Multiple sequence alignment - TraesCS5D01G519900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G519900 chr5D 100.000 5499 0 0 1 5499 540350748 540345250 0.000000e+00 10155.0
1 TraesCS5D01G519900 chr5D 100.000 1920 0 0 5805 7724 540344944 540343025 0.000000e+00 3546.0
2 TraesCS5D01G519900 chr5D 90.909 253 13 4 224 472 540535318 540535564 1.610000e-86 331.0
3 TraesCS5D01G519900 chr5D 87.857 140 12 4 1 138 540535187 540535323 8.020000e-35 159.0
4 TraesCS5D01G519900 chr5B 91.682 5482 285 77 1 5446 682844246 682838900 0.000000e+00 7439.0
5 TraesCS5D01G519900 chr5B 89.350 554 38 16 5805 6342 682838873 682838325 0.000000e+00 676.0
6 TraesCS5D01G519900 chr5B 93.980 299 16 2 173 469 682846448 682846150 1.180000e-122 451.0
7 TraesCS5D01G519900 chr5B 83.631 336 27 16 6602 6924 682838008 682837688 2.730000e-74 291.0
8 TraesCS5D01G519900 chr5B 88.690 168 9 4 7439 7596 682837188 682837021 6.110000e-46 196.0
9 TraesCS5D01G519900 chr5B 88.742 151 16 1 7058 7208 682837611 682837462 4.760000e-42 183.0
10 TraesCS5D01G519900 chr5B 91.111 135 11 1 2 136 682846580 682846447 1.710000e-41 182.0
11 TraesCS5D01G519900 chr5B 90.476 63 2 1 7594 7652 682836998 682836936 6.430000e-11 80.5
12 TraesCS5D01G519900 chr4A 91.593 2046 153 12 1845 3883 628494831 628492798 0.000000e+00 2808.0
13 TraesCS5D01G519900 chr4A 92.968 1863 96 24 1 1840 628496847 628494997 0.000000e+00 2682.0
14 TraesCS5D01G519900 chr4A 85.490 1592 153 47 3885 5448 628492714 628491173 0.000000e+00 1589.0
15 TraesCS5D01G519900 chr4A 88.091 529 35 13 5829 6332 628491012 628490487 3.080000e-168 603.0
16 TraesCS5D01G519900 chr4A 85.656 244 19 10 6514 6741 628490248 628490005 7.740000e-60 243.0
17 TraesCS5D01G519900 chr4A 88.971 136 12 3 7058 7192 628489452 628489319 1.720000e-36 165.0
18 TraesCS5D01G519900 chr4A 89.796 49 5 0 7429 7477 628489081 628489033 6.470000e-06 63.9
19 TraesCS5D01G519900 chr3D 93.939 99 4 2 7051 7147 487405134 487405232 1.740000e-31 148.0
20 TraesCS5D01G519900 chr3D 88.618 123 9 4 7027 7147 486141967 486141848 2.250000e-30 145.0
21 TraesCS5D01G519900 chr3D 88.983 118 8 4 7032 7147 487409504 487409618 2.910000e-29 141.0
22 TraesCS5D01G519900 chr3B 93.069 101 5 2 7049 7147 650619958 650620058 6.250000e-31 147.0
23 TraesCS5D01G519900 chr3B 88.983 118 9 3 7032 7147 650616139 650616254 8.080000e-30 143.0
24 TraesCS5D01G519900 chr3A 93.069 101 5 2 7049 7147 631298844 631298944 6.250000e-31 147.0
25 TraesCS5D01G519900 chr3A 88.983 118 9 3 7032 7147 631294279 631294394 8.080000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G519900 chr5D 540343025 540350748 7723 True 6850.500000 10155 100.000000 1 7724 2 chr5D.!!$R1 7723
1 TraesCS5D01G519900 chr5B 682836936 682846580 9644 True 1187.312500 7439 89.707750 1 7652 8 chr5B.!!$R1 7651
2 TraesCS5D01G519900 chr4A 628489033 628496847 7814 True 1164.842857 2808 88.937857 1 7477 7 chr4A.!!$R1 7476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 3227 2.262915 GACGTCAGTGGCTGGAGG 59.737 66.667 11.55 0.0 31.51 4.30 F
1417 3766 0.669625 GTTTCCTTCTCGTCCACCGG 60.670 60.000 0.00 0.0 37.11 5.28 F
1781 4160 0.036164 ATGTTGGCGGTGTGCTCTTA 59.964 50.000 0.00 0.0 45.43 2.10 F
1784 4163 0.107831 TTGGCGGTGTGCTCTTACTT 59.892 50.000 0.00 0.0 45.43 2.24 F
2095 4635 0.251787 GGTCCAAGGTGGGCATCTTT 60.252 55.000 0.64 0.0 45.98 2.52 F
2180 4720 0.446616 GTGGCTTACTTTGCTACCGC 59.553 55.000 0.00 0.0 36.18 5.68 F
2182 4722 1.271163 TGGCTTACTTTGCTACCGCTT 60.271 47.619 0.00 0.0 36.97 4.68 F
3034 5594 1.303309 CCTGGCAATCAGTCGGATTC 58.697 55.000 0.00 0.0 44.41 2.52 F
3595 6160 1.595093 AAAGGAAAATGGCGCCTCGG 61.595 55.000 29.70 0.0 0.00 4.63 F
4644 7305 0.318762 AAGTTCCACGAGGCAGAGAC 59.681 55.000 0.00 0.0 33.74 3.36 F
6525 9473 0.108138 CGTAGGGCTTGGGAAGTCTG 60.108 60.000 0.00 0.0 32.49 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 4133 0.039256 CACCGCCAACATTTCAGTGG 60.039 55.000 0.00 0.0 35.96 4.00 R
2751 5311 3.251245 TGCGCTTTCCGTGAAATTTAAGA 59.749 39.130 9.73 0.0 39.71 2.10 R
3449 6013 0.114954 TGCAGCCCTCCTGGAAAAAT 59.885 50.000 0.00 0.0 39.11 1.82 R
3595 6160 1.338484 TGTGCTGATCTCCAAGCTGTC 60.338 52.381 4.59 0.0 0.00 3.51 R
3854 6420 1.374758 CCACAGGCTTCCGTCAGTC 60.375 63.158 0.00 0.0 0.00 3.51 R
3986 6634 2.755650 CCTGTGACTGTAACTGGTGTC 58.244 52.381 11.98 0.0 33.30 3.67 R
4288 6948 7.734538 ACTGTTTTTATTAAATTCGCCATCG 57.265 32.000 0.00 0.0 0.00 3.84 R
4592 7253 0.390866 CAGATGCTTGCTCCGACTGT 60.391 55.000 0.00 0.0 0.00 3.55 R
5328 8013 0.456653 CGGCTGCAACCAACATTAGC 60.457 55.000 6.99 0.0 0.00 3.09 R
6591 9547 0.034059 GTCCTCTCCCACCATATGCG 59.966 60.000 0.00 0.0 0.00 4.73 R
7531 10877 0.110486 AGTTTGGCACCTACCACTGG 59.890 55.000 0.00 0.0 40.19 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
652 3000 3.891049 AGTGGTTAAGATCAATGGGCTC 58.109 45.455 0.00 0.00 0.00 4.70
878 3227 2.262915 GACGTCAGTGGCTGGAGG 59.737 66.667 11.55 0.00 31.51 4.30
936 3285 3.148279 CTCGTCCCCTCCTTCCCG 61.148 72.222 0.00 0.00 0.00 5.14
1417 3766 0.669625 GTTTCCTTCTCGTCCACCGG 60.670 60.000 0.00 0.00 37.11 5.28
1418 3767 2.444700 TTTCCTTCTCGTCCACCGGC 62.445 60.000 0.00 0.00 37.11 6.13
1572 3924 1.589993 CTACTGGCACATCGAGGCG 60.590 63.158 0.00 0.00 38.20 5.52
1642 3994 6.279882 GTCTTCTCTTCACCATAATCTCCTG 58.720 44.000 0.00 0.00 0.00 3.86
1647 3999 5.211973 TCTTCACCATAATCTCCTGCTAGT 58.788 41.667 0.00 0.00 0.00 2.57
1649 4001 6.839134 TCTTCACCATAATCTCCTGCTAGTAA 59.161 38.462 0.00 0.00 0.00 2.24
1655 4007 8.934697 ACCATAATCTCCTGCTAGTAATTGTTA 58.065 33.333 0.00 0.00 0.00 2.41
1660 4012 9.553064 AATCTCCTGCTAGTAATTGTTATTCAG 57.447 33.333 0.00 0.00 0.00 3.02
1661 4013 8.079211 TCTCCTGCTAGTAATTGTTATTCAGT 57.921 34.615 0.00 0.00 0.00 3.41
1662 4014 8.540388 TCTCCTGCTAGTAATTGTTATTCAGTT 58.460 33.333 0.00 0.00 0.00 3.16
1663 4015 8.718102 TCCTGCTAGTAATTGTTATTCAGTTC 57.282 34.615 0.00 0.00 0.00 3.01
1664 4016 8.318412 TCCTGCTAGTAATTGTTATTCAGTTCA 58.682 33.333 0.00 0.00 0.00 3.18
1665 4017 8.946085 CCTGCTAGTAATTGTTATTCAGTTCAA 58.054 33.333 0.00 0.00 0.00 2.69
1674 4026 9.491675 AATTGTTATTCAGTTCAATTGCATTGA 57.508 25.926 0.00 0.00 46.77 2.57
1754 4133 0.179129 CGTGGGGCAAAATGAGATGC 60.179 55.000 0.00 0.00 41.82 3.91
1767 4146 4.713824 ATGAGATGCCACTGAAATGTTG 57.286 40.909 0.00 0.00 0.00 3.33
1774 4153 0.667993 CACTGAAATGTTGGCGGTGT 59.332 50.000 0.00 0.00 34.92 4.16
1778 4157 0.387239 GAAATGTTGGCGGTGTGCTC 60.387 55.000 0.00 0.00 45.43 4.26
1779 4158 0.823356 AAATGTTGGCGGTGTGCTCT 60.823 50.000 0.00 0.00 45.43 4.09
1780 4159 0.823356 AATGTTGGCGGTGTGCTCTT 60.823 50.000 0.00 0.00 45.43 2.85
1781 4160 0.036164 ATGTTGGCGGTGTGCTCTTA 59.964 50.000 0.00 0.00 45.43 2.10
1783 4162 0.602905 GTTGGCGGTGTGCTCTTACT 60.603 55.000 0.00 0.00 45.43 2.24
1784 4163 0.107831 TTGGCGGTGTGCTCTTACTT 59.892 50.000 0.00 0.00 45.43 2.24
1793 4172 5.238583 GGTGTGCTCTTACTTACTGAATGT 58.761 41.667 0.00 0.00 0.00 2.71
1800 4179 7.549134 TGCTCTTACTTACTGAATGTATTGGTG 59.451 37.037 0.00 0.00 0.00 4.17
1801 4180 7.011482 GCTCTTACTTACTGAATGTATTGGTGG 59.989 40.741 0.00 0.00 0.00 4.61
1809 4188 5.109500 TGAATGTATTGGTGGCATCTGTA 57.891 39.130 0.00 0.00 0.00 2.74
1810 4189 5.504853 TGAATGTATTGGTGGCATCTGTAA 58.495 37.500 0.00 0.00 0.00 2.41
1817 4196 3.205338 TGGTGGCATCTGTAAATGATCG 58.795 45.455 0.00 0.00 0.00 3.69
1826 4205 7.255104 GGCATCTGTAAATGATCGGTTGATTAA 60.255 37.037 0.00 0.00 34.09 1.40
1830 4209 8.038351 TCTGTAAATGATCGGTTGATTAAGTCA 58.962 33.333 0.00 0.00 34.09 3.41
1831 4210 8.731275 TGTAAATGATCGGTTGATTAAGTCAT 57.269 30.769 0.00 0.00 36.54 3.06
1840 4219 5.005779 CGGTTGATTAAGTCATGACTACTGC 59.994 44.000 28.10 17.67 41.58 4.40
1843 4383 7.404985 GTTGATTAAGTCATGACTACTGCATG 58.595 38.462 28.10 0.00 41.58 4.06
1847 4387 4.677673 AGTCATGACTACTGCATGCATA 57.322 40.909 26.87 14.22 42.13 3.14
1888 4428 6.264832 TGCATGTGTTGTTTCTTCTTGTTAG 58.735 36.000 0.00 0.00 0.00 2.34
1906 4446 2.789409 AGGTTGTGGGTAGCAGATTC 57.211 50.000 0.00 0.00 0.00 2.52
1916 4456 4.228210 TGGGTAGCAGATTCAAAGAGGATT 59.772 41.667 0.00 0.00 0.00 3.01
1933 4473 3.388350 AGGATTAATGGTCTCCCTCGTTC 59.612 47.826 0.00 0.00 0.00 3.95
1939 4479 1.340795 TGGTCTCCCTCGTTCTCTACC 60.341 57.143 0.00 0.00 0.00 3.18
1945 4485 3.816523 CTCCCTCGTTCTCTACCTATGTC 59.183 52.174 0.00 0.00 0.00 3.06
1953 4493 5.868258 CGTTCTCTACCTATGTCGAGCTATA 59.132 44.000 0.00 0.00 35.00 1.31
1955 4495 7.705752 CGTTCTCTACCTATGTCGAGCTATATA 59.294 40.741 0.00 0.00 35.00 0.86
1956 4496 9.037737 GTTCTCTACCTATGTCGAGCTATATAG 57.962 40.741 5.30 5.30 35.00 1.31
2012 4552 0.389817 CGCAGGTTGATGGACGAGAA 60.390 55.000 0.00 0.00 0.00 2.87
2051 4591 5.464965 TCGATGGCGACTTTAAGAAATTC 57.535 39.130 0.00 0.00 42.51 2.17
2066 4606 4.923415 AGAAATTCGAAGGGAAATGGTCT 58.077 39.130 3.35 0.00 38.36 3.85
2095 4635 0.251787 GGTCCAAGGTGGGCATCTTT 60.252 55.000 0.64 0.00 45.98 2.52
2096 4636 1.177401 GTCCAAGGTGGGCATCTTTC 58.823 55.000 0.00 0.00 42.98 2.62
2097 4637 0.776810 TCCAAGGTGGGCATCTTTCA 59.223 50.000 0.00 0.00 38.32 2.69
2111 4651 5.521372 GGCATCTTTCAGTCATTTTTATGCC 59.479 40.000 6.74 6.74 46.94 4.40
2132 4672 5.712446 TGCCTTGTTTGTAACATATGCCTTA 59.288 36.000 1.58 0.00 41.79 2.69
2143 4683 4.392940 ACATATGCCTTAAGTGAGCATCC 58.607 43.478 17.55 0.00 43.58 3.51
2147 4687 6.796673 TATGCCTTAAGTGAGCATCCAGCC 62.797 50.000 17.55 0.00 43.58 4.85
2159 4699 3.785486 GCATCCAGCCTTTTAAATCCAC 58.215 45.455 0.00 0.00 37.23 4.02
2164 4704 3.056607 CCAGCCTTTTAAATCCACAGTGG 60.057 47.826 14.19 14.19 39.43 4.00
2169 4709 5.709966 CCTTTTAAATCCACAGTGGCTTAC 58.290 41.667 15.64 0.00 37.47 2.34
2170 4710 5.476945 CCTTTTAAATCCACAGTGGCTTACT 59.523 40.000 15.64 0.04 41.36 2.24
2173 4713 4.853924 AAATCCACAGTGGCTTACTTTG 57.146 40.909 15.64 2.21 37.60 2.77
2174 4714 1.604604 TCCACAGTGGCTTACTTTGC 58.395 50.000 15.64 0.00 37.60 3.68
2175 4715 1.142870 TCCACAGTGGCTTACTTTGCT 59.857 47.619 15.64 0.00 37.60 3.91
2176 4716 2.370519 TCCACAGTGGCTTACTTTGCTA 59.629 45.455 15.64 0.00 37.60 3.49
2178 4718 2.484264 CACAGTGGCTTACTTTGCTACC 59.516 50.000 0.00 0.00 41.80 3.18
2179 4719 1.732259 CAGTGGCTTACTTTGCTACCG 59.268 52.381 0.00 0.00 41.80 4.02
2180 4720 0.446616 GTGGCTTACTTTGCTACCGC 59.553 55.000 0.00 0.00 36.18 5.68
2182 4722 1.271163 TGGCTTACTTTGCTACCGCTT 60.271 47.619 0.00 0.00 36.97 4.68
2184 4724 3.004862 GGCTTACTTTGCTACCGCTTAA 58.995 45.455 0.00 0.00 36.97 1.85
2186 4726 3.063588 GCTTACTTTGCTACCGCTTAAGG 59.936 47.826 4.29 0.00 34.77 2.69
2191 4731 1.523938 GCTACCGCTTAAGGCCTGG 60.524 63.158 5.69 4.97 37.74 4.45
2236 4776 5.723887 AGGGATCCTTAGATTATTCATCGCT 59.276 40.000 12.58 0.00 36.93 4.93
2269 4809 5.460646 TGAACATCAGAAAAAGAATTCCGC 58.539 37.500 0.65 0.00 0.00 5.54
2280 4820 8.401709 AGAAAAAGAATTCCGCTCATAAATCTC 58.598 33.333 0.65 0.00 0.00 2.75
2356 4902 7.534085 TGAAGTTAATGTGATACCACGATTC 57.466 36.000 0.00 0.00 46.06 2.52
2362 4908 9.567848 GTTAATGTGATACCACGATTCAATTTT 57.432 29.630 0.00 0.00 46.06 1.82
2539 5085 4.805719 GCAACAGTCGAGAATGATGTCATA 59.194 41.667 7.57 0.00 35.10 2.15
2733 5293 6.808321 AACTGACTAAGCTTATACCCATCA 57.192 37.500 6.64 4.07 0.00 3.07
2734 5294 6.808321 ACTGACTAAGCTTATACCCATCAA 57.192 37.500 6.64 0.00 0.00 2.57
2735 5295 7.195374 ACTGACTAAGCTTATACCCATCAAA 57.805 36.000 6.64 0.00 0.00 2.69
2736 5296 7.806180 ACTGACTAAGCTTATACCCATCAAAT 58.194 34.615 6.64 0.00 0.00 2.32
2737 5297 8.934697 ACTGACTAAGCTTATACCCATCAAATA 58.065 33.333 6.64 0.00 0.00 1.40
2738 5298 9.778741 CTGACTAAGCTTATACCCATCAAATAA 57.221 33.333 6.64 0.00 0.00 1.40
2771 5331 5.225129 CGATTCTTAAATTTCACGGAAAGCG 59.775 40.000 0.00 1.61 34.92 4.68
2957 5517 4.580868 TGCGGTATTTGGAGTTCACATAA 58.419 39.130 0.00 0.00 0.00 1.90
2982 5542 6.806751 TCTACTTCCAATACACAGCTATGAC 58.193 40.000 0.00 0.00 0.00 3.06
3034 5594 1.303309 CCTGGCAATCAGTCGGATTC 58.697 55.000 0.00 0.00 44.41 2.52
3113 5673 7.403312 TTTACATGATATTCTGGTTGGTTGG 57.597 36.000 0.00 0.00 0.00 3.77
3374 5938 4.820744 CAATGCCCCCTGTCCCCG 62.821 72.222 0.00 0.00 0.00 5.73
3397 5961 6.480320 CCGAAGATCCTTCTCGACATAATTTT 59.520 38.462 5.34 0.00 0.00 1.82
3449 6013 8.389779 TGCAAGTTTTGTAACATCTCAGATTA 57.610 30.769 0.00 0.00 36.70 1.75
3595 6160 1.595093 AAAGGAAAATGGCGCCTCGG 61.595 55.000 29.70 0.00 0.00 4.63
3674 6239 6.538945 AAAGATACCTTTCTCTCAGAGTCC 57.461 41.667 0.36 0.00 38.13 3.85
3854 6420 8.857694 TTTATTTGGGAAAGAACTACACTAGG 57.142 34.615 0.00 0.00 0.00 3.02
3865 6431 3.345414 ACTACACTAGGACTGACGGAAG 58.655 50.000 0.00 0.00 0.00 3.46
3930 6578 8.039603 TGTATCATCTTGTTGAATGTACCAAC 57.960 34.615 6.55 6.55 42.96 3.77
4288 6948 3.809832 AGGTATCATCGCTATGCAAACAC 59.190 43.478 0.00 0.00 32.76 3.32
4336 6996 9.606631 AGTTCTGATCTCAAATATTTGTAGGTC 57.393 33.333 23.95 22.58 39.18 3.85
4396 7056 6.801539 TTTCATGGTTATCTCACTGTTGTC 57.198 37.500 0.00 0.00 0.00 3.18
4463 7124 6.570692 TCCTTTTCAGGTCATATACGAAGAC 58.429 40.000 0.00 0.00 41.69 3.01
4531 7192 4.161377 AGAAGCTGAGAGAGGTAATTCCAC 59.839 45.833 0.00 0.00 39.02 4.02
4558 7219 2.807622 GGATGCGCCAACCAATCC 59.192 61.111 4.18 5.58 36.34 3.01
4576 7237 5.124457 CCAATCCAGATACTGTTCCTTTGTG 59.876 44.000 0.00 0.00 0.00 3.33
4592 7253 3.804786 TTGTGTTACACAGAAGGACGA 57.195 42.857 17.87 0.00 45.39 4.20
4596 7257 2.691526 TGTTACACAGAAGGACGACAGT 59.308 45.455 0.00 0.00 0.00 3.55
4627 7288 4.634883 AGCATCTGTACATTGCTCTTCAAG 59.365 41.667 21.52 0.00 42.88 3.02
4634 7295 2.549754 ACATTGCTCTTCAAGTTCCACG 59.450 45.455 0.00 0.00 38.22 4.94
4640 7301 1.151668 CTTCAAGTTCCACGAGGCAG 58.848 55.000 0.00 0.00 33.74 4.85
4644 7305 0.318762 AAGTTCCACGAGGCAGAGAC 59.681 55.000 0.00 0.00 33.74 3.36
4688 7349 2.827652 GACATCGAGGTCCTGAAATCC 58.172 52.381 19.13 0.00 0.00 3.01
4754 7415 4.894784 TGCCTAAGAGAAAACATCTTCGT 58.105 39.130 0.00 0.00 38.96 3.85
4763 7424 4.695455 AGAAAACATCTTCGTACACATGGG 59.305 41.667 0.00 0.00 33.39 4.00
4775 7436 5.009710 TCGTACACATGGGAGAGTTGATATC 59.990 44.000 0.00 0.00 0.00 1.63
4890 7551 4.778213 TGGGATAATCTGGAGAACTTGG 57.222 45.455 0.00 0.00 0.00 3.61
4905 7566 4.656112 AGAACTTGGAAGAAGAGGTGAGAA 59.344 41.667 0.00 0.00 0.00 2.87
4908 7570 5.946486 ACTTGGAAGAAGAGGTGAGAAAAT 58.054 37.500 0.00 0.00 0.00 1.82
4910 7572 6.937465 ACTTGGAAGAAGAGGTGAGAAAATAC 59.063 38.462 0.00 0.00 0.00 1.89
4911 7573 6.688073 TGGAAGAAGAGGTGAGAAAATACT 57.312 37.500 0.00 0.00 0.00 2.12
4939 7605 4.640771 TTTCATCCCTCTGCTTTGTAGT 57.359 40.909 0.00 0.00 0.00 2.73
4941 7607 5.344743 TTCATCCCTCTGCTTTGTAGTAG 57.655 43.478 0.00 0.00 35.63 2.57
4942 7608 4.610333 TCATCCCTCTGCTTTGTAGTAGA 58.390 43.478 0.00 0.00 40.30 2.59
4943 7609 4.402793 TCATCCCTCTGCTTTGTAGTAGAC 59.597 45.833 0.00 0.00 38.08 2.59
4944 7610 2.753452 TCCCTCTGCTTTGTAGTAGACG 59.247 50.000 0.00 0.00 38.08 4.18
4945 7611 2.492484 CCCTCTGCTTTGTAGTAGACGT 59.508 50.000 0.00 0.00 38.08 4.34
4946 7612 3.427773 CCCTCTGCTTTGTAGTAGACGTC 60.428 52.174 7.70 7.70 38.08 4.34
4947 7613 3.427773 CCTCTGCTTTGTAGTAGACGTCC 60.428 52.174 13.01 0.00 38.08 4.79
4948 7614 3.151554 TCTGCTTTGTAGTAGACGTCCA 58.848 45.455 13.01 0.00 38.08 4.02
4949 7615 3.190744 TCTGCTTTGTAGTAGACGTCCAG 59.809 47.826 13.01 8.27 38.08 3.86
4979 7647 3.565764 ACAAGGCTGCTAGCATCATAA 57.434 42.857 19.72 0.00 44.75 1.90
5007 7675 2.977914 AGCTTCAACGCTGTATCATGT 58.022 42.857 0.00 0.00 39.16 3.21
5008 7676 2.932614 AGCTTCAACGCTGTATCATGTC 59.067 45.455 0.00 0.00 39.16 3.06
5009 7677 2.932614 GCTTCAACGCTGTATCATGTCT 59.067 45.455 0.00 0.00 0.00 3.41
5015 7683 3.262420 ACGCTGTATCATGTCTTGGAAC 58.738 45.455 0.00 0.00 0.00 3.62
5029 7697 6.299141 TGTCTTGGAACTGAAGAAGCTAAAT 58.701 36.000 0.00 0.00 31.27 1.40
5085 7754 5.902613 TGAATTGCTAGTGAAGGAAATGG 57.097 39.130 0.00 0.00 39.20 3.16
5113 7788 1.800315 CTCCGTTCTACGTGTGCCG 60.800 63.158 0.00 0.00 40.58 5.69
5134 7812 5.510323 GCCGTACTTGTTGTATTATGTTTGC 59.490 40.000 0.00 0.00 33.23 3.68
5157 7835 7.767261 TGCATTTTAGTTGTTACTTGTTCAGT 58.233 30.769 0.00 0.00 39.87 3.41
5169 7847 7.710044 TGTTACTTGTTCAGTTTACGGTCATAA 59.290 33.333 0.00 0.00 36.88 1.90
5176 7861 9.275398 TGTTCAGTTTACGGTCATAATTTAACT 57.725 29.630 0.00 0.00 0.00 2.24
5186 7871 7.495934 ACGGTCATAATTTAACTCTGAGAATGG 59.504 37.037 12.44 0.00 0.00 3.16
5195 7880 2.295885 CTCTGAGAATGGCCATTGTCC 58.704 52.381 38.55 26.22 39.51 4.02
5253 7938 5.307196 GGACCCTTCTTATATGCCAAGTAGA 59.693 44.000 0.00 0.00 0.00 2.59
5256 7941 7.639378 ACCCTTCTTATATGCCAAGTAGAAAA 58.361 34.615 0.00 0.00 0.00 2.29
5277 7962 1.628846 TCTTTTGAGAGGGCAGGTACC 59.371 52.381 2.73 2.73 0.00 3.34
5287 7972 2.505819 AGGGCAGGTACCTGATTACTTG 59.494 50.000 40.26 16.70 46.30 3.16
5300 7985 5.643777 CCTGATTACTTGTACTTGGACCAAG 59.356 44.000 29.13 29.13 45.85 3.61
5319 8004 5.592688 ACCAAGTTAAATATGGGATTGACCG 59.407 40.000 7.20 0.00 38.58 4.79
5324 8009 7.116736 AGTTAAATATGGGATTGACCGTTCTT 58.883 34.615 0.00 0.00 40.11 2.52
5328 8013 2.778299 TGGGATTGACCGTTCTTCTTG 58.222 47.619 0.00 0.00 40.11 3.02
5338 8023 3.502211 ACCGTTCTTCTTGCTAATGTTGG 59.498 43.478 0.00 0.00 0.00 3.77
5346 8031 0.602562 TGCTAATGTTGGTTGCAGCC 59.397 50.000 13.50 13.50 0.00 4.85
5352 8037 1.599797 GTTGGTTGCAGCCGGTACT 60.600 57.895 15.43 0.00 0.00 2.73
5363 8050 1.029947 GCCGGTACTCCATTTGGGTG 61.030 60.000 1.90 0.00 38.11 4.61
5383 8070 7.051623 TGGGTGTGTAATTAGTCAATGTATCC 58.948 38.462 0.00 0.00 0.00 2.59
5397 8084 7.721399 AGTCAATGTATCCTTTTTATGGCCTAG 59.279 37.037 3.32 0.00 0.00 3.02
5400 8087 8.352942 CAATGTATCCTTTTTATGGCCTAGTTC 58.647 37.037 3.32 0.00 0.00 3.01
5404 8091 9.220767 GTATCCTTTTTATGGCCTAGTTCTATG 57.779 37.037 3.32 0.00 0.00 2.23
5405 8092 6.062095 TCCTTTTTATGGCCTAGTTCTATGC 58.938 40.000 3.32 0.00 0.00 3.14
5411 8098 1.138266 GGCCTAGTTCTATGCGGTCAA 59.862 52.381 0.00 0.00 0.00 3.18
5417 8104 2.159085 AGTTCTATGCGGTCAAGTAGCC 60.159 50.000 0.00 0.00 0.00 3.93
5418 8105 1.480789 TCTATGCGGTCAAGTAGCCA 58.519 50.000 0.00 0.00 0.00 4.75
5446 8133 3.251479 TGCCACTGCACTATCTGTTAG 57.749 47.619 0.00 0.00 44.23 2.34
5447 8134 2.567169 TGCCACTGCACTATCTGTTAGT 59.433 45.455 0.00 0.00 44.23 2.24
5448 8135 3.767131 TGCCACTGCACTATCTGTTAGTA 59.233 43.478 0.00 0.00 44.23 1.82
5449 8136 4.113354 GCCACTGCACTATCTGTTAGTAC 58.887 47.826 0.00 0.00 39.19 2.73
5451 8138 5.583495 CCACTGCACTATCTGTTAGTACTC 58.417 45.833 0.00 0.00 39.19 2.59
5452 8139 5.450688 CCACTGCACTATCTGTTAGTACTCC 60.451 48.000 0.00 0.00 39.19 3.85
5453 8140 5.125578 CACTGCACTATCTGTTAGTACTCCA 59.874 44.000 0.00 0.00 39.19 3.86
5454 8141 5.715279 ACTGCACTATCTGTTAGTACTCCAA 59.285 40.000 0.00 0.00 39.19 3.53
5455 8142 6.210784 ACTGCACTATCTGTTAGTACTCCAAA 59.789 38.462 0.00 0.00 39.19 3.28
5456 8143 7.093289 ACTGCACTATCTGTTAGTACTCCAAAT 60.093 37.037 0.00 0.00 39.19 2.32
5457 8144 8.301252 TGCACTATCTGTTAGTACTCCAAATA 57.699 34.615 0.00 0.00 39.19 1.40
5458 8145 8.414003 TGCACTATCTGTTAGTACTCCAAATAG 58.586 37.037 0.00 6.47 39.19 1.73
5459 8146 7.382759 GCACTATCTGTTAGTACTCCAAATAGC 59.617 40.741 0.00 0.00 39.19 2.97
5460 8147 7.868415 CACTATCTGTTAGTACTCCAAATAGCC 59.132 40.741 0.00 0.00 39.19 3.93
5461 8148 6.808321 ATCTGTTAGTACTCCAAATAGCCA 57.192 37.500 0.00 0.00 0.00 4.75
5462 8149 6.808321 TCTGTTAGTACTCCAAATAGCCAT 57.192 37.500 0.00 0.00 0.00 4.40
5463 8150 6.582636 TCTGTTAGTACTCCAAATAGCCATG 58.417 40.000 0.00 0.00 0.00 3.66
5464 8151 5.680619 TGTTAGTACTCCAAATAGCCATGG 58.319 41.667 7.63 7.63 38.09 3.66
5465 8152 3.214696 AGTACTCCAAATAGCCATGGC 57.785 47.619 30.12 30.12 42.33 4.40
5466 8153 2.158608 AGTACTCCAAATAGCCATGGCC 60.159 50.000 33.14 15.39 43.17 5.36
5467 8154 0.630673 ACTCCAAATAGCCATGGCCA 59.369 50.000 33.14 21.73 43.17 5.36
5468 8155 1.006998 ACTCCAAATAGCCATGGCCAA 59.993 47.619 33.14 22.00 43.17 4.52
5469 8156 2.109774 CTCCAAATAGCCATGGCCAAA 58.890 47.619 33.14 19.29 43.17 3.28
5470 8157 2.101917 CTCCAAATAGCCATGGCCAAAG 59.898 50.000 33.14 18.50 43.17 2.77
5474 8161 3.951563 AATAGCCATGGCCAAAGAGTA 57.048 42.857 33.14 17.11 43.17 2.59
5487 8174 6.542370 TGGCCAAAGAGTATTGCTTAAGATAC 59.458 38.462 0.61 6.45 0.00 2.24
5490 8177 7.931948 GCCAAAGAGTATTGCTTAAGATACCTA 59.068 37.037 6.67 0.00 30.74 3.08
5498 8186 2.905085 GCTTAAGATACCTAGGACCCCC 59.095 54.545 17.98 0.00 0.00 5.40
5854 8649 5.350640 AGTTTTCTACTACAGCCGTTATTGC 59.649 40.000 0.00 0.00 34.56 3.56
5865 8660 2.403698 GCCGTTATTGCTGACGTTTTTG 59.596 45.455 0.00 0.00 37.56 2.44
5977 8790 3.997021 CGTGCCATGGGTTTCTATCTATC 59.003 47.826 15.13 0.00 0.00 2.08
5978 8791 4.503123 CGTGCCATGGGTTTCTATCTATCA 60.503 45.833 15.13 0.00 0.00 2.15
6016 8829 7.060383 CCAGTCATGTGGTCTATAATTCTCT 57.940 40.000 0.00 0.00 32.32 3.10
6019 8832 9.853555 CAGTCATGTGGTCTATAATTCTCTATC 57.146 37.037 0.00 0.00 0.00 2.08
6043 8865 2.190578 CCATGGCCGGTCTTCCTC 59.809 66.667 7.97 0.00 0.00 3.71
6072 8894 3.118956 GGTCTCCACACTCTGTTATCCTG 60.119 52.174 0.00 0.00 0.00 3.86
6181 9007 2.032071 CGGAAGCAAACGGACCCT 59.968 61.111 0.00 0.00 0.00 4.34
6205 9031 3.267860 GAGCTGCAGCCCGAATCG 61.268 66.667 34.39 0.00 43.38 3.34
6383 9239 3.623960 TCCGACCTGTAAAAACAAGTGTG 59.376 43.478 0.00 0.00 0.00 3.82
6385 9241 4.571580 CCGACCTGTAAAAACAAGTGTGTA 59.428 41.667 0.00 0.00 36.80 2.90
6386 9242 5.064962 CCGACCTGTAAAAACAAGTGTGTAA 59.935 40.000 0.00 0.00 36.80 2.41
6387 9243 5.961263 CGACCTGTAAAAACAAGTGTGTAAC 59.039 40.000 0.00 0.00 36.80 2.50
6407 9264 8.410912 GTGTAACAGAAAAATAAAAGGTGAGGT 58.589 33.333 0.00 0.00 36.32 3.85
6414 9283 3.646736 ATAAAAGGTGAGGTACTGGCC 57.353 47.619 0.00 0.00 41.55 5.36
6439 9308 3.700970 TCCTGCATGGAACGCCGA 61.701 61.111 0.00 0.00 42.94 5.54
6440 9309 2.514592 CCTGCATGGAACGCCGAT 60.515 61.111 0.00 0.00 38.35 4.18
6443 9312 2.584970 GCATGGAACGCCGATCGA 60.585 61.111 18.66 0.00 41.67 3.59
6444 9313 2.589492 GCATGGAACGCCGATCGAG 61.589 63.158 18.66 12.76 41.67 4.04
6447 9316 0.108329 ATGGAACGCCGATCGAGTTT 60.108 50.000 22.90 11.26 41.67 2.66
6448 9317 0.320073 TGGAACGCCGATCGAGTTTT 60.320 50.000 22.90 9.75 41.67 2.43
6449 9318 0.369248 GGAACGCCGATCGAGTTTTC 59.631 55.000 22.90 16.01 41.67 2.29
6450 9319 1.347320 GAACGCCGATCGAGTTTTCT 58.653 50.000 22.90 7.55 41.67 2.52
6451 9320 1.725164 GAACGCCGATCGAGTTTTCTT 59.275 47.619 22.90 7.25 41.67 2.52
6454 9323 2.546789 ACGCCGATCGAGTTTTCTTTTT 59.453 40.909 18.66 0.00 41.67 1.94
6455 9324 3.153735 CGCCGATCGAGTTTTCTTTTTC 58.846 45.455 18.66 0.00 41.67 2.29
6456 9325 3.120649 CGCCGATCGAGTTTTCTTTTTCT 60.121 43.478 18.66 0.00 41.67 2.52
6458 9327 4.669453 GCCGATCGAGTTTTCTTTTTCTCC 60.669 45.833 18.66 0.00 0.00 3.71
6480 9411 3.246619 CGTCTGTCAAAGCTCTAGAACC 58.753 50.000 0.00 0.00 0.00 3.62
6497 9428 4.016706 CGGAGGTTTCTGCCGGGT 62.017 66.667 2.18 0.00 41.29 5.28
6520 9468 1.550130 CCTGACGTAGGGCTTGGGAA 61.550 60.000 0.00 0.00 43.33 3.97
6525 9473 0.108138 CGTAGGGCTTGGGAAGTCTG 60.108 60.000 0.00 0.00 32.49 3.51
6528 9476 0.984995 AGGGCTTGGGAAGTCTGTAC 59.015 55.000 0.00 0.00 32.49 2.90
6550 9501 2.876645 GTCAGCTTCCTCGTCGCG 60.877 66.667 0.00 0.00 0.00 5.87
6551 9502 3.362797 TCAGCTTCCTCGTCGCGT 61.363 61.111 5.77 0.00 0.00 6.01
6552 9503 2.036571 TCAGCTTCCTCGTCGCGTA 61.037 57.895 5.77 0.00 0.00 4.42
6553 9504 1.583967 CAGCTTCCTCGTCGCGTAG 60.584 63.158 5.77 0.91 0.00 3.51
6568 9524 2.353579 CGCGTAGAATTGGTAAAAGGGG 59.646 50.000 0.00 0.00 0.00 4.79
6576 9532 9.588096 GTAGAATTGGTAAAAGGGGATCATTAT 57.412 33.333 0.00 0.00 0.00 1.28
6590 9546 4.452455 GGATCATTATAAGTGGGAAGTGCG 59.548 45.833 0.00 0.00 0.00 5.34
6591 9547 3.202906 TCATTATAAGTGGGAAGTGCGC 58.797 45.455 0.00 0.00 0.00 6.09
6592 9548 1.647346 TTATAAGTGGGAAGTGCGCG 58.353 50.000 0.00 0.00 0.00 6.86
6593 9549 0.808453 TATAAGTGGGAAGTGCGCGC 60.808 55.000 27.26 27.26 39.97 6.86
6594 9550 2.796483 ATAAGTGGGAAGTGCGCGCA 62.796 55.000 33.09 33.09 41.91 6.09
6595 9551 2.796483 TAAGTGGGAAGTGCGCGCAT 62.796 55.000 38.62 23.65 41.91 4.73
6596 9552 2.796483 AAGTGGGAAGTGCGCGCATA 62.796 55.000 38.62 13.19 41.91 3.14
6597 9553 2.180204 GTGGGAAGTGCGCGCATAT 61.180 57.895 38.62 28.25 39.51 1.78
6598 9554 2.179547 TGGGAAGTGCGCGCATATG 61.180 57.895 38.62 0.00 0.00 1.78
6599 9555 2.633657 GGAAGTGCGCGCATATGG 59.366 61.111 38.62 0.00 0.00 2.74
6638 9602 3.052954 TGCTTGCATTGCACTGGG 58.947 55.556 11.66 3.51 38.71 4.45
6639 9603 1.833492 TGCTTGCATTGCACTGGGT 60.833 52.632 11.66 0.00 38.71 4.51
6651 9615 0.955428 CACTGGGTGGTCGTTGGATG 60.955 60.000 0.00 0.00 0.00 3.51
6655 9619 1.740296 GGTGGTCGTTGGATGGACG 60.740 63.158 0.00 0.00 41.62 4.79
6822 9799 4.991056 TGATGCTCTTGTTTCTGTCACTAC 59.009 41.667 0.00 0.00 0.00 2.73
6829 9806 9.319143 GCTCTTGTTTCTGTCACTACATAATAT 57.681 33.333 0.00 0.00 34.37 1.28
6867 10060 7.916077 AAATAGTAGTATAACCAGCTGGAGT 57.084 36.000 39.19 26.41 38.94 3.85
6868 10061 9.430399 AAAATAGTAGTATAACCAGCTGGAGTA 57.570 33.333 39.19 27.60 38.94 2.59
6874 10067 9.902684 GTAGTATAACCAGCTGGAGTATAGATA 57.097 37.037 39.19 24.92 38.94 1.98
6941 10155 1.206072 CTGCAAGTGCGAGCAAGTC 59.794 57.895 0.00 0.00 45.83 3.01
6957 10171 6.371809 AGCAAGTCGATGTTTTCTTTTACA 57.628 33.333 0.00 0.00 0.00 2.41
6960 10174 6.855914 GCAAGTCGATGTTTTCTTTTACATGA 59.144 34.615 0.00 0.00 35.24 3.07
6976 10190 3.609853 ACATGACAGCGTAATTGATGGT 58.390 40.909 0.00 0.00 0.00 3.55
6978 10192 3.610040 TGACAGCGTAATTGATGGTCT 57.390 42.857 0.00 0.00 0.00 3.85
6984 10198 3.119849 AGCGTAATTGATGGTCTTGCAAC 60.120 43.478 0.00 0.00 0.00 4.17
6987 10225 4.853196 CGTAATTGATGGTCTTGCAACAAG 59.147 41.667 0.00 0.81 0.00 3.16
6999 10237 4.099881 TCTTGCAACAAGGAAAAATGAGCT 59.900 37.500 7.44 0.00 0.00 4.09
7002 10240 6.100404 TGCAACAAGGAAAAATGAGCTAAT 57.900 33.333 0.00 0.00 0.00 1.73
7005 10243 7.814107 TGCAACAAGGAAAAATGAGCTAATAAG 59.186 33.333 0.00 0.00 0.00 1.73
7006 10244 7.276438 GCAACAAGGAAAAATGAGCTAATAAGG 59.724 37.037 0.00 0.00 0.00 2.69
7007 10245 8.306761 CAACAAGGAAAAATGAGCTAATAAGGT 58.693 33.333 0.00 0.00 35.73 3.50
7008 10246 7.830739 ACAAGGAAAAATGAGCTAATAAGGTG 58.169 34.615 0.00 0.00 32.30 4.00
7009 10247 6.456795 AGGAAAAATGAGCTAATAAGGTGC 57.543 37.500 0.00 0.00 32.30 5.01
7012 10250 5.582689 AAAATGAGCTAATAAGGTGCCAC 57.417 39.130 0.00 0.00 32.30 5.01
7014 10252 1.553248 TGAGCTAATAAGGTGCCACGT 59.447 47.619 0.00 0.00 32.30 4.49
7015 10253 2.761767 TGAGCTAATAAGGTGCCACGTA 59.238 45.455 0.00 0.00 32.30 3.57
7016 10254 3.121544 GAGCTAATAAGGTGCCACGTAC 58.878 50.000 0.00 0.00 32.30 3.67
7017 10255 1.856597 GCTAATAAGGTGCCACGTACG 59.143 52.381 15.01 15.01 0.00 3.67
7018 10256 2.736400 GCTAATAAGGTGCCACGTACGT 60.736 50.000 16.72 16.72 0.00 3.57
7019 10257 3.489059 GCTAATAAGGTGCCACGTACGTA 60.489 47.826 22.34 2.28 0.00 3.57
7020 10258 2.566952 ATAAGGTGCCACGTACGTAC 57.433 50.000 22.34 15.71 0.00 3.67
7021 10259 1.533625 TAAGGTGCCACGTACGTACT 58.466 50.000 22.34 11.25 0.00 2.73
7022 10260 1.533625 AAGGTGCCACGTACGTACTA 58.466 50.000 22.34 7.08 0.00 1.82
7024 10262 0.804989 GGTGCCACGTACGTACTAGT 59.195 55.000 22.34 11.79 0.00 2.57
7025 10263 1.200020 GGTGCCACGTACGTACTAGTT 59.800 52.381 22.34 2.49 0.00 2.24
7027 10265 3.065371 GGTGCCACGTACGTACTAGTTAT 59.935 47.826 22.34 0.00 0.00 1.89
7028 10266 4.438744 GGTGCCACGTACGTACTAGTTATT 60.439 45.833 22.34 0.00 0.00 1.40
7030 10268 5.677178 GTGCCACGTACGTACTAGTTATTAC 59.323 44.000 22.34 4.41 0.00 1.89
7031 10269 5.584649 TGCCACGTACGTACTAGTTATTACT 59.415 40.000 22.34 0.00 38.44 2.24
7033 10271 7.064064 GCCACGTACGTACTAGTTATTACTAC 58.936 42.308 22.34 0.00 35.78 2.73
7038 10276 9.638300 CGTACGTACTAGTTATTACTACAAAGG 57.362 37.037 22.55 0.00 35.78 3.11
7139 10379 4.612264 AACCACTACACTACGAAACCAT 57.388 40.909 0.00 0.00 0.00 3.55
7140 10380 4.184079 ACCACTACACTACGAAACCATC 57.816 45.455 0.00 0.00 0.00 3.51
7149 10389 4.929211 CACTACGAAACCATCTGATGACAA 59.071 41.667 18.92 0.00 0.00 3.18
7150 10390 5.062683 CACTACGAAACCATCTGATGACAAG 59.937 44.000 18.92 4.78 0.00 3.16
7151 10391 4.271696 ACGAAACCATCTGATGACAAGA 57.728 40.909 18.92 0.00 0.00 3.02
7157 10397 6.754702 AACCATCTGATGACAAGATTTCTG 57.245 37.500 18.92 0.45 0.00 3.02
7161 10401 6.598457 CCATCTGATGACAAGATTTCTGTCTT 59.402 38.462 18.92 0.00 38.95 3.01
7162 10402 7.767659 CCATCTGATGACAAGATTTCTGTCTTA 59.232 37.037 18.92 0.00 36.33 2.10
7202 10442 1.028868 AGCAATCAAGCCGAGAAGCC 61.029 55.000 0.00 0.00 34.23 4.35
7222 10513 1.145819 GCAGTGGATCTGAGCTCCC 59.854 63.158 12.15 5.46 46.27 4.30
7224 10515 1.760086 AGTGGATCTGAGCTCCCCG 60.760 63.158 12.15 0.00 31.32 5.73
7225 10516 2.444706 TGGATCTGAGCTCCCCGG 60.445 66.667 12.15 0.00 31.32 5.73
7234 10525 3.223589 GCTCCCCGGCTCTCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
7236 10527 3.347590 TCCCCGGCTCTCTCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
7237 10528 3.151022 CCCCGGCTCTCTCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
7243 10534 2.438614 CTCTCTCTCCACCGGCGA 60.439 66.667 9.30 0.00 0.00 5.54
7244 10535 2.750637 TCTCTCTCCACCGGCGAC 60.751 66.667 9.30 0.00 0.00 5.19
7245 10536 3.062466 CTCTCTCCACCGGCGACA 61.062 66.667 9.30 0.00 0.00 4.35
7246 10537 3.057547 CTCTCTCCACCGGCGACAG 62.058 68.421 9.30 0.00 0.00 3.51
7247 10538 3.374402 CTCTCCACCGGCGACAGT 61.374 66.667 9.30 0.00 0.00 3.55
7249 10540 2.181021 CTCCACCGGCGACAGTAC 59.819 66.667 9.30 0.00 0.00 2.73
7262 10553 1.080230 CAGTACGCAGAGCAGCTGT 60.080 57.895 16.64 0.00 46.62 4.40
7265 10556 0.440371 GTACGCAGAGCAGCTGTTTC 59.560 55.000 16.64 13.41 46.62 2.78
7268 10559 1.874562 GCAGAGCAGCTGTTTCCAG 59.125 57.895 16.64 10.08 46.62 3.86
7280 10571 2.629617 CTGTTTCCAGGAACCAAGCATT 59.370 45.455 0.00 0.00 34.90 3.56
7281 10572 3.826157 CTGTTTCCAGGAACCAAGCATTA 59.174 43.478 0.00 0.00 34.90 1.90
7283 10574 4.651503 TGTTTCCAGGAACCAAGCATTAAA 59.348 37.500 0.00 0.00 0.00 1.52
7284 10575 4.864704 TTCCAGGAACCAAGCATTAAAC 57.135 40.909 0.00 0.00 0.00 2.01
7285 10576 3.838565 TCCAGGAACCAAGCATTAAACA 58.161 40.909 0.00 0.00 0.00 2.83
7286 10577 3.572255 TCCAGGAACCAAGCATTAAACAC 59.428 43.478 0.00 0.00 0.00 3.32
7288 10579 3.252215 CAGGAACCAAGCATTAAACACGA 59.748 43.478 0.00 0.00 0.00 4.35
7289 10580 3.886505 AGGAACCAAGCATTAAACACGAA 59.113 39.130 0.00 0.00 0.00 3.85
7290 10581 3.978855 GGAACCAAGCATTAAACACGAAC 59.021 43.478 0.00 0.00 0.00 3.95
7292 10583 3.219281 ACCAAGCATTAAACACGAACCT 58.781 40.909 0.00 0.00 0.00 3.50
7294 10585 3.252215 CCAAGCATTAAACACGAACCTCA 59.748 43.478 0.00 0.00 0.00 3.86
7295 10586 4.466828 CAAGCATTAAACACGAACCTCAG 58.533 43.478 0.00 0.00 0.00 3.35
7297 10588 2.414161 GCATTAAACACGAACCTCAGCC 60.414 50.000 0.00 0.00 0.00 4.85
7298 10589 2.623878 TTAAACACGAACCTCAGCCA 57.376 45.000 0.00 0.00 0.00 4.75
7299 10590 1.873698 TAAACACGAACCTCAGCCAC 58.126 50.000 0.00 0.00 0.00 5.01
7300 10591 0.107410 AAACACGAACCTCAGCCACA 60.107 50.000 0.00 0.00 0.00 4.17
7324 10660 3.873361 CACATGCTTGTCCTCGTAATCAT 59.127 43.478 1.56 0.00 32.34 2.45
7326 10662 3.885724 TGCTTGTCCTCGTAATCATCA 57.114 42.857 0.00 0.00 0.00 3.07
7364 10705 2.543012 GACACATGATGCAGGATTCTCG 59.457 50.000 0.00 0.00 0.00 4.04
7366 10707 2.543012 CACATGATGCAGGATTCTCGTC 59.457 50.000 0.00 0.00 0.00 4.20
7378 10719 0.531974 TTCTCGTCTGGTTGGTGTGC 60.532 55.000 0.00 0.00 0.00 4.57
7381 10722 2.253758 CGTCTGGTTGGTGTGCTGG 61.254 63.158 0.00 0.00 0.00 4.85
7384 10725 2.043551 TGGTTGGTGTGCTGGCAA 60.044 55.556 0.00 0.00 0.00 4.52
7387 10728 0.319813 GGTTGGTGTGCTGGCAATTC 60.320 55.000 0.00 0.00 0.00 2.17
7390 10731 0.889994 TGGTGTGCTGGCAATTCATC 59.110 50.000 0.00 0.00 0.00 2.92
7391 10732 0.174162 GGTGTGCTGGCAATTCATCC 59.826 55.000 0.00 0.00 0.00 3.51
7392 10733 0.889994 GTGTGCTGGCAATTCATCCA 59.110 50.000 0.00 0.00 0.00 3.41
7393 10734 1.479323 GTGTGCTGGCAATTCATCCAT 59.521 47.619 0.00 0.00 0.00 3.41
7394 10735 2.093869 GTGTGCTGGCAATTCATCCATT 60.094 45.455 0.00 0.00 0.00 3.16
7395 10736 2.166870 TGTGCTGGCAATTCATCCATTC 59.833 45.455 0.00 0.00 0.00 2.67
7396 10737 2.429610 GTGCTGGCAATTCATCCATTCT 59.570 45.455 0.00 0.00 0.00 2.40
7397 10738 3.101437 TGCTGGCAATTCATCCATTCTT 58.899 40.909 0.00 0.00 0.00 2.52
7398 10739 3.516300 TGCTGGCAATTCATCCATTCTTT 59.484 39.130 0.00 0.00 0.00 2.52
7399 10740 4.020039 TGCTGGCAATTCATCCATTCTTTT 60.020 37.500 0.00 0.00 0.00 2.27
7401 10742 5.088680 TGGCAATTCATCCATTCTTTTCC 57.911 39.130 0.00 0.00 0.00 3.13
7402 10743 4.778958 TGGCAATTCATCCATTCTTTTCCT 59.221 37.500 0.00 0.00 0.00 3.36
7403 10744 5.248934 TGGCAATTCATCCATTCTTTTCCTT 59.751 36.000 0.00 0.00 0.00 3.36
7405 10746 6.656270 GGCAATTCATCCATTCTTTTCCTTTT 59.344 34.615 0.00 0.00 0.00 2.27
7406 10747 7.175467 GGCAATTCATCCATTCTTTTCCTTTTT 59.825 33.333 0.00 0.00 0.00 1.94
7426 10767 0.248843 TTTTGCGGGGGCAATTCATC 59.751 50.000 2.00 0.00 0.00 2.92
7430 10771 1.402107 GCGGGGGCAATTCATCCATT 61.402 55.000 0.00 0.00 0.00 3.16
7431 10772 0.675633 CGGGGGCAATTCATCCATTC 59.324 55.000 0.00 0.00 0.00 2.67
7432 10773 1.792115 GGGGGCAATTCATCCATTCA 58.208 50.000 0.00 0.00 0.00 2.57
7433 10774 2.117865 GGGGGCAATTCATCCATTCAA 58.882 47.619 0.00 0.00 0.00 2.69
7434 10775 2.158914 GGGGGCAATTCATCCATTCAAC 60.159 50.000 0.00 0.00 0.00 3.18
7435 10776 2.158914 GGGGCAATTCATCCATTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
7436 10777 2.500910 GGGCAATTCATCCATTCAACCA 59.499 45.455 0.00 0.00 0.00 3.67
7437 10778 3.055240 GGGCAATTCATCCATTCAACCAA 60.055 43.478 0.00 0.00 0.00 3.67
7466 10807 3.181488 TGCACACTTGTTCAAGTTGATGG 60.181 43.478 14.43 6.88 0.00 3.51
7487 10828 2.612212 GACAAGTCTGCTGAAAACGGAA 59.388 45.455 0.00 0.00 0.00 4.30
7528 10874 2.642254 CCAATGCAGCCACACCCAG 61.642 63.158 0.00 0.00 0.00 4.45
7575 10926 2.961424 GCCATAACACCAAGGCACT 58.039 52.632 0.00 0.00 46.26 4.40
7585 10936 5.086104 ACACCAAGGCACTAGTACTAATG 57.914 43.478 6.99 6.99 38.49 1.90
7615 10991 2.177394 TACGAATCAAGCAAGCACCA 57.823 45.000 0.00 0.00 0.00 4.17
7616 10992 0.877071 ACGAATCAAGCAAGCACCAG 59.123 50.000 0.00 0.00 0.00 4.00
7652 11032 2.417107 GGCATCCGAAATGCATCACAAA 60.417 45.455 19.85 0.00 46.21 2.83
7653 11033 3.450578 GCATCCGAAATGCATCACAAAT 58.549 40.909 15.25 0.00 44.00 2.32
7654 11034 3.866910 GCATCCGAAATGCATCACAAATT 59.133 39.130 15.25 0.00 44.00 1.82
7655 11035 4.330620 GCATCCGAAATGCATCACAAATTT 59.669 37.500 15.25 0.00 44.00 1.82
7656 11036 5.501252 GCATCCGAAATGCATCACAAATTTC 60.501 40.000 15.25 0.00 44.00 2.17
7659 11039 4.249181 GAAATGCATCACAAATTTCGCC 57.751 40.909 0.00 0.00 32.41 5.54
7660 11040 2.298411 ATGCATCACAAATTTCGCCC 57.702 45.000 0.00 0.00 0.00 6.13
7661 11041 0.246086 TGCATCACAAATTTCGCCCC 59.754 50.000 0.00 0.00 0.00 5.80
7662 11042 0.532115 GCATCACAAATTTCGCCCCT 59.468 50.000 0.00 0.00 0.00 4.79
7663 11043 1.469767 GCATCACAAATTTCGCCCCTC 60.470 52.381 0.00 0.00 0.00 4.30
7664 11044 1.818060 CATCACAAATTTCGCCCCTCA 59.182 47.619 0.00 0.00 0.00 3.86
7665 11045 2.214376 TCACAAATTTCGCCCCTCAT 57.786 45.000 0.00 0.00 0.00 2.90
7666 11046 2.091541 TCACAAATTTCGCCCCTCATC 58.908 47.619 0.00 0.00 0.00 2.92
7667 11047 1.134946 CACAAATTTCGCCCCTCATCC 59.865 52.381 0.00 0.00 0.00 3.51
7668 11048 1.005924 ACAAATTTCGCCCCTCATCCT 59.994 47.619 0.00 0.00 0.00 3.24
7669 11049 2.241176 ACAAATTTCGCCCCTCATCCTA 59.759 45.455 0.00 0.00 0.00 2.94
7670 11050 2.618709 CAAATTTCGCCCCTCATCCTAC 59.381 50.000 0.00 0.00 0.00 3.18
7671 11051 1.507140 ATTTCGCCCCTCATCCTACA 58.493 50.000 0.00 0.00 0.00 2.74
7672 11052 1.281419 TTTCGCCCCTCATCCTACAA 58.719 50.000 0.00 0.00 0.00 2.41
7673 11053 1.507140 TTCGCCCCTCATCCTACAAT 58.493 50.000 0.00 0.00 0.00 2.71
7674 11054 2.391926 TCGCCCCTCATCCTACAATA 57.608 50.000 0.00 0.00 0.00 1.90
7675 11055 1.968493 TCGCCCCTCATCCTACAATAC 59.032 52.381 0.00 0.00 0.00 1.89
7676 11056 1.971357 CGCCCCTCATCCTACAATACT 59.029 52.381 0.00 0.00 0.00 2.12
7677 11057 2.028930 CGCCCCTCATCCTACAATACTC 60.029 54.545 0.00 0.00 0.00 2.59
7678 11058 3.243724 GCCCCTCATCCTACAATACTCT 58.756 50.000 0.00 0.00 0.00 3.24
7679 11059 3.007398 GCCCCTCATCCTACAATACTCTG 59.993 52.174 0.00 0.00 0.00 3.35
7680 11060 3.007398 CCCCTCATCCTACAATACTCTGC 59.993 52.174 0.00 0.00 0.00 4.26
7681 11061 3.007398 CCCTCATCCTACAATACTCTGCC 59.993 52.174 0.00 0.00 0.00 4.85
7682 11062 3.900601 CCTCATCCTACAATACTCTGCCT 59.099 47.826 0.00 0.00 0.00 4.75
7683 11063 4.021544 CCTCATCCTACAATACTCTGCCTC 60.022 50.000 0.00 0.00 0.00 4.70
7684 11064 4.546674 TCATCCTACAATACTCTGCCTCA 58.453 43.478 0.00 0.00 0.00 3.86
7685 11065 4.962362 TCATCCTACAATACTCTGCCTCAA 59.038 41.667 0.00 0.00 0.00 3.02
7686 11066 5.425217 TCATCCTACAATACTCTGCCTCAAA 59.575 40.000 0.00 0.00 0.00 2.69
7687 11067 5.957771 TCCTACAATACTCTGCCTCAAAT 57.042 39.130 0.00 0.00 0.00 2.32
7688 11068 6.313519 TCCTACAATACTCTGCCTCAAATT 57.686 37.500 0.00 0.00 0.00 1.82
7689 11069 6.721318 TCCTACAATACTCTGCCTCAAATTT 58.279 36.000 0.00 0.00 0.00 1.82
7690 11070 6.599244 TCCTACAATACTCTGCCTCAAATTTG 59.401 38.462 12.15 12.15 0.00 2.32
7691 11071 6.599244 CCTACAATACTCTGCCTCAAATTTGA 59.401 38.462 19.45 19.45 35.57 2.69
7692 11072 6.899393 ACAATACTCTGCCTCAAATTTGAA 57.101 33.333 20.82 6.61 36.64 2.69
7693 11073 7.472334 ACAATACTCTGCCTCAAATTTGAAT 57.528 32.000 20.82 7.06 36.64 2.57
7694 11074 7.899973 ACAATACTCTGCCTCAAATTTGAATT 58.100 30.769 20.82 12.20 36.64 2.17
7695 11075 7.816031 ACAATACTCTGCCTCAAATTTGAATTG 59.184 33.333 23.58 23.58 36.64 2.32
7696 11076 5.796424 ACTCTGCCTCAAATTTGAATTGT 57.204 34.783 20.82 11.25 36.64 2.71
7697 11077 6.165700 ACTCTGCCTCAAATTTGAATTGTT 57.834 33.333 20.82 1.27 36.64 2.83
7698 11078 6.585416 ACTCTGCCTCAAATTTGAATTGTTT 58.415 32.000 20.82 1.85 36.64 2.83
7699 11079 6.480981 ACTCTGCCTCAAATTTGAATTGTTTG 59.519 34.615 20.82 8.12 36.64 2.93
7700 11080 6.347696 TCTGCCTCAAATTTGAATTGTTTGT 58.652 32.000 20.82 0.00 36.64 2.83
7701 11081 7.495901 TCTGCCTCAAATTTGAATTGTTTGTA 58.504 30.769 20.82 4.09 36.64 2.41
7702 11082 7.437862 TCTGCCTCAAATTTGAATTGTTTGTAC 59.562 33.333 20.82 4.16 36.64 2.90
7703 11083 7.044181 TGCCTCAAATTTGAATTGTTTGTACA 58.956 30.769 20.82 6.34 36.64 2.90
7704 11084 7.714377 TGCCTCAAATTTGAATTGTTTGTACAT 59.286 29.630 20.82 0.00 36.64 2.29
7705 11085 8.011106 GCCTCAAATTTGAATTGTTTGTACATG 58.989 33.333 20.82 5.08 36.64 3.21
7706 11086 9.044150 CCTCAAATTTGAATTGTTTGTACATGT 57.956 29.630 20.82 2.69 36.64 3.21
7707 11087 9.852481 CTCAAATTTGAATTGTTTGTACATGTG 57.148 29.630 20.82 0.72 36.64 3.21
7708 11088 8.333908 TCAAATTTGAATTGTTTGTACATGTGC 58.666 29.630 18.45 8.01 35.09 4.57
7709 11089 7.783090 AATTTGAATTGTTTGTACATGTGCA 57.217 28.000 13.02 13.02 33.44 4.57
7710 11090 7.783090 ATTTGAATTGTTTGTACATGTGCAA 57.217 28.000 23.30 23.30 33.44 4.08
7711 11091 7.601073 TTTGAATTGTTTGTACATGTGCAAA 57.399 28.000 30.55 30.55 41.59 3.68
7712 11092 7.783090 TTGAATTGTTTGTACATGTGCAAAT 57.217 28.000 34.48 23.36 44.51 2.32
7713 11093 7.783090 TGAATTGTTTGTACATGTGCAAATT 57.217 28.000 34.48 26.93 44.51 1.82
7714 11094 8.877808 TGAATTGTTTGTACATGTGCAAATTA 57.122 26.923 34.48 26.78 44.51 1.40
7715 11095 8.759641 TGAATTGTTTGTACATGTGCAAATTAC 58.240 29.630 34.48 25.95 44.51 1.89
7716 11096 6.739900 TTGTTTGTACATGTGCAAATTACG 57.260 33.333 34.48 0.00 44.51 3.18
7717 11097 6.061231 TGTTTGTACATGTGCAAATTACGA 57.939 33.333 34.48 16.45 44.51 3.43
7718 11098 6.673106 TGTTTGTACATGTGCAAATTACGAT 58.327 32.000 34.48 0.00 44.51 3.73
7719 11099 7.142021 TGTTTGTACATGTGCAAATTACGATT 58.858 30.769 34.48 0.00 44.51 3.34
7720 11100 8.290325 TGTTTGTACATGTGCAAATTACGATTA 58.710 29.630 34.48 14.57 44.51 1.75
7721 11101 8.785101 GTTTGTACATGTGCAAATTACGATTAG 58.215 33.333 34.48 0.00 44.51 1.73
7722 11102 7.603963 TGTACATGTGCAAATTACGATTAGT 57.396 32.000 14.70 0.00 0.00 2.24
7723 11103 8.705048 TGTACATGTGCAAATTACGATTAGTA 57.295 30.769 14.70 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 2354 9.405587 GCATTGATCTGTAAACTAGAGATAGTC 57.594 37.037 0.00 0.00 38.73 2.59
81 2419 2.629656 CCCTTGCTTGGCCTTCGTG 61.630 63.158 3.32 0.00 0.00 4.35
659 3007 1.073199 GGGAATATCCACCTGCCCG 59.927 63.158 0.00 0.00 38.64 6.13
884 3233 3.083349 TGGATGCGGACTGGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
1332 3681 2.202919 TCGGTGATGATGCGCCAG 60.203 61.111 4.18 0.00 38.35 4.85
1617 3969 5.068460 AGGAGATTATGGTGAAGAGAAGACG 59.932 44.000 0.00 0.00 0.00 4.18
1700 4052 8.947115 ACCAATGAGAAAAATGTACTAGTAAGC 58.053 33.333 3.61 0.00 0.00 3.09
1727 4085 0.465705 TTTTGCCCCACGATTTTGCA 59.534 45.000 0.00 0.00 0.00 4.08
1754 4133 0.039256 CACCGCCAACATTTCAGTGG 60.039 55.000 0.00 0.00 35.96 4.00
1767 4146 1.067071 AGTAAGTAAGAGCACACCGCC 60.067 52.381 0.00 0.00 44.04 6.13
1774 4153 7.549134 CACCAATACATTCAGTAAGTAAGAGCA 59.451 37.037 0.00 0.00 36.05 4.26
1778 4157 6.597672 TGCCACCAATACATTCAGTAAGTAAG 59.402 38.462 0.00 0.00 36.05 2.34
1779 4158 6.477253 TGCCACCAATACATTCAGTAAGTAA 58.523 36.000 0.00 0.00 36.05 2.24
1780 4159 6.056090 TGCCACCAATACATTCAGTAAGTA 57.944 37.500 0.00 0.00 36.05 2.24
1781 4160 4.917385 TGCCACCAATACATTCAGTAAGT 58.083 39.130 0.00 0.00 36.05 2.24
1783 4162 5.589855 CAGATGCCACCAATACATTCAGTAA 59.410 40.000 0.00 0.00 36.05 2.24
1784 4163 5.125356 CAGATGCCACCAATACATTCAGTA 58.875 41.667 0.00 0.00 37.06 2.74
1793 4172 5.469760 CGATCATTTACAGATGCCACCAATA 59.530 40.000 0.00 0.00 0.00 1.90
1800 4179 3.876914 TCAACCGATCATTTACAGATGCC 59.123 43.478 0.00 0.00 0.00 4.40
1801 4180 5.679734 ATCAACCGATCATTTACAGATGC 57.320 39.130 0.00 0.00 0.00 3.91
1809 4188 7.554118 AGTCATGACTTAATCAACCGATCATTT 59.446 33.333 22.89 0.00 41.93 2.32
1810 4189 7.050377 AGTCATGACTTAATCAACCGATCATT 58.950 34.615 22.89 0.00 41.93 2.57
1817 4196 5.874810 TGCAGTAGTCATGACTTAATCAACC 59.125 40.000 32.14 12.24 41.93 3.77
1826 4205 3.555527 ATGCATGCAGTAGTCATGACT 57.444 42.857 30.11 30.11 42.84 3.41
1830 4209 6.528321 ACAGTAATATGCATGCAGTAGTCAT 58.472 36.000 26.69 9.79 0.00 3.06
1831 4210 5.917462 ACAGTAATATGCATGCAGTAGTCA 58.083 37.500 26.69 5.98 0.00 3.41
1840 4219 3.561310 AGACGCCAACAGTAATATGCATG 59.439 43.478 10.16 0.00 0.00 4.06
1843 4383 3.246226 CAGAGACGCCAACAGTAATATGC 59.754 47.826 0.00 0.00 0.00 3.14
1847 4387 1.001974 TGCAGAGACGCCAACAGTAAT 59.998 47.619 0.00 0.00 0.00 1.89
1888 4428 2.489938 TGAATCTGCTACCCACAACC 57.510 50.000 0.00 0.00 0.00 3.77
1933 4473 7.416154 GCTATATAGCTCGACATAGGTAGAG 57.584 44.000 24.63 12.58 46.04 2.43
1969 4509 8.907685 GCGCAGTAATTTTTACTGAACAATTTA 58.092 29.630 24.41 0.00 45.69 1.40
1970 4510 7.436673 TGCGCAGTAATTTTTACTGAACAATTT 59.563 29.630 24.41 0.00 45.69 1.82
1971 4511 6.920758 TGCGCAGTAATTTTTACTGAACAATT 59.079 30.769 24.41 0.00 45.69 2.32
1978 4518 4.419522 ACCTGCGCAGTAATTTTTACTG 57.580 40.909 33.75 17.09 45.62 2.74
1979 4519 4.517453 TCAACCTGCGCAGTAATTTTTACT 59.483 37.500 33.75 2.31 0.00 2.24
1984 4524 2.164219 CCATCAACCTGCGCAGTAATTT 59.836 45.455 33.75 18.69 0.00 1.82
1989 4529 1.672356 GTCCATCAACCTGCGCAGT 60.672 57.895 33.75 20.04 0.00 4.40
2012 4552 0.898320 CGACCATGGAGAAGTGGAGT 59.102 55.000 21.47 0.00 38.86 3.85
2042 4582 6.374333 CAGACCATTTCCCTTCGAATTTCTTA 59.626 38.462 0.00 0.00 0.00 2.10
2048 4588 3.009033 TGACAGACCATTTCCCTTCGAAT 59.991 43.478 0.00 0.00 0.00 3.34
2051 4591 2.350522 CTGACAGACCATTTCCCTTCG 58.649 52.381 0.00 0.00 0.00 3.79
2066 4606 2.528818 CCTTGGACCAGCCCTGACA 61.529 63.158 0.00 0.00 34.97 3.58
2095 4635 6.815089 ACAAACAAGGCATAAAAATGACTGA 58.185 32.000 0.00 0.00 39.42 3.41
2096 4636 8.487176 GTTACAAACAAGGCATAAAAATGACTG 58.513 33.333 0.00 0.00 39.42 3.51
2097 4637 8.200792 TGTTACAAACAAGGCATAAAAATGACT 58.799 29.630 0.00 0.00 42.88 3.41
2111 4651 8.511321 TCACTTAAGGCATATGTTACAAACAAG 58.489 33.333 7.53 1.16 45.86 3.16
2132 4672 2.299326 AAAAGGCTGGATGCTCACTT 57.701 45.000 0.00 0.00 42.39 3.16
2143 4683 3.614870 GCCACTGTGGATTTAAAAGGCTG 60.615 47.826 30.23 0.00 40.96 4.85
2147 4687 6.575162 AGTAAGCCACTGTGGATTTAAAAG 57.425 37.500 32.26 3.22 44.95 2.27
2154 4694 2.162681 GCAAAGTAAGCCACTGTGGAT 58.837 47.619 30.23 22.25 42.13 3.41
2155 4695 1.142870 AGCAAAGTAAGCCACTGTGGA 59.857 47.619 30.23 6.82 42.13 4.02
2159 4699 1.732259 CGGTAGCAAAGTAAGCCACTG 59.268 52.381 0.00 0.00 37.63 3.66
2173 4713 1.523938 CCAGGCCTTAAGCGGTAGC 60.524 63.158 0.00 0.00 45.17 3.58
2174 4714 1.117150 TACCAGGCCTTAAGCGGTAG 58.883 55.000 13.60 0.00 45.17 3.18
2175 4715 1.797320 ATACCAGGCCTTAAGCGGTA 58.203 50.000 18.52 18.52 45.17 4.02
2176 4716 1.692519 CTATACCAGGCCTTAAGCGGT 59.307 52.381 15.52 15.52 45.17 5.68
2178 4718 3.746045 TTCTATACCAGGCCTTAAGCG 57.254 47.619 0.00 0.00 45.17 4.68
2179 4719 8.637196 AAATATTTCTATACCAGGCCTTAAGC 57.363 34.615 0.00 0.00 42.60 3.09
2184 4724 9.660544 AAATCAAAATATTTCTATACCAGGCCT 57.339 29.630 0.00 0.00 0.00 5.19
2236 4776 8.474025 TCTTTTTCTGATGTTCAAAAGCCTAAA 58.526 29.630 6.63 0.00 36.55 1.85
2269 4809 7.013823 ACAGGGGTCATATGAGATTTATGAG 57.986 40.000 5.42 0.00 36.89 2.90
2280 4820 5.482163 AAAAACCAAACAGGGGTCATATG 57.518 39.130 0.00 0.00 43.89 1.78
2356 4902 8.991243 TCTCAAGAAATATTGCTGGAAAATTG 57.009 30.769 1.96 0.00 0.00 2.32
2362 4908 5.698741 TCCTCTCAAGAAATATTGCTGGA 57.301 39.130 0.26 0.26 0.00 3.86
2539 5085 6.311690 GCGCTTCTTTGAACTTACTAGAAGAT 59.688 38.462 12.82 0.00 42.68 2.40
2739 5299 9.982291 CCGTGAAATTTAAGAATCGAAGAATAA 57.018 29.630 0.00 0.00 43.58 1.40
2740 5300 9.373603 TCCGTGAAATTTAAGAATCGAAGAATA 57.626 29.630 0.00 0.00 43.58 1.75
2741 5301 8.263940 TCCGTGAAATTTAAGAATCGAAGAAT 57.736 30.769 0.00 0.00 43.58 2.40
2742 5302 7.661127 TCCGTGAAATTTAAGAATCGAAGAA 57.339 32.000 0.00 0.00 43.58 2.52
2743 5303 7.661127 TTCCGTGAAATTTAAGAATCGAAGA 57.339 32.000 0.00 0.00 45.75 2.87
2744 5304 7.007456 GCTTTCCGTGAAATTTAAGAATCGAAG 59.993 37.037 0.00 0.00 30.85 3.79
2745 5305 6.799925 GCTTTCCGTGAAATTTAAGAATCGAA 59.200 34.615 0.00 0.00 30.85 3.71
2746 5306 6.311723 GCTTTCCGTGAAATTTAAGAATCGA 58.688 36.000 0.00 0.00 30.85 3.59
2747 5307 5.225129 CGCTTTCCGTGAAATTTAAGAATCG 59.775 40.000 0.00 0.00 30.85 3.34
2748 5308 5.003496 GCGCTTTCCGTGAAATTTAAGAATC 59.997 40.000 0.00 0.00 39.71 2.52
2749 5309 4.857037 GCGCTTTCCGTGAAATTTAAGAAT 59.143 37.500 0.00 0.00 39.71 2.40
2750 5310 4.223659 GCGCTTTCCGTGAAATTTAAGAA 58.776 39.130 0.00 0.00 39.71 2.52
2751 5311 3.251245 TGCGCTTTCCGTGAAATTTAAGA 59.749 39.130 9.73 0.00 39.71 2.10
2752 5312 3.360758 GTGCGCTTTCCGTGAAATTTAAG 59.639 43.478 9.73 0.00 39.71 1.85
2771 5331 9.766277 CACAAGAGAAGATAATTTTCTTAGTGC 57.234 33.333 10.64 0.26 36.10 4.40
2904 5464 9.645059 GATAAAACTACTTACTCGGGTAACTTT 57.355 33.333 3.07 2.46 34.61 2.66
2957 5517 7.437748 GTCATAGCTGTGTATTGGAAGTAGAT 58.562 38.462 10.52 0.00 0.00 1.98
3021 5581 4.082190 TCACGAAGAAGAATCCGACTGATT 60.082 41.667 0.00 0.00 46.46 2.57
3034 5594 7.274904 TCGAACCTTGTTATTATCACGAAGAAG 59.725 37.037 0.00 0.00 0.00 2.85
3113 5673 8.145767 ACCCCAAACTTAAAAGCTATTTACAAC 58.854 33.333 0.00 0.00 0.00 3.32
3374 5938 8.202745 ACAAAATTATGTCGAGAAGGATCTTC 57.797 34.615 0.00 0.00 35.54 2.87
3397 5961 6.478344 AGCTCGCAAAACAATAAAATTGAACA 59.522 30.769 6.64 0.00 0.00 3.18
3449 6013 0.114954 TGCAGCCCTCCTGGAAAAAT 59.885 50.000 0.00 0.00 39.11 1.82
3526 6091 3.930336 TCAAAGCTGATCTCACGTTCAT 58.070 40.909 0.00 0.00 0.00 2.57
3595 6160 1.338484 TGTGCTGATCTCCAAGCTGTC 60.338 52.381 4.59 0.00 0.00 3.51
3854 6420 1.374758 CCACAGGCTTCCGTCAGTC 60.375 63.158 0.00 0.00 0.00 3.51
3865 6431 6.403309 GCTTTCTTAATAGTAACACCACAGGC 60.403 42.308 0.00 0.00 0.00 4.85
3930 6578 4.713824 AAAATCTGTCACATGAGCATGG 57.286 40.909 14.35 4.45 42.91 3.66
3986 6634 2.755650 CCTGTGACTGTAACTGGTGTC 58.244 52.381 11.98 0.00 33.30 3.67
4288 6948 7.734538 ACTGTTTTTATTAAATTCGCCATCG 57.265 32.000 0.00 0.00 0.00 3.84
4336 6996 4.082625 ACAATGATGCCACACAAGTACATG 60.083 41.667 0.00 0.00 0.00 3.21
4396 7056 6.509418 TTATTTTCCCCAAAGATGAGAACG 57.491 37.500 0.00 0.00 0.00 3.95
4463 7124 6.480981 GGATTGCACATAAATTTGATGGAAGG 59.519 38.462 0.00 0.00 0.00 3.46
4531 7192 1.353103 GGCGCATCCGAGTGAATTG 59.647 57.895 10.83 0.00 36.29 2.32
4558 7219 6.481976 TGTGTAACACAAAGGAACAGTATCTG 59.518 38.462 0.00 0.00 45.67 2.90
4576 7237 3.306818 GACTGTCGTCCTTCTGTGTAAC 58.693 50.000 0.00 0.00 33.98 2.50
4592 7253 0.390866 CAGATGCTTGCTCCGACTGT 60.391 55.000 0.00 0.00 0.00 3.55
4596 7257 0.894835 TGTACAGATGCTTGCTCCGA 59.105 50.000 0.00 0.00 0.00 4.55
4627 7288 1.079750 GGTCTCTGCCTCGTGGAAC 60.080 63.158 7.92 0.00 34.57 3.62
4634 7295 2.155279 GGAACTTTTGGTCTCTGCCTC 58.845 52.381 0.00 0.00 36.15 4.70
4640 7301 1.202940 AGGCCAGGAACTTTTGGTCTC 60.203 52.381 5.01 0.00 46.05 3.36
4644 7305 1.114722 TGCAGGCCAGGAACTTTTGG 61.115 55.000 5.01 0.00 34.60 3.28
4688 7349 7.221067 TGTTTTGCAATAAAACTACCAAGTTCG 59.779 33.333 12.41 0.00 45.37 3.95
4754 7415 5.137551 TCGATATCAACTCTCCCATGTGTA 58.862 41.667 3.12 0.00 0.00 2.90
4763 7424 4.846779 AGCCTTCTCGATATCAACTCTC 57.153 45.455 3.12 0.00 0.00 3.20
4775 7436 3.309388 CATCCGTGTTATAGCCTTCTCG 58.691 50.000 0.00 0.00 0.00 4.04
4917 7580 4.985538 ACTACAAAGCAGAGGGATGAAAA 58.014 39.130 0.00 0.00 0.00 2.29
4920 7586 4.402793 GTCTACTACAAAGCAGAGGGATGA 59.597 45.833 0.00 0.00 0.00 2.92
4921 7587 4.688021 GTCTACTACAAAGCAGAGGGATG 58.312 47.826 0.00 0.00 0.00 3.51
4922 7588 3.381908 CGTCTACTACAAAGCAGAGGGAT 59.618 47.826 0.00 0.00 30.51 3.85
4941 7607 3.570926 TGTATGACAAGACTGGACGTC 57.429 47.619 7.13 7.13 43.17 4.34
4952 7618 2.027285 TGCTAGCAGCCTTGTATGACAA 60.027 45.455 14.93 0.00 41.51 3.18
4953 7619 1.554617 TGCTAGCAGCCTTGTATGACA 59.445 47.619 14.93 0.00 41.51 3.58
4954 7620 2.315925 TGCTAGCAGCCTTGTATGAC 57.684 50.000 14.93 0.00 41.51 3.06
4955 7621 2.435437 TGATGCTAGCAGCCTTGTATGA 59.565 45.455 28.79 5.88 41.51 2.15
5007 7675 7.823745 AAATTTAGCTTCTTCAGTTCCAAGA 57.176 32.000 0.00 0.00 0.00 3.02
5008 7676 8.877808 AAAAATTTAGCTTCTTCAGTTCCAAG 57.122 30.769 0.00 0.00 0.00 3.61
5054 7722 9.733556 TCCTTCACTAGCAATTCAAAGTTATTA 57.266 29.630 0.00 0.00 0.00 0.98
5075 7744 1.202188 GCGCTTGCTACCATTTCCTTC 60.202 52.381 0.00 0.00 35.07 3.46
5077 7746 2.482326 GCGCTTGCTACCATTTCCT 58.518 52.632 0.00 0.00 35.07 3.36
5141 7819 6.110543 ACCGTAAACTGAACAAGTAACAAC 57.889 37.500 0.00 0.00 38.56 3.32
5144 7822 5.971895 TGACCGTAAACTGAACAAGTAAC 57.028 39.130 0.00 0.00 38.56 2.50
5157 7835 9.932207 TTCTCAGAGTTAAATTATGACCGTAAA 57.068 29.630 0.00 0.00 0.00 2.01
5161 7839 7.519008 GCCATTCTCAGAGTTAAATTATGACCG 60.519 40.741 0.00 0.00 0.00 4.79
5169 7847 5.954150 ACAATGGCCATTCTCAGAGTTAAAT 59.046 36.000 28.42 0.00 0.00 1.40
5176 7861 1.407299 CGGACAATGGCCATTCTCAGA 60.407 52.381 28.30 0.00 0.00 3.27
5186 7871 1.442526 CCTGATCTGCGGACAATGGC 61.443 60.000 0.00 0.00 0.00 4.40
5195 7880 1.685517 TCTGGAATCTCCTGATCTGCG 59.314 52.381 0.00 0.00 39.21 5.18
5253 7938 3.849527 ACCTGCCCTCTCAAAAGATTTT 58.150 40.909 0.00 0.00 0.00 1.82
5256 7941 2.239907 GGTACCTGCCCTCTCAAAAGAT 59.760 50.000 4.06 0.00 0.00 2.40
5277 7962 6.727824 CTTGGTCCAAGTACAAGTAATCAG 57.272 41.667 21.76 0.00 36.79 2.90
5300 7985 6.937436 AGAACGGTCAATCCCATATTTAAC 57.063 37.500 1.87 0.00 0.00 2.01
5303 7988 5.755849 AGAAGAACGGTCAATCCCATATTT 58.244 37.500 1.87 0.00 0.00 1.40
5305 7990 5.126067 CAAGAAGAACGGTCAATCCCATAT 58.874 41.667 1.87 0.00 0.00 1.78
5306 7991 4.513442 CAAGAAGAACGGTCAATCCCATA 58.487 43.478 1.87 0.00 0.00 2.74
5312 7997 5.003804 ACATTAGCAAGAAGAACGGTCAAT 58.996 37.500 1.87 0.00 0.00 2.57
5319 8004 4.681483 GCAACCAACATTAGCAAGAAGAAC 59.319 41.667 0.00 0.00 0.00 3.01
5324 8009 2.030007 GCTGCAACCAACATTAGCAAGA 60.030 45.455 0.00 0.00 34.45 3.02
5328 8013 0.456653 CGGCTGCAACCAACATTAGC 60.457 55.000 6.99 0.00 0.00 3.09
5338 8023 0.676782 AATGGAGTACCGGCTGCAAC 60.677 55.000 0.00 0.00 40.11 4.17
5346 8031 1.271163 ACACACCCAAATGGAGTACCG 60.271 52.381 0.00 0.00 35.52 4.02
5352 8037 5.882040 TGACTAATTACACACCCAAATGGA 58.118 37.500 0.00 0.00 37.39 3.41
5383 8070 5.049405 CCGCATAGAACTAGGCCATAAAAAG 60.049 44.000 5.01 0.00 39.43 2.27
5397 8084 2.202566 GGCTACTTGACCGCATAGAAC 58.797 52.381 0.00 0.00 0.00 3.01
5400 8087 2.138320 CATGGCTACTTGACCGCATAG 58.862 52.381 0.00 0.00 0.00 2.23
5404 8091 1.819632 CCCATGGCTACTTGACCGC 60.820 63.158 6.09 0.00 0.00 5.68
5405 8092 1.819632 GCCCATGGCTACTTGACCG 60.820 63.158 6.09 0.00 46.69 4.79
5439 8126 6.408092 CCATGGCTATTTGGAGTACTAACAGA 60.408 42.308 0.00 0.00 34.81 3.41
5442 8129 4.515567 GCCATGGCTATTTGGAGTACTAAC 59.484 45.833 29.98 0.00 38.26 2.34
5443 8130 4.445735 GGCCATGGCTATTTGGAGTACTAA 60.446 45.833 34.70 0.00 41.60 2.24
5445 8132 2.158608 GGCCATGGCTATTTGGAGTACT 60.159 50.000 34.70 0.00 41.60 2.73
5446 8133 2.230660 GGCCATGGCTATTTGGAGTAC 58.769 52.381 34.70 10.96 41.60 2.73
5447 8134 1.849692 TGGCCATGGCTATTTGGAGTA 59.150 47.619 34.70 7.10 41.60 2.59
5448 8135 0.630673 TGGCCATGGCTATTTGGAGT 59.369 50.000 34.70 0.00 41.60 3.85
5449 8136 1.779221 TTGGCCATGGCTATTTGGAG 58.221 50.000 34.70 0.00 41.60 3.86
5451 8138 2.101917 CTCTTTGGCCATGGCTATTTGG 59.898 50.000 34.70 19.51 41.60 3.28
5452 8139 2.762327 ACTCTTTGGCCATGGCTATTTG 59.238 45.455 34.70 20.90 41.60 2.32
5453 8140 3.105959 ACTCTTTGGCCATGGCTATTT 57.894 42.857 34.70 11.30 41.60 1.40
5454 8141 2.834638 ACTCTTTGGCCATGGCTATT 57.165 45.000 34.70 10.76 41.60 1.73
5455 8142 4.147321 CAATACTCTTTGGCCATGGCTAT 58.853 43.478 34.70 19.81 41.60 2.97
5456 8143 3.554934 CAATACTCTTTGGCCATGGCTA 58.445 45.455 34.70 28.21 41.60 3.93
5457 8144 2.381911 CAATACTCTTTGGCCATGGCT 58.618 47.619 34.70 16.74 41.60 4.75
5458 8145 1.202452 GCAATACTCTTTGGCCATGGC 60.202 52.381 29.47 29.47 41.06 4.40
5459 8146 2.381911 AGCAATACTCTTTGGCCATGG 58.618 47.619 6.09 7.63 0.00 3.66
5460 8147 5.357878 TCTTAAGCAATACTCTTTGGCCATG 59.642 40.000 6.09 2.48 0.00 3.66
5461 8148 5.509498 TCTTAAGCAATACTCTTTGGCCAT 58.491 37.500 6.09 0.00 0.00 4.40
5462 8149 4.917385 TCTTAAGCAATACTCTTTGGCCA 58.083 39.130 0.00 0.00 0.00 5.36
5463 8150 6.017026 GGTATCTTAAGCAATACTCTTTGGCC 60.017 42.308 11.89 0.00 0.00 5.36
5464 8151 6.768381 AGGTATCTTAAGCAATACTCTTTGGC 59.232 38.462 11.89 0.00 0.00 4.52
5465 8152 9.482627 CTAGGTATCTTAAGCAATACTCTTTGG 57.517 37.037 11.89 0.00 0.00 3.28
5466 8153 9.482627 CCTAGGTATCTTAAGCAATACTCTTTG 57.517 37.037 0.00 6.49 0.00 2.77
5467 8154 9.435570 TCCTAGGTATCTTAAGCAATACTCTTT 57.564 33.333 9.08 2.66 0.00 2.52
5468 8155 8.862085 GTCCTAGGTATCTTAAGCAATACTCTT 58.138 37.037 9.08 4.33 0.00 2.85
5469 8156 7.452189 GGTCCTAGGTATCTTAAGCAATACTCT 59.548 40.741 9.08 10.16 0.00 3.24
5470 8157 7.309928 GGGTCCTAGGTATCTTAAGCAATACTC 60.310 44.444 9.08 0.00 0.00 2.59
5474 8161 4.597940 GGGGTCCTAGGTATCTTAAGCAAT 59.402 45.833 9.08 0.00 0.00 3.56
5804 8492 5.922544 CAGAAATTTGGTGCTAAAAGGTGAG 59.077 40.000 0.00 0.00 0.00 3.51
5809 8497 8.871686 AAACTACAGAAATTTGGTGCTAAAAG 57.128 30.769 0.00 0.00 0.00 2.27
5810 8498 9.308318 GAAAACTACAGAAATTTGGTGCTAAAA 57.692 29.630 0.00 0.00 0.00 1.52
5813 8501 7.817418 AGAAAACTACAGAAATTTGGTGCTA 57.183 32.000 0.00 0.00 0.00 3.49
5854 8649 4.452114 TGATCATGGACTCAAAAACGTCAG 59.548 41.667 0.00 0.00 31.88 3.51
5865 8660 6.183360 TGCATCAATTTCTTGATCATGGACTC 60.183 38.462 8.60 0.00 46.83 3.36
5977 8790 0.321919 ACTGGTGGCACTAGCATGTG 60.322 55.000 28.22 7.47 44.61 3.21
5978 8791 0.036010 GACTGGTGGCACTAGCATGT 60.036 55.000 28.22 11.84 44.61 3.21
6007 8820 5.046304 CCATGGTGGACCGATAGAGAATTAT 60.046 44.000 2.57 0.00 40.96 1.28
6016 8829 3.236391 GGCCATGGTGGACCGATA 58.764 61.111 14.67 0.00 40.64 2.92
6043 8865 0.531200 GAGTGTGGAGACCGTTAGGG 59.469 60.000 0.00 0.00 43.47 3.53
6219 9045 4.555709 TCGGGTGCTTGGTTGCGT 62.556 61.111 0.00 0.00 35.36 5.24
6383 9239 9.888878 GTACCTCACCTTTTATTTTTCTGTTAC 57.111 33.333 0.00 0.00 0.00 2.50
6385 9241 8.630037 CAGTACCTCACCTTTTATTTTTCTGTT 58.370 33.333 0.00 0.00 0.00 3.16
6386 9242 7.230712 CCAGTACCTCACCTTTTATTTTTCTGT 59.769 37.037 0.00 0.00 0.00 3.41
6387 9243 7.593825 CCAGTACCTCACCTTTTATTTTTCTG 58.406 38.462 0.00 0.00 0.00 3.02
6388 9244 6.208797 GCCAGTACCTCACCTTTTATTTTTCT 59.791 38.462 0.00 0.00 0.00 2.52
6390 9246 5.245301 GGCCAGTACCTCACCTTTTATTTTT 59.755 40.000 0.00 0.00 0.00 1.94
6392 9248 4.341487 GGCCAGTACCTCACCTTTTATTT 58.659 43.478 0.00 0.00 0.00 1.40
6394 9250 2.093128 CGGCCAGTACCTCACCTTTTAT 60.093 50.000 2.24 0.00 0.00 1.40
6395 9251 1.276989 CGGCCAGTACCTCACCTTTTA 59.723 52.381 2.24 0.00 0.00 1.52
6403 9260 0.250597 AAAACCACGGCCAGTACCTC 60.251 55.000 2.24 0.00 0.00 3.85
6405 9262 1.239296 GGAAAACCACGGCCAGTACC 61.239 60.000 2.24 0.00 0.00 3.34
6407 9264 0.250553 CAGGAAAACCACGGCCAGTA 60.251 55.000 2.24 0.00 0.00 2.74
6414 9283 2.639970 TCCATGCAGGAAAACCACG 58.360 52.632 0.00 0.00 45.65 4.94
6438 9307 4.451435 ACGGGAGAAAAAGAAAACTCGATC 59.549 41.667 0.00 0.00 0.00 3.69
6439 9308 4.386711 ACGGGAGAAAAAGAAAACTCGAT 58.613 39.130 0.00 0.00 0.00 3.59
6440 9309 3.800531 ACGGGAGAAAAAGAAAACTCGA 58.199 40.909 0.00 0.00 0.00 4.04
6443 9312 4.524053 ACAGACGGGAGAAAAAGAAAACT 58.476 39.130 0.00 0.00 0.00 2.66
6444 9313 4.334481 TGACAGACGGGAGAAAAAGAAAAC 59.666 41.667 0.00 0.00 0.00 2.43
6447 9316 3.830744 TGACAGACGGGAGAAAAAGAA 57.169 42.857 0.00 0.00 0.00 2.52
6448 9317 3.830744 TTGACAGACGGGAGAAAAAGA 57.169 42.857 0.00 0.00 0.00 2.52
6449 9318 3.304057 GCTTTGACAGACGGGAGAAAAAG 60.304 47.826 0.00 0.00 0.00 2.27
6450 9319 2.616842 GCTTTGACAGACGGGAGAAAAA 59.383 45.455 0.00 0.00 0.00 1.94
6451 9320 2.158813 AGCTTTGACAGACGGGAGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
6454 9323 0.603569 GAGCTTTGACAGACGGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
6455 9324 0.605589 AGAGCTTTGACAGACGGGAG 59.394 55.000 0.00 0.00 0.00 4.30
6456 9325 1.819288 CTAGAGCTTTGACAGACGGGA 59.181 52.381 0.00 0.00 0.00 5.14
6458 9327 3.246619 GTTCTAGAGCTTTGACAGACGG 58.753 50.000 0.00 0.00 0.00 4.79
6480 9411 3.546714 AACCCGGCAGAAACCTCCG 62.547 63.158 0.00 0.00 42.58 4.63
6507 9455 0.984995 ACAGACTTCCCAAGCCCTAC 59.015 55.000 0.00 0.00 0.00 3.18
6509 9457 0.984995 GTACAGACTTCCCAAGCCCT 59.015 55.000 0.00 0.00 0.00 5.19
6510 9458 0.690762 TGTACAGACTTCCCAAGCCC 59.309 55.000 0.00 0.00 0.00 5.19
6512 9460 2.808543 CAGTTGTACAGACTTCCCAAGC 59.191 50.000 7.65 0.00 0.00 4.01
6520 9468 3.243907 GGAAGCTGACAGTTGTACAGACT 60.244 47.826 3.99 0.29 34.07 3.24
6525 9473 2.288273 ACGAGGAAGCTGACAGTTGTAC 60.288 50.000 3.99 0.00 0.00 2.90
6528 9476 1.423395 GACGAGGAAGCTGACAGTTG 58.577 55.000 3.99 0.00 0.00 3.16
6550 9501 7.898014 AATGATCCCCTTTTACCAATTCTAC 57.102 36.000 0.00 0.00 0.00 2.59
6568 9524 4.083802 GCGCACTTCCCACTTATAATGATC 60.084 45.833 0.30 0.00 0.00 2.92
6576 9532 2.740826 GCGCGCACTTCCCACTTA 60.741 61.111 29.10 0.00 0.00 2.24
6590 9546 1.302033 CCTCTCCCACCATATGCGC 60.302 63.158 0.00 0.00 0.00 6.09
6591 9547 0.034059 GTCCTCTCCCACCATATGCG 59.966 60.000 0.00 0.00 0.00 4.73
6592 9548 1.428869 AGTCCTCTCCCACCATATGC 58.571 55.000 0.00 0.00 0.00 3.14
6593 9549 3.200825 ACAAAGTCCTCTCCCACCATATG 59.799 47.826 0.00 0.00 0.00 1.78
6594 9550 3.464828 ACAAAGTCCTCTCCCACCATAT 58.535 45.455 0.00 0.00 0.00 1.78
6595 9551 2.915869 ACAAAGTCCTCTCCCACCATA 58.084 47.619 0.00 0.00 0.00 2.74
6596 9552 1.747444 ACAAAGTCCTCTCCCACCAT 58.253 50.000 0.00 0.00 0.00 3.55
6597 9553 1.518367 AACAAAGTCCTCTCCCACCA 58.482 50.000 0.00 0.00 0.00 4.17
6598 9554 2.158667 TGAAACAAAGTCCTCTCCCACC 60.159 50.000 0.00 0.00 0.00 4.61
6599 9555 3.142174 CTGAAACAAAGTCCTCTCCCAC 58.858 50.000 0.00 0.00 0.00 4.61
6638 9602 1.740296 CCGTCCATCCAACGACCAC 60.740 63.158 0.00 0.00 42.62 4.16
6639 9603 1.909287 TCCGTCCATCCAACGACCA 60.909 57.895 0.00 0.00 42.62 4.02
6651 9615 0.591659 GTGCTTGAAAAGGTCCGTCC 59.408 55.000 0.00 0.00 46.35 4.79
6655 9619 1.021968 ACGTGTGCTTGAAAAGGTCC 58.978 50.000 0.00 0.00 46.35 4.46
6698 9662 2.038659 AGGAAGATCTAGAGCACAGGC 58.961 52.381 11.20 0.00 41.61 4.85
6699 9663 4.442753 GGAAAGGAAGATCTAGAGCACAGG 60.443 50.000 11.20 0.00 0.00 4.00
6780 9757 3.751518 TCATCATCATCATCAGCCCAAG 58.248 45.455 0.00 0.00 0.00 3.61
6783 9760 2.423892 GCATCATCATCATCATCAGCCC 59.576 50.000 0.00 0.00 0.00 5.19
6789 9766 6.773200 AGAAACAAGAGCATCATCATCATCAT 59.227 34.615 0.00 0.00 37.82 2.45
6790 9767 6.038271 CAGAAACAAGAGCATCATCATCATCA 59.962 38.462 0.00 0.00 37.82 3.07
6791 9768 6.038382 ACAGAAACAAGAGCATCATCATCATC 59.962 38.462 0.00 0.00 37.82 2.92
6792 9769 5.886474 ACAGAAACAAGAGCATCATCATCAT 59.114 36.000 0.00 0.00 37.82 2.45
6841 9818 9.430399 ACTCCAGCTGGTTATACTACTATTTTA 57.570 33.333 31.58 5.66 36.34 1.52
6858 10051 9.237187 TCTTATCTTGTATCTATACTCCAGCTG 57.763 37.037 6.78 6.78 34.41 4.24
6867 10060 7.065923 ACGCTCGCATCTTATCTTGTATCTATA 59.934 37.037 0.00 0.00 0.00 1.31
6868 10061 6.127869 ACGCTCGCATCTTATCTTGTATCTAT 60.128 38.462 0.00 0.00 0.00 1.98
6874 10067 2.196749 CACGCTCGCATCTTATCTTGT 58.803 47.619 0.00 0.00 0.00 3.16
6924 10125 2.597713 CGACTTGCTCGCACTTGCA 61.598 57.895 1.48 0.00 42.21 4.08
6927 10128 0.319900 ACATCGACTTGCTCGCACTT 60.320 50.000 0.00 0.00 42.62 3.16
6928 10129 0.319900 AACATCGACTTGCTCGCACT 60.320 50.000 0.00 0.00 42.62 4.40
6929 10130 0.512952 AAACATCGACTTGCTCGCAC 59.487 50.000 0.00 0.00 42.62 5.34
6941 10155 5.281376 CGCTGTCATGTAAAAGAAAACATCG 59.719 40.000 0.00 0.00 34.12 3.84
6946 10160 8.346300 TCAATTACGCTGTCATGTAAAAGAAAA 58.654 29.630 0.00 0.00 34.52 2.29
6955 10169 3.609853 ACCATCAATTACGCTGTCATGT 58.390 40.909 0.00 0.00 0.00 3.21
6957 10171 4.142609 AGACCATCAATTACGCTGTCAT 57.857 40.909 0.00 0.00 0.00 3.06
6960 10174 2.420022 GCAAGACCATCAATTACGCTGT 59.580 45.455 0.00 0.00 0.00 4.40
6976 10190 4.099881 AGCTCATTTTTCCTTGTTGCAAGA 59.900 37.500 0.00 0.00 0.00 3.02
6978 10192 4.405116 AGCTCATTTTTCCTTGTTGCAA 57.595 36.364 0.00 0.00 0.00 4.08
6984 10198 6.753744 GCACCTTATTAGCTCATTTTTCCTTG 59.246 38.462 0.00 0.00 0.00 3.61
6987 10225 5.127031 TGGCACCTTATTAGCTCATTTTTCC 59.873 40.000 0.00 0.00 0.00 3.13
6999 10237 3.694072 AGTACGTACGTGGCACCTTATTA 59.306 43.478 30.25 2.87 0.00 0.98
7002 10240 1.533625 AGTACGTACGTGGCACCTTA 58.466 50.000 30.25 5.06 0.00 2.69
7005 10243 0.804989 ACTAGTACGTACGTGGCACC 59.195 55.000 30.25 12.47 0.00 5.01
7006 10244 2.619013 AACTAGTACGTACGTGGCAC 57.381 50.000 30.25 20.14 0.00 5.01
7007 10245 4.963276 AATAACTAGTACGTACGTGGCA 57.037 40.909 30.25 13.46 0.00 4.92
7008 10246 6.049263 AGTAATAACTAGTACGTACGTGGC 57.951 41.667 30.25 21.37 32.84 5.01
7009 10247 8.126871 TGTAGTAATAACTAGTACGTACGTGG 57.873 38.462 30.25 18.32 38.89 4.94
7012 10250 9.638300 CCTTTGTAGTAATAACTAGTACGTACG 57.362 37.037 19.49 15.01 38.89 3.67
7048 10286 7.222031 GCGAGACCTCTTTTGTTTTTACATTTT 59.778 33.333 0.00 0.00 0.00 1.82
7050 10288 6.206498 GCGAGACCTCTTTTGTTTTTACATT 58.794 36.000 0.00 0.00 0.00 2.71
7054 10292 3.249080 CGGCGAGACCTCTTTTGTTTTTA 59.751 43.478 0.00 0.00 35.61 1.52
7057 10295 1.226746 CGGCGAGACCTCTTTTGTTT 58.773 50.000 0.00 0.00 35.61 2.83
7059 10297 1.004918 CCGGCGAGACCTCTTTTGT 60.005 57.895 9.30 0.00 35.61 2.83
7060 10298 1.741770 CCCGGCGAGACCTCTTTTG 60.742 63.158 9.30 0.00 35.61 2.44
7139 10379 7.984050 GGATAAGACAGAAATCTTGTCATCAGA 59.016 37.037 12.44 0.00 44.41 3.27
7140 10380 7.986320 AGGATAAGACAGAAATCTTGTCATCAG 59.014 37.037 12.44 0.00 44.41 2.90
7169 10409 6.348498 GCTTGATTGCTGGGGTTTAATTAAT 58.652 36.000 0.00 0.00 0.00 1.40
7171 10411 4.161377 GGCTTGATTGCTGGGGTTTAATTA 59.839 41.667 0.00 0.00 0.00 1.40
7174 10414 1.899142 GGCTTGATTGCTGGGGTTTAA 59.101 47.619 0.00 0.00 0.00 1.52
7182 10422 0.098376 GCTTCTCGGCTTGATTGCTG 59.902 55.000 0.00 0.00 40.46 4.41
7202 10442 1.227205 GAGCTCAGATCCACTGCCG 60.227 63.158 9.40 0.00 45.38 5.69
7204 10444 1.145819 GGGAGCTCAGATCCACTGC 59.854 63.158 17.19 0.00 45.38 4.40
7222 10513 3.522731 CGGTGGAGAGAGAGCCGG 61.523 72.222 0.00 0.00 38.86 6.13
7224 10515 3.844090 GCCGGTGGAGAGAGAGCC 61.844 72.222 1.90 0.00 0.00 4.70
7225 10516 4.200283 CGCCGGTGGAGAGAGAGC 62.200 72.222 7.26 0.00 0.00 4.09
7228 10519 3.057547 CTGTCGCCGGTGGAGAGAG 62.058 68.421 16.49 8.03 36.70 3.20
7231 10522 2.034532 TACTGTCGCCGGTGGAGA 59.965 61.111 16.49 4.70 0.00 3.71
7243 10534 1.080230 CAGCTGCTCTGCGTACTGT 60.080 57.895 0.00 0.00 35.78 3.55
7244 10535 0.668706 AACAGCTGCTCTGCGTACTG 60.669 55.000 15.27 0.00 46.76 2.74
7245 10536 0.034059 AAACAGCTGCTCTGCGTACT 59.966 50.000 15.27 0.00 46.76 2.73
7246 10537 0.440371 GAAACAGCTGCTCTGCGTAC 59.560 55.000 15.27 0.00 46.76 3.67
7247 10538 0.670546 GGAAACAGCTGCTCTGCGTA 60.671 55.000 15.27 0.00 46.76 4.42
7249 10540 1.962822 TGGAAACAGCTGCTCTGCG 60.963 57.895 15.27 0.00 46.76 5.18
7262 10553 4.651503 TGTTTAATGCTTGGTTCCTGGAAA 59.348 37.500 11.40 0.00 0.00 3.13
7265 10556 3.611530 CGTGTTTAATGCTTGGTTCCTGG 60.612 47.826 0.00 0.00 0.00 4.45
7268 10559 3.907894 TCGTGTTTAATGCTTGGTTCC 57.092 42.857 0.00 0.00 0.00 3.62
7280 10571 1.139256 TGTGGCTGAGGTTCGTGTTTA 59.861 47.619 0.00 0.00 0.00 2.01
7281 10572 0.107410 TGTGGCTGAGGTTCGTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
7283 10574 0.320771 GATGTGGCTGAGGTTCGTGT 60.321 55.000 0.00 0.00 0.00 4.49
7284 10575 0.320683 TGATGTGGCTGAGGTTCGTG 60.321 55.000 0.00 0.00 0.00 4.35
7285 10576 0.320771 GTGATGTGGCTGAGGTTCGT 60.321 55.000 0.00 0.00 0.00 3.85
7286 10577 0.320683 TGTGATGTGGCTGAGGTTCG 60.321 55.000 0.00 0.00 0.00 3.95
7288 10579 1.830279 CATGTGATGTGGCTGAGGTT 58.170 50.000 0.00 0.00 0.00 3.50
7289 10580 0.679002 GCATGTGATGTGGCTGAGGT 60.679 55.000 0.00 0.00 0.00 3.85
7290 10581 0.393944 AGCATGTGATGTGGCTGAGG 60.394 55.000 0.00 0.00 34.83 3.86
7292 10583 1.170442 CAAGCATGTGATGTGGCTGA 58.830 50.000 0.00 0.00 36.58 4.26
7294 10585 1.171308 GACAAGCATGTGATGTGGCT 58.829 50.000 0.00 0.00 40.74 4.75
7295 10586 0.171903 GGACAAGCATGTGATGTGGC 59.828 55.000 0.00 0.00 40.74 5.01
7297 10588 1.395954 CGAGGACAAGCATGTGATGTG 59.604 52.381 0.00 0.00 40.74 3.21
7298 10589 1.002430 ACGAGGACAAGCATGTGATGT 59.998 47.619 0.00 0.00 40.74 3.06
7299 10590 1.730501 ACGAGGACAAGCATGTGATG 58.269 50.000 0.00 0.00 40.74 3.07
7300 10591 3.610040 TTACGAGGACAAGCATGTGAT 57.390 42.857 0.00 0.00 40.74 3.06
7324 10660 4.811024 GTGTCACTCTTTGTCATCACTTGA 59.189 41.667 0.00 0.00 0.00 3.02
7326 10662 4.769688 TGTGTCACTCTTTGTCATCACTT 58.230 39.130 4.27 0.00 0.00 3.16
7339 10675 2.391616 TCCTGCATCATGTGTCACTC 57.608 50.000 4.27 0.00 0.00 3.51
7364 10705 2.555547 GCCAGCACACCAACCAGAC 61.556 63.158 0.00 0.00 0.00 3.51
7366 10707 1.466025 ATTGCCAGCACACCAACCAG 61.466 55.000 0.00 0.00 0.00 4.00
7378 10719 5.105064 AGGAAAAGAATGGATGAATTGCCAG 60.105 40.000 0.00 0.00 37.64 4.85
7381 10722 7.677454 AAAAGGAAAAGAATGGATGAATTGC 57.323 32.000 0.00 0.00 0.00 3.56
7410 10751 2.441901 GGATGAATTGCCCCCGCA 60.442 61.111 0.00 0.00 45.49 5.69
7411 10752 1.402107 AATGGATGAATTGCCCCCGC 61.402 55.000 0.00 0.00 0.00 6.13
7412 10753 0.675633 GAATGGATGAATTGCCCCCG 59.324 55.000 0.00 0.00 0.00 5.73
7413 10754 1.792115 TGAATGGATGAATTGCCCCC 58.208 50.000 0.00 0.00 0.00 5.40
7414 10755 2.158914 GGTTGAATGGATGAATTGCCCC 60.159 50.000 0.00 0.00 0.00 5.80
7426 10767 2.158986 TGCAAGTTGGTTGGTTGAATGG 60.159 45.455 4.75 0.00 36.56 3.16
7430 10771 1.203523 GTGTGCAAGTTGGTTGGTTGA 59.796 47.619 4.75 0.00 36.56 3.18
7431 10772 1.204467 AGTGTGCAAGTTGGTTGGTTG 59.796 47.619 4.75 0.00 36.56 3.77
7432 10773 1.555967 AGTGTGCAAGTTGGTTGGTT 58.444 45.000 4.75 0.00 36.56 3.67
7433 10774 1.204467 CAAGTGTGCAAGTTGGTTGGT 59.796 47.619 4.75 0.00 35.82 3.67
7434 10775 1.204467 ACAAGTGTGCAAGTTGGTTGG 59.796 47.619 4.75 0.00 42.63 3.77
7435 10776 2.652941 ACAAGTGTGCAAGTTGGTTG 57.347 45.000 4.75 6.30 42.63 3.77
7436 10777 2.560542 TGAACAAGTGTGCAAGTTGGTT 59.439 40.909 4.75 7.44 39.34 3.67
7437 10778 2.166829 TGAACAAGTGTGCAAGTTGGT 58.833 42.857 4.75 11.78 42.07 3.67
7466 10807 2.210116 TCCGTTTTCAGCAGACTTGTC 58.790 47.619 0.00 0.00 0.00 3.18
7528 10874 2.359975 GGCACCTACCACTGGCAC 60.360 66.667 0.00 0.00 33.24 5.01
7531 10877 0.110486 AGTTTGGCACCTACCACTGG 59.890 55.000 0.00 0.00 40.19 4.00
7532 10878 1.238439 CAGTTTGGCACCTACCACTG 58.762 55.000 0.00 0.00 40.19 3.66
7585 10936 6.291067 TGCTTGATTCGTATGATGATTGTC 57.709 37.500 0.00 0.00 0.00 3.18
7598 10974 0.455633 GCTGGTGCTTGCTTGATTCG 60.456 55.000 0.00 0.00 36.03 3.34
7652 11032 1.507140 TGTAGGATGAGGGGCGAAAT 58.493 50.000 0.00 0.00 0.00 2.17
7653 11033 1.281419 TTGTAGGATGAGGGGCGAAA 58.719 50.000 0.00 0.00 0.00 3.46
7654 11034 1.507140 ATTGTAGGATGAGGGGCGAA 58.493 50.000 0.00 0.00 0.00 4.70
7655 11035 1.968493 GTATTGTAGGATGAGGGGCGA 59.032 52.381 0.00 0.00 0.00 5.54
7656 11036 1.971357 AGTATTGTAGGATGAGGGGCG 59.029 52.381 0.00 0.00 0.00 6.13
7657 11037 3.007398 CAGAGTATTGTAGGATGAGGGGC 59.993 52.174 0.00 0.00 0.00 5.80
7658 11038 3.007398 GCAGAGTATTGTAGGATGAGGGG 59.993 52.174 0.00 0.00 0.00 4.79
7659 11039 3.007398 GGCAGAGTATTGTAGGATGAGGG 59.993 52.174 0.00 0.00 0.00 4.30
7660 11040 3.900601 AGGCAGAGTATTGTAGGATGAGG 59.099 47.826 0.00 0.00 0.00 3.86
7661 11041 4.586421 TGAGGCAGAGTATTGTAGGATGAG 59.414 45.833 0.00 0.00 0.00 2.90
7662 11042 4.546674 TGAGGCAGAGTATTGTAGGATGA 58.453 43.478 0.00 0.00 0.00 2.92
7663 11043 4.944619 TGAGGCAGAGTATTGTAGGATG 57.055 45.455 0.00 0.00 0.00 3.51
7664 11044 5.957771 TTTGAGGCAGAGTATTGTAGGAT 57.042 39.130 0.00 0.00 0.00 3.24
7665 11045 5.957771 ATTTGAGGCAGAGTATTGTAGGA 57.042 39.130 0.00 0.00 0.00 2.94
7666 11046 6.599244 TCAAATTTGAGGCAGAGTATTGTAGG 59.401 38.462 16.91 0.00 32.50 3.18
7667 11047 7.615582 TCAAATTTGAGGCAGAGTATTGTAG 57.384 36.000 16.91 0.00 32.50 2.74
7668 11048 7.994425 TTCAAATTTGAGGCAGAGTATTGTA 57.006 32.000 19.64 0.00 38.61 2.41
7669 11049 6.899393 TTCAAATTTGAGGCAGAGTATTGT 57.101 33.333 19.64 0.00 38.61 2.71
7670 11050 7.816031 ACAATTCAAATTTGAGGCAGAGTATTG 59.184 33.333 23.58 23.58 38.61 1.90
7671 11051 7.899973 ACAATTCAAATTTGAGGCAGAGTATT 58.100 30.769 19.64 11.66 38.61 1.89
7672 11052 7.472334 ACAATTCAAATTTGAGGCAGAGTAT 57.528 32.000 19.64 6.46 38.61 2.12
7673 11053 6.899393 ACAATTCAAATTTGAGGCAGAGTA 57.101 33.333 19.64 4.36 38.61 2.59
7674 11054 5.796424 ACAATTCAAATTTGAGGCAGAGT 57.204 34.783 19.64 11.47 38.61 3.24
7675 11055 6.480981 ACAAACAATTCAAATTTGAGGCAGAG 59.519 34.615 19.64 11.47 38.61 3.35
7676 11056 6.347696 ACAAACAATTCAAATTTGAGGCAGA 58.652 32.000 19.64 6.48 38.61 4.26
7677 11057 6.607735 ACAAACAATTCAAATTTGAGGCAG 57.392 33.333 19.64 13.62 38.61 4.85
7678 11058 7.044181 TGTACAAACAATTCAAATTTGAGGCA 58.956 30.769 19.64 7.21 36.91 4.75
7679 11059 7.475771 TGTACAAACAATTCAAATTTGAGGC 57.524 32.000 19.64 6.23 36.91 4.70
7680 11060 9.044150 ACATGTACAAACAATTCAAATTTGAGG 57.956 29.630 19.64 15.48 39.58 3.86
7681 11061 9.852481 CACATGTACAAACAATTCAAATTTGAG 57.148 29.630 19.64 11.83 39.58 3.02
7682 11062 8.333908 GCACATGTACAAACAATTCAAATTTGA 58.666 29.630 16.91 16.91 39.58 2.69
7683 11063 8.121086 TGCACATGTACAAACAATTCAAATTTG 58.879 29.630 12.15 12.15 39.58 2.32
7684 11064 8.206325 TGCACATGTACAAACAATTCAAATTT 57.794 26.923 0.00 0.00 39.58 1.82
7685 11065 7.783090 TGCACATGTACAAACAATTCAAATT 57.217 28.000 0.00 0.00 39.58 1.82
7686 11066 7.783090 TTGCACATGTACAAACAATTCAAAT 57.217 28.000 9.10 0.00 39.58 2.32
7687 11067 7.601073 TTTGCACATGTACAAACAATTCAAA 57.399 28.000 18.30 2.24 39.58 2.69
7688 11068 7.783090 ATTTGCACATGTACAAACAATTCAA 57.217 28.000 23.24 2.62 39.58 2.69
7689 11069 7.783090 AATTTGCACATGTACAAACAATTCA 57.217 28.000 23.24 3.31 39.58 2.57
7690 11070 7.944120 CGTAATTTGCACATGTACAAACAATTC 59.056 33.333 23.24 12.58 39.58 2.17
7691 11071 7.649705 TCGTAATTTGCACATGTACAAACAATT 59.350 29.630 23.24 16.77 39.58 2.32
7692 11072 7.142021 TCGTAATTTGCACATGTACAAACAAT 58.858 30.769 23.24 15.65 39.58 2.71
7693 11073 6.495706 TCGTAATTTGCACATGTACAAACAA 58.504 32.000 23.24 13.20 39.58 2.83
7694 11074 6.061231 TCGTAATTTGCACATGTACAAACA 57.939 33.333 23.24 13.23 38.50 2.83
7695 11075 7.561237 AATCGTAATTTGCACATGTACAAAC 57.439 32.000 23.24 12.74 38.50 2.93
7696 11076 8.508062 ACTAATCGTAATTTGCACATGTACAAA 58.492 29.630 23.05 23.05 39.87 2.83
7697 11077 8.035165 ACTAATCGTAATTTGCACATGTACAA 57.965 30.769 7.43 7.43 0.00 2.41
7698 11078 7.603963 ACTAATCGTAATTTGCACATGTACA 57.396 32.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.