Multiple sequence alignment - TraesCS5D01G520000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G520000 chr5D 100.000 4449 0 0 1 4449 540807797 540803349 0.000000e+00 8216.0
1 TraesCS5D01G520000 chr5D 91.081 1424 75 16 599 1991 541393193 541391791 0.000000e+00 1879.0
2 TraesCS5D01G520000 chr5D 85.013 1488 129 40 799 2247 541875483 541876915 0.000000e+00 1426.0
3 TraesCS5D01G520000 chr5D 89.492 866 67 11 3423 4283 541379249 541378403 0.000000e+00 1074.0
4 TraesCS5D01G520000 chr5D 87.149 926 75 20 799 1708 541700809 541701706 0.000000e+00 1011.0
5 TraesCS5D01G520000 chr5D 98.286 525 9 0 1 525 541393830 541393306 0.000000e+00 920.0
6 TraesCS5D01G520000 chr5D 92.105 646 45 4 2870 3510 541876978 541877622 0.000000e+00 905.0
7 TraesCS5D01G520000 chr5D 90.856 689 38 4 2733 3396 541391662 541390974 0.000000e+00 900.0
8 TraesCS5D01G520000 chr5D 88.223 484 52 4 2871 3353 541702294 541702773 1.390000e-159 573.0
9 TraesCS5D01G520000 chr5D 96.203 79 3 0 2565 2643 541391790 541391712 3.610000e-26 130.0
10 TraesCS5D01G520000 chr5D 95.833 48 2 0 2701 2748 541391725 541391678 1.330000e-10 78.7
11 TraesCS5D01G520000 chr4A 82.642 1544 150 42 705 2192 627499266 627497785 0.000000e+00 1258.0
12 TraesCS5D01G520000 chr4A 91.869 578 46 1 2871 3447 627497399 627496822 0.000000e+00 806.0
13 TraesCS5D01G520000 chr4A 91.391 302 25 1 2564 2864 627497738 627497437 3.200000e-111 412.0
14 TraesCS5D01G520000 chr4A 100.000 30 0 0 481 510 669906016 669906045 6.220000e-04 56.5
15 TraesCS5D01G520000 chr4A 100.000 30 0 0 481 510 669910908 669910937 6.220000e-04 56.5
16 TraesCS5D01G520000 chr5B 84.433 1137 97 30 799 1905 683595745 683596831 0.000000e+00 1046.0
17 TraesCS5D01G520000 chr5B 88.994 845 66 11 2693 3510 683596860 683597704 0.000000e+00 1020.0
18 TraesCS5D01G520000 chr5B 92.500 40 0 2 4263 4300 635717850 635717812 2.000000e-03 54.7
19 TraesCS5D01G520000 chr2D 81.679 131 18 3 4218 4343 87445629 87445500 2.190000e-18 104.0
20 TraesCS5D01G520000 chr2D 90.164 61 6 0 4235 4295 87445659 87445599 3.690000e-11 80.5
21 TraesCS5D01G520000 chr1D 78.519 135 19 8 323 450 486174766 486174635 3.690000e-11 80.5
22 TraesCS5D01G520000 chr3B 82.022 89 10 6 323 406 738366396 738366309 2.220000e-08 71.3
23 TraesCS5D01G520000 chr3B 100.000 30 0 0 4266 4295 443359670 443359641 6.220000e-04 56.5
24 TraesCS5D01G520000 chr3B 100.000 30 0 0 481 510 738371091 738371062 6.220000e-04 56.5
25 TraesCS5D01G520000 chr3B 100.000 29 0 0 4267 4295 801162014 801162042 2.000000e-03 54.7
26 TraesCS5D01G520000 chr5A 77.099 131 18 10 323 445 702847863 702847737 1.030000e-06 65.8
27 TraesCS5D01G520000 chr5A 74.468 188 24 18 4128 4306 633041306 633041134 4.810000e-05 60.2
28 TraesCS5D01G520000 chr5A 100.000 30 0 0 481 510 702852570 702852541 6.220000e-04 56.5
29 TraesCS5D01G520000 chr5A 94.444 36 1 1 4267 4301 277840628 277840593 2.000000e-03 54.7
30 TraesCS5D01G520000 chr7B 97.059 34 1 0 3510 3543 42126768 42126801 1.730000e-04 58.4
31 TraesCS5D01G520000 chr7A 97.059 34 1 0 3510 3543 94190143 94190110 1.730000e-04 58.4
32 TraesCS5D01G520000 chr6A 100.000 30 0 0 481 510 27518588 27518617 6.220000e-04 56.5
33 TraesCS5D01G520000 chr3A 94.444 36 1 1 4267 4301 615937086 615937051 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G520000 chr5D 540803349 540807797 4448 True 8216.000000 8216 100.0000 1 4449 1 chr5D.!!$R1 4448
1 TraesCS5D01G520000 chr5D 541875483 541877622 2139 False 1165.500000 1426 88.5590 799 3510 2 chr5D.!!$F2 2711
2 TraesCS5D01G520000 chr5D 541378403 541379249 846 True 1074.000000 1074 89.4920 3423 4283 1 chr5D.!!$R2 860
3 TraesCS5D01G520000 chr5D 541700809 541702773 1964 False 792.000000 1011 87.6860 799 3353 2 chr5D.!!$F1 2554
4 TraesCS5D01G520000 chr5D 541390974 541393830 2856 True 781.540000 1879 94.4518 1 3396 5 chr5D.!!$R3 3395
5 TraesCS5D01G520000 chr4A 627496822 627499266 2444 True 825.333333 1258 88.6340 705 3447 3 chr4A.!!$R1 2742
6 TraesCS5D01G520000 chr5B 683595745 683597704 1959 False 1033.000000 1046 86.7135 799 3510 2 chr5B.!!$F1 2711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 597 0.036105 ATGGTCATCAGCGTGCTTCA 60.036 50.0 0.00 0.0 0.00 3.02 F
742 782 0.100682 GCTTCCGTCTAGCGTCATCA 59.899 55.0 5.97 0.0 39.32 3.07 F
1513 1608 0.321919 ATCAACAGCAGCCACGATGT 60.322 50.0 0.00 0.0 0.00 3.06 F
2526 2686 0.038251 GTCACTCACCATGTCGCTGA 60.038 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2203 0.240411 CTTGTTCTTGCTGCTGCTCC 59.760 55.0 17.00 1.09 40.48 4.70 R
2396 2556 0.813210 GTAGGCTGCAGCTCATGGTC 60.813 60.0 35.82 18.70 41.70 4.02 R
3253 3475 0.179161 CCGTAAGTGCTCGTCTCAGG 60.179 60.0 0.00 0.00 0.00 3.86 R
4156 4388 0.025898 CATCGCGTGAGAGTTGCATG 59.974 55.0 5.77 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
331 332 0.037232 GCGGGGAGTAGATACCATGC 60.037 60.000 0.00 0.00 30.50 4.06
436 437 2.404215 AGAGATACACAACACACGCAC 58.596 47.619 0.00 0.00 0.00 5.34
472 473 1.222936 CTGGAATTCTGGAGGCGCT 59.777 57.895 7.64 0.00 0.00 5.92
539 562 1.608025 GCTTGAAGACCGACACATGGA 60.608 52.381 0.00 0.00 0.00 3.41
540 563 2.766313 CTTGAAGACCGACACATGGAA 58.234 47.619 0.00 0.00 0.00 3.53
541 564 2.163818 TGAAGACCGACACATGGAAC 57.836 50.000 0.00 0.00 0.00 3.62
542 565 1.691976 TGAAGACCGACACATGGAACT 59.308 47.619 0.00 0.00 0.00 3.01
543 566 2.104111 TGAAGACCGACACATGGAACTT 59.896 45.455 0.00 0.00 32.73 2.66
544 567 2.169832 AGACCGACACATGGAACTTG 57.830 50.000 0.00 0.00 0.00 3.16
545 568 1.691976 AGACCGACACATGGAACTTGA 59.308 47.619 0.00 0.00 0.00 3.02
546 569 2.104111 AGACCGACACATGGAACTTGAA 59.896 45.455 0.00 0.00 0.00 2.69
547 570 2.875933 GACCGACACATGGAACTTGAAA 59.124 45.455 0.00 0.00 0.00 2.69
548 571 2.616842 ACCGACACATGGAACTTGAAAC 59.383 45.455 0.00 0.00 0.00 2.78
551 574 1.336755 ACACATGGAACTTGAAACCGC 59.663 47.619 0.00 0.00 0.00 5.68
552 575 0.958822 ACATGGAACTTGAAACCGCC 59.041 50.000 0.00 0.00 0.00 6.13
553 576 0.958091 CATGGAACTTGAAACCGCCA 59.042 50.000 0.00 0.00 0.00 5.69
554 577 0.958822 ATGGAACTTGAAACCGCCAC 59.041 50.000 0.00 0.00 0.00 5.01
555 578 0.394488 TGGAACTTGAAACCGCCACA 60.394 50.000 0.00 0.00 0.00 4.17
556 579 0.958822 GGAACTTGAAACCGCCACAT 59.041 50.000 0.00 0.00 0.00 3.21
557 580 1.335872 GGAACTTGAAACCGCCACATG 60.336 52.381 0.00 0.00 0.00 3.21
560 583 0.240945 CTTGAAACCGCCACATGGTC 59.759 55.000 0.00 0.00 39.29 4.02
561 584 0.466372 TTGAAACCGCCACATGGTCA 60.466 50.000 0.00 0.00 39.29 4.02
562 585 0.251121 TGAAACCGCCACATGGTCAT 60.251 50.000 0.00 0.00 39.29 3.06
563 586 0.451783 GAAACCGCCACATGGTCATC 59.548 55.000 0.00 0.00 39.29 2.92
566 589 2.475466 CCGCCACATGGTCATCAGC 61.475 63.158 0.00 0.00 37.57 4.26
568 591 1.746615 GCCACATGGTCATCAGCGT 60.747 57.895 0.00 0.00 37.57 5.07
569 592 1.985447 GCCACATGGTCATCAGCGTG 61.985 60.000 0.00 0.00 41.97 5.34
570 593 1.426621 CACATGGTCATCAGCGTGC 59.573 57.895 0.00 0.00 40.20 5.34
572 595 0.321919 ACATGGTCATCAGCGTGCTT 60.322 50.000 0.00 0.00 40.20 3.91
573 596 0.376152 CATGGTCATCAGCGTGCTTC 59.624 55.000 0.00 0.00 30.44 3.86
574 597 0.036105 ATGGTCATCAGCGTGCTTCA 60.036 50.000 0.00 0.00 0.00 3.02
575 598 0.036105 TGGTCATCAGCGTGCTTCAT 60.036 50.000 0.00 0.00 0.00 2.57
577 600 1.081892 GTCATCAGCGTGCTTCATGT 58.918 50.000 9.34 0.00 0.00 3.21
578 601 2.270923 GTCATCAGCGTGCTTCATGTA 58.729 47.619 9.34 0.00 0.00 2.29
580 603 1.004185 CATCAGCGTGCTTCATGTAGC 60.004 52.381 16.70 16.70 41.59 3.58
581 604 1.078201 TCAGCGTGCTTCATGTAGCG 61.078 55.000 18.06 7.25 44.18 4.26
584 607 1.756375 GCGTGCTTCATGTAGCGGAG 61.756 60.000 18.06 12.78 44.18 4.63
638 678 1.135972 CGTGTAGTGACAATGGCTTGC 60.136 52.381 0.00 0.00 37.31 4.01
742 782 0.100682 GCTTCCGTCTAGCGTCATCA 59.899 55.000 5.97 0.00 39.32 3.07
789 829 2.668457 CACAAAGATCGACTGGCTGTAC 59.332 50.000 0.00 0.00 0.00 2.90
829 869 9.955102 TGTCTAGTATGTTATAGGATACGACAT 57.045 33.333 0.00 0.00 46.39 3.06
937 996 2.125961 GGCCCGAGTCGGTCTGTAT 61.126 63.158 28.98 0.00 46.80 2.29
974 1051 8.965819 CAGCTCTATATCTTCCTTGCTCTATAA 58.034 37.037 0.00 0.00 0.00 0.98
1008 1097 1.065701 CTACCAGCTGCCTACGTACAG 59.934 57.143 8.66 8.46 36.96 2.74
1009 1098 0.898789 ACCAGCTGCCTACGTACAGT 60.899 55.000 8.66 0.00 36.26 3.55
1076 1170 2.420722 TGAACCACCGACACAAAGAAAC 59.579 45.455 0.00 0.00 0.00 2.78
1289 1383 4.547367 GCCTTGGGCCGCTACGAT 62.547 66.667 0.00 0.00 44.06 3.73
1407 1501 7.092757 ACAAGAAAATATGGGCTTCCAAATCAT 60.093 33.333 0.00 0.00 44.86 2.45
1451 1546 2.127118 AGCGTTCGTGTACGTCGG 60.127 61.111 18.83 6.84 43.22 4.79
1513 1608 0.321919 ATCAACAGCAGCCACGATGT 60.322 50.000 0.00 0.00 0.00 3.06
1588 1683 7.278868 GGAGGTGATACTTATCAAAGACAACAG 59.721 40.741 0.38 0.00 43.65 3.16
1675 1770 1.098050 GATGCCGAGATTGCCTTTGT 58.902 50.000 0.00 0.00 0.00 2.83
1699 1794 1.068588 TGCGCATGAGGTATGTAGGTC 59.931 52.381 5.66 0.00 39.08 3.85
1754 1884 4.402155 TGTGGATTCCCAGTGCATATTTTC 59.598 41.667 0.00 0.00 44.55 2.29
1761 1891 5.324409 TCCCAGTGCATATTTTCTGAGTTT 58.676 37.500 1.55 0.00 0.00 2.66
1923 2061 8.574627 CACTGCAATTAAATAAATACACACACG 58.425 33.333 0.00 0.00 0.00 4.49
1930 2068 2.748461 AAATACACACACGCACACAC 57.252 45.000 0.00 0.00 0.00 3.82
1997 2139 9.941664 CACATAAATCATTTAGTCTTTAGGCTG 57.058 33.333 0.00 0.00 0.00 4.85
2028 2170 2.107950 TATTTAGTTGTGCTGCGCCT 57.892 45.000 11.12 4.01 0.00 5.52
2029 2171 0.523072 ATTTAGTTGTGCTGCGCCTG 59.477 50.000 11.12 0.00 0.00 4.85
2030 2172 0.533978 TTTAGTTGTGCTGCGCCTGA 60.534 50.000 11.12 0.00 0.00 3.86
2031 2173 0.950555 TTAGTTGTGCTGCGCCTGAG 60.951 55.000 11.12 0.00 0.00 3.35
2032 2174 4.395583 GTTGTGCTGCGCCTGAGC 62.396 66.667 11.12 11.03 36.95 4.26
2033 2175 4.631247 TTGTGCTGCGCCTGAGCT 62.631 61.111 17.76 0.00 37.35 4.09
2041 2183 1.045350 TGCGCCTGAGCTCTTATCCT 61.045 55.000 16.19 0.00 38.13 3.24
2051 2193 5.678583 TGAGCTCTTATCCTCAAATTGGAG 58.321 41.667 16.19 2.48 36.99 3.86
2061 2203 6.147864 TCCTCAAATTGGAGTTTCACTTTG 57.852 37.500 9.05 0.00 38.10 2.77
2072 2214 0.466007 TTCACTTTGGAGCAGCAGCA 60.466 50.000 3.17 0.00 45.49 4.41
2095 2239 6.514048 GCAAGAACAAGCATGGTAGATAATCC 60.514 42.308 0.00 0.00 0.00 3.01
2207 2353 6.688073 ATTATACTTCCTCCGATCCACATT 57.312 37.500 0.00 0.00 0.00 2.71
2209 2355 7.606135 TTATACTTCCTCCGATCCACATTAA 57.394 36.000 0.00 0.00 0.00 1.40
2210 2356 4.837093 ACTTCCTCCGATCCACATTAAA 57.163 40.909 0.00 0.00 0.00 1.52
2211 2357 5.373812 ACTTCCTCCGATCCACATTAAAT 57.626 39.130 0.00 0.00 0.00 1.40
2212 2358 5.126067 ACTTCCTCCGATCCACATTAAATG 58.874 41.667 0.00 0.00 0.00 2.32
2213 2359 4.771114 TCCTCCGATCCACATTAAATGT 57.229 40.909 0.00 0.00 46.22 2.71
2214 2360 4.703897 TCCTCCGATCCACATTAAATGTC 58.296 43.478 0.00 0.00 42.70 3.06
2215 2361 4.163268 TCCTCCGATCCACATTAAATGTCA 59.837 41.667 0.00 0.00 42.70 3.58
2216 2362 4.273480 CCTCCGATCCACATTAAATGTCAC 59.727 45.833 0.00 0.00 42.70 3.67
2219 2365 5.123186 TCCGATCCACATTAAATGTCACAAC 59.877 40.000 0.00 0.00 42.70 3.32
2267 2423 8.322906 TGCGACAATTATTATAAATCAGAGGG 57.677 34.615 0.00 0.00 0.00 4.30
2268 2424 8.154203 TGCGACAATTATTATAAATCAGAGGGA 58.846 33.333 0.00 0.00 0.00 4.20
2269 2425 8.660373 GCGACAATTATTATAAATCAGAGGGAG 58.340 37.037 0.00 0.00 0.00 4.30
2270 2426 9.712305 CGACAATTATTATAAATCAGAGGGAGT 57.288 33.333 0.00 0.00 0.00 3.85
2285 2441 5.594725 CAGAGGGAGTAGTACTAGAATTGCA 59.405 44.000 1.87 0.00 0.00 4.08
2292 2448 6.755206 AGTAGTACTAGAATTGCACACACAA 58.245 36.000 1.87 0.00 0.00 3.33
2295 2451 6.959361 AGTACTAGAATTGCACACACAAAAG 58.041 36.000 0.00 0.00 32.27 2.27
2296 2452 6.765989 AGTACTAGAATTGCACACACAAAAGA 59.234 34.615 0.00 0.00 32.27 2.52
2297 2453 6.639632 ACTAGAATTGCACACACAAAAGAT 57.360 33.333 0.00 0.00 32.27 2.40
2298 2454 6.441274 ACTAGAATTGCACACACAAAAGATG 58.559 36.000 0.00 0.00 32.27 2.90
2299 2455 5.266733 AGAATTGCACACACAAAAGATGT 57.733 34.783 0.00 0.00 45.34 3.06
2300 2456 5.663456 AGAATTGCACACACAAAAGATGTT 58.337 33.333 0.00 0.00 41.46 2.71
2301 2457 6.804677 AGAATTGCACACACAAAAGATGTTA 58.195 32.000 0.00 0.00 41.46 2.41
2377 2537 4.662961 CGGCGTGGTGAGCTGACA 62.663 66.667 5.47 0.00 43.29 3.58
2378 2538 2.740055 GGCGTGGTGAGCTGACAG 60.740 66.667 5.47 0.00 34.52 3.51
2379 2539 2.740055 GCGTGGTGAGCTGACAGG 60.740 66.667 5.47 1.64 0.00 4.00
2380 2540 2.737180 CGTGGTGAGCTGACAGGT 59.263 61.111 6.92 6.92 0.00 4.00
2381 2541 1.665916 CGTGGTGAGCTGACAGGTG 60.666 63.158 12.82 0.00 0.00 4.00
2382 2542 1.963338 GTGGTGAGCTGACAGGTGC 60.963 63.158 12.82 4.65 0.00 5.01
2383 2543 2.740055 GGTGAGCTGACAGGTGCG 60.740 66.667 12.82 0.00 0.00 5.34
2384 2544 3.418068 GTGAGCTGACAGGTGCGC 61.418 66.667 12.82 0.00 0.00 6.09
2385 2545 3.927548 TGAGCTGACAGGTGCGCA 61.928 61.111 12.82 5.66 36.71 6.09
2386 2546 3.117171 GAGCTGACAGGTGCGCAG 61.117 66.667 12.22 0.60 0.00 5.18
2404 2564 2.880879 CGCCGTCACGACCATGAG 60.881 66.667 0.00 0.00 34.06 2.90
2405 2565 3.188786 GCCGTCACGACCATGAGC 61.189 66.667 0.00 0.00 0.00 4.26
2406 2566 2.573869 CCGTCACGACCATGAGCT 59.426 61.111 0.00 0.00 0.00 4.09
2407 2567 1.807165 CCGTCACGACCATGAGCTG 60.807 63.158 0.00 0.00 0.00 4.24
2408 2568 2.447887 CGTCACGACCATGAGCTGC 61.448 63.158 0.00 0.00 0.00 5.25
2409 2569 1.374631 GTCACGACCATGAGCTGCA 60.375 57.895 1.02 0.00 0.00 4.41
2410 2570 1.079612 TCACGACCATGAGCTGCAG 60.080 57.895 10.11 10.11 0.00 4.41
2411 2571 2.435586 ACGACCATGAGCTGCAGC 60.436 61.111 31.53 31.53 42.49 5.25
2412 2572 3.200593 CGACCATGAGCTGCAGCC 61.201 66.667 34.39 24.89 43.38 4.85
2413 2573 2.271497 GACCATGAGCTGCAGCCT 59.729 61.111 34.39 21.60 43.38 4.58
2414 2574 1.524002 GACCATGAGCTGCAGCCTA 59.476 57.895 34.39 23.72 43.38 3.93
2415 2575 0.813210 GACCATGAGCTGCAGCCTAC 60.813 60.000 34.39 24.69 43.38 3.18
2416 2576 1.222661 CCATGAGCTGCAGCCTACA 59.777 57.895 34.39 28.96 43.38 2.74
2417 2577 1.094073 CCATGAGCTGCAGCCTACAC 61.094 60.000 34.39 19.98 43.38 2.90
2418 2578 1.094073 CATGAGCTGCAGCCTACACC 61.094 60.000 34.39 16.66 43.38 4.16
2419 2579 2.510238 GAGCTGCAGCCTACACCG 60.510 66.667 34.39 0.00 43.38 4.94
2420 2580 2.997315 AGCTGCAGCCTACACCGA 60.997 61.111 34.39 0.00 43.38 4.69
2421 2581 2.510238 GCTGCAGCCTACACCGAG 60.510 66.667 28.76 0.00 34.31 4.63
2422 2582 2.185350 CTGCAGCCTACACCGAGG 59.815 66.667 0.00 0.00 39.88 4.63
2428 2588 4.143333 CCTACACCGAGGCCACCG 62.143 72.222 5.01 8.22 0.00 4.94
2487 2647 4.451150 CCGAGCTGCCGCCTACAA 62.451 66.667 0.00 0.00 36.60 2.41
2498 2658 3.065306 CCTACAACGAGGCCACCA 58.935 61.111 5.01 0.00 0.00 4.17
2499 2659 1.079127 CCTACAACGAGGCCACCAG 60.079 63.158 5.01 0.00 0.00 4.00
2500 2660 1.741770 CTACAACGAGGCCACCAGC 60.742 63.158 5.01 0.00 42.60 4.85
2501 2661 2.449031 CTACAACGAGGCCACCAGCA 62.449 60.000 5.01 0.00 46.50 4.41
2502 2662 2.449031 TACAACGAGGCCACCAGCAG 62.449 60.000 5.01 0.00 46.50 4.24
2503 2663 4.335647 AACGAGGCCACCAGCAGG 62.336 66.667 5.01 0.00 46.50 4.85
2510 2670 4.624364 CCACCAGCAGGCACGTCA 62.624 66.667 0.00 0.00 39.06 4.35
2511 2671 3.349006 CACCAGCAGGCACGTCAC 61.349 66.667 0.00 0.00 39.06 3.67
2512 2672 3.550431 ACCAGCAGGCACGTCACT 61.550 61.111 0.00 0.00 39.06 3.41
2513 2673 2.740055 CCAGCAGGCACGTCACTC 60.740 66.667 0.00 0.00 0.00 3.51
2514 2674 2.029518 CAGCAGGCACGTCACTCA 59.970 61.111 0.00 0.00 0.00 3.41
2515 2675 2.029666 AGCAGGCACGTCACTCAC 59.970 61.111 0.00 0.00 0.00 3.51
2516 2676 3.044305 GCAGGCACGTCACTCACC 61.044 66.667 0.00 0.00 0.00 4.02
2517 2677 2.421314 CAGGCACGTCACTCACCA 59.579 61.111 0.00 0.00 0.00 4.17
2518 2678 1.004560 CAGGCACGTCACTCACCAT 60.005 57.895 0.00 0.00 0.00 3.55
2519 2679 1.004560 AGGCACGTCACTCACCATG 60.005 57.895 0.00 0.00 0.00 3.66
2520 2680 1.301716 GGCACGTCACTCACCATGT 60.302 57.895 0.00 0.00 0.00 3.21
2521 2681 1.291877 GGCACGTCACTCACCATGTC 61.292 60.000 0.00 0.00 0.00 3.06
2522 2682 1.617755 GCACGTCACTCACCATGTCG 61.618 60.000 0.00 0.00 35.23 4.35
2523 2683 1.372997 ACGTCACTCACCATGTCGC 60.373 57.895 0.00 0.00 32.85 5.19
2524 2684 1.080501 CGTCACTCACCATGTCGCT 60.081 57.895 0.00 0.00 0.00 4.93
2525 2685 1.347097 CGTCACTCACCATGTCGCTG 61.347 60.000 0.00 0.00 0.00 5.18
2526 2686 0.038251 GTCACTCACCATGTCGCTGA 60.038 55.000 0.00 0.00 0.00 4.26
2527 2687 0.038251 TCACTCACCATGTCGCTGAC 60.038 55.000 0.00 2.32 0.00 3.51
2528 2688 1.016130 CACTCACCATGTCGCTGACC 61.016 60.000 6.30 0.00 0.00 4.02
2529 2689 1.807165 CTCACCATGTCGCTGACCG 60.807 63.158 6.30 0.00 38.61 4.79
2530 2690 2.815211 CACCATGTCGCTGACCGG 60.815 66.667 0.00 0.00 37.59 5.28
2531 2691 4.082523 ACCATGTCGCTGACCGGG 62.083 66.667 6.32 12.83 37.59 5.73
2532 2692 3.770040 CCATGTCGCTGACCGGGA 61.770 66.667 6.32 0.00 37.59 5.14
2537 2697 4.373116 TCGCTGACCGGGACTTGC 62.373 66.667 6.32 7.75 37.59 4.01
2578 2738 3.941188 CCACCTGCCACTCACCGT 61.941 66.667 0.00 0.00 0.00 4.83
2649 2809 1.750399 CAGAAATGGGGAGTGGGCG 60.750 63.158 0.00 0.00 0.00 6.13
2671 2831 1.680555 GCACATAATCCCCACGACCAA 60.681 52.381 0.00 0.00 0.00 3.67
2702 2862 2.802247 ACCGTTTGCGAGTAACCTTAAC 59.198 45.455 0.00 0.00 41.33 2.01
2718 2878 5.134202 CCTTAACAGAAAGGCGGAAATTT 57.866 39.130 0.00 0.00 39.69 1.82
2788 2979 7.170277 TGGACCCTAGGTTACTAACAAAATTC 58.830 38.462 8.29 0.00 35.25 2.17
2826 3017 1.156736 CCACGACAACATGGAACTCC 58.843 55.000 0.00 0.00 38.34 3.85
2864 3055 8.097662 AGCTTAATTGCTACAGTAGGATAATCC 58.902 37.037 9.74 0.00 42.10 3.01
2899 3121 4.817464 TGTGTTGTTCTATAACTTTGCCGT 59.183 37.500 0.00 0.00 36.51 5.68
2906 3128 5.619086 GTTCTATAACTTTGCCGTGTGCATT 60.619 40.000 0.00 0.00 40.19 3.56
2971 3193 1.667724 GAGGCAGATCACATTGGAACG 59.332 52.381 0.00 0.00 0.00 3.95
3253 3475 4.672413 GCATGCAAACTTATATCGACAAGC 59.328 41.667 14.21 0.00 0.00 4.01
3265 3487 1.290324 GACAAGCCTGAGACGAGCA 59.710 57.895 0.00 0.00 0.00 4.26
3318 3541 1.134521 AGTTGAAGAACCACGCACAGA 60.135 47.619 0.00 0.00 31.81 3.41
3353 3577 5.227152 CACGTTCCGATATGAATGGACATA 58.773 41.667 0.00 0.00 35.91 2.29
3396 3620 5.627735 CGGATGCTGCCATAACTATCCTAAT 60.628 44.000 10.12 0.00 33.58 1.73
3401 3626 9.759473 ATGCTGCCATAACTATCCTAATTTTAT 57.241 29.630 0.00 0.00 0.00 1.40
3433 3661 5.385509 AGCGGTGTTTTTATATTTGTGCT 57.614 34.783 0.00 0.00 0.00 4.40
3467 3696 0.973632 TGCACTATCGTGAACTGGGT 59.026 50.000 0.75 0.00 43.97 4.51
3510 3739 7.560991 TGTGTCTGGGCATATATTTTTCAGAAT 59.439 33.333 0.00 0.00 32.59 2.40
3512 3741 7.560991 TGTCTGGGCATATATTTTTCAGAATGT 59.439 33.333 0.00 0.00 37.40 2.71
3581 3810 1.478471 CCTCCACCACACCATCAAACA 60.478 52.381 0.00 0.00 0.00 2.83
3591 3820 8.087750 CACCACACCATCAAACACTATAATTTT 58.912 33.333 0.00 0.00 0.00 1.82
3592 3821 8.303876 ACCACACCATCAAACACTATAATTTTC 58.696 33.333 0.00 0.00 0.00 2.29
3612 3841 0.582005 GTGCAGAATTACGATCGCCC 59.418 55.000 16.60 0.00 0.00 6.13
3619 3848 4.569023 TACGATCGCCCGCTGCTG 62.569 66.667 16.60 0.00 38.05 4.41
3632 3861 1.362406 GCTGCTGCGTAGGTTCCTTC 61.362 60.000 1.76 0.00 0.00 3.46
3644 3873 0.944386 GTTCCTTCTGCTGTTTCGCA 59.056 50.000 0.00 0.00 38.40 5.10
3645 3874 0.944386 TTCCTTCTGCTGTTTCGCAC 59.056 50.000 0.00 0.00 35.74 5.34
3674 3903 2.297701 GGCCTGTTGTCACTTTTCTCA 58.702 47.619 0.00 0.00 0.00 3.27
3677 3906 3.545703 CCTGTTGTCACTTTTCTCACCT 58.454 45.455 0.00 0.00 0.00 4.00
3683 3912 4.442706 TGTCACTTTTCTCACCTTGTCTC 58.557 43.478 0.00 0.00 0.00 3.36
3689 3918 1.006102 CTCACCTTGTCTCGGCGTT 60.006 57.895 6.85 0.00 0.00 4.84
3693 3922 1.006102 CCTTGTCTCGGCGTTGTCT 60.006 57.895 6.85 0.00 0.00 3.41
3708 3937 0.752658 TGTCTATGCGGTCAGATGGG 59.247 55.000 0.00 0.00 0.00 4.00
3719 3948 1.270550 GTCAGATGGGCCTTGTTTGTG 59.729 52.381 4.53 0.00 0.00 3.33
3721 3950 0.178953 AGATGGGCCTTGTTTGTGCT 60.179 50.000 4.53 0.00 0.00 4.40
3733 3962 5.407995 CCTTGTTTGTGCTTTGTTTTTCAGA 59.592 36.000 0.00 0.00 0.00 3.27
3736 3965 3.163630 TGTGCTTTGTTTTTCAGAGGC 57.836 42.857 0.00 0.00 0.00 4.70
3737 3966 2.760092 TGTGCTTTGTTTTTCAGAGGCT 59.240 40.909 0.00 0.00 0.00 4.58
3738 3967 3.118542 GTGCTTTGTTTTTCAGAGGCTG 58.881 45.455 0.00 0.00 0.00 4.85
3739 3968 2.101249 TGCTTTGTTTTTCAGAGGCTGG 59.899 45.455 0.00 0.00 31.51 4.85
3740 3969 2.362077 GCTTTGTTTTTCAGAGGCTGGA 59.638 45.455 0.00 0.00 31.51 3.86
3774 4004 2.330231 CGGAAGCGAGCAAATTTTCA 57.670 45.000 0.00 0.00 0.00 2.69
3786 4016 6.604930 GAGCAAATTTTCATTTGTTCCCATG 58.395 36.000 11.44 0.00 46.91 3.66
3798 4030 0.252881 TTCCCATGGCCACTCTCTCT 60.253 55.000 8.16 0.00 0.00 3.10
3801 4033 0.177604 CCATGGCCACTCTCTCTCAC 59.822 60.000 8.16 0.00 0.00 3.51
3805 4037 0.530288 GGCCACTCTCTCTCACTCAC 59.470 60.000 0.00 0.00 0.00 3.51
3834 4066 7.045126 TCCTTTTTCCTCTAGATCGATCTTC 57.955 40.000 31.55 4.63 38.32 2.87
3855 4087 4.799678 TCGTCTACTTTGAGAAGAGCTTG 58.200 43.478 0.00 0.00 36.69 4.01
3891 4123 3.169908 TGCAGTGAGTATTACTGTCCCA 58.830 45.455 0.00 0.00 45.60 4.37
3894 4126 5.001232 GCAGTGAGTATTACTGTCCCAAAA 58.999 41.667 0.00 0.00 45.60 2.44
3896 4128 6.231211 CAGTGAGTATTACTGTCCCAAAACT 58.769 40.000 0.00 0.00 40.43 2.66
3914 4146 7.378181 CCAAAACTTGGTAGCATGACTATTTT 58.622 34.615 14.08 7.63 45.93 1.82
3918 4150 7.383102 ACTTGGTAGCATGACTATTTTCAAG 57.617 36.000 14.08 11.76 35.72 3.02
3919 4151 6.942576 ACTTGGTAGCATGACTATTTTCAAGT 59.057 34.615 14.08 18.19 36.73 3.16
3920 4152 7.448469 ACTTGGTAGCATGACTATTTTCAAGTT 59.552 33.333 14.08 11.20 37.39 2.66
3921 4153 7.759489 TGGTAGCATGACTATTTTCAAGTTT 57.241 32.000 0.00 0.00 32.15 2.66
3922 4154 7.816640 TGGTAGCATGACTATTTTCAAGTTTC 58.183 34.615 0.00 0.00 32.15 2.78
3923 4155 7.446931 TGGTAGCATGACTATTTTCAAGTTTCA 59.553 33.333 0.00 0.00 32.15 2.69
3924 4156 8.296713 GGTAGCATGACTATTTTCAAGTTTCAA 58.703 33.333 0.00 0.00 32.15 2.69
3935 4167 7.928908 TTTTCAAGTTTCAACACATAGATGC 57.071 32.000 0.00 0.00 0.00 3.91
3994 4226 6.914215 CCATACAGTTGCATGTTCATGTAATC 59.086 38.462 16.42 11.41 34.56 1.75
4025 4257 4.910195 ACCTAGTTGCATGTTCATTCTCA 58.090 39.130 0.00 0.00 0.00 3.27
4045 4277 4.776349 TCAATATGTAACTTGTGCCCGAT 58.224 39.130 0.00 0.00 0.00 4.18
4046 4278 4.814234 TCAATATGTAACTTGTGCCCGATC 59.186 41.667 0.00 0.00 0.00 3.69
4070 4302 1.750399 GCATGCCCACACCTTCGAT 60.750 57.895 6.36 0.00 0.00 3.59
4113 4345 4.707934 TCGATCTAGTTACATGTCCAACCA 59.292 41.667 0.00 0.00 0.00 3.67
4156 4388 1.139058 AGTTGCATATCCACCCTCGAC 59.861 52.381 0.00 0.00 0.00 4.20
4170 4402 0.987715 CTCGACATGCAACTCTCACG 59.012 55.000 0.00 0.00 0.00 4.35
4174 4406 0.390340 ACATGCAACTCTCACGCGAT 60.390 50.000 15.93 0.00 0.00 4.58
4175 4407 0.025898 CATGCAACTCTCACGCGATG 59.974 55.000 15.93 7.85 0.00 3.84
4205 4437 6.432607 CATGTCTAGACTTTCACATGCAAT 57.567 37.500 23.01 1.57 39.66 3.56
4234 4466 2.633488 GACCTAGTTGCATGTCCTTCC 58.367 52.381 0.00 0.00 0.00 3.46
4240 4472 0.684535 TTGCATGTCCTTCCTCGACA 59.315 50.000 0.00 0.00 44.00 4.35
4247 4479 0.976641 TCCTTCCTCGACATGCAACT 59.023 50.000 0.00 0.00 0.00 3.16
4255 4487 2.802247 CTCGACATGCAACTTGTCTTCA 59.198 45.455 15.08 1.22 41.05 3.02
4258 4490 3.002656 CGACATGCAACTTGTCTTCAACT 59.997 43.478 15.08 0.00 41.05 3.16
4264 4496 3.120511 GCAACTTGTCTTCAACTCCGATC 60.121 47.826 0.00 0.00 0.00 3.69
4283 4515 1.555075 TCTAGTTGCATGTCCACCCTC 59.445 52.381 0.00 0.00 0.00 4.30
4284 4516 0.249120 TAGTTGCATGTCCACCCTCG 59.751 55.000 0.00 0.00 0.00 4.63
4285 4517 1.003839 GTTGCATGTCCACCCTCGA 60.004 57.895 0.00 0.00 0.00 4.04
4286 4518 1.003839 TTGCATGTCCACCCTCGAC 60.004 57.895 0.00 0.00 0.00 4.20
4287 4519 1.763546 TTGCATGTCCACCCTCGACA 61.764 55.000 0.00 0.00 44.00 4.35
4290 4522 1.221840 ATGTCCACCCTCGACATGC 59.778 57.895 2.78 0.00 46.61 4.06
4291 4523 1.552799 ATGTCCACCCTCGACATGCA 61.553 55.000 2.78 0.00 46.61 3.96
4292 4524 1.003839 GTCCACCCTCGACATGCAA 60.004 57.895 0.00 0.00 0.00 4.08
4293 4525 1.003839 TCCACCCTCGACATGCAAC 60.004 57.895 0.00 0.00 0.00 4.17
4294 4526 1.003355 CCACCCTCGACATGCAACT 60.003 57.895 0.00 0.00 0.00 3.16
4295 4527 0.606401 CCACCCTCGACATGCAACTT 60.606 55.000 0.00 0.00 0.00 2.66
4296 4528 0.518636 CACCCTCGACATGCAACTTG 59.481 55.000 0.00 0.00 0.00 3.16
4297 4529 0.108585 ACCCTCGACATGCAACTTGT 59.891 50.000 0.00 0.00 0.00 3.16
4298 4530 0.798776 CCCTCGACATGCAACTTGTC 59.201 55.000 8.58 8.58 40.06 3.18
4299 4531 0.798776 CCTCGACATGCAACTTGTCC 59.201 55.000 12.20 0.00 40.29 4.02
4300 4532 0.798776 CTCGACATGCAACTTGTCCC 59.201 55.000 12.20 0.00 40.29 4.46
4301 4533 0.605319 TCGACATGCAACTTGTCCCC 60.605 55.000 12.20 0.00 40.29 4.81
4302 4534 0.888736 CGACATGCAACTTGTCCCCA 60.889 55.000 12.20 0.00 40.29 4.96
4303 4535 1.327303 GACATGCAACTTGTCCCCAA 58.673 50.000 7.56 0.00 38.00 4.12
4304 4536 1.000274 GACATGCAACTTGTCCCCAAC 60.000 52.381 7.56 0.00 38.00 3.77
4305 4537 0.318120 CATGCAACTTGTCCCCAACC 59.682 55.000 0.00 0.00 0.00 3.77
4306 4538 1.178534 ATGCAACTTGTCCCCAACCG 61.179 55.000 0.00 0.00 0.00 4.44
4307 4539 1.826487 GCAACTTGTCCCCAACCGT 60.826 57.895 0.00 0.00 0.00 4.83
4308 4540 2.029743 CAACTTGTCCCCAACCGTG 58.970 57.895 0.00 0.00 0.00 4.94
4309 4541 0.464735 CAACTTGTCCCCAACCGTGA 60.465 55.000 0.00 0.00 0.00 4.35
4310 4542 0.476771 AACTTGTCCCCAACCGTGAT 59.523 50.000 0.00 0.00 0.00 3.06
4311 4543 1.354101 ACTTGTCCCCAACCGTGATA 58.646 50.000 0.00 0.00 0.00 2.15
4312 4544 1.002773 ACTTGTCCCCAACCGTGATAC 59.997 52.381 0.00 0.00 0.00 2.24
4313 4545 0.037139 TTGTCCCCAACCGTGATACG 60.037 55.000 0.00 0.00 42.11 3.06
4322 4554 2.628106 CGTGATACGGCTGCATGC 59.372 61.111 11.82 11.82 38.08 4.06
4331 4563 2.203266 GCTGCATGCCTACCCTCC 60.203 66.667 16.68 0.00 35.15 4.30
4332 4564 3.047807 GCTGCATGCCTACCCTCCA 62.048 63.158 16.68 0.00 35.15 3.86
4333 4565 1.153086 CTGCATGCCTACCCTCCAC 60.153 63.158 16.68 0.00 0.00 4.02
4334 4566 1.913951 CTGCATGCCTACCCTCCACA 61.914 60.000 16.68 0.00 0.00 4.17
4335 4567 1.281199 TGCATGCCTACCCTCCACAT 61.281 55.000 16.68 0.00 0.00 3.21
4336 4568 0.820891 GCATGCCTACCCTCCACATG 60.821 60.000 6.36 0.00 40.80 3.21
4337 4569 0.820891 CATGCCTACCCTCCACATGC 60.821 60.000 0.00 0.00 32.54 4.06
4338 4570 0.990282 ATGCCTACCCTCCACATGCT 60.990 55.000 0.00 0.00 0.00 3.79
4339 4571 0.326143 TGCCTACCCTCCACATGCTA 60.326 55.000 0.00 0.00 0.00 3.49
4340 4572 0.106894 GCCTACCCTCCACATGCTAC 59.893 60.000 0.00 0.00 0.00 3.58
4341 4573 1.794714 CCTACCCTCCACATGCTACT 58.205 55.000 0.00 0.00 0.00 2.57
4342 4574 2.119495 CCTACCCTCCACATGCTACTT 58.881 52.381 0.00 0.00 0.00 2.24
4343 4575 2.158900 CCTACCCTCCACATGCTACTTG 60.159 54.545 0.00 0.00 0.00 3.16
4344 4576 1.362224 ACCCTCCACATGCTACTTGT 58.638 50.000 0.00 0.00 0.00 3.16
4345 4577 1.003580 ACCCTCCACATGCTACTTGTG 59.996 52.381 6.63 6.63 43.25 3.33
4346 4578 1.003580 CCCTCCACATGCTACTTGTGT 59.996 52.381 11.27 0.00 42.30 3.72
4347 4579 2.553028 CCCTCCACATGCTACTTGTGTT 60.553 50.000 11.27 0.00 42.30 3.32
4348 4580 2.744202 CCTCCACATGCTACTTGTGTTC 59.256 50.000 11.27 0.00 42.30 3.18
4349 4581 2.412870 TCCACATGCTACTTGTGTTCG 58.587 47.619 11.27 0.00 42.30 3.95
4350 4582 2.036604 TCCACATGCTACTTGTGTTCGA 59.963 45.455 11.27 0.00 42.30 3.71
4351 4583 3.002791 CCACATGCTACTTGTGTTCGAT 58.997 45.455 11.27 0.00 42.30 3.59
4352 4584 3.062639 CCACATGCTACTTGTGTTCGATC 59.937 47.826 11.27 0.00 42.30 3.69
4353 4585 3.062639 CACATGCTACTTGTGTTCGATCC 59.937 47.826 0.00 0.00 39.66 3.36
4354 4586 3.261580 CATGCTACTTGTGTTCGATCCA 58.738 45.455 0.00 0.00 0.00 3.41
4355 4587 3.394674 TGCTACTTGTGTTCGATCCAA 57.605 42.857 0.00 0.00 0.00 3.53
4356 4588 3.937814 TGCTACTTGTGTTCGATCCAAT 58.062 40.909 0.00 0.00 0.00 3.16
4357 4589 4.323417 TGCTACTTGTGTTCGATCCAATT 58.677 39.130 0.00 0.00 0.00 2.32
4358 4590 5.483811 TGCTACTTGTGTTCGATCCAATTA 58.516 37.500 0.00 0.00 0.00 1.40
4359 4591 5.350365 TGCTACTTGTGTTCGATCCAATTAC 59.650 40.000 0.00 0.00 0.00 1.89
4360 4592 5.350365 GCTACTTGTGTTCGATCCAATTACA 59.650 40.000 0.00 0.00 0.00 2.41
4361 4593 6.037172 GCTACTTGTGTTCGATCCAATTACAT 59.963 38.462 0.00 0.00 0.00 2.29
4362 4594 6.182039 ACTTGTGTTCGATCCAATTACATG 57.818 37.500 0.00 0.00 0.00 3.21
4363 4595 5.705441 ACTTGTGTTCGATCCAATTACATGT 59.295 36.000 2.69 2.69 0.00 3.21
4364 4596 5.794687 TGTGTTCGATCCAATTACATGTC 57.205 39.130 0.00 0.00 0.00 3.06
4365 4597 4.634004 TGTGTTCGATCCAATTACATGTCC 59.366 41.667 0.00 0.00 0.00 4.02
4366 4598 4.634004 GTGTTCGATCCAATTACATGTCCA 59.366 41.667 0.00 0.00 0.00 4.02
4367 4599 4.634004 TGTTCGATCCAATTACATGTCCAC 59.366 41.667 0.00 0.00 0.00 4.02
4368 4600 3.804036 TCGATCCAATTACATGTCCACC 58.196 45.455 0.00 0.00 0.00 4.61
4369 4601 2.878406 CGATCCAATTACATGTCCACCC 59.122 50.000 0.00 0.00 0.00 4.61
4370 4602 3.433598 CGATCCAATTACATGTCCACCCT 60.434 47.826 0.00 0.00 0.00 4.34
4371 4603 3.644966 TCCAATTACATGTCCACCCTC 57.355 47.619 0.00 0.00 0.00 4.30
4372 4604 2.093181 TCCAATTACATGTCCACCCTCG 60.093 50.000 0.00 0.00 0.00 4.63
4373 4605 1.670811 CAATTACATGTCCACCCTCGC 59.329 52.381 0.00 0.00 0.00 5.03
4374 4606 0.180406 ATTACATGTCCACCCTCGCC 59.820 55.000 0.00 0.00 0.00 5.54
4375 4607 1.195442 TTACATGTCCACCCTCGCCA 61.195 55.000 0.00 0.00 0.00 5.69
4376 4608 1.613317 TACATGTCCACCCTCGCCAG 61.613 60.000 0.00 0.00 0.00 4.85
4377 4609 2.284625 ATGTCCACCCTCGCCAGA 60.285 61.111 0.00 0.00 0.00 3.86
4378 4610 1.690633 ATGTCCACCCTCGCCAGAT 60.691 57.895 0.00 0.00 0.00 2.90
4379 4611 1.976132 ATGTCCACCCTCGCCAGATG 61.976 60.000 0.00 0.00 0.00 2.90
4380 4612 2.038813 TCCACCCTCGCCAGATGA 59.961 61.111 0.00 0.00 0.00 2.92
4381 4613 1.612146 TCCACCCTCGCCAGATGAA 60.612 57.895 0.00 0.00 0.00 2.57
4382 4614 0.982852 TCCACCCTCGCCAGATGAAT 60.983 55.000 0.00 0.00 0.00 2.57
4383 4615 0.533755 CCACCCTCGCCAGATGAATC 60.534 60.000 0.00 0.00 0.00 2.52
4384 4616 0.178767 CACCCTCGCCAGATGAATCA 59.821 55.000 0.00 0.00 0.00 2.57
4385 4617 1.135094 ACCCTCGCCAGATGAATCAT 58.865 50.000 0.00 0.00 0.00 2.45
4386 4618 1.492176 ACCCTCGCCAGATGAATCATT 59.508 47.619 0.00 0.00 0.00 2.57
4387 4619 2.705658 ACCCTCGCCAGATGAATCATTA 59.294 45.455 0.00 0.00 0.00 1.90
4388 4620 3.244353 ACCCTCGCCAGATGAATCATTAG 60.244 47.826 0.00 0.00 0.00 1.73
4389 4621 3.007290 CCCTCGCCAGATGAATCATTAGA 59.993 47.826 0.00 0.00 0.00 2.10
4390 4622 4.244066 CCTCGCCAGATGAATCATTAGAG 58.756 47.826 0.00 2.94 0.00 2.43
4391 4623 3.657634 TCGCCAGATGAATCATTAGAGC 58.342 45.455 0.00 0.00 0.00 4.09
4392 4624 2.740981 CGCCAGATGAATCATTAGAGCC 59.259 50.000 0.00 0.00 0.00 4.70
4393 4625 3.080319 GCCAGATGAATCATTAGAGCCC 58.920 50.000 0.00 0.00 0.00 5.19
4394 4626 3.683802 CCAGATGAATCATTAGAGCCCC 58.316 50.000 0.00 0.00 0.00 5.80
4395 4627 3.332919 CAGATGAATCATTAGAGCCCCG 58.667 50.000 0.00 0.00 0.00 5.73
4396 4628 2.975489 AGATGAATCATTAGAGCCCCGT 59.025 45.455 0.00 0.00 0.00 5.28
4397 4629 2.620251 TGAATCATTAGAGCCCCGTG 57.380 50.000 0.00 0.00 0.00 4.94
4398 4630 1.837439 TGAATCATTAGAGCCCCGTGT 59.163 47.619 0.00 0.00 0.00 4.49
4399 4631 2.213499 GAATCATTAGAGCCCCGTGTG 58.787 52.381 0.00 0.00 0.00 3.82
4400 4632 1.496060 ATCATTAGAGCCCCGTGTGA 58.504 50.000 0.00 0.00 0.00 3.58
4401 4633 0.535335 TCATTAGAGCCCCGTGTGAC 59.465 55.000 0.00 0.00 0.00 3.67
4402 4634 0.249120 CATTAGAGCCCCGTGTGACA 59.751 55.000 0.00 0.00 0.00 3.58
4403 4635 1.134401 CATTAGAGCCCCGTGTGACAT 60.134 52.381 0.00 0.00 0.00 3.06
4404 4636 0.249120 TTAGAGCCCCGTGTGACATG 59.751 55.000 0.00 0.00 0.00 3.21
4405 4637 2.238847 TAGAGCCCCGTGTGACATGC 62.239 60.000 0.00 0.00 0.00 4.06
4406 4638 3.899981 GAGCCCCGTGTGACATGCA 62.900 63.158 0.00 0.00 0.00 3.96
4407 4639 2.983030 GCCCCGTGTGACATGCAA 60.983 61.111 0.00 0.00 0.00 4.08
4408 4640 2.953821 CCCCGTGTGACATGCAAC 59.046 61.111 0.00 0.00 0.00 4.17
4409 4641 1.600636 CCCCGTGTGACATGCAACT 60.601 57.895 0.00 0.00 0.00 3.16
4410 4642 0.321210 CCCCGTGTGACATGCAACTA 60.321 55.000 0.00 0.00 0.00 2.24
4411 4643 1.678728 CCCCGTGTGACATGCAACTAT 60.679 52.381 0.00 0.00 0.00 2.12
4412 4644 1.398041 CCCGTGTGACATGCAACTATG 59.602 52.381 0.00 0.00 0.00 2.23
4413 4645 1.398041 CCGTGTGACATGCAACTATGG 59.602 52.381 0.00 0.00 32.32 2.74
4414 4646 1.202065 CGTGTGACATGCAACTATGGC 60.202 52.381 0.00 0.00 36.59 4.40
4415 4647 1.133025 GTGTGACATGCAACTATGGCC 59.867 52.381 0.00 0.00 35.11 5.36
4416 4648 1.004628 TGTGACATGCAACTATGGCCT 59.995 47.619 3.32 0.00 35.11 5.19
4417 4649 1.672881 GTGACATGCAACTATGGCCTC 59.327 52.381 3.32 0.00 35.11 4.70
4418 4650 0.940126 GACATGCAACTATGGCCTCG 59.060 55.000 3.32 0.00 29.48 4.63
4419 4651 1.097547 ACATGCAACTATGGCCTCGC 61.098 55.000 3.32 0.00 32.32 5.03
4448 4680 7.414814 TTTTGTTTGTCTTTGTTGAAAGTCC 57.585 32.000 0.00 0.00 39.79 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 1.551908 CCTGCAACCTCTCCTCTGCT 61.552 60.000 0.00 0.00 35.78 4.24
331 332 6.145338 TCGCAACCCTAGTTCTATTTCTAG 57.855 41.667 0.00 0.00 32.45 2.43
436 437 3.817084 TCCAGATGCTTGTTTCTGTTGAG 59.183 43.478 0.00 0.00 38.12 3.02
497 498 4.101448 CCTCCTCCACCGCCCTTG 62.101 72.222 0.00 0.00 0.00 3.61
539 562 0.673437 CCATGTGGCGGTTTCAAGTT 59.327 50.000 0.00 0.00 0.00 2.66
540 563 0.467290 ACCATGTGGCGGTTTCAAGT 60.467 50.000 0.00 0.00 39.32 3.16
541 564 0.240945 GACCATGTGGCGGTTTCAAG 59.759 55.000 0.00 0.00 36.69 3.02
542 565 0.466372 TGACCATGTGGCGGTTTCAA 60.466 50.000 0.00 0.00 36.69 2.69
543 566 0.251121 ATGACCATGTGGCGGTTTCA 60.251 50.000 0.00 0.00 36.69 2.69
544 567 0.451783 GATGACCATGTGGCGGTTTC 59.548 55.000 0.00 0.00 36.69 2.78
545 568 0.251121 TGATGACCATGTGGCGGTTT 60.251 50.000 0.00 0.00 36.69 3.27
546 569 0.677731 CTGATGACCATGTGGCGGTT 60.678 55.000 0.00 0.00 36.69 4.44
547 570 1.078214 CTGATGACCATGTGGCGGT 60.078 57.895 0.00 0.00 40.30 5.68
548 571 2.475466 GCTGATGACCATGTGGCGG 61.475 63.158 0.00 0.00 39.32 6.13
551 574 1.985447 GCACGCTGATGACCATGTGG 61.985 60.000 0.00 0.00 42.17 4.17
552 575 1.022982 AGCACGCTGATGACCATGTG 61.023 55.000 0.00 0.00 35.42 3.21
553 576 0.321919 AAGCACGCTGATGACCATGT 60.322 50.000 0.00 0.00 0.00 3.21
554 577 0.376152 GAAGCACGCTGATGACCATG 59.624 55.000 0.00 0.00 0.00 3.66
555 578 0.036105 TGAAGCACGCTGATGACCAT 60.036 50.000 0.00 0.00 0.00 3.55
556 579 0.036105 ATGAAGCACGCTGATGACCA 60.036 50.000 0.00 0.00 0.00 4.02
557 580 0.376152 CATGAAGCACGCTGATGACC 59.624 55.000 5.70 0.00 0.00 4.02
560 583 1.004185 GCTACATGAAGCACGCTGATG 60.004 52.381 0.00 8.91 42.30 3.07
561 584 1.293924 GCTACATGAAGCACGCTGAT 58.706 50.000 0.00 0.00 42.30 2.90
562 585 1.078201 CGCTACATGAAGCACGCTGA 61.078 55.000 0.00 0.00 42.91 4.26
563 586 1.346197 CGCTACATGAAGCACGCTG 59.654 57.895 0.00 0.00 42.91 5.18
566 589 1.756375 GCTCCGCTACATGAAGCACG 61.756 60.000 0.00 0.00 42.91 5.34
568 591 0.179100 GAGCTCCGCTACATGAAGCA 60.179 55.000 0.87 0.00 42.91 3.91
569 592 0.878086 GGAGCTCCGCTACATGAAGC 60.878 60.000 19.06 0.00 39.71 3.86
570 593 0.749649 AGGAGCTCCGCTACATGAAG 59.250 55.000 26.95 0.00 42.99 3.02
572 595 0.106469 AGAGGAGCTCCGCTACATGA 60.106 55.000 34.62 0.00 42.99 3.07
573 596 0.313672 GAGAGGAGCTCCGCTACATG 59.686 60.000 35.37 0.00 46.39 3.21
574 597 0.184933 AGAGAGGAGCTCCGCTACAT 59.815 55.000 35.37 22.42 46.39 2.29
575 598 0.464735 GAGAGAGGAGCTCCGCTACA 60.465 60.000 35.37 0.00 46.39 2.74
577 600 0.548989 AAGAGAGAGGAGCTCCGCTA 59.451 55.000 35.37 0.00 46.39 4.26
580 603 1.405105 CAGAAAGAGAGAGGAGCTCCG 59.595 57.143 26.95 4.26 45.10 4.63
581 604 1.136891 GCAGAAAGAGAGAGGAGCTCC 59.863 57.143 26.22 26.22 45.10 4.70
584 607 0.177836 GGGCAGAAAGAGAGAGGAGC 59.822 60.000 0.00 0.00 0.00 4.70
585 608 0.829990 GGGGCAGAAAGAGAGAGGAG 59.170 60.000 0.00 0.00 0.00 3.69
586 609 0.972983 CGGGGCAGAAAGAGAGAGGA 60.973 60.000 0.00 0.00 0.00 3.71
587 610 1.519719 CGGGGCAGAAAGAGAGAGG 59.480 63.158 0.00 0.00 0.00 3.69
588 611 1.519719 CCGGGGCAGAAAGAGAGAG 59.480 63.158 0.00 0.00 0.00 3.20
589 612 2.660064 GCCGGGGCAGAAAGAGAGA 61.660 63.158 2.18 0.00 41.49 3.10
590 613 2.124942 GCCGGGGCAGAAAGAGAG 60.125 66.667 2.18 0.00 41.49 3.20
592 615 4.082523 TCGCCGGGGCAGAAAGAG 62.083 66.667 14.85 0.00 42.06 2.85
593 616 4.082523 CTCGCCGGGGCAGAAAGA 62.083 66.667 14.85 0.00 42.06 2.52
595 618 4.388499 GTCTCGCCGGGGCAGAAA 62.388 66.667 14.85 0.00 42.06 2.52
638 678 1.901650 GAAGCACGCTGGAGAAACCG 61.902 60.000 0.00 0.00 42.61 4.44
829 869 8.088365 ACATACTAGACCGTGTACGTATATACA 58.912 37.037 13.22 0.00 37.74 2.29
974 1051 5.067805 GCAGCTGGTAGGCTTATGTTTTATT 59.932 40.000 17.12 0.00 41.00 1.40
1076 1170 5.649782 ATAGGCAGTTCATGGTTTCTTTG 57.350 39.130 0.00 0.00 0.00 2.77
1407 1501 3.060020 GAAGCGGGTCGACGATCCA 62.060 63.158 26.09 0.00 31.02 3.41
1451 1546 2.032808 GCCAATAACTTTCTCGGCGATC 60.033 50.000 11.27 0.00 0.00 3.69
1513 1608 2.436109 GCTTGGGGCTCTTGGTGA 59.564 61.111 0.00 0.00 38.06 4.02
1644 1739 6.324819 CAATCTCGGCATCTGTAAAATGTTT 58.675 36.000 0.00 0.00 0.00 2.83
1675 1770 4.202315 ACCTACATACCTCATGCGCAATAA 60.202 41.667 17.11 1.12 38.29 1.40
1754 1884 8.677300 ACATTATGCACCTACATAAAAACTCAG 58.323 33.333 0.00 0.00 43.68 3.35
1761 1891 7.715249 GGAGAGAACATTATGCACCTACATAAA 59.285 37.037 0.00 0.00 43.68 1.40
1997 2139 5.681543 GCACAACTAAATAATTAAGAGGCGC 59.318 40.000 0.00 0.00 0.00 6.53
2028 2170 5.190528 ACTCCAATTTGAGGATAAGAGCTCA 59.809 40.000 17.77 0.00 36.66 4.26
2029 2171 5.679601 ACTCCAATTTGAGGATAAGAGCTC 58.320 41.667 5.27 5.27 36.66 4.09
2030 2172 5.707066 ACTCCAATTTGAGGATAAGAGCT 57.293 39.130 10.99 0.00 36.66 4.09
2031 2173 6.375455 TGAAACTCCAATTTGAGGATAAGAGC 59.625 38.462 10.99 0.00 36.66 4.09
2032 2174 7.756558 GTGAAACTCCAATTTGAGGATAAGAG 58.243 38.462 10.99 0.00 36.66 2.85
2033 2175 7.687941 GTGAAACTCCAATTTGAGGATAAGA 57.312 36.000 10.99 0.00 36.66 2.10
2051 2193 1.601412 GCTGCTGCTCCAAAGTGAAAC 60.601 52.381 8.53 0.00 36.03 2.78
2061 2203 0.240411 CTTGTTCTTGCTGCTGCTCC 59.760 55.000 17.00 1.09 40.48 4.70
2072 2214 6.662755 TGGATTATCTACCATGCTTGTTCTT 58.337 36.000 0.00 0.00 0.00 2.52
2197 2343 6.182039 AGTTGTGACATTTAATGTGGATCG 57.818 37.500 15.83 0.00 45.03 3.69
2241 2397 8.783093 CCCTCTGATTTATAATAATTGTCGCAA 58.217 33.333 0.00 0.00 0.00 4.85
2257 2413 8.919145 CAATTCTAGTACTACTCCCTCTGATTT 58.081 37.037 0.00 0.00 0.00 2.17
2258 2414 7.014808 GCAATTCTAGTACTACTCCCTCTGATT 59.985 40.741 0.00 0.00 0.00 2.57
2259 2415 6.492087 GCAATTCTAGTACTACTCCCTCTGAT 59.508 42.308 0.00 0.00 0.00 2.90
2260 2416 5.828859 GCAATTCTAGTACTACTCCCTCTGA 59.171 44.000 0.00 0.00 0.00 3.27
2261 2417 5.594725 TGCAATTCTAGTACTACTCCCTCTG 59.405 44.000 0.00 0.00 0.00 3.35
2262 2418 5.595133 GTGCAATTCTAGTACTACTCCCTCT 59.405 44.000 0.00 0.00 0.00 3.69
2263 2419 5.360144 TGTGCAATTCTAGTACTACTCCCTC 59.640 44.000 0.00 0.00 0.00 4.30
2264 2420 5.127356 GTGTGCAATTCTAGTACTACTCCCT 59.873 44.000 0.00 0.00 0.00 4.20
2265 2421 5.105473 TGTGTGCAATTCTAGTACTACTCCC 60.105 44.000 0.00 0.00 0.00 4.30
2266 2422 5.805994 GTGTGTGCAATTCTAGTACTACTCC 59.194 44.000 0.00 0.00 0.00 3.85
2267 2423 6.387465 TGTGTGTGCAATTCTAGTACTACTC 58.613 40.000 0.00 0.00 0.00 2.59
2268 2424 6.340962 TGTGTGTGCAATTCTAGTACTACT 57.659 37.500 0.00 0.00 0.00 2.57
2269 2425 7.416154 TTTGTGTGTGCAATTCTAGTACTAC 57.584 36.000 0.00 0.00 0.00 2.73
2270 2426 7.929245 TCTTTTGTGTGTGCAATTCTAGTACTA 59.071 33.333 1.89 1.89 0.00 1.82
2271 2427 6.765989 TCTTTTGTGTGTGCAATTCTAGTACT 59.234 34.615 0.00 0.00 0.00 2.73
2272 2428 6.954944 TCTTTTGTGTGTGCAATTCTAGTAC 58.045 36.000 0.00 0.00 0.00 2.73
2273 2429 7.228507 ACATCTTTTGTGTGTGCAATTCTAGTA 59.771 33.333 0.00 0.00 37.11 1.82
2274 2430 6.039717 ACATCTTTTGTGTGTGCAATTCTAGT 59.960 34.615 0.00 0.00 37.11 2.57
2275 2431 6.441274 ACATCTTTTGTGTGTGCAATTCTAG 58.559 36.000 0.00 0.00 37.11 2.43
2276 2432 6.389830 ACATCTTTTGTGTGTGCAATTCTA 57.610 33.333 0.00 0.00 37.11 2.10
2285 2441 6.018832 GCAATTTGCTAACATCTTTTGTGTGT 60.019 34.615 14.11 0.00 40.96 3.72
2311 2471 1.987855 CCAGGTCCCTTGCGAGGTA 60.988 63.158 19.14 0.00 41.85 3.08
2319 2479 4.938756 TGGGTGCCCAGGTCCCTT 62.939 66.667 5.73 0.00 41.89 3.95
2360 2520 4.662961 TGTCAGCTCACCACGCCG 62.663 66.667 0.00 0.00 0.00 6.46
2361 2521 2.740055 CTGTCAGCTCACCACGCC 60.740 66.667 0.00 0.00 0.00 5.68
2362 2522 2.740055 CCTGTCAGCTCACCACGC 60.740 66.667 0.00 0.00 0.00 5.34
2363 2523 1.665916 CACCTGTCAGCTCACCACG 60.666 63.158 0.00 0.00 0.00 4.94
2364 2524 1.963338 GCACCTGTCAGCTCACCAC 60.963 63.158 0.00 0.00 0.00 4.16
2365 2525 2.427320 GCACCTGTCAGCTCACCA 59.573 61.111 0.00 0.00 0.00 4.17
2366 2526 2.740055 CGCACCTGTCAGCTCACC 60.740 66.667 0.00 0.00 0.00 4.02
2367 2527 3.418068 GCGCACCTGTCAGCTCAC 61.418 66.667 0.30 0.00 0.00 3.51
2368 2528 3.871248 CTGCGCACCTGTCAGCTCA 62.871 63.158 5.66 0.00 0.00 4.26
2369 2529 3.117171 CTGCGCACCTGTCAGCTC 61.117 66.667 5.66 0.00 0.00 4.09
2387 2547 2.880879 CTCATGGTCGTGACGGCG 60.881 66.667 4.80 4.80 29.52 6.46
2388 2548 3.188786 GCTCATGGTCGTGACGGC 61.189 66.667 4.70 1.80 0.00 5.68
2389 2549 1.807165 CAGCTCATGGTCGTGACGG 60.807 63.158 4.70 0.00 0.00 4.79
2390 2550 2.447887 GCAGCTCATGGTCGTGACG 61.448 63.158 0.00 0.00 0.00 4.35
2391 2551 1.357258 CTGCAGCTCATGGTCGTGAC 61.357 60.000 0.00 0.00 0.00 3.67
2392 2552 1.079612 CTGCAGCTCATGGTCGTGA 60.080 57.895 0.00 0.00 0.00 4.35
2393 2553 2.747822 GCTGCAGCTCATGGTCGTG 61.748 63.158 31.33 0.00 38.21 4.35
2394 2554 2.435586 GCTGCAGCTCATGGTCGT 60.436 61.111 31.33 0.00 38.21 4.34
2395 2555 2.302199 TAGGCTGCAGCTCATGGTCG 62.302 60.000 35.82 0.00 41.70 4.79
2396 2556 0.813210 GTAGGCTGCAGCTCATGGTC 60.813 60.000 35.82 18.70 41.70 4.02
2397 2557 1.222936 GTAGGCTGCAGCTCATGGT 59.777 57.895 35.82 16.84 41.70 3.55
2398 2558 1.094073 GTGTAGGCTGCAGCTCATGG 61.094 60.000 35.82 0.00 41.70 3.66
2399 2559 1.094073 GGTGTAGGCTGCAGCTCATG 61.094 60.000 35.82 0.55 41.70 3.07
2400 2560 1.222936 GGTGTAGGCTGCAGCTCAT 59.777 57.895 35.82 24.12 41.70 2.90
2401 2561 2.665000 GGTGTAGGCTGCAGCTCA 59.335 61.111 35.82 27.26 41.70 4.26
2402 2562 2.510238 CGGTGTAGGCTGCAGCTC 60.510 66.667 35.82 25.61 41.70 4.09
2403 2563 2.997315 TCGGTGTAGGCTGCAGCT 60.997 61.111 35.82 23.99 41.70 4.24
2404 2564 2.510238 CTCGGTGTAGGCTGCAGC 60.510 66.667 30.88 30.88 41.14 5.25
2405 2565 2.185350 CCTCGGTGTAGGCTGCAG 59.815 66.667 10.11 10.11 0.00 4.41
2411 2571 4.143333 CGGTGGCCTCGGTGTAGG 62.143 72.222 3.32 0.00 39.87 3.18
2412 2572 4.143333 CCGGTGGCCTCGGTGTAG 62.143 72.222 23.79 4.47 42.33 2.74
2497 2657 2.029518 TGAGTGACGTGCCTGCTG 59.970 61.111 0.00 0.00 0.00 4.41
2498 2658 2.029666 GTGAGTGACGTGCCTGCT 59.970 61.111 0.00 0.00 0.00 4.24
2499 2659 3.044305 GGTGAGTGACGTGCCTGC 61.044 66.667 0.00 0.00 0.00 4.85
2500 2660 1.004560 ATGGTGAGTGACGTGCCTG 60.005 57.895 0.00 0.00 0.00 4.85
2501 2661 1.004560 CATGGTGAGTGACGTGCCT 60.005 57.895 0.00 0.00 0.00 4.75
2502 2662 1.291877 GACATGGTGAGTGACGTGCC 61.292 60.000 0.00 0.00 0.00 5.01
2503 2663 1.617755 CGACATGGTGAGTGACGTGC 61.618 60.000 0.00 0.00 31.86 5.34
2504 2664 1.617755 GCGACATGGTGAGTGACGTG 61.618 60.000 0.00 0.00 37.15 4.49
2505 2665 1.372997 GCGACATGGTGAGTGACGT 60.373 57.895 0.00 0.00 37.15 4.34
2506 2666 1.080501 AGCGACATGGTGAGTGACG 60.081 57.895 0.00 0.00 37.69 4.35
2507 2667 4.996976 AGCGACATGGTGAGTGAC 57.003 55.556 0.00 0.00 0.00 3.67
2514 2674 4.082523 CCCGGTCAGCGACATGGT 62.083 66.667 0.00 0.00 33.68 3.55
2515 2675 3.770040 TCCCGGTCAGCGACATGG 61.770 66.667 0.00 10.18 33.68 3.66
2516 2676 2.507110 AAGTCCCGGTCAGCGACATG 62.507 60.000 0.00 0.00 33.68 3.21
2517 2677 2.283529 AAGTCCCGGTCAGCGACAT 61.284 57.895 0.00 0.00 33.68 3.06
2518 2678 2.915659 AAGTCCCGGTCAGCGACA 60.916 61.111 0.00 0.00 33.68 4.35
2519 2679 2.432628 CAAGTCCCGGTCAGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
2520 2680 4.373116 GCAAGTCCCGGTCAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
2556 2716 4.767255 GAGTGGCAGGTGGGCTCG 62.767 72.222 0.00 0.00 43.83 5.03
2557 2717 3.640407 TGAGTGGCAGGTGGGCTC 61.640 66.667 0.00 0.00 43.83 4.70
2558 2718 3.958860 GTGAGTGGCAGGTGGGCT 61.959 66.667 0.00 0.00 43.83 5.19
2560 2720 4.704833 CGGTGAGTGGCAGGTGGG 62.705 72.222 0.00 0.00 0.00 4.61
2561 2721 3.941188 ACGGTGAGTGGCAGGTGG 61.941 66.667 0.00 0.00 0.00 4.61
2562 2722 2.666190 CACGGTGAGTGGCAGGTG 60.666 66.667 0.74 0.00 46.77 4.00
2578 2738 4.506288 CGAATTTCCACAGCATATCGTACA 59.494 41.667 0.00 0.00 0.00 2.90
2649 2809 1.583054 GTCGTGGGGATTATGTGCTC 58.417 55.000 0.00 0.00 0.00 4.26
2655 2815 2.574369 TCTTGTTGGTCGTGGGGATTAT 59.426 45.455 0.00 0.00 0.00 1.28
2671 2831 2.993899 CTCGCAAACGGTTATCTCTTGT 59.006 45.455 0.00 0.00 40.63 3.16
2702 2862 3.492313 CGAAGAAATTTCCGCCTTTCTG 58.508 45.455 14.61 5.05 40.02 3.02
2718 2878 7.041635 TGTATAATTTCATCCGTACCGAAGA 57.958 36.000 0.00 0.00 0.00 2.87
2826 3017 3.428589 GCAATTAAGCTTGGCTGAAGAGG 60.429 47.826 9.86 0.00 39.62 3.69
2899 3121 5.358922 TCGATCATCAGAACATAATGCACA 58.641 37.500 0.00 0.00 0.00 4.57
2906 3128 4.751600 GGCAACATCGATCATCAGAACATA 59.248 41.667 0.00 0.00 0.00 2.29
2971 3193 1.367659 CAGCAGCTCCAAGTAGAAGC 58.632 55.000 0.00 0.00 0.00 3.86
3253 3475 0.179161 CCGTAAGTGCTCGTCTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
3284 3506 6.377146 GGTTCTTCAACTTGGGCATTCTAATA 59.623 38.462 0.00 0.00 32.50 0.98
3318 3541 1.512926 GGAACGTGCTGAAGATGTGT 58.487 50.000 0.00 0.00 0.00 3.72
3353 3577 1.680338 GTCAAACAGACTTGCCCTGT 58.320 50.000 0.00 0.00 45.88 4.00
3433 3661 5.334028 CGATAGTGCACAAGAACAACATTCA 60.334 40.000 21.04 0.00 0.00 2.57
3467 3696 9.283768 CCCAGACACAAAATACATGCTATATAA 57.716 33.333 0.00 0.00 0.00 0.98
3510 3739 8.659527 TCATCTAGATGGGAATTAGCAAATACA 58.340 33.333 28.30 4.12 39.24 2.29
3543 3772 4.649674 TGGAGGACCTAGATGTGACATAAC 59.350 45.833 0.00 0.00 37.04 1.89
3549 3778 1.361197 TGGTGGAGGACCTAGATGTGA 59.639 52.381 0.00 0.00 46.32 3.58
3573 3802 7.962373 TCTGCACGAAAATTATAGTGTTTGATG 59.038 33.333 0.00 0.00 36.99 3.07
3581 3810 8.415192 TCGTAATTCTGCACGAAAATTATAGT 57.585 30.769 0.00 0.00 43.63 2.12
3592 3821 0.229753 GGCGATCGTAATTCTGCACG 59.770 55.000 17.81 0.00 39.48 5.34
3619 3848 0.037232 ACAGCAGAAGGAACCTACGC 60.037 55.000 0.00 0.00 0.00 4.42
3620 3849 2.457366 AACAGCAGAAGGAACCTACG 57.543 50.000 0.00 0.00 0.00 3.51
3623 3852 1.884235 CGAAACAGCAGAAGGAACCT 58.116 50.000 0.00 0.00 0.00 3.50
3674 3903 1.300697 GACAACGCCGAGACAAGGT 60.301 57.895 0.00 0.00 0.00 3.50
3677 3906 1.990799 CATAGACAACGCCGAGACAA 58.009 50.000 0.00 0.00 0.00 3.18
3683 3912 2.508439 ACCGCATAGACAACGCCG 60.508 61.111 0.00 0.00 0.00 6.46
3689 3918 0.752658 CCCATCTGACCGCATAGACA 59.247 55.000 0.00 0.00 0.00 3.41
3693 3922 1.344953 AAGGCCCATCTGACCGCATA 61.345 55.000 0.00 0.00 0.00 3.14
3708 3937 4.083590 TGAAAAACAAAGCACAAACAAGGC 60.084 37.500 0.00 0.00 0.00 4.35
3719 3948 2.362077 TCCAGCCTCTGAAAAACAAAGC 59.638 45.455 0.00 0.00 32.44 3.51
3721 3950 3.885297 CTCTCCAGCCTCTGAAAAACAAA 59.115 43.478 0.00 0.00 32.44 2.83
3733 3962 2.504996 CTCTTCCAATTCTCTCCAGCCT 59.495 50.000 0.00 0.00 0.00 4.58
3736 3965 2.548875 CGCTCTTCCAATTCTCTCCAG 58.451 52.381 0.00 0.00 0.00 3.86
3737 3966 1.208052 CCGCTCTTCCAATTCTCTCCA 59.792 52.381 0.00 0.00 0.00 3.86
3738 3967 1.482593 TCCGCTCTTCCAATTCTCTCC 59.517 52.381 0.00 0.00 0.00 3.71
3739 3968 2.969628 TCCGCTCTTCCAATTCTCTC 57.030 50.000 0.00 0.00 0.00 3.20
3740 3969 2.679349 GCTTCCGCTCTTCCAATTCTCT 60.679 50.000 0.00 0.00 0.00 3.10
3786 4016 0.530288 GTGAGTGAGAGAGAGTGGCC 59.470 60.000 0.00 0.00 0.00 5.36
3798 4030 6.129179 AGAGGAAAAAGGAAAATGTGAGTGA 58.871 36.000 0.00 0.00 0.00 3.41
3801 4033 7.986085 TCTAGAGGAAAAAGGAAAATGTGAG 57.014 36.000 0.00 0.00 0.00 3.51
3805 4037 7.849804 TCGATCTAGAGGAAAAAGGAAAATG 57.150 36.000 0.00 0.00 0.00 2.32
3834 4066 4.384247 CACAAGCTCTTCTCAAAGTAGACG 59.616 45.833 0.00 0.00 33.95 4.18
3891 4123 8.177119 TGAAAATAGTCATGCTACCAAGTTTT 57.823 30.769 0.00 0.00 31.59 2.43
3894 4126 6.942576 ACTTGAAAATAGTCATGCTACCAAGT 59.057 34.615 17.57 17.57 36.18 3.16
3896 4128 7.759489 AACTTGAAAATAGTCATGCTACCAA 57.241 32.000 0.00 0.00 31.59 3.67
3914 4146 6.072508 GGAAGCATCTATGTGTTGAAACTTGA 60.073 38.462 0.00 0.00 0.00 3.02
3918 4150 5.627499 TGGAAGCATCTATGTGTTGAAAC 57.373 39.130 0.00 0.00 0.00 2.78
3919 4151 5.357878 GGATGGAAGCATCTATGTGTTGAAA 59.642 40.000 0.00 0.00 0.00 2.69
3920 4152 4.883585 GGATGGAAGCATCTATGTGTTGAA 59.116 41.667 0.00 0.00 0.00 2.69
3921 4153 4.164796 AGGATGGAAGCATCTATGTGTTGA 59.835 41.667 0.00 0.00 0.00 3.18
3922 4154 4.458397 AGGATGGAAGCATCTATGTGTTG 58.542 43.478 0.00 0.00 0.00 3.33
3923 4155 4.785346 AGGATGGAAGCATCTATGTGTT 57.215 40.909 0.00 0.00 0.00 3.32
3924 4156 4.904251 AGTAGGATGGAAGCATCTATGTGT 59.096 41.667 0.00 0.00 0.00 3.72
3931 4163 2.968574 TGAGGAGTAGGATGGAAGCATC 59.031 50.000 0.00 0.00 0.00 3.91
3935 4167 6.054860 TCTTTTTGAGGAGTAGGATGGAAG 57.945 41.667 0.00 0.00 0.00 3.46
3964 4196 7.286087 ACATGAACATGCAACTGTATGGAATAT 59.714 33.333 13.71 0.01 41.53 1.28
3968 4200 4.334552 ACATGAACATGCAACTGTATGGA 58.665 39.130 13.71 0.00 41.53 3.41
3973 4205 5.474532 ACAGATTACATGAACATGCAACTGT 59.525 36.000 19.79 19.79 42.39 3.55
3974 4206 5.798434 CACAGATTACATGAACATGCAACTG 59.202 40.000 13.71 17.03 42.39 3.16
3980 4212 6.803320 GGTTGAACACAGATTACATGAACATG 59.197 38.462 12.43 12.43 44.15 3.21
3994 4226 3.565482 ACATGCAACTAGGTTGAACACAG 59.435 43.478 13.63 0.00 45.28 3.66
4025 4257 4.134563 GGATCGGGCACAAGTTACATATT 58.865 43.478 0.00 0.00 0.00 1.28
4045 4277 1.902918 GTGTGGGCATGCAACTGGA 60.903 57.895 21.36 0.00 0.00 3.86
4046 4278 2.652530 GTGTGGGCATGCAACTGG 59.347 61.111 21.36 0.00 0.00 4.00
4070 4302 2.110835 TCAGAGGCAAGTTGCGCA 59.889 55.556 21.11 5.66 46.21 6.09
4113 4345 3.006967 GGATCGGGTGAGTTGCATACTAT 59.993 47.826 0.00 0.00 37.17 2.12
4156 4388 0.025898 CATCGCGTGAGAGTTGCATG 59.974 55.000 5.77 0.00 0.00 4.06
4175 4407 3.748048 TGAAAGTCTAGACATGCAACTGC 59.252 43.478 24.44 0.00 42.50 4.40
4205 4437 1.621317 TGCAACTAGGTCGGACATGAA 59.379 47.619 10.76 0.00 0.00 2.57
4240 4472 2.549754 CGGAGTTGAAGACAAGTTGCAT 59.450 45.455 1.81 0.00 39.43 3.96
4247 4479 5.723672 AACTAGATCGGAGTTGAAGACAA 57.276 39.130 13.38 0.00 35.80 3.18
4255 4487 3.430929 GGACATGCAACTAGATCGGAGTT 60.431 47.826 9.52 9.52 37.64 3.01
4258 4490 2.107366 TGGACATGCAACTAGATCGGA 58.893 47.619 0.00 0.00 0.00 4.55
4264 4496 1.740380 CGAGGGTGGACATGCAACTAG 60.740 57.143 0.00 0.00 0.00 2.57
4283 4515 0.888736 TGGGGACAAGTTGCATGTCG 60.889 55.000 11.71 0.00 46.41 4.35
4284 4516 3.034924 TGGGGACAAGTTGCATGTC 57.965 52.632 9.93 9.93 45.08 3.06
4291 4523 5.973207 CGTATCACGGTTGGGGACAAGTT 62.973 52.174 0.00 0.00 41.62 2.66
4292 4524 4.556593 CGTATCACGGTTGGGGACAAGT 62.557 54.545 0.00 0.00 41.62 3.16
4293 4525 2.005065 CGTATCACGGTTGGGGACAAG 61.005 57.143 0.00 0.00 41.62 3.16
4294 4526 0.037139 CGTATCACGGTTGGGGACAA 60.037 55.000 0.00 0.00 42.75 3.18
4295 4527 1.592743 CGTATCACGGTTGGGGACA 59.407 57.895 0.00 0.00 38.08 4.02
4296 4528 4.507879 CGTATCACGGTTGGGGAC 57.492 61.111 0.00 0.00 38.08 4.46
4305 4537 2.628106 GCATGCAGCCGTATCACG 59.372 61.111 14.21 0.00 42.11 4.35
4314 4546 2.203266 GGAGGGTAGGCATGCAGC 60.203 66.667 21.36 9.46 44.65 5.25
4315 4547 1.153086 GTGGAGGGTAGGCATGCAG 60.153 63.158 21.36 0.00 0.00 4.41
4316 4548 1.281199 ATGTGGAGGGTAGGCATGCA 61.281 55.000 21.36 0.00 0.00 3.96
4317 4549 0.820891 CATGTGGAGGGTAGGCATGC 60.821 60.000 9.90 9.90 32.03 4.06
4318 4550 0.820891 GCATGTGGAGGGTAGGCATG 60.821 60.000 0.00 0.00 39.68 4.06
4319 4551 0.990282 AGCATGTGGAGGGTAGGCAT 60.990 55.000 0.00 0.00 0.00 4.40
4320 4552 0.326143 TAGCATGTGGAGGGTAGGCA 60.326 55.000 0.00 0.00 0.00 4.75
4321 4553 0.106894 GTAGCATGTGGAGGGTAGGC 59.893 60.000 0.00 0.00 0.00 3.93
4322 4554 1.794714 AGTAGCATGTGGAGGGTAGG 58.205 55.000 0.00 0.00 0.00 3.18
4323 4555 2.501723 ACAAGTAGCATGTGGAGGGTAG 59.498 50.000 0.00 0.00 0.00 3.18
4324 4556 2.236146 CACAAGTAGCATGTGGAGGGTA 59.764 50.000 0.00 0.00 43.45 3.69
4325 4557 1.003580 CACAAGTAGCATGTGGAGGGT 59.996 52.381 0.00 0.00 43.45 4.34
4326 4558 1.742761 CACAAGTAGCATGTGGAGGG 58.257 55.000 0.00 0.00 43.45 4.30
4332 4564 3.262420 GGATCGAACACAAGTAGCATGT 58.738 45.455 0.00 0.00 0.00 3.21
4333 4565 3.261580 TGGATCGAACACAAGTAGCATG 58.738 45.455 0.00 0.00 0.00 4.06
4334 4566 3.610040 TGGATCGAACACAAGTAGCAT 57.390 42.857 0.00 0.00 0.00 3.79
4335 4567 3.394674 TTGGATCGAACACAAGTAGCA 57.605 42.857 0.00 0.00 0.00 3.49
4336 4568 4.946784 AATTGGATCGAACACAAGTAGC 57.053 40.909 0.00 0.00 0.00 3.58
4337 4569 6.961359 TGTAATTGGATCGAACACAAGTAG 57.039 37.500 7.27 0.00 0.00 2.57
4338 4570 6.876789 ACATGTAATTGGATCGAACACAAGTA 59.123 34.615 0.00 0.00 0.00 2.24
4339 4571 5.705441 ACATGTAATTGGATCGAACACAAGT 59.295 36.000 0.00 8.95 0.00 3.16
4340 4572 6.182039 ACATGTAATTGGATCGAACACAAG 57.818 37.500 0.00 8.47 0.00 3.16
4341 4573 5.123186 GGACATGTAATTGGATCGAACACAA 59.877 40.000 0.00 0.00 0.00 3.33
4342 4574 4.634004 GGACATGTAATTGGATCGAACACA 59.366 41.667 0.00 8.53 0.00 3.72
4343 4575 4.634004 TGGACATGTAATTGGATCGAACAC 59.366 41.667 0.00 0.00 0.00 3.32
4344 4576 4.634004 GTGGACATGTAATTGGATCGAACA 59.366 41.667 0.00 0.00 0.00 3.18
4345 4577 4.035208 GGTGGACATGTAATTGGATCGAAC 59.965 45.833 0.00 0.00 0.00 3.95
4346 4578 4.196193 GGTGGACATGTAATTGGATCGAA 58.804 43.478 0.00 0.00 0.00 3.71
4347 4579 3.433031 GGGTGGACATGTAATTGGATCGA 60.433 47.826 0.00 0.00 0.00 3.59
4348 4580 2.878406 GGGTGGACATGTAATTGGATCG 59.122 50.000 0.00 0.00 0.00 3.69
4349 4581 4.137543 GAGGGTGGACATGTAATTGGATC 58.862 47.826 0.00 0.00 0.00 3.36
4350 4582 3.433598 CGAGGGTGGACATGTAATTGGAT 60.434 47.826 0.00 0.00 0.00 3.41
4351 4583 2.093181 CGAGGGTGGACATGTAATTGGA 60.093 50.000 0.00 0.00 0.00 3.53
4352 4584 2.288666 CGAGGGTGGACATGTAATTGG 58.711 52.381 0.00 0.00 0.00 3.16
4353 4585 1.670811 GCGAGGGTGGACATGTAATTG 59.329 52.381 0.00 0.00 0.00 2.32
4354 4586 1.408266 GGCGAGGGTGGACATGTAATT 60.408 52.381 0.00 0.00 0.00 1.40
4355 4587 0.180406 GGCGAGGGTGGACATGTAAT 59.820 55.000 0.00 0.00 0.00 1.89
4356 4588 1.195442 TGGCGAGGGTGGACATGTAA 61.195 55.000 0.00 0.00 0.00 2.41
4357 4589 1.610967 TGGCGAGGGTGGACATGTA 60.611 57.895 0.00 0.00 0.00 2.29
4358 4590 2.927856 TGGCGAGGGTGGACATGT 60.928 61.111 0.00 0.00 0.00 3.21
4359 4591 1.976132 ATCTGGCGAGGGTGGACATG 61.976 60.000 0.00 0.00 0.00 3.21
4360 4592 1.690633 ATCTGGCGAGGGTGGACAT 60.691 57.895 0.00 0.00 0.00 3.06
4361 4593 2.284625 ATCTGGCGAGGGTGGACA 60.285 61.111 0.00 0.00 0.00 4.02
4362 4594 1.899437 TTCATCTGGCGAGGGTGGAC 61.899 60.000 0.00 0.00 0.00 4.02
4363 4595 0.982852 ATTCATCTGGCGAGGGTGGA 60.983 55.000 0.00 0.00 0.00 4.02
4364 4596 0.533755 GATTCATCTGGCGAGGGTGG 60.534 60.000 0.00 0.00 0.00 4.61
4365 4597 0.178767 TGATTCATCTGGCGAGGGTG 59.821 55.000 0.00 0.00 0.00 4.61
4366 4598 1.135094 ATGATTCATCTGGCGAGGGT 58.865 50.000 0.00 0.00 0.00 4.34
4367 4599 2.267174 AATGATTCATCTGGCGAGGG 57.733 50.000 0.00 0.00 0.00 4.30
4368 4600 4.244066 CTCTAATGATTCATCTGGCGAGG 58.756 47.826 0.00 0.00 0.00 4.63
4369 4601 3.679025 GCTCTAATGATTCATCTGGCGAG 59.321 47.826 0.00 3.65 0.00 5.03
4370 4602 3.555795 GGCTCTAATGATTCATCTGGCGA 60.556 47.826 0.00 0.00 0.00 5.54
4371 4603 2.740981 GGCTCTAATGATTCATCTGGCG 59.259 50.000 0.00 0.00 0.00 5.69
4372 4604 3.080319 GGGCTCTAATGATTCATCTGGC 58.920 50.000 0.00 3.07 0.00 4.85
4373 4605 3.683802 GGGGCTCTAATGATTCATCTGG 58.316 50.000 0.00 0.00 0.00 3.86
4374 4606 3.244353 ACGGGGCTCTAATGATTCATCTG 60.244 47.826 0.00 0.00 0.00 2.90
4375 4607 2.975489 ACGGGGCTCTAATGATTCATCT 59.025 45.455 0.00 0.00 0.00 2.90
4376 4608 3.070018 CACGGGGCTCTAATGATTCATC 58.930 50.000 0.00 0.00 0.00 2.92
4377 4609 2.439507 ACACGGGGCTCTAATGATTCAT 59.560 45.455 0.00 0.00 0.00 2.57
4378 4610 1.837439 ACACGGGGCTCTAATGATTCA 59.163 47.619 0.00 0.00 0.00 2.57
4379 4611 2.158957 TCACACGGGGCTCTAATGATTC 60.159 50.000 0.00 0.00 0.00 2.52
4380 4612 1.837439 TCACACGGGGCTCTAATGATT 59.163 47.619 0.00 0.00 0.00 2.57
4381 4613 1.139058 GTCACACGGGGCTCTAATGAT 59.861 52.381 0.00 0.00 0.00 2.45
4382 4614 0.535335 GTCACACGGGGCTCTAATGA 59.465 55.000 0.00 0.00 0.00 2.57
4383 4615 0.249120 TGTCACACGGGGCTCTAATG 59.751 55.000 0.00 0.00 0.00 1.90
4384 4616 1.134401 CATGTCACACGGGGCTCTAAT 60.134 52.381 0.00 0.00 0.00 1.73
4385 4617 0.249120 CATGTCACACGGGGCTCTAA 59.751 55.000 0.00 0.00 0.00 2.10
4386 4618 1.897423 CATGTCACACGGGGCTCTA 59.103 57.895 0.00 0.00 0.00 2.43
4387 4619 2.665000 CATGTCACACGGGGCTCT 59.335 61.111 0.00 0.00 0.00 4.09
4388 4620 3.127533 GCATGTCACACGGGGCTC 61.128 66.667 0.00 0.00 0.00 4.70
4389 4621 3.490031 TTGCATGTCACACGGGGCT 62.490 57.895 0.00 0.00 0.00 5.19
4390 4622 2.983030 TTGCATGTCACACGGGGC 60.983 61.111 0.00 0.00 0.00 5.80
4391 4623 0.321210 TAGTTGCATGTCACACGGGG 60.321 55.000 0.00 0.00 0.00 5.73
4392 4624 1.398041 CATAGTTGCATGTCACACGGG 59.602 52.381 0.00 0.00 0.00 5.28
4393 4625 1.398041 CCATAGTTGCATGTCACACGG 59.602 52.381 0.00 0.00 0.00 4.94
4394 4626 1.202065 GCCATAGTTGCATGTCACACG 60.202 52.381 0.00 0.00 0.00 4.49
4395 4627 1.133025 GGCCATAGTTGCATGTCACAC 59.867 52.381 0.00 0.00 0.00 3.82
4396 4628 1.004628 AGGCCATAGTTGCATGTCACA 59.995 47.619 5.01 0.00 0.00 3.58
4397 4629 1.672881 GAGGCCATAGTTGCATGTCAC 59.327 52.381 5.01 0.00 0.00 3.67
4398 4630 1.743431 CGAGGCCATAGTTGCATGTCA 60.743 52.381 5.01 0.00 0.00 3.58
4399 4631 0.940126 CGAGGCCATAGTTGCATGTC 59.060 55.000 5.01 0.00 0.00 3.06
4400 4632 1.097547 GCGAGGCCATAGTTGCATGT 61.098 55.000 5.01 0.00 0.00 3.21
4401 4633 1.650912 GCGAGGCCATAGTTGCATG 59.349 57.895 5.01 0.00 0.00 4.06
4402 4634 4.147701 GCGAGGCCATAGTTGCAT 57.852 55.556 5.01 0.00 0.00 3.96
4423 4655 7.856556 GGACTTTCAACAAAGACAAACAAAAA 58.143 30.769 1.50 0.00 41.60 1.94
4424 4656 7.414814 GGACTTTCAACAAAGACAAACAAAA 57.585 32.000 1.50 0.00 41.60 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.