455 4297 5.570320 AGGAGGCTCTCTAGATTGATACTC 58.430 45.833 15.23 0.00 0.00 2.59
3462 4304 9.066892 GGCTCTCTAGATTGATACTCCTATATG 57.933 40.741 0.00 0.00 0.00 1.78
3463 4305 8.567948 GCTCTCTAGATTGATACTCCTATATGC 58.432 40.741 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.644861 AGGAACTTTAACAGCCCGG 57.355 52.632 0.00 0.00 27.25 5.73
144 146 7.654116 CCTGTCCAATTACGTTTTACCAAAATT 59.346 33.333 0.00 0.00 32.22 1.82
146 148 6.320672 TCCTGTCCAATTACGTTTTACCAAAA 59.679 34.615 0.00 0.00 0.00 2.44
152 154 7.844009 AGTAGATCCTGTCCAATTACGTTTTA 58.156 34.615 0.00 0.00 0.00 1.52
214 216 3.492337 ACGGGCAATCAAGAAAAAGGTA 58.508 40.909 0.00 0.00 0.00 3.08
471 473 1.741528 TGAGTAGCGACCACATACGA 58.258 50.000 0.00 0.00 0.00 3.43
491 493 3.089874 CCCTGGCCTCCATCGGAA 61.090 66.667 3.32 0.00 30.82 4.30
524 527 1.051812 CATCTCCCAGCGGGTAGATT 58.948 55.000 8.26 0.00 44.74 2.40
552 555 5.361857 CCATCCAAACCAGCTGAAAATATCT 59.638 40.000 17.39 0.00 0.00 1.98
558 561 0.968405 GCCATCCAAACCAGCTGAAA 59.032 50.000 17.39 0.00 0.00 2.69
563 566 2.676471 ACCGCCATCCAAACCAGC 60.676 61.111 0.00 0.00 0.00 4.85
565 568 0.964860 CATGACCGCCATCCAAACCA 60.965 55.000 0.00 0.00 31.94 3.67
595 598 6.613153 AGAGAGACAGGTAAACTAATTGCT 57.387 37.500 0.00 0.00 0.00 3.91
699 704 4.065789 CAACAAGGTCTTAGGGTCTCAAC 58.934 47.826 0.00 0.00 0.00 3.18
778 783 1.724545 TTCTCGAAAAGGGGACTCCA 58.275 50.000 0.00 0.00 42.68 3.86
807 812 1.603456 TCGCATGCAAGAGTTTGGAA 58.397 45.000 19.57 0.00 38.19 3.53
809 814 1.401931 CCTTCGCATGCAAGAGTTTGG 60.402 52.381 23.16 9.28 34.79 3.28
837 842 5.104982 TGACTTTGATGCCCTTTTCAACTTT 60.105 36.000 0.00 0.00 31.87 2.66
838 843 4.405358 TGACTTTGATGCCCTTTTCAACTT 59.595 37.500 0.00 0.00 31.87 2.66
839 844 3.960102 TGACTTTGATGCCCTTTTCAACT 59.040 39.130 0.00 0.00 31.87 3.16
840 845 4.037923 TCTGACTTTGATGCCCTTTTCAAC 59.962 41.667 0.00 0.00 31.87 3.18
841 846 4.214310 TCTGACTTTGATGCCCTTTTCAA 58.786 39.130 0.00 0.00 0.00 2.69
842 847 3.831323 TCTGACTTTGATGCCCTTTTCA 58.169 40.909 0.00 0.00 0.00 2.69
843 848 4.853924 TTCTGACTTTGATGCCCTTTTC 57.146 40.909 0.00 0.00 0.00 2.29
844 849 4.834496 TGATTCTGACTTTGATGCCCTTTT 59.166 37.500 0.00 0.00 0.00 2.27
845 850 4.410099 TGATTCTGACTTTGATGCCCTTT 58.590 39.130 0.00 0.00 0.00 3.11
846 851 4.038271 TGATTCTGACTTTGATGCCCTT 57.962 40.909 0.00 0.00 0.00 3.95
847 852 3.726557 TGATTCTGACTTTGATGCCCT 57.273 42.857 0.00 0.00 0.00 5.19
848 853 3.428589 GCTTGATTCTGACTTTGATGCCC 60.429 47.826 0.00 0.00 0.00 5.36
849 854 3.428589 GGCTTGATTCTGACTTTGATGCC 60.429 47.826 0.00 0.00 0.00 4.40
850 855 3.442977 AGGCTTGATTCTGACTTTGATGC 59.557 43.478 0.00 0.00 0.00 3.91
851 856 4.942483 AGAGGCTTGATTCTGACTTTGATG 59.058 41.667 0.00 0.00 0.00 3.07
852 857 5.176741 AGAGGCTTGATTCTGACTTTGAT 57.823 39.130 0.00 0.00 0.00 2.57
853 858 4.630644 AGAGGCTTGATTCTGACTTTGA 57.369 40.909 0.00 0.00 0.00 2.69
854 859 6.808008 TTAAGAGGCTTGATTCTGACTTTG 57.192 37.500 0.00 0.00 0.00 2.77
887 892 1.135632 CGTCCTCGAGAGTCCACTTTC 60.136 57.143 15.71 0.00 39.71 2.62
949 954 2.178890 CGGAGCAGGAGCAATCAGC 61.179 63.158 0.00 0.00 45.49 4.26
978 986 2.510238 GGCTAGCTGCGTGTCTGG 60.510 66.667 15.72 0.00 44.05 3.86
1140 1151 0.745845 GGATGATGGCAGCGTTGACT 60.746 55.000 6.68 0.00 31.73 3.41
1455 1488 3.124270 CGCGCCAACATGCTGGTA 61.124 61.111 16.37 0.00 38.86 3.25
1815 1848 4.435436 CGTAGGCAGCTGTCCGCA 62.435 66.667 16.31 7.47 42.61 5.69
1943 1976 0.882927 CACCCACACGAAATCCACGT 60.883 55.000 0.00 0.00 44.83 4.49
2172 2205 0.250467 GATCTGCATACCGTGGCCAT 60.250 55.000 9.72 0.00 0.00 4.40
2178 2211 0.390860 GGAGCTGATCTGCATACCGT 59.609 55.000 24.33 4.53 32.82 4.83
2266 2299 1.225704 CCATCACCTCCCCAGAAGC 59.774 63.158 0.00 0.00 0.00 3.86
2275 2320 1.690219 ATCGCCTCACCCATCACCTC 61.690 60.000 0.00 0.00 0.00 3.85
2276 2321 1.690219 GATCGCCTCACCCATCACCT 61.690 60.000 0.00 0.00 0.00 4.00
2277 2322 1.227674 GATCGCCTCACCCATCACC 60.228 63.158 0.00 0.00 0.00 4.02
2278 2323 1.592669 CGATCGCCTCACCCATCAC 60.593 63.158 0.26 0.00 0.00 3.06
2279 2324 2.814604 CGATCGCCTCACCCATCA 59.185 61.111 0.26 0.00 0.00 3.07
2280 2325 2.663188 GCGATCGCCTCACCCATC 60.663 66.667 29.48 0.00 34.56 3.51
2281 2326 3.157252 AGCGATCGCCTCACCCAT 61.157 61.111 34.89 12.56 43.17 4.00
2282 2327 4.147449 CAGCGATCGCCTCACCCA 62.147 66.667 34.89 0.00 43.17 4.51
2283 2328 2.650813 ATTCAGCGATCGCCTCACCC 62.651 60.000 34.89 7.53 43.17 4.61
2284 2329 1.218230 GATTCAGCGATCGCCTCACC 61.218 60.000 34.89 18.45 43.17 4.02
2285 2330 1.218230 GGATTCAGCGATCGCCTCAC 61.218 60.000 34.89 21.57 43.17 3.51
2286 2331 1.068083 GGATTCAGCGATCGCCTCA 59.932 57.895 34.89 19.78 43.17 3.86
2323 2380 4.500116 GTCGCCCTCCTCGCTGTC 62.500 72.222 0.00 0.00 0.00 3.51
2357 2414 0.250234 CTTCATGCCGAGGTCCTTGA 59.750 55.000 7.82 0.00 0.00 3.02
2391 2448 1.546961 ACGAAGATCCACCGTTCTCT 58.453 50.000 0.00 0.00 32.03 3.10
2421 2478 0.526524 GCTCGTCCATCAGACTTCCG 60.527 60.000 0.00 0.00 43.91 4.30
2424 2481 1.550327 TCAGCTCGTCCATCAGACTT 58.450 50.000 0.00 0.00 43.91 3.01
2467 2524 0.250295 CTTCTCCAACCTTCACGGCA 60.250 55.000 0.00 0.00 35.61 5.69
2504 2564 3.671971 GAGGAGACCTGCGATCAATATCG 60.672 52.174 3.49 3.49 45.48 2.92
2512 2572 0.820871 GACAAGAGGAGACCTGCGAT 59.179 55.000 0.00 0.00 31.76 4.58
2522 2582 2.092375 TCGAGAGCCTATGACAAGAGGA 60.092 50.000 10.30 0.00 36.88 3.71
2526 2586 3.791973 AGTTCGAGAGCCTATGACAAG 57.208 47.619 0.00 0.00 0.00 3.16
2527 2587 5.854010 AATAGTTCGAGAGCCTATGACAA 57.146 39.130 0.00 0.00 0.00 3.18
2528 2588 5.359860 TGAAATAGTTCGAGAGCCTATGACA 59.640 40.000 0.00 0.00 36.46 3.58
2529 2589 5.833082 TGAAATAGTTCGAGAGCCTATGAC 58.167 41.667 0.00 0.00 36.46 3.06
2531 2591 6.078202 TCTGAAATAGTTCGAGAGCCTATG 57.922 41.667 0.00 0.00 36.46 2.23
2532 2592 6.266558 ACATCTGAAATAGTTCGAGAGCCTAT 59.733 38.462 0.00 0.00 36.46 2.57
2533 2593 5.594725 ACATCTGAAATAGTTCGAGAGCCTA 59.405 40.000 0.00 0.00 36.46 3.93
2536 2596 5.105752 ACACATCTGAAATAGTTCGAGAGC 58.894 41.667 0.00 0.00 36.46 4.09
2537 2597 6.325596 TGACACATCTGAAATAGTTCGAGAG 58.674 40.000 0.00 0.00 36.46 3.20
2538 2598 6.267496 TGACACATCTGAAATAGTTCGAGA 57.733 37.500 0.00 3.45 36.46 4.04
2540 2600 6.398095 ACATGACACATCTGAAATAGTTCGA 58.602 36.000 0.00 0.00 36.46 3.71
2542 2602 7.766278 ACCTACATGACACATCTGAAATAGTTC 59.234 37.037 0.00 0.00 0.00 3.01
2544 2604 7.187824 ACCTACATGACACATCTGAAATAGT 57.812 36.000 0.00 0.00 0.00 2.12
2545 2605 7.984050 AGAACCTACATGACACATCTGAAATAG 59.016 37.037 0.00 0.00 0.00 1.73
2546 2606 7.851228 AGAACCTACATGACACATCTGAAATA 58.149 34.615 0.00 0.00 0.00 1.40
2547 2607 6.715280 AGAACCTACATGACACATCTGAAAT 58.285 36.000 0.00 0.00 0.00 2.17
2548 2608 6.114187 AGAACCTACATGACACATCTGAAA 57.886 37.500 0.00 0.00 0.00 2.69
2555 2615 9.952030 TCATAATTTAAGAACCTACATGACACA 57.048 29.630 0.00 0.00 0.00 3.72
2582 2642 9.492973 CACTTTAAGGATTTGGATGACAATTTT 57.507 29.630 0.00 0.00 39.21 1.82
2583 2643 7.603784 GCACTTTAAGGATTTGGATGACAATTT 59.396 33.333 0.00 0.00 39.21 1.82
2584 2644 7.099120 GCACTTTAAGGATTTGGATGACAATT 58.901 34.615 0.00 0.00 39.21 2.32
2586 2646 5.538053 TGCACTTTAAGGATTTGGATGACAA 59.462 36.000 0.00 0.00 37.28 3.18
2587 2647 5.076182 TGCACTTTAAGGATTTGGATGACA 58.924 37.500 0.00 0.00 0.00 3.58
2588 2648 5.643379 TGCACTTTAAGGATTTGGATGAC 57.357 39.130 0.00 0.00 0.00 3.06
2589 2649 6.855763 ATTGCACTTTAAGGATTTGGATGA 57.144 33.333 0.00 0.00 0.00 2.92
2596 2656 9.407380 TGACACATATATTGCACTTTAAGGATT 57.593 29.630 0.00 0.00 0.00 3.01
2597 2657 8.978874 TGACACATATATTGCACTTTAAGGAT 57.021 30.769 0.00 0.00 0.00 3.24
2598 2658 8.978874 ATGACACATATATTGCACTTTAAGGA 57.021 30.769 0.00 0.00 0.00 3.36
2599 2659 8.292448 GGATGACACATATATTGCACTTTAAGG 58.708 37.037 0.00 0.00 0.00 2.69
2600 2660 9.060347 AGGATGACACATATATTGCACTTTAAG 57.940 33.333 0.00 0.00 0.00 1.85
2601 2661 8.978874 AGGATGACACATATATTGCACTTTAA 57.021 30.769 0.00 0.00 0.00 1.52
2602 2662 8.839343 CAAGGATGACACATATATTGCACTTTA 58.161 33.333 0.00 0.00 0.00 1.85
2603 2663 7.340232 ACAAGGATGACACATATATTGCACTTT 59.660 33.333 0.00 0.00 0.00 2.66
2604 2664 6.830324 ACAAGGATGACACATATATTGCACTT 59.170 34.615 0.00 0.00 0.00 3.16
2606 2666 6.293626 GGACAAGGATGACACATATATTGCAC 60.294 42.308 0.00 0.00 0.00 4.57
2610 2670 7.805163 TCAAGGACAAGGATGACACATATATT 58.195 34.615 0.00 0.00 0.00 1.28
2611 2671 7.379059 TCAAGGACAAGGATGACACATATAT 57.621 36.000 0.00 0.00 0.00 0.86
2613 2673 5.698741 TCAAGGACAAGGATGACACATAT 57.301 39.130 0.00 0.00 0.00 1.78
2614 2674 5.013079 AGTTCAAGGACAAGGATGACACATA 59.987 40.000 0.00 0.00 0.00 2.29
2616 2676 3.136443 AGTTCAAGGACAAGGATGACACA 59.864 43.478 0.00 0.00 0.00 3.72
2617 2677 3.744660 AGTTCAAGGACAAGGATGACAC 58.255 45.455 0.00 0.00 0.00 3.67
2618 2678 5.762179 ATAGTTCAAGGACAAGGATGACA 57.238 39.130 0.00 0.00 0.00 3.58
2619 2679 6.655003 TGAAATAGTTCAAGGACAAGGATGAC 59.345 38.462 2.54 0.00 40.87 3.06
2620 2680 6.778821 TGAAATAGTTCAAGGACAAGGATGA 58.221 36.000 2.54 0.00 40.87 2.92
2633 2693 5.607477 ACGTGACTCCTTTGAAATAGTTCA 58.393 37.500 0.56 0.56 42.12 3.18
2634 2694 6.310711 CCTACGTGACTCCTTTGAAATAGTTC 59.689 42.308 0.00 0.00 0.00 3.01
2636 2696 5.245526 ACCTACGTGACTCCTTTGAAATAGT 59.754 40.000 0.00 0.00 0.00 2.12
2637 2697 5.721232 ACCTACGTGACTCCTTTGAAATAG 58.279 41.667 0.00 0.00 0.00 1.73
2638 2698 5.337009 GGACCTACGTGACTCCTTTGAAATA 60.337 44.000 0.00 0.00 0.00 1.40
2639 2699 4.562963 GGACCTACGTGACTCCTTTGAAAT 60.563 45.833 0.00 0.00 0.00 2.17
2642 2702 1.891150 GGACCTACGTGACTCCTTTGA 59.109 52.381 0.00 0.00 0.00 2.69
2643 2703 1.893801 AGGACCTACGTGACTCCTTTG 59.106 52.381 0.00 0.00 27.83 2.77
2644 2704 2.305858 AGGACCTACGTGACTCCTTT 57.694 50.000 0.00 0.00 27.83 3.11
2645 2705 2.169330 GAAGGACCTACGTGACTCCTT 58.831 52.381 17.65 17.65 44.34 3.36
2646 2706 1.075050 TGAAGGACCTACGTGACTCCT 59.925 52.381 0.00 0.62 34.38 3.69
2647 2707 1.542492 TGAAGGACCTACGTGACTCC 58.458 55.000 0.00 0.00 0.00 3.85
2648 2708 2.557490 AGTTGAAGGACCTACGTGACTC 59.443 50.000 0.00 0.00 0.00 3.36
2649 2709 2.595238 AGTTGAAGGACCTACGTGACT 58.405 47.619 0.00 0.00 0.00 3.41
2650 2710 4.715527 ATAGTTGAAGGACCTACGTGAC 57.284 45.455 0.00 0.00 0.00 3.67
2651 2711 5.244402 TGAAATAGTTGAAGGACCTACGTGA 59.756 40.000 0.00 0.00 0.00 4.35
2652 2712 5.475719 TGAAATAGTTGAAGGACCTACGTG 58.524 41.667 0.00 0.00 0.00 4.49
2653 2713 5.479375 TCTGAAATAGTTGAAGGACCTACGT 59.521 40.000 0.00 0.00 0.00 3.57
2655 2715 6.070710 ACCTCTGAAATAGTTGAAGGACCTAC 60.071 42.308 0.00 0.00 0.00 3.18
2656 2716 6.023603 ACCTCTGAAATAGTTGAAGGACCTA 58.976 40.000 0.00 0.00 0.00 3.08
2657 2717 4.846940 ACCTCTGAAATAGTTGAAGGACCT 59.153 41.667 0.00 0.00 0.00 3.85
2658 2718 4.938226 CACCTCTGAAATAGTTGAAGGACC 59.062 45.833 0.00 0.00 0.00 4.46
2661 2721 5.409826 GTGACACCTCTGAAATAGTTGAAGG 59.590 44.000 0.00 0.00 0.00 3.46
2663 2723 5.924356 TGTGACACCTCTGAAATAGTTGAA 58.076 37.500 2.45 0.00 0.00 2.69
2665 2725 9.770097 ATATATGTGACACCTCTGAAATAGTTG 57.230 33.333 2.45 0.00 0.00 3.16
2699 2759 9.010029 GTCCTCAAAAATCCTTGAAGTGTAATA 57.990 33.333 0.00 0.00 34.96 0.98
2700 2760 7.039714 GGTCCTCAAAAATCCTTGAAGTGTAAT 60.040 37.037 0.00 0.00 34.96 1.89
2702 2762 5.768164 GGTCCTCAAAAATCCTTGAAGTGTA 59.232 40.000 0.00 0.00 34.96 2.90
2703 2763 4.584743 GGTCCTCAAAAATCCTTGAAGTGT 59.415 41.667 0.00 0.00 34.96 3.55
2704 2764 4.829492 AGGTCCTCAAAAATCCTTGAAGTG 59.171 41.667 0.00 0.00 34.96 3.16
2705 2765 4.829492 CAGGTCCTCAAAAATCCTTGAAGT 59.171 41.667 0.00 0.00 34.96 3.01
2706 2766 4.829492 ACAGGTCCTCAAAAATCCTTGAAG 59.171 41.667 0.00 0.00 34.96 3.02
2708 2768 4.453480 ACAGGTCCTCAAAAATCCTTGA 57.547 40.909 0.00 0.00 34.22 3.02
2709 2769 5.393461 GCATACAGGTCCTCAAAAATCCTTG 60.393 44.000 0.00 0.00 0.00 3.61
2710 2770 4.706962 GCATACAGGTCCTCAAAAATCCTT 59.293 41.667 0.00 0.00 0.00 3.36
2711 2771 4.273318 GCATACAGGTCCTCAAAAATCCT 58.727 43.478 0.00 0.00 0.00 3.24
2712 2772 3.381590 GGCATACAGGTCCTCAAAAATCC 59.618 47.826 0.00 0.00 0.00 3.01
2714 2774 3.763897 GTGGCATACAGGTCCTCAAAAAT 59.236 43.478 0.00 0.00 0.00 1.82
2715 2775 3.153919 GTGGCATACAGGTCCTCAAAAA 58.846 45.455 0.00 0.00 0.00 1.94
2717 2777 1.985159 AGTGGCATACAGGTCCTCAAA 59.015 47.619 0.00 0.00 0.00 2.69
2718 2778 1.656587 AGTGGCATACAGGTCCTCAA 58.343 50.000 0.00 0.00 0.00 3.02
2719 2779 1.656587 AAGTGGCATACAGGTCCTCA 58.343 50.000 0.00 0.00 0.00 3.86
2722 2782 2.790433 TGAAAAGTGGCATACAGGTCC 58.210 47.619 0.00 0.00 0.00 4.46
2724 2784 5.179452 ACTATGAAAAGTGGCATACAGGT 57.821 39.130 0.00 0.00 0.00 4.00
2725 2785 6.150976 TCAAACTATGAAAAGTGGCATACAGG 59.849 38.462 0.00 0.00 34.30 4.00
2726 2786 7.144722 TCAAACTATGAAAAGTGGCATACAG 57.855 36.000 0.00 0.00 34.30 2.74
2728 2788 6.374333 TCCTCAAACTATGAAAAGTGGCATAC 59.626 38.462 0.00 0.00 37.67 2.39
2729 2789 6.374333 GTCCTCAAACTATGAAAAGTGGCATA 59.626 38.462 0.00 0.00 37.67 3.14
2731 2791 4.518970 GTCCTCAAACTATGAAAAGTGGCA 59.481 41.667 0.00 0.00 37.67 4.92
2732 2792 4.082733 GGTCCTCAAACTATGAAAAGTGGC 60.083 45.833 0.00 0.00 37.67 5.01
2734 2794 9.838339 ATATAGGTCCTCAAACTATGAAAAGTG 57.162 33.333 0.00 0.00 37.67 3.16
2735 2795 9.838339 CATATAGGTCCTCAAACTATGAAAAGT 57.162 33.333 0.00 0.00 37.67 2.66
2737 2797 9.832445 GTCATATAGGTCCTCAAACTATGAAAA 57.168 33.333 0.00 0.00 37.67 2.29
2738 2798 8.988060 TGTCATATAGGTCCTCAAACTATGAAA 58.012 33.333 0.00 0.00 37.67 2.69
2739 2799 8.421784 GTGTCATATAGGTCCTCAAACTATGAA 58.578 37.037 0.00 0.00 37.67 2.57
2740 2800 7.015292 GGTGTCATATAGGTCCTCAAACTATGA 59.985 40.741 0.00 0.00 36.38 2.15
2741 2801 7.015682 AGGTGTCATATAGGTCCTCAAACTATG 59.984 40.741 0.00 0.00 0.00 2.23
2742 2802 7.076446 AGGTGTCATATAGGTCCTCAAACTAT 58.924 38.462 0.00 0.00 0.00 2.12
2743 2803 6.441222 AGGTGTCATATAGGTCCTCAAACTA 58.559 40.000 0.00 0.00 0.00 2.24
2744 2804 5.281314 AGGTGTCATATAGGTCCTCAAACT 58.719 41.667 0.00 0.00 0.00 2.66
2745 2805 5.615925 AGGTGTCATATAGGTCCTCAAAC 57.384 43.478 0.00 0.00 0.00 2.93
2748 2808 3.889538 CGAAGGTGTCATATAGGTCCTCA 59.110 47.826 0.00 0.00 0.00 3.86
2749 2809 4.506886 CGAAGGTGTCATATAGGTCCTC 57.493 50.000 0.00 0.00 0.00 3.71
2766 2826 4.473477 AGGTCCTCAAACTATTCCGAAG 57.527 45.455 0.00 0.00 0.00 3.79
2767 2827 4.564821 CCAAGGTCCTCAAACTATTCCGAA 60.565 45.833 0.00 0.00 0.00 4.30
2768 2828 3.055385 CCAAGGTCCTCAAACTATTCCGA 60.055 47.826 0.00 0.00 0.00 4.55
2769 2829 3.055385 TCCAAGGTCCTCAAACTATTCCG 60.055 47.826 0.00 0.00 0.00 4.30
2770 2830 4.569719 TCCAAGGTCCTCAAACTATTCC 57.430 45.455 0.00 0.00 0.00 3.01
2771 2831 6.539103 GTGTATCCAAGGTCCTCAAACTATTC 59.461 42.308 0.00 0.00 0.00 1.75
2772 2832 6.215636 AGTGTATCCAAGGTCCTCAAACTATT 59.784 38.462 0.00 0.00 0.00 1.73
2773 2833 5.726793 AGTGTATCCAAGGTCCTCAAACTAT 59.273 40.000 0.00 0.00 0.00 2.12
2774 2834 5.091552 AGTGTATCCAAGGTCCTCAAACTA 58.908 41.667 0.00 0.00 0.00 2.24
2775 2835 3.910627 AGTGTATCCAAGGTCCTCAAACT 59.089 43.478 0.00 0.00 0.00 2.66
2776 2836 4.287766 AGTGTATCCAAGGTCCTCAAAC 57.712 45.455 0.00 0.00 0.00 2.93
2777 2837 4.349636 TGAAGTGTATCCAAGGTCCTCAAA 59.650 41.667 0.00 0.00 0.00 2.69
2778 2838 3.907474 TGAAGTGTATCCAAGGTCCTCAA 59.093 43.478 0.00 0.00 0.00 3.02
2779 2839 3.516586 TGAAGTGTATCCAAGGTCCTCA 58.483 45.455 0.00 0.00 0.00 3.86
2780 2840 4.508662 CTTGAAGTGTATCCAAGGTCCTC 58.491 47.826 0.00 0.00 35.05 3.71
2781 2841 4.559862 CTTGAAGTGTATCCAAGGTCCT 57.440 45.455 0.00 0.00 35.05 3.85
2786 2846 4.122776 CGGATCCTTGAAGTGTATCCAAG 58.877 47.826 10.75 0.00 36.68 3.61
2787 2847 3.517901 ACGGATCCTTGAAGTGTATCCAA 59.482 43.478 10.75 0.00 36.68 3.53
2788 2848 3.104512 ACGGATCCTTGAAGTGTATCCA 58.895 45.455 10.75 0.00 36.68 3.41
2789 2849 3.821421 ACGGATCCTTGAAGTGTATCC 57.179 47.619 10.75 7.87 34.08 2.59
2790 2850 6.496338 AAAAACGGATCCTTGAAGTGTATC 57.504 37.500 10.75 0.00 0.00 2.24
2791 2851 8.575649 AATAAAAACGGATCCTTGAAGTGTAT 57.424 30.769 10.75 0.00 0.00 2.29
2792 2852 7.989416 AATAAAAACGGATCCTTGAAGTGTA 57.011 32.000 10.75 0.00 0.00 2.90
2793 2853 6.894339 AATAAAAACGGATCCTTGAAGTGT 57.106 33.333 10.75 0.00 0.00 3.55
2794 2854 9.855021 AATAAATAAAAACGGATCCTTGAAGTG 57.145 29.630 10.75 0.00 0.00 3.16
2798 2858 8.188139 GCAGAATAAATAAAAACGGATCCTTGA 58.812 33.333 10.75 0.00 0.00 3.02
2799 2859 7.973388 TGCAGAATAAATAAAAACGGATCCTTG 59.027 33.333 10.75 0.00 0.00 3.61
2800 2860 8.062065 TGCAGAATAAATAAAAACGGATCCTT 57.938 30.769 10.75 0.00 0.00 3.36
2801 2861 7.639113 TGCAGAATAAATAAAAACGGATCCT 57.361 32.000 10.75 0.00 0.00 3.24
2802 2862 7.920682 ACATGCAGAATAAATAAAAACGGATCC 59.079 33.333 0.00 0.00 0.00 3.36
2803 2863 8.856490 ACATGCAGAATAAATAAAAACGGATC 57.144 30.769 0.00 0.00 0.00 3.36
2819 3645 6.712095 ACTTCAGTCAAATCTAACATGCAGAA 59.288 34.615 2.02 0.00 0.00 3.02
2849 3675 9.672086 CTATCAACTTGGTCAAATTTTACGAAA 57.328 29.630 2.28 0.00 0.00 3.46
2905 3732 9.559732 TGTTGAATGTACTTTCCCATCATATAG 57.440 33.333 16.44 0.00 0.00 1.31
3128 3964 7.037586 TCCAGATTCCAGGTTCAATTAAGTACT 60.038 37.037 0.00 0.00 0.00 2.73
3129 3965 7.110155 TCCAGATTCCAGGTTCAATTAAGTAC 58.890 38.462 0.00 0.00 0.00 2.73
3130 3966 7.037586 ACTCCAGATTCCAGGTTCAATTAAGTA 60.038 37.037 0.00 0.00 0.00 2.24
3131 3967 6.139679 TCCAGATTCCAGGTTCAATTAAGT 57.860 37.500 0.00 0.00 0.00 2.24
3132 3968 6.183347 ACTCCAGATTCCAGGTTCAATTAAG 58.817 40.000 0.00 0.00 0.00 1.85
3133 3969 6.139679 ACTCCAGATTCCAGGTTCAATTAA 57.860 37.500 0.00 0.00 0.00 1.40
3134 3970 5.779241 ACTCCAGATTCCAGGTTCAATTA 57.221 39.130 0.00 0.00 0.00 1.40
3135 3971 4.664688 ACTCCAGATTCCAGGTTCAATT 57.335 40.909 0.00 0.00 0.00 2.32
3136 3972 4.043310 TCAACTCCAGATTCCAGGTTCAAT 59.957 41.667 0.00 0.00 0.00 2.57
3137 3973 3.394274 TCAACTCCAGATTCCAGGTTCAA 59.606 43.478 0.00 0.00 0.00 2.69
3185 4021 1.168714 AGCTTTCCACCGAATTGCTC 58.831 50.000 0.00 0.00 34.89 4.26
3219 4055 4.482386 CGAAGAATACCAAGACTCAACGA 58.518 43.478 0.00 0.00 0.00 3.85
3241 4083 4.867599 CCTTACTCGCCGTCGCCC 62.868 72.222 0.00 0.00 35.26 6.13
3271 4113 4.507710 TGCTGGAGAAAGATGTGTATGTC 58.492 43.478 0.00 0.00 0.00 3.06
3272 4114 4.558226 TGCTGGAGAAAGATGTGTATGT 57.442 40.909 0.00 0.00 0.00 2.29
3273 4115 4.696877 TGTTGCTGGAGAAAGATGTGTATG 59.303 41.667 0.00 0.00 0.00 2.39
3302 4144 2.348998 GGTGACAGCCTGACAGGG 59.651 66.667 23.09 9.79 35.37 4.45
3306 4148 2.032681 GTGGGGTGACAGCCTGAC 59.967 66.667 22.45 15.35 35.71 3.51
3310 4152 2.361610 CATGGTGGGGTGACAGCC 60.362 66.667 15.60 15.60 38.04 4.85
3311 4153 2.361610 CCATGGTGGGGTGACAGC 60.362 66.667 2.57 0.00 39.22 4.40
3312 4154 2.361610 GCCATGGTGGGGTGACAG 60.362 66.667 14.67 0.00 38.19 3.51
3313 4155 3.978193 GGCCATGGTGGGGTGACA 61.978 66.667 14.67 0.00 38.19 3.58
3314 4156 3.661648 AGGCCATGGTGGGGTGAC 61.662 66.667 14.67 0.00 38.19 3.67
3315 4157 3.660571 CAGGCCATGGTGGGGTGA 61.661 66.667 14.67 0.00 38.19 4.02
3373 4215 1.118838 TGCTGGGAAAAACACAAGGG 58.881 50.000 0.00 0.00 0.00 3.95
3374 4216 2.364970 TGATGCTGGGAAAAACACAAGG 59.635 45.455 0.00 0.00 0.00 3.61
3376 4218 2.224018 GCTGATGCTGGGAAAAACACAA 60.224 45.455 0.00 0.00 36.03 3.33
3388 4230 0.099968 CCGAAACCATGCTGATGCTG 59.900 55.000 0.00 0.00 40.48 4.41
3389 4231 1.660560 GCCGAAACCATGCTGATGCT 61.661 55.000 0.00 0.00 40.48 3.79
3390 4232 1.226773 GCCGAAACCATGCTGATGC 60.227 57.895 0.00 0.00 40.20 3.91
3391 4233 0.099968 CTGCCGAAACCATGCTGATG 59.900 55.000 0.00 0.00 0.00 3.07
3392 4234 0.035152 TCTGCCGAAACCATGCTGAT 60.035 50.000 0.00 0.00 0.00 2.90
3393 4235 0.035152 ATCTGCCGAAACCATGCTGA 60.035 50.000 0.00 0.00 37.37 4.26
3394 4236 0.379669 GATCTGCCGAAACCATGCTG 59.620 55.000 0.00 0.00 0.00 4.41
3395 4237 0.254178 AGATCTGCCGAAACCATGCT 59.746 50.000 0.00 0.00 0.00 3.79
3396 4238 1.098050 AAGATCTGCCGAAACCATGC 58.902 50.000 0.00 0.00 0.00 4.06
3431 4273 5.570320 AGTATCAATCTAGAGAGCCTCCTC 58.430 45.833 0.00 0.00 38.42 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.