Multiple sequence alignment - TraesCS5D01G519800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G519800 chr5D 100.000 4589 0 0 1 4589 540339180 540343768 0.000000e+00 8475.0
1 TraesCS5D01G519800 chr5D 88.800 1250 123 11 1018 2266 540284947 540286180 0.000000e+00 1517.0
2 TraesCS5D01G519800 chr5D 83.505 97 10 2 152 242 509559200 509559296 8.180000e-13 86.1
3 TraesCS5D01G519800 chr5B 96.587 2901 75 6 705 3596 682817520 682820405 0.000000e+00 4787.0
4 TraesCS5D01G519800 chr5B 87.063 1430 156 17 892 2298 682696250 682697673 0.000000e+00 1589.0
5 TraesCS5D01G519800 chr5B 88.690 168 9 4 3974 4131 682837021 682837188 3.620000e-46 196.0
6 TraesCS5D01G519800 chr5B 89.333 150 14 1 470 619 682817354 682817501 2.180000e-43 187.0
7 TraesCS5D01G519800 chr5B 88.742 151 16 1 4362 4512 682837462 682837611 2.820000e-42 183.0
8 TraesCS5D01G519800 chr5B 90.476 63 2 1 3918 3976 682836936 682836998 3.810000e-11 80.5
9 TraesCS5D01G519800 chr5B 79.798 99 11 4 1 99 682815922 682816011 3.830000e-06 63.9
10 TraesCS5D01G519800 chr4A 95.168 3001 100 13 763 3742 628483618 628486594 0.000000e+00 4697.0
11 TraesCS5D01G519800 chr4A 87.482 1374 133 20 892 2243 628327326 628328682 0.000000e+00 1548.0
12 TraesCS5D01G519800 chr4A 73.524 593 131 22 2500 3085 61616508 61615935 7.790000e-48 202.0
13 TraesCS5D01G519800 chr4A 88.971 136 12 3 4378 4512 628489319 628489452 1.020000e-36 165.0
14 TraesCS5D01G519800 chr4A 88.571 70 4 1 173 238 83770836 83770905 1.060000e-11 82.4
15 TraesCS5D01G519800 chr4A 89.062 64 4 3 515 575 628481666 628481729 4.920000e-10 76.8
16 TraesCS5D01G519800 chr4A 89.796 49 5 0 4093 4141 628489033 628489081 3.830000e-06 63.9
17 TraesCS5D01G519800 chr1D 83.721 774 95 9 1114 1879 75788809 75789559 0.000000e+00 702.0
18 TraesCS5D01G519800 chr1D 83.750 80 12 1 1260 1339 206494100 206494178 1.770000e-09 75.0
19 TraesCS5D01G519800 chr3A 83.162 778 100 9 1114 1883 11586032 11586786 0.000000e+00 682.0
20 TraesCS5D01G519800 chr3A 73.551 552 109 28 2549 3086 647613209 647613737 4.720000e-40 176.0
21 TraesCS5D01G519800 chr3A 93.069 101 5 2 4423 4521 631298944 631298844 3.700000e-31 147.0
22 TraesCS5D01G519800 chr3A 88.983 118 9 3 4423 4538 631294394 631294279 4.790000e-30 143.0
23 TraesCS5D01G519800 chr2D 83.422 374 42 6 1267 1640 535646781 535647134 3.420000e-86 329.0
24 TraesCS5D01G519800 chr4D 74.030 593 132 19 2501 3085 404111891 404111313 5.980000e-54 222.0
25 TraesCS5D01G519800 chr3D 85.455 220 24 4 1017 1236 31112650 31112861 5.980000e-54 222.0
26 TraesCS5D01G519800 chr3D 93.939 99 4 2 4423 4519 487405232 487405134 1.030000e-31 148.0
27 TraesCS5D01G519800 chr3D 88.618 123 9 4 4423 4543 486141848 486141967 1.330000e-30 145.0
28 TraesCS5D01G519800 chr3D 88.983 118 8 4 4423 4538 487409618 487409504 1.720000e-29 141.0
29 TraesCS5D01G519800 chr3D 84.337 83 9 1 156 234 300775573 300775491 1.370000e-10 78.7
30 TraesCS5D01G519800 chr3D 83.721 86 10 1 157 238 329496953 329496868 1.370000e-10 78.7
31 TraesCS5D01G519800 chr3D 82.222 90 11 2 156 241 563078871 563078783 6.370000e-09 73.1
32 TraesCS5D01G519800 chr4B 74.074 594 124 24 2501 3085 500869312 500868740 2.780000e-52 217.0
33 TraesCS5D01G519800 chr3B 73.540 548 116 23 2549 3086 673170768 673170240 1.010000e-41 182.0
34 TraesCS5D01G519800 chr3B 93.069 101 5 2 4423 4521 650620058 650619958 3.700000e-31 147.0
35 TraesCS5D01G519800 chr3B 88.983 118 9 3 4423 4538 650616254 650616139 4.790000e-30 143.0
36 TraesCS5D01G519800 chr3B 82.418 91 12 3 155 241 820446014 820445924 4.920000e-10 76.8
37 TraesCS5D01G519800 chr7B 74.803 254 54 8 2834 3085 616821420 616821175 6.280000e-19 106.0
38 TraesCS5D01G519800 chr7D 74.615 260 50 9 2831 3085 566015849 566016097 2.920000e-17 100.0
39 TraesCS5D01G519800 chr7D 82.955 88 11 1 155 238 226690341 226690428 4.920000e-10 76.8
40 TraesCS5D01G519800 chr7D 83.333 84 10 1 159 238 510874226 510874309 1.770000e-09 75.0
41 TraesCS5D01G519800 chr1B 85.000 80 11 1 1260 1339 302205215 302205293 3.810000e-11 80.5
42 TraesCS5D01G519800 chr7A 85.000 80 7 5 169 243 47010987 47011066 4.920000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G519800 chr5D 540339180 540343768 4588 False 8475.000 8475 100.000000 1 4589 1 chr5D.!!$F3 4588
1 TraesCS5D01G519800 chr5D 540284947 540286180 1233 False 1517.000 1517 88.800000 1018 2266 1 chr5D.!!$F2 1248
2 TraesCS5D01G519800 chr5B 682815922 682820405 4483 False 1679.300 4787 88.572667 1 3596 3 chr5B.!!$F2 3595
3 TraesCS5D01G519800 chr5B 682696250 682697673 1423 False 1589.000 1589 87.063000 892 2298 1 chr5B.!!$F1 1406
4 TraesCS5D01G519800 chr4A 628327326 628328682 1356 False 1548.000 1548 87.482000 892 2243 1 chr4A.!!$F2 1351
5 TraesCS5D01G519800 chr4A 628481666 628489452 7786 False 1250.675 4697 90.749250 515 4512 4 chr4A.!!$F3 3997
6 TraesCS5D01G519800 chr4A 61615935 61616508 573 True 202.000 202 73.524000 2500 3085 1 chr4A.!!$R1 585
7 TraesCS5D01G519800 chr1D 75788809 75789559 750 False 702.000 702 83.721000 1114 1879 1 chr1D.!!$F1 765
8 TraesCS5D01G519800 chr3A 11586032 11586786 754 False 682.000 682 83.162000 1114 1883 1 chr3A.!!$F1 769
9 TraesCS5D01G519800 chr4D 404111313 404111891 578 True 222.000 222 74.030000 2501 3085 1 chr4D.!!$R1 584
10 TraesCS5D01G519800 chr4B 500868740 500869312 572 True 217.000 217 74.074000 2501 3085 1 chr4B.!!$R1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 870 0.038526 TCGACGAAGAAGAACTGGCC 60.039 55.000 0.00 0.00 0.00 5.36 F
977 3763 0.179084 GAATCCGCGGTCATCTTCCA 60.179 55.000 27.15 1.58 0.00 3.53 F
1050 3854 2.359602 TGCTGCTGCTGCTTCCTC 60.360 61.111 27.67 3.30 40.48 3.71 F
1943 4754 2.686956 TTCGAGCTCAACGACGCCAA 62.687 55.000 15.40 0.00 39.46 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 4644 2.022129 GAACACCTCGCACTGGTCG 61.022 63.158 0.00 0.0 35.28 4.79 R
2568 5379 2.045536 CCCTCCAGCTGCTTCACC 60.046 66.667 8.66 0.0 0.00 4.02 R
3216 6033 3.952508 ACCTGCGCCATGTCCACA 61.953 61.111 4.18 0.0 0.00 4.17 R
3745 6574 0.039326 AAAAGGCAGAGCAGCTCCAT 59.961 50.000 19.40 0.0 34.17 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 115 8.585471 GATGTCATCCAATGGAAATATATGGT 57.415 34.615 5.89 0.00 34.34 3.55
75 136 6.684686 TGGTATATACGAGCATCCACTTTAC 58.315 40.000 6.79 0.00 0.00 2.01
94 155 7.112984 CACTTTACTTTGTGTTTTCGCTATTCC 59.887 37.037 0.00 0.00 0.00 3.01
107 168 1.379527 CTATTCCCAAACGACAGGGC 58.620 55.000 6.04 0.00 45.07 5.19
109 170 0.178975 ATTCCCAAACGACAGGGCAA 60.179 50.000 6.04 3.26 45.07 4.52
110 171 0.178975 TTCCCAAACGACAGGGCAAT 60.179 50.000 6.04 0.00 45.07 3.56
112 173 0.808755 CCCAAACGACAGGGCAATAC 59.191 55.000 0.00 0.00 38.44 1.89
113 174 1.529226 CCAAACGACAGGGCAATACA 58.471 50.000 0.00 0.00 0.00 2.29
117 244 4.156922 CCAAACGACAGGGCAATACATTTA 59.843 41.667 0.00 0.00 0.00 1.40
125 252 7.238486 ACAGGGCAATACATTTATTGTTTCA 57.762 32.000 12.10 0.00 44.57 2.69
126 253 7.675062 ACAGGGCAATACATTTATTGTTTCAA 58.325 30.769 12.10 0.00 44.57 2.69
128 255 7.064490 CAGGGCAATACATTTATTGTTTCAACC 59.936 37.037 12.10 4.86 44.57 3.77
130 257 7.389053 GGGCAATACATTTATTGTTTCAACCAA 59.611 33.333 12.10 0.00 44.57 3.67
167 294 5.963176 GGGGAGTACTATACTACTCTTGC 57.037 47.826 15.15 3.94 41.68 4.01
168 295 4.766373 GGGGAGTACTATACTACTCTTGCC 59.234 50.000 15.15 10.11 41.68 4.52
169 296 4.766373 GGGAGTACTATACTACTCTTGCCC 59.234 50.000 15.15 8.14 41.68 5.36
171 298 6.069994 GGAGTACTATACTACTCTTGCCCTT 58.930 44.000 15.15 0.00 41.68 3.95
172 299 6.207221 GGAGTACTATACTACTCTTGCCCTTC 59.793 46.154 15.15 0.00 41.68 3.46
175 302 5.468658 ACTATACTACTCTTGCCCTTCCAT 58.531 41.667 0.00 0.00 0.00 3.41
176 303 6.621394 ACTATACTACTCTTGCCCTTCCATA 58.379 40.000 0.00 0.00 0.00 2.74
177 304 7.073854 ACTATACTACTCTTGCCCTTCCATAA 58.926 38.462 0.00 0.00 0.00 1.90
178 305 7.735321 ACTATACTACTCTTGCCCTTCCATAAT 59.265 37.037 0.00 0.00 0.00 1.28
180 307 8.686739 ATACTACTCTTGCCCTTCCATAATAT 57.313 34.615 0.00 0.00 0.00 1.28
182 309 8.506196 ACTACTCTTGCCCTTCCATAATATAA 57.494 34.615 0.00 0.00 0.00 0.98
183 310 8.598041 ACTACTCTTGCCCTTCCATAATATAAG 58.402 37.037 0.00 0.00 0.00 1.73
184 311 7.633018 ACTCTTGCCCTTCCATAATATAAGA 57.367 36.000 0.00 0.00 0.00 2.10
185 312 7.684529 ACTCTTGCCCTTCCATAATATAAGAG 58.315 38.462 0.00 0.00 42.44 2.85
186 313 6.476378 TCTTGCCCTTCCATAATATAAGAGC 58.524 40.000 0.00 0.00 0.00 4.09
187 314 4.832248 TGCCCTTCCATAATATAAGAGCG 58.168 43.478 0.00 0.00 27.56 5.03
188 315 4.286032 TGCCCTTCCATAATATAAGAGCGT 59.714 41.667 0.00 0.00 27.56 5.07
190 317 5.705905 GCCCTTCCATAATATAAGAGCGTTT 59.294 40.000 0.00 0.00 0.00 3.60
191 318 6.206829 GCCCTTCCATAATATAAGAGCGTTTT 59.793 38.462 0.00 0.00 0.00 2.43
195 322 9.651718 CTTCCATAATATAAGAGCGTTTTTGAC 57.348 33.333 0.00 0.00 0.00 3.18
196 323 8.725405 TCCATAATATAAGAGCGTTTTTGACA 57.275 30.769 0.00 0.00 0.00 3.58
197 324 8.609176 TCCATAATATAAGAGCGTTTTTGACAC 58.391 33.333 0.00 0.00 0.00 3.67
198 325 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
201 328 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
204 331 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
205 332 5.539048 AGAGCGTTTTTGACACTAGTGTAT 58.461 37.500 27.98 7.14 45.05 2.29
207 334 5.985781 AGCGTTTTTGACACTAGTGTATTG 58.014 37.500 27.98 14.20 45.05 1.90
209 336 5.844396 GCGTTTTTGACACTAGTGTATTGTC 59.156 40.000 27.98 15.61 45.05 3.18
210 337 6.510478 GCGTTTTTGACACTAGTGTATTGTCA 60.510 38.462 27.98 17.99 45.05 3.58
214 341 5.468540 TGACACTAGTGTATTGTCAAGCT 57.531 39.130 27.98 0.91 42.81 3.74
215 342 5.853936 TGACACTAGTGTATTGTCAAGCTT 58.146 37.500 27.98 0.69 42.81 3.74
217 344 6.765989 TGACACTAGTGTATTGTCAAGCTTTT 59.234 34.615 27.98 0.00 42.81 2.27
219 346 8.848474 ACACTAGTGTATTGTCAAGCTTTTAT 57.152 30.769 26.91 0.00 42.90 1.40
220 347 9.938280 ACACTAGTGTATTGTCAAGCTTTTATA 57.062 29.630 26.91 0.00 42.90 0.98
250 377 4.601084 ACGGAGAGAGGATTTCTTAGTCA 58.399 43.478 0.00 0.00 35.87 3.41
251 378 5.205056 ACGGAGAGAGGATTTCTTAGTCAT 58.795 41.667 0.00 0.00 35.87 3.06
259 386 6.322712 AGAGGATTTCTTAGTCATCGCTAAGT 59.677 38.462 11.20 0.00 44.88 2.24
266 393 6.427974 TCTTAGTCATCGCTAAGTAATGTCG 58.572 40.000 11.20 0.00 44.88 4.35
267 394 4.634184 AGTCATCGCTAAGTAATGTCGT 57.366 40.909 0.00 0.00 0.00 4.34
268 395 4.352039 AGTCATCGCTAAGTAATGTCGTG 58.648 43.478 0.00 0.00 0.00 4.35
269 396 4.103357 GTCATCGCTAAGTAATGTCGTGT 58.897 43.478 0.00 0.00 0.00 4.49
272 399 3.495193 TCGCTAAGTAATGTCGTGTGAC 58.505 45.455 0.00 0.00 45.71 3.67
280 407 3.938112 GTCGTGTGACACTGAGGC 58.062 61.111 14.42 0.00 44.82 4.70
288 654 2.203640 ACACTGAGGCCCTCGTCA 60.204 61.111 6.21 0.00 35.94 4.35
289 655 1.608717 GACACTGAGGCCCTCGTCAT 61.609 60.000 6.21 0.00 36.62 3.06
291 657 1.305297 ACTGAGGCCCTCGTCATCA 60.305 57.895 6.21 0.00 36.62 3.07
292 658 0.904865 ACTGAGGCCCTCGTCATCAA 60.905 55.000 6.21 0.00 36.62 2.57
298 664 2.264480 CCTCGTCATCAACCGCCA 59.736 61.111 0.00 0.00 0.00 5.69
300 666 1.374125 CTCGTCATCAACCGCCACA 60.374 57.895 0.00 0.00 0.00 4.17
304 670 1.002257 TCATCAACCGCCACATGCT 60.002 52.632 0.00 0.00 38.05 3.79
305 671 0.251634 TCATCAACCGCCACATGCTA 59.748 50.000 0.00 0.00 38.05 3.49
306 672 0.659427 CATCAACCGCCACATGCTAG 59.341 55.000 0.00 0.00 38.05 3.42
307 673 0.253044 ATCAACCGCCACATGCTAGT 59.747 50.000 0.00 0.00 38.05 2.57
308 674 0.673333 TCAACCGCCACATGCTAGTG 60.673 55.000 0.00 2.61 38.05 2.74
309 675 2.040544 AACCGCCACATGCTAGTGC 61.041 57.895 0.00 0.00 38.18 4.40
321 687 0.240145 GCTAGTGCAAAAACCGTCCC 59.760 55.000 0.00 0.00 39.41 4.46
322 688 1.600023 CTAGTGCAAAAACCGTCCCA 58.400 50.000 0.00 0.00 0.00 4.37
323 689 1.950909 CTAGTGCAAAAACCGTCCCAA 59.049 47.619 0.00 0.00 0.00 4.12
324 690 0.744281 AGTGCAAAAACCGTCCCAAG 59.256 50.000 0.00 0.00 0.00 3.61
325 691 0.458260 GTGCAAAAACCGTCCCAAGT 59.542 50.000 0.00 0.00 0.00 3.16
326 692 1.134936 GTGCAAAAACCGTCCCAAGTT 60.135 47.619 0.00 0.00 0.00 2.66
327 693 2.099427 GTGCAAAAACCGTCCCAAGTTA 59.901 45.455 0.00 0.00 0.00 2.24
328 694 2.758979 TGCAAAAACCGTCCCAAGTTAA 59.241 40.909 0.00 0.00 0.00 2.01
329 695 3.194968 TGCAAAAACCGTCCCAAGTTAAA 59.805 39.130 0.00 0.00 0.00 1.52
331 697 4.210328 GCAAAAACCGTCCCAAGTTAAATG 59.790 41.667 0.00 0.00 0.00 2.32
332 698 5.593010 CAAAAACCGTCCCAAGTTAAATGA 58.407 37.500 0.00 0.00 0.00 2.57
334 700 3.495434 ACCGTCCCAAGTTAAATGACA 57.505 42.857 0.00 0.00 0.00 3.58
335 701 3.822940 ACCGTCCCAAGTTAAATGACAA 58.177 40.909 0.00 0.00 0.00 3.18
336 702 3.818773 ACCGTCCCAAGTTAAATGACAAG 59.181 43.478 0.00 0.00 0.00 3.16
337 703 3.365969 CCGTCCCAAGTTAAATGACAAGC 60.366 47.826 0.00 0.00 0.00 4.01
339 705 4.082787 CGTCCCAAGTTAAATGACAAGCAT 60.083 41.667 0.00 0.00 39.43 3.79
340 706 5.163513 GTCCCAAGTTAAATGACAAGCATG 58.836 41.667 0.00 0.00 37.28 4.06
341 707 5.048083 GTCCCAAGTTAAATGACAAGCATGA 60.048 40.000 0.00 0.00 37.28 3.07
343 709 5.808540 CCCAAGTTAAATGACAAGCATGATG 59.191 40.000 0.00 0.00 37.28 3.07
345 711 5.002464 AGTTAAATGACAAGCATGATGCC 57.998 39.130 14.72 0.00 46.52 4.40
346 712 2.572191 AAATGACAAGCATGATGCCG 57.428 45.000 14.72 8.37 46.52 5.69
347 713 1.753930 AATGACAAGCATGATGCCGA 58.246 45.000 14.72 0.00 46.52 5.54
348 714 1.306148 ATGACAAGCATGATGCCGAG 58.694 50.000 14.72 6.80 46.52 4.63
349 715 0.745486 TGACAAGCATGATGCCGAGG 60.745 55.000 14.72 3.80 46.52 4.63
350 716 0.745845 GACAAGCATGATGCCGAGGT 60.746 55.000 14.72 7.17 46.52 3.85
351 717 0.745845 ACAAGCATGATGCCGAGGTC 60.746 55.000 14.72 0.00 46.52 3.85
353 719 0.463295 AAGCATGATGCCGAGGTCTG 60.463 55.000 14.72 0.00 46.52 3.51
355 721 1.434622 GCATGATGCCGAGGTCTGTG 61.435 60.000 6.04 0.00 37.42 3.66
356 722 1.153289 ATGATGCCGAGGTCTGTGC 60.153 57.895 0.00 0.00 0.00 4.57
357 723 1.902765 ATGATGCCGAGGTCTGTGCA 61.903 55.000 0.00 0.00 38.23 4.57
358 724 2.046892 ATGCCGAGGTCTGTGCAC 60.047 61.111 10.75 10.75 36.41 4.57
359 725 3.612247 ATGCCGAGGTCTGTGCACC 62.612 63.158 15.69 0.00 36.41 5.01
361 727 4.742201 CCGAGGTCTGTGCACCGG 62.742 72.222 15.69 14.79 41.90 5.28
409 847 1.376037 GAAGGCAGTTCGTGAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
431 869 1.341606 CTCGACGAAGAAGAACTGGC 58.658 55.000 0.00 0.00 0.00 4.85
432 870 0.038526 TCGACGAAGAAGAACTGGCC 60.039 55.000 0.00 0.00 0.00 5.36
437 875 1.661112 CGAAGAAGAACTGGCCGATTC 59.339 52.381 10.18 10.18 0.00 2.52
458 896 1.550072 CCCCCTCGCAAACAAATCATT 59.450 47.619 0.00 0.00 0.00 2.57
459 897 2.028203 CCCCCTCGCAAACAAATCATTT 60.028 45.455 0.00 0.00 0.00 2.32
460 898 3.556843 CCCCCTCGCAAACAAATCATTTT 60.557 43.478 0.00 0.00 0.00 1.82
461 899 3.432933 CCCCTCGCAAACAAATCATTTTG 59.567 43.478 0.00 0.00 46.27 2.44
462 900 4.305769 CCCTCGCAAACAAATCATTTTGA 58.694 39.130 5.52 0.00 44.11 2.69
463 901 4.749099 CCCTCGCAAACAAATCATTTTGAA 59.251 37.500 5.52 0.00 44.11 2.69
464 902 5.409214 CCCTCGCAAACAAATCATTTTGAAT 59.591 36.000 5.52 0.00 44.11 2.57
465 903 6.401367 CCCTCGCAAACAAATCATTTTGAATC 60.401 38.462 5.52 0.00 44.11 2.52
467 905 7.107834 TCGCAAACAAATCATTTTGAATCAG 57.892 32.000 5.52 0.00 44.11 2.90
479 1455 5.964958 TTTTGAATCAGAAGTGGATCACC 57.035 39.130 0.00 0.00 34.49 4.02
483 1459 5.982356 TGAATCAGAAGTGGATCACCTAAG 58.018 41.667 0.00 0.00 34.49 2.18
520 1496 5.514914 GCAACTTTTGATTTTGACTTCGTGA 59.485 36.000 0.00 0.00 0.00 4.35
525 1501 7.908601 ACTTTTGATTTTGACTTCGTGAACTAC 59.091 33.333 0.00 0.00 0.00 2.73
528 1504 7.310072 TGATTTTGACTTCGTGAACTACAAA 57.690 32.000 0.00 0.00 0.00 2.83
529 1505 7.753659 TGATTTTGACTTCGTGAACTACAAAA 58.246 30.769 0.00 0.00 39.07 2.44
536 1512 7.493320 TGACTTCGTGAACTACAAAATACAAGT 59.507 33.333 0.00 0.00 0.00 3.16
576 1552 2.561569 ACTCGGCTAAAATTCCCATCG 58.438 47.619 0.00 0.00 0.00 3.84
615 1591 9.790389 CTACAGAGTTGTTAATTACTAGTCCAG 57.210 37.037 0.00 0.00 38.76 3.86
619 1595 8.867097 AGAGTTGTTAATTACTAGTCCAGTTCA 58.133 33.333 0.00 0.00 38.80 3.18
620 1596 9.485206 GAGTTGTTAATTACTAGTCCAGTTCAA 57.515 33.333 0.00 0.00 38.80 2.69
621 1597 9.841295 AGTTGTTAATTACTAGTCCAGTTCAAA 57.159 29.630 0.00 0.00 38.80 2.69
651 1627 9.705290 AATACCAGTTTATTCGCAAATTTTTCT 57.295 25.926 0.00 0.00 0.00 2.52
652 1628 9.705290 ATACCAGTTTATTCGCAAATTTTTCTT 57.295 25.926 0.00 0.00 0.00 2.52
654 1630 9.535878 ACCAGTTTATTCGCAAATTTTTCTTAA 57.464 25.926 0.00 0.00 0.00 1.85
687 1663 1.538075 GTCCACAACAAACATACGGGG 59.462 52.381 0.00 0.00 0.00 5.73
691 1667 3.181474 CCACAACAAACATACGGGGTTTT 60.181 43.478 0.00 0.00 36.38 2.43
693 1669 4.504826 CACAACAAACATACGGGGTTTTTC 59.495 41.667 0.00 0.00 36.38 2.29
694 1670 3.629438 ACAAACATACGGGGTTTTTCG 57.371 42.857 0.00 0.00 36.38 3.46
695 1671 2.287728 ACAAACATACGGGGTTTTTCGC 60.288 45.455 0.00 0.00 36.38 4.70
696 1672 0.518195 AACATACGGGGTTTTTCGCG 59.482 50.000 0.00 0.00 46.34 5.87
700 3478 1.303309 TACGGGGTTTTTCGCGAAAA 58.697 45.000 35.98 35.98 44.22 2.29
741 3519 1.269936 ACCGAACAACTACAAGGACCG 60.270 52.381 0.00 0.00 0.00 4.79
757 3535 3.084579 CGAGCACGGTCATTGAGC 58.915 61.111 5.77 5.77 35.72 4.26
977 3763 0.179084 GAATCCGCGGTCATCTTCCA 60.179 55.000 27.15 1.58 0.00 3.53
1050 3854 2.359602 TGCTGCTGCTGCTTCCTC 60.360 61.111 27.67 3.30 40.48 3.71
1942 4753 3.202216 TTCGAGCTCAACGACGCCA 62.202 57.895 15.40 0.00 39.46 5.69
1943 4754 2.686956 TTCGAGCTCAACGACGCCAA 62.687 55.000 15.40 0.00 39.46 4.52
2245 5056 3.646715 TCTGTTTCCCCGGCCAGG 61.647 66.667 2.24 0.00 40.63 4.45
2349 5160 4.699522 GTGGTGTCCGGGCTGGTC 62.700 72.222 13.14 7.55 39.52 4.02
3378 6195 0.388520 CGTCGGACAGCTTCATGACA 60.389 55.000 9.10 0.00 33.02 3.58
3384 6201 1.723542 GACAGCTTCATGACAGTGACG 59.276 52.381 0.00 0.00 0.00 4.35
3596 6413 4.095410 ACATGACAATGTAACATTGCCG 57.905 40.909 0.38 0.00 45.41 5.69
3597 6414 3.119531 ACATGACAATGTAACATTGCCGG 60.120 43.478 0.38 0.00 45.41 6.13
3598 6415 1.201181 TGACAATGTAACATTGCCGGC 59.799 47.619 22.73 22.73 32.55 6.13
3600 6417 0.170116 CAATGTAACATTGCCGGCGT 59.830 50.000 23.90 11.27 0.00 5.68
3602 6419 0.675208 ATGTAACATTGCCGGCGTCA 60.675 50.000 23.90 8.84 0.00 4.35
3603 6420 1.295357 TGTAACATTGCCGGCGTCAG 61.295 55.000 23.90 14.12 0.00 3.51
3614 6431 2.507324 GCGTCAGTCTTCTCCGGC 60.507 66.667 0.00 0.00 0.00 6.13
3615 6432 2.202492 CGTCAGTCTTCTCCGGCG 60.202 66.667 0.00 0.00 0.00 6.46
3616 6433 2.507324 GTCAGTCTTCTCCGGCGC 60.507 66.667 0.00 0.00 0.00 6.53
3617 6434 2.989253 TCAGTCTTCTCCGGCGCA 60.989 61.111 10.83 0.00 0.00 6.09
3618 6435 2.507992 CAGTCTTCTCCGGCGCAG 60.508 66.667 10.83 4.65 0.00 5.18
3619 6436 2.992114 AGTCTTCTCCGGCGCAGT 60.992 61.111 10.83 0.00 0.00 4.40
3636 6465 3.980775 CGCAGTGAAAACGATGGAAAATT 59.019 39.130 0.00 0.00 0.00 1.82
3638 6467 4.088496 GCAGTGAAAACGATGGAAAATTCG 59.912 41.667 0.00 0.00 41.04 3.34
3647 6476 1.153353 TGGAAAATTCGTCCGTGCTC 58.847 50.000 4.20 0.00 38.06 4.26
3648 6477 0.094730 GGAAAATTCGTCCGTGCTCG 59.905 55.000 0.14 0.14 0.00 5.03
3659 6488 2.771639 CGTGCTCGGATCGAAGGGA 61.772 63.158 0.00 0.00 34.74 4.20
3662 6491 0.108329 TGCTCGGATCGAAGGGAAAC 60.108 55.000 0.00 0.00 34.74 2.78
3679 6508 3.401411 CCGCGCAGATCATCGAGC 61.401 66.667 8.75 3.61 0.00 5.03
3680 6509 3.750413 CGCGCAGATCATCGAGCG 61.750 66.667 19.31 19.31 44.35 5.03
3682 6511 2.363555 GCGCAGATCATCGAGCGAG 61.364 63.158 25.39 4.26 44.31 5.03
3684 6513 0.996229 CGCAGATCATCGAGCGAGTC 60.996 60.000 18.98 0.27 44.31 3.36
3687 6516 1.333308 CAGATCATCGAGCGAGTCAGT 59.667 52.381 0.00 0.00 0.00 3.41
3690 6519 1.165270 TCATCGAGCGAGTCAGTGAA 58.835 50.000 0.00 0.00 0.00 3.18
3699 6528 2.893637 CGAGTCAGTGAATTGGTAGGG 58.106 52.381 0.00 0.00 0.00 3.53
3700 6529 2.233922 CGAGTCAGTGAATTGGTAGGGT 59.766 50.000 0.00 0.00 0.00 4.34
3702 6531 2.305927 AGTCAGTGAATTGGTAGGGTGG 59.694 50.000 0.00 0.00 0.00 4.61
3703 6532 2.039879 GTCAGTGAATTGGTAGGGTGGT 59.960 50.000 0.00 0.00 0.00 4.16
3704 6533 2.304761 TCAGTGAATTGGTAGGGTGGTC 59.695 50.000 0.00 0.00 0.00 4.02
3705 6534 2.305927 CAGTGAATTGGTAGGGTGGTCT 59.694 50.000 0.00 0.00 0.00 3.85
3706 6535 3.517901 CAGTGAATTGGTAGGGTGGTCTA 59.482 47.826 0.00 0.00 0.00 2.59
3707 6536 3.775316 AGTGAATTGGTAGGGTGGTCTAG 59.225 47.826 0.00 0.00 0.00 2.43
3708 6537 2.504175 TGAATTGGTAGGGTGGTCTAGC 59.496 50.000 0.00 0.00 38.00 3.42
3742 6571 3.374042 TGGTTTTGTTCTTGGTGGAGA 57.626 42.857 0.00 0.00 0.00 3.71
3743 6572 3.287222 TGGTTTTGTTCTTGGTGGAGAG 58.713 45.455 0.00 0.00 0.00 3.20
3745 6574 2.687935 GTTTTGTTCTTGGTGGAGAGCA 59.312 45.455 0.00 0.00 35.47 4.26
3746 6575 2.957402 TTGTTCTTGGTGGAGAGCAT 57.043 45.000 0.00 0.00 36.87 3.79
3747 6576 2.189594 TGTTCTTGGTGGAGAGCATG 57.810 50.000 0.00 0.00 32.85 4.06
3748 6577 1.271543 TGTTCTTGGTGGAGAGCATGG 60.272 52.381 0.00 0.00 32.85 3.66
3749 6578 1.003580 GTTCTTGGTGGAGAGCATGGA 59.996 52.381 0.00 0.00 0.00 3.41
3750 6579 0.907486 TCTTGGTGGAGAGCATGGAG 59.093 55.000 0.00 0.00 0.00 3.86
3751 6580 0.747283 CTTGGTGGAGAGCATGGAGC 60.747 60.000 0.00 0.00 46.19 4.70
3762 6591 1.077644 CATGGAGCTGCTCTGCCTT 60.078 57.895 27.09 8.80 31.33 4.35
3767 6605 0.803740 GAGCTGCTCTGCCTTTTGAG 59.196 55.000 21.93 0.00 0.00 3.02
3778 6616 2.624636 GCCTTTTGAGATTTGGCATGG 58.375 47.619 0.00 0.00 42.79 3.66
3781 6619 3.998341 CCTTTTGAGATTTGGCATGGTTG 59.002 43.478 0.00 0.00 0.00 3.77
3801 6639 2.356695 TGAGAAGCATGCATGTATGTGC 59.643 45.455 26.79 13.90 45.25 4.57
3803 6641 1.406180 GAAGCATGCATGTATGTGCCA 59.594 47.619 26.79 0.00 44.43 4.92
3804 6642 1.029681 AGCATGCATGTATGTGCCAG 58.970 50.000 26.79 0.00 44.43 4.85
3809 6647 3.002038 TGCATGTATGTGCCAGATGAA 57.998 42.857 0.00 0.00 44.43 2.57
3813 6651 2.710377 TGTATGTGCCAGATGAACCAC 58.290 47.619 0.00 0.00 0.00 4.16
3815 6653 2.291209 ATGTGCCAGATGAACCACAA 57.709 45.000 0.00 0.00 41.02 3.33
3817 6655 2.596346 TGTGCCAGATGAACCACAATT 58.404 42.857 0.00 0.00 35.48 2.32
3845 6928 4.880696 AGTAATAGAACTAGACCGAACGCT 59.119 41.667 0.00 0.00 0.00 5.07
3847 6930 4.809815 ATAGAACTAGACCGAACGCTAC 57.190 45.455 0.00 0.00 0.00 3.58
3849 6932 3.866651 AGAACTAGACCGAACGCTACTA 58.133 45.455 0.00 0.00 0.00 1.82
3859 6942 5.343249 ACCGAACGCTACTAATCGTAATTT 58.657 37.500 0.00 0.00 38.03 1.82
3860 6943 5.230726 ACCGAACGCTACTAATCGTAATTTG 59.769 40.000 0.00 0.00 38.03 2.32
3861 6944 5.121676 CGAACGCTACTAATCGTAATTTGC 58.878 41.667 0.00 0.00 38.03 3.68
3862 6945 5.276020 CGAACGCTACTAATCGTAATTTGCA 60.276 40.000 0.00 0.00 38.03 4.08
3863 6946 5.385396 ACGCTACTAATCGTAATTTGCAC 57.615 39.130 0.00 0.00 37.14 4.57
3864 6947 4.865925 ACGCTACTAATCGTAATTTGCACA 59.134 37.500 0.00 0.00 37.14 4.57
3873 6956 7.561237 AATCGTAATTTGCACATGTACAAAC 57.439 32.000 23.24 12.74 38.50 2.93
3898 6984 7.816031 ACAATTCAAATTTGAGGCAGAGTATTG 59.184 33.333 23.58 23.58 38.61 1.90
3908 6994 3.900601 AGGCAGAGTATTGTAGGATGAGG 59.099 47.826 0.00 0.00 0.00 3.86
3914 7000 1.507140 ATTGTAGGATGAGGGGCGAA 58.493 50.000 0.00 0.00 0.00 4.70
3931 7017 3.241741 GGCGAAATTTGTGATGCATTTCG 60.242 43.478 19.48 19.48 45.20 3.46
3935 7021 5.276020 CGAAATTTGTGATGCATTTCGGATG 60.276 40.000 17.15 0.00 41.82 3.51
3936 7022 2.565210 TTGTGATGCATTTCGGATGC 57.435 45.000 15.03 15.03 44.76 3.91
3937 7023 0.740149 TGTGATGCATTTCGGATGCC 59.260 50.000 17.90 7.68 43.94 4.40
3961 8887 2.667536 ACTCTGCGCTGGTGCTTG 60.668 61.111 14.70 1.49 36.97 4.01
3962 8888 4.099170 CTCTGCGCTGGTGCTTGC 62.099 66.667 14.70 0.00 36.97 4.01
3963 8889 4.631247 TCTGCGCTGGTGCTTGCT 62.631 61.111 14.70 0.00 36.97 3.91
3965 8891 3.891586 CTGCGCTGGTGCTTGCTTG 62.892 63.158 9.73 0.00 36.97 4.01
3968 8894 1.582968 CGCTGGTGCTTGCTTGATT 59.417 52.632 0.00 0.00 36.97 2.57
3969 8895 0.455633 CGCTGGTGCTTGCTTGATTC 60.456 55.000 0.00 0.00 36.97 2.52
3971 8897 0.877071 CTGGTGCTTGCTTGATTCGT 59.123 50.000 0.00 0.00 0.00 3.85
3972 8898 2.076100 CTGGTGCTTGCTTGATTCGTA 58.924 47.619 0.00 0.00 0.00 3.43
3973 8899 2.679837 CTGGTGCTTGCTTGATTCGTAT 59.320 45.455 0.00 0.00 0.00 3.06
3985 8936 6.484308 TGCTTGATTCGTATGATGATTGTCAT 59.516 34.615 0.00 0.00 40.34 3.06
4005 8956 4.775780 TCATTAGTACTAGTGCCTTGGTGT 59.224 41.667 18.05 0.00 0.00 4.16
4014 8965 2.961424 GCCTTGGTGTTATGGCACT 58.039 52.632 0.00 0.00 44.34 4.40
4015 8966 0.527565 GCCTTGGTGTTATGGCACTG 59.472 55.000 0.00 0.00 44.34 3.66
4016 8967 1.176527 CCTTGGTGTTATGGCACTGG 58.823 55.000 0.00 0.00 39.21 4.00
4017 8968 0.527565 CTTGGTGTTATGGCACTGGC 59.472 55.000 0.00 0.00 39.21 4.85
4018 8969 0.178978 TTGGTGTTATGGCACTGGCA 60.179 50.000 7.88 7.88 43.71 4.92
4020 8971 0.609131 GGTGTTATGGCACTGGCAGT 60.609 55.000 15.88 15.88 42.43 4.40
4021 8972 1.247567 GTGTTATGGCACTGGCAGTT 58.752 50.000 19.43 6.05 42.43 3.16
4025 8976 1.250154 TATGGCACTGGCAGTTTGGC 61.250 55.000 19.43 20.04 42.43 4.52
4032 8983 3.681473 GGCAGTTTGGCACCTACC 58.319 61.111 0.00 0.00 43.14 3.18
4033 8984 1.228429 GGCAGTTTGGCACCTACCA 60.228 57.895 0.00 0.00 43.14 3.25
4034 8985 1.524008 GGCAGTTTGGCACCTACCAC 61.524 60.000 0.00 0.00 43.14 4.16
4035 8986 0.537371 GCAGTTTGGCACCTACCACT 60.537 55.000 0.00 0.00 40.19 4.00
4037 8988 0.110486 AGTTTGGCACCTACCACTGG 59.890 55.000 0.00 0.00 40.19 4.00
4038 8989 1.228429 TTTGGCACCTACCACTGGC 60.228 57.895 0.00 0.00 40.19 4.85
4039 8990 2.000825 TTTGGCACCTACCACTGGCA 62.001 55.000 0.00 0.00 40.19 4.92
4040 8991 2.359975 GGCACCTACCACTGGCAC 60.360 66.667 0.00 0.00 33.24 5.01
4041 8992 2.750350 GCACCTACCACTGGCACT 59.250 61.111 0.00 0.00 0.00 4.40
4042 8993 1.672356 GCACCTACCACTGGCACTG 60.672 63.158 0.00 0.00 0.00 3.66
4043 8994 1.003355 CACCTACCACTGGCACTGG 60.003 63.158 11.13 11.13 34.62 4.00
4044 8995 2.224159 ACCTACCACTGGCACTGGG 61.224 63.158 16.17 5.58 32.45 4.45
4045 8996 2.224159 CCTACCACTGGCACTGGGT 61.224 63.158 16.17 10.81 35.72 4.51
4046 8997 1.003355 CTACCACTGGCACTGGGTG 60.003 63.158 16.17 7.73 34.18 4.61
4047 8998 1.768482 TACCACTGGCACTGGGTGT 60.768 57.895 16.17 0.08 35.75 4.16
4049 9000 2.595463 CACTGGCACTGGGTGTGG 60.595 66.667 0.00 0.00 46.27 4.17
4063 9014 2.359850 GTGGCTGCATTGGACGGA 60.360 61.111 0.50 0.00 0.00 4.69
4072 9023 3.248446 ATTGGACGGACGTGGGTGG 62.248 63.158 0.53 0.00 0.00 4.61
4075 9026 4.675029 GACGGACGTGGGTGGGTG 62.675 72.222 0.53 0.00 0.00 4.61
4082 9033 4.218686 GTGGGTGGGTGCAGGGTT 62.219 66.667 0.00 0.00 0.00 4.11
4083 9034 3.897122 TGGGTGGGTGCAGGGTTC 61.897 66.667 0.00 0.00 0.00 3.62
4084 9035 4.678743 GGGTGGGTGCAGGGTTCC 62.679 72.222 0.00 0.00 0.00 3.62
4086 9037 4.265056 GTGGGTGCAGGGTTCCGT 62.265 66.667 0.00 0.00 0.00 4.69
4087 9038 3.494254 TGGGTGCAGGGTTCCGTT 61.494 61.111 0.00 0.00 0.00 4.44
4088 9039 2.203437 GGGTGCAGGGTTCCGTTT 60.203 61.111 0.00 0.00 0.00 3.60
4089 9040 1.830847 GGGTGCAGGGTTCCGTTTT 60.831 57.895 0.00 0.00 0.00 2.43
4090 9041 1.658114 GGTGCAGGGTTCCGTTTTC 59.342 57.895 0.00 0.00 0.00 2.29
4091 9042 1.104577 GGTGCAGGGTTCCGTTTTCA 61.105 55.000 0.00 0.00 0.00 2.69
4098 9049 1.594331 GGTTCCGTTTTCAGCAGACT 58.406 50.000 0.00 0.00 0.00 3.24
4102 9053 2.210116 TCCGTTTTCAGCAGACTTGTC 58.790 47.619 0.00 0.00 0.00 3.18
4131 9082 2.166829 TGAACAAGTGTGCAAGTTGGT 58.833 42.857 4.75 11.78 42.07 3.67
4134 9085 1.204467 ACAAGTGTGCAAGTTGGTTGG 59.796 47.619 4.75 0.00 42.63 3.77
4135 9086 1.204467 CAAGTGTGCAAGTTGGTTGGT 59.796 47.619 4.75 0.00 35.82 3.67
4141 9092 2.865551 GTGCAAGTTGGTTGGTTGAATG 59.134 45.455 4.75 0.00 36.56 2.67
4143 9094 2.102252 GCAAGTTGGTTGGTTGAATGGA 59.898 45.455 4.75 0.00 36.56 3.41
4144 9095 3.244181 GCAAGTTGGTTGGTTGAATGGAT 60.244 43.478 4.75 0.00 36.56 3.41
4145 9096 4.309099 CAAGTTGGTTGGTTGAATGGATG 58.691 43.478 0.00 0.00 31.82 3.51
4146 9097 3.843422 AGTTGGTTGGTTGAATGGATGA 58.157 40.909 0.00 0.00 0.00 2.92
4147 9098 4.222336 AGTTGGTTGGTTGAATGGATGAA 58.778 39.130 0.00 0.00 0.00 2.57
4148 9099 4.840115 AGTTGGTTGGTTGAATGGATGAAT 59.160 37.500 0.00 0.00 0.00 2.57
4149 9100 5.307716 AGTTGGTTGGTTGAATGGATGAATT 59.692 36.000 0.00 0.00 0.00 2.17
4150 9101 5.149973 TGGTTGGTTGAATGGATGAATTG 57.850 39.130 0.00 0.00 0.00 2.32
4153 9104 2.500910 TGGTTGAATGGATGAATTGCCC 59.499 45.455 0.00 0.00 0.00 5.36
4154 9105 2.158914 GGTTGAATGGATGAATTGCCCC 60.159 50.000 0.00 0.00 0.00 5.80
4155 9106 1.792115 TGAATGGATGAATTGCCCCC 58.208 50.000 0.00 0.00 0.00 5.40
4156 9107 0.675633 GAATGGATGAATTGCCCCCG 59.324 55.000 0.00 0.00 0.00 5.73
4157 9108 1.402107 AATGGATGAATTGCCCCCGC 61.402 55.000 0.00 0.00 0.00 6.13
4158 9109 2.441901 GGATGAATTGCCCCCGCA 60.442 61.111 0.00 0.00 45.49 5.69
4187 9138 7.677454 AAAAGGAAAAGAATGGATGAATTGC 57.323 32.000 0.00 0.00 0.00 3.56
4190 9141 5.105064 AGGAAAAGAATGGATGAATTGCCAG 60.105 40.000 0.00 0.00 37.64 4.85
4198 9149 1.273048 GATGAATTGCCAGCACACCAA 59.727 47.619 0.00 0.00 0.00 3.67
4202 9153 1.466025 ATTGCCAGCACACCAACCAG 61.466 55.000 0.00 0.00 0.00 4.00
4204 9155 2.555547 GCCAGCACACCAACCAGAC 61.556 63.158 0.00 0.00 0.00 3.51
4226 9182 3.538591 GAGAATCCTGCATCATGTGTCA 58.461 45.455 0.00 0.00 0.00 3.58
4228 9184 3.054582 AGAATCCTGCATCATGTGTCACT 60.055 43.478 4.27 0.00 0.00 3.41
4229 9185 2.391616 TCCTGCATCATGTGTCACTC 57.608 50.000 4.27 0.00 0.00 3.51
4242 9198 4.769688 TGTGTCACTCTTTGTCATCACTT 58.230 39.130 4.27 0.00 0.00 3.16
4244 9200 4.811024 GTGTCACTCTTTGTCATCACTTGA 59.189 41.667 0.00 0.00 0.00 3.02
4258 9214 5.598416 ATCACTTGATGATTACGAGGACA 57.402 39.130 0.00 0.00 46.54 4.02
4259 9215 5.400066 TCACTTGATGATTACGAGGACAA 57.600 39.130 0.00 0.00 29.99 3.18
4261 9217 4.033358 CACTTGATGATTACGAGGACAAGC 59.967 45.833 0.00 0.00 37.38 4.01
4262 9218 3.885724 TGATGATTACGAGGACAAGCA 57.114 42.857 0.00 0.00 0.00 3.91
4263 9219 4.406648 TGATGATTACGAGGACAAGCAT 57.593 40.909 0.00 0.00 33.70 3.79
4264 9220 4.122046 TGATGATTACGAGGACAAGCATG 58.878 43.478 0.00 0.00 31.32 4.06
4266 9222 3.261580 TGATTACGAGGACAAGCATGTG 58.738 45.455 0.00 0.00 40.74 3.21
4267 9223 3.056179 TGATTACGAGGACAAGCATGTGA 60.056 43.478 0.00 0.00 40.74 3.58
4268 9224 3.610040 TTACGAGGACAAGCATGTGAT 57.390 42.857 0.00 0.00 40.74 3.06
4269 9225 1.730501 ACGAGGACAAGCATGTGATG 58.269 50.000 0.00 0.00 40.74 3.07
4271 9227 1.395954 CGAGGACAAGCATGTGATGTG 59.604 52.381 0.00 0.00 40.74 3.21
4272 9228 1.741706 GAGGACAAGCATGTGATGTGG 59.258 52.381 0.00 0.00 40.74 4.17
4273 9229 0.171903 GGACAAGCATGTGATGTGGC 59.828 55.000 0.00 0.00 40.74 5.01
4275 9231 0.885879 ACAAGCATGTGATGTGGCTG 59.114 50.000 0.00 0.00 38.69 4.85
4277 9233 1.132453 CAAGCATGTGATGTGGCTGAG 59.868 52.381 0.00 0.00 36.58 3.35
4278 9234 0.393944 AGCATGTGATGTGGCTGAGG 60.394 55.000 0.00 0.00 34.83 3.86
4279 9235 0.679002 GCATGTGATGTGGCTGAGGT 60.679 55.000 0.00 0.00 0.00 3.85
4280 9236 1.830279 CATGTGATGTGGCTGAGGTT 58.170 50.000 0.00 0.00 0.00 3.50
4281 9237 1.741706 CATGTGATGTGGCTGAGGTTC 59.258 52.381 0.00 0.00 0.00 3.62
4282 9238 0.320683 TGTGATGTGGCTGAGGTTCG 60.321 55.000 0.00 0.00 0.00 3.95
4283 9239 0.320771 GTGATGTGGCTGAGGTTCGT 60.321 55.000 0.00 0.00 0.00 3.85
4286 9242 0.108585 ATGTGGCTGAGGTTCGTGTT 59.891 50.000 0.00 0.00 0.00 3.32
4289 9245 2.215196 GTGGCTGAGGTTCGTGTTTAA 58.785 47.619 0.00 0.00 0.00 1.52
4290 9246 2.812011 GTGGCTGAGGTTCGTGTTTAAT 59.188 45.455 0.00 0.00 0.00 1.40
4291 9247 2.811431 TGGCTGAGGTTCGTGTTTAATG 59.189 45.455 0.00 0.00 0.00 1.90
4292 9248 2.414161 GGCTGAGGTTCGTGTTTAATGC 60.414 50.000 0.00 0.00 0.00 3.56
4293 9249 2.484264 GCTGAGGTTCGTGTTTAATGCT 59.516 45.455 0.00 0.00 0.00 3.79
4294 9250 3.058224 GCTGAGGTTCGTGTTTAATGCTT 60.058 43.478 0.00 0.00 0.00 3.91
4296 9252 3.252215 TGAGGTTCGTGTTTAATGCTTGG 59.748 43.478 0.00 0.00 0.00 3.61
4297 9253 3.219281 AGGTTCGTGTTTAATGCTTGGT 58.781 40.909 0.00 0.00 0.00 3.67
4298 9254 3.634910 AGGTTCGTGTTTAATGCTTGGTT 59.365 39.130 0.00 0.00 0.00 3.67
4299 9255 3.978855 GGTTCGTGTTTAATGCTTGGTTC 59.021 43.478 0.00 0.00 0.00 3.62
4301 9257 3.482436 TCGTGTTTAATGCTTGGTTCCT 58.518 40.909 0.00 0.00 0.00 3.36
4302 9258 3.252215 TCGTGTTTAATGCTTGGTTCCTG 59.748 43.478 0.00 0.00 0.00 3.86
4303 9259 3.611530 CGTGTTTAATGCTTGGTTCCTGG 60.612 47.826 0.00 0.00 0.00 4.45
4304 9260 3.572255 GTGTTTAATGCTTGGTTCCTGGA 59.428 43.478 0.00 0.00 0.00 3.86
4305 9261 4.038642 GTGTTTAATGCTTGGTTCCTGGAA 59.961 41.667 4.68 4.68 0.00 3.53
4306 9262 4.651503 TGTTTAATGCTTGGTTCCTGGAAA 59.348 37.500 11.40 0.00 0.00 3.13
4307 9263 4.864704 TTAATGCTTGGTTCCTGGAAAC 57.135 40.909 17.63 17.63 0.00 2.78
4308 9264 2.380064 ATGCTTGGTTCCTGGAAACA 57.620 45.000 22.86 22.86 37.48 2.83
4318 9274 4.069869 TGGAAACAGCTGCTCTGC 57.930 55.556 15.27 4.14 46.76 4.26
4319 9275 1.962822 TGGAAACAGCTGCTCTGCG 60.963 57.895 15.27 0.00 46.76 5.18
4320 9276 1.963338 GGAAACAGCTGCTCTGCGT 60.963 57.895 15.27 0.00 46.76 5.24
4321 9277 0.670546 GGAAACAGCTGCTCTGCGTA 60.671 55.000 15.27 0.00 46.76 4.42
4323 9279 0.034059 AAACAGCTGCTCTGCGTACT 59.966 50.000 15.27 0.00 46.76 2.73
4324 9280 0.668706 AACAGCTGCTCTGCGTACTG 60.669 55.000 15.27 0.00 46.76 2.74
4326 9282 1.075425 CAGCTGCTCTGCGTACTGTC 61.075 60.000 0.00 0.00 35.78 3.51
4327 9283 2.155194 GCTGCTCTGCGTACTGTCG 61.155 63.158 0.00 0.00 0.00 4.35
4335 9291 3.740397 CGTACTGTCGCCGGTGGA 61.740 66.667 16.49 3.93 0.00 4.02
4336 9292 2.181021 GTACTGTCGCCGGTGGAG 59.819 66.667 16.49 13.81 0.00 3.86
4337 9293 2.034532 TACTGTCGCCGGTGGAGA 59.965 61.111 16.49 4.70 0.00 3.71
4338 9294 2.044555 TACTGTCGCCGGTGGAGAG 61.045 63.158 16.49 16.56 30.97 3.20
4339 9295 2.473891 TACTGTCGCCGGTGGAGAGA 62.474 60.000 22.48 8.02 30.97 3.10
4340 9296 3.057547 CTGTCGCCGGTGGAGAGAG 62.058 68.421 16.49 8.03 36.70 3.20
4341 9297 2.750637 GTCGCCGGTGGAGAGAGA 60.751 66.667 16.49 0.00 30.97 3.10
4342 9298 2.438614 TCGCCGGTGGAGAGAGAG 60.439 66.667 16.49 0.00 0.00 3.20
4344 9300 3.844090 GCCGGTGGAGAGAGAGCC 61.844 72.222 1.90 0.00 0.00 4.70
4345 9301 3.522731 CCGGTGGAGAGAGAGCCG 61.523 72.222 0.00 0.00 41.82 5.52
4346 9302 3.522731 CGGTGGAGAGAGAGCCGG 61.523 72.222 0.00 0.00 38.86 6.13
4348 9304 3.151022 GTGGAGAGAGAGCCGGGG 61.151 72.222 2.18 0.00 0.00 5.73
4363 9336 1.828768 GGGGAGCTCAGATCCACTG 59.171 63.158 17.19 0.00 46.97 3.66
4365 9338 1.145819 GGAGCTCAGATCCACTGCC 59.854 63.158 17.19 0.00 45.38 4.85
4366 9339 1.227205 GAGCTCAGATCCACTGCCG 60.227 63.158 9.40 0.00 45.38 5.69
4367 9340 2.202987 GCTCAGATCCACTGCCGG 60.203 66.667 0.00 0.00 45.38 6.13
4368 9341 2.202987 CTCAGATCCACTGCCGGC 60.203 66.667 22.73 22.73 45.38 6.13
4369 9342 2.685017 TCAGATCCACTGCCGGCT 60.685 61.111 29.70 5.42 45.38 5.52
4371 9344 1.817099 CAGATCCACTGCCGGCTTC 60.817 63.158 29.70 14.02 39.86 3.86
4372 9345 1.992277 AGATCCACTGCCGGCTTCT 60.992 57.895 29.70 15.98 0.00 2.85
4373 9346 1.522580 GATCCACTGCCGGCTTCTC 60.523 63.158 29.70 11.71 0.00 2.87
4374 9347 3.376935 ATCCACTGCCGGCTTCTCG 62.377 63.158 29.70 12.90 0.00 4.04
4383 9356 1.709147 CCGGCTTCTCGGCTTGATTG 61.709 60.000 0.00 0.00 43.71 2.67
4386 9359 0.098376 GCTTCTCGGCTTGATTGCTG 59.902 55.000 0.00 0.00 40.46 4.41
4389 9362 2.045045 TCGGCTTGATTGCTGGGG 60.045 61.111 0.00 0.00 39.62 4.96
4392 9365 1.535204 CGGCTTGATTGCTGGGGTTT 61.535 55.000 0.00 0.00 35.80 3.27
4394 9367 1.899142 GGCTTGATTGCTGGGGTTTAA 59.101 47.619 0.00 0.00 0.00 1.52
4395 9368 2.501316 GGCTTGATTGCTGGGGTTTAAT 59.499 45.455 0.00 0.00 0.00 1.40
4397 9370 4.161377 GGCTTGATTGCTGGGGTTTAATTA 59.839 41.667 0.00 0.00 0.00 1.40
4399 9372 6.348498 GCTTGATTGCTGGGGTTTAATTAAT 58.652 36.000 0.00 0.00 0.00 1.40
4428 9401 7.986320 AGGATAAGACAGAAATCTTGTCATCAG 59.014 37.037 12.44 0.00 44.41 2.90
4429 9402 7.984050 GGATAAGACAGAAATCTTGTCATCAGA 59.016 37.037 12.44 0.00 44.41 3.27
4508 9481 1.741770 CCCGGCGAGACCTCTTTTG 60.742 63.158 9.30 0.00 35.61 2.44
4511 9484 1.226746 CGGCGAGACCTCTTTTGTTT 58.773 50.000 0.00 0.00 35.61 2.83
4512 9485 1.602377 CGGCGAGACCTCTTTTGTTTT 59.398 47.619 0.00 0.00 35.61 2.43
4513 9486 2.032924 CGGCGAGACCTCTTTTGTTTTT 59.967 45.455 0.00 0.00 35.61 1.94
4514 9487 3.249080 CGGCGAGACCTCTTTTGTTTTTA 59.751 43.478 0.00 0.00 35.61 1.52
4515 9488 4.534168 GGCGAGACCTCTTTTGTTTTTAC 58.466 43.478 0.00 0.00 34.51 2.01
4516 9489 4.035909 GGCGAGACCTCTTTTGTTTTTACA 59.964 41.667 0.00 0.00 34.51 2.41
4517 9490 5.278315 GGCGAGACCTCTTTTGTTTTTACAT 60.278 40.000 0.00 0.00 34.51 2.29
4518 9491 6.206498 GCGAGACCTCTTTTGTTTTTACATT 58.794 36.000 0.00 0.00 0.00 2.71
4519 9492 6.695713 GCGAGACCTCTTTTGTTTTTACATTT 59.304 34.615 0.00 0.00 0.00 2.32
4520 9493 7.222031 GCGAGACCTCTTTTGTTTTTACATTTT 59.778 33.333 0.00 0.00 0.00 1.82
4521 9494 9.083080 CGAGACCTCTTTTGTTTTTACATTTTT 57.917 29.630 0.00 0.00 0.00 1.94
4556 9529 9.638300 CCTTTGTAGTAATAACTAGTACGTACG 57.362 37.037 19.49 15.01 38.89 3.67
4558 9531 9.967245 TTTGTAGTAATAACTAGTACGTACGTG 57.033 33.333 30.25 16.00 38.89 4.49
4559 9532 8.126871 TGTAGTAATAACTAGTACGTACGTGG 57.873 38.462 30.25 18.32 38.89 4.94
4560 9533 6.049263 AGTAATAACTAGTACGTACGTGGC 57.951 41.667 30.25 21.37 32.84 5.01
4561 9534 4.963276 AATAACTAGTACGTACGTGGCA 57.037 40.909 30.25 13.46 0.00 4.92
4562 9535 2.619013 AACTAGTACGTACGTGGCAC 57.381 50.000 30.25 20.14 0.00 5.01
4563 9536 0.804989 ACTAGTACGTACGTGGCACC 59.195 55.000 30.25 12.47 0.00 5.01
4564 9537 1.089920 CTAGTACGTACGTGGCACCT 58.910 55.000 30.25 18.22 0.00 4.00
4565 9538 1.470098 CTAGTACGTACGTGGCACCTT 59.530 52.381 30.25 8.72 0.00 3.50
4566 9539 1.533625 AGTACGTACGTGGCACCTTA 58.466 50.000 30.25 5.06 0.00 2.69
4567 9540 2.094675 AGTACGTACGTGGCACCTTAT 58.905 47.619 30.25 2.48 0.00 1.73
4568 9541 2.493278 AGTACGTACGTGGCACCTTATT 59.507 45.455 30.25 1.81 0.00 1.40
4569 9542 3.694072 AGTACGTACGTGGCACCTTATTA 59.306 43.478 30.25 2.87 0.00 0.98
4570 9543 3.155093 ACGTACGTGGCACCTTATTAG 57.845 47.619 22.14 0.00 0.00 1.73
4571 9544 1.856597 CGTACGTGGCACCTTATTAGC 59.143 52.381 12.86 0.00 0.00 3.09
4572 9545 2.480759 CGTACGTGGCACCTTATTAGCT 60.481 50.000 12.86 0.00 0.00 3.32
4573 9546 2.311124 ACGTGGCACCTTATTAGCTC 57.689 50.000 12.86 0.00 0.00 4.09
4574 9547 1.553248 ACGTGGCACCTTATTAGCTCA 59.447 47.619 12.86 0.00 0.00 4.26
4575 9548 2.170607 ACGTGGCACCTTATTAGCTCAT 59.829 45.455 12.86 0.00 0.00 2.90
4576 9549 3.206150 CGTGGCACCTTATTAGCTCATT 58.794 45.455 12.86 0.00 0.00 2.57
4577 9550 3.627577 CGTGGCACCTTATTAGCTCATTT 59.372 43.478 12.86 0.00 0.00 2.32
4578 9551 4.096382 CGTGGCACCTTATTAGCTCATTTT 59.904 41.667 12.86 0.00 0.00 1.82
4579 9552 5.393027 CGTGGCACCTTATTAGCTCATTTTT 60.393 40.000 12.86 0.00 0.00 1.94
4580 9553 6.036470 GTGGCACCTTATTAGCTCATTTTTC 58.964 40.000 6.29 0.00 0.00 2.29
4581 9554 5.127031 TGGCACCTTATTAGCTCATTTTTCC 59.873 40.000 0.00 0.00 0.00 3.13
4582 9555 5.360999 GGCACCTTATTAGCTCATTTTTCCT 59.639 40.000 0.00 0.00 0.00 3.36
4583 9556 6.127338 GGCACCTTATTAGCTCATTTTTCCTT 60.127 38.462 0.00 0.00 0.00 3.36
4584 9557 6.753744 GCACCTTATTAGCTCATTTTTCCTTG 59.246 38.462 0.00 0.00 0.00 3.61
4585 9558 7.577616 GCACCTTATTAGCTCATTTTTCCTTGT 60.578 37.037 0.00 0.00 0.00 3.16
4586 9559 8.306761 CACCTTATTAGCTCATTTTTCCTTGTT 58.693 33.333 0.00 0.00 0.00 2.83
4587 9560 8.306761 ACCTTATTAGCTCATTTTTCCTTGTTG 58.693 33.333 0.00 0.00 0.00 3.33
4588 9561 7.276438 CCTTATTAGCTCATTTTTCCTTGTTGC 59.724 37.037 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.957168 TCCAATCATTCAAATTTCCAGCCTA 59.043 36.000 0.00 0.00 0.00 3.93
44 45 9.982651 GTGGATGCTCGTATATACCATATATTT 57.017 33.333 7.30 0.00 0.00 1.40
47 48 8.762481 AAGTGGATGCTCGTATATACCATATA 57.238 34.615 7.30 0.00 0.00 0.86
54 115 8.418662 ACAAAGTAAAGTGGATGCTCGTATATA 58.581 33.333 0.00 0.00 0.00 0.86
58 119 4.688879 CACAAAGTAAAGTGGATGCTCGTA 59.311 41.667 0.00 0.00 32.24 3.43
60 121 3.498397 ACACAAAGTAAAGTGGATGCTCG 59.502 43.478 0.00 0.00 39.99 5.03
65 126 5.067283 AGCGAAAACACAAAGTAAAGTGGAT 59.933 36.000 0.00 0.00 39.99 3.41
66 127 4.396790 AGCGAAAACACAAAGTAAAGTGGA 59.603 37.500 0.00 0.00 39.99 4.02
69 130 7.136772 GGAATAGCGAAAACACAAAGTAAAGT 58.863 34.615 0.00 0.00 0.00 2.66
75 136 4.497473 TGGGAATAGCGAAAACACAAAG 57.503 40.909 0.00 0.00 0.00 2.77
94 155 1.529226 TGTATTGCCCTGTCGTTTGG 58.471 50.000 0.00 0.00 0.00 3.28
148 275 6.207221 GGAAGGGCAAGAGTAGTATAGTACTC 59.793 46.154 29.18 29.18 46.47 2.59
149 276 6.069994 GGAAGGGCAAGAGTAGTATAGTACT 58.930 44.000 18.32 18.32 42.68 2.73
150 277 5.832060 TGGAAGGGCAAGAGTAGTATAGTAC 59.168 44.000 9.38 9.38 0.00 2.73
152 279 4.880164 TGGAAGGGCAAGAGTAGTATAGT 58.120 43.478 0.00 0.00 0.00 2.12
153 280 7.540474 TTATGGAAGGGCAAGAGTAGTATAG 57.460 40.000 0.00 0.00 0.00 1.31
154 281 9.784376 ATATTATGGAAGGGCAAGAGTAGTATA 57.216 33.333 0.00 0.00 0.00 1.47
156 283 9.610104 TTATATTATGGAAGGGCAAGAGTAGTA 57.390 33.333 0.00 0.00 0.00 1.82
157 284 8.506196 TTATATTATGGAAGGGCAAGAGTAGT 57.494 34.615 0.00 0.00 0.00 2.73
158 285 8.816894 TCTTATATTATGGAAGGGCAAGAGTAG 58.183 37.037 0.00 0.00 0.00 2.57
159 286 8.736097 TCTTATATTATGGAAGGGCAAGAGTA 57.264 34.615 0.00 0.00 0.00 2.59
160 287 7.633018 TCTTATATTATGGAAGGGCAAGAGT 57.367 36.000 0.00 0.00 0.00 3.24
161 288 6.597280 GCTCTTATATTATGGAAGGGCAAGAG 59.403 42.308 6.28 0.00 44.53 2.85
162 289 6.476378 GCTCTTATATTATGGAAGGGCAAGA 58.524 40.000 6.28 0.00 44.53 3.02
163 290 5.352569 CGCTCTTATATTATGGAAGGGCAAG 59.647 44.000 10.31 0.00 45.26 4.01
164 291 5.221843 ACGCTCTTATATTATGGAAGGGCAA 60.222 40.000 10.31 0.00 45.26 4.52
165 292 4.286032 ACGCTCTTATATTATGGAAGGGCA 59.714 41.667 10.31 0.00 45.26 5.36
166 293 4.833390 ACGCTCTTATATTATGGAAGGGC 58.167 43.478 2.21 2.21 42.22 5.19
167 294 7.745620 AAAACGCTCTTATATTATGGAAGGG 57.254 36.000 0.00 0.00 0.00 3.95
168 295 8.836413 TCAAAAACGCTCTTATATTATGGAAGG 58.164 33.333 0.00 0.00 0.00 3.46
169 296 9.651718 GTCAAAAACGCTCTTATATTATGGAAG 57.348 33.333 0.00 0.00 0.00 3.46
171 298 8.609176 GTGTCAAAAACGCTCTTATATTATGGA 58.391 33.333 0.00 0.00 35.42 3.41
172 299 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
175 302 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
176 303 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
177 304 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
178 305 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
180 307 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
182 309 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
183 310 5.840940 ATACACTAGTGTCAAAAACGCTC 57.159 39.130 31.11 0.00 45.69 5.03
185 312 5.744490 ACAATACACTAGTGTCAAAAACGC 58.256 37.500 31.11 0.00 43.74 4.84
222 349 9.198475 ACTAAGAAATCCTCTCTCCGTTTTATA 57.802 33.333 0.00 0.00 31.02 0.98
223 350 8.080363 ACTAAGAAATCCTCTCTCCGTTTTAT 57.920 34.615 0.00 0.00 31.02 1.40
224 351 7.177921 TGACTAAGAAATCCTCTCTCCGTTTTA 59.822 37.037 0.00 0.00 31.02 1.52
226 353 5.480772 TGACTAAGAAATCCTCTCTCCGTTT 59.519 40.000 0.00 0.00 31.02 3.60
229 356 5.561919 CGATGACTAAGAAATCCTCTCTCCG 60.562 48.000 0.00 0.00 31.02 4.63
230 357 5.768317 CGATGACTAAGAAATCCTCTCTCC 58.232 45.833 0.00 0.00 31.02 3.71
232 359 4.892934 AGCGATGACTAAGAAATCCTCTCT 59.107 41.667 0.00 0.00 31.02 3.10
233 360 5.195001 AGCGATGACTAAGAAATCCTCTC 57.805 43.478 0.00 0.00 31.02 3.20
234 361 6.716934 TTAGCGATGACTAAGAAATCCTCT 57.283 37.500 0.00 0.00 35.13 3.69
250 377 4.103357 GTCACACGACATTACTTAGCGAT 58.897 43.478 0.00 0.00 42.13 4.58
251 378 3.495193 GTCACACGACATTACTTAGCGA 58.505 45.455 0.00 0.00 42.13 4.93
266 393 1.004440 GAGGGCCTCAGTGTCACAC 60.004 63.158 28.55 0.00 34.10 3.82
267 394 2.574018 CGAGGGCCTCAGTGTCACA 61.574 63.158 31.69 0.00 0.00 3.58
268 395 2.262915 CGAGGGCCTCAGTGTCAC 59.737 66.667 31.69 4.37 0.00 3.67
269 396 2.203640 ACGAGGGCCTCAGTGTCA 60.204 61.111 31.69 0.00 0.00 3.58
272 399 1.142748 GATGACGAGGGCCTCAGTG 59.857 63.158 31.69 18.62 0.00 3.66
273 400 0.904865 TTGATGACGAGGGCCTCAGT 60.905 55.000 31.69 27.63 0.00 3.41
274 401 0.460987 GTTGATGACGAGGGCCTCAG 60.461 60.000 31.69 24.88 0.00 3.35
275 402 1.596934 GTTGATGACGAGGGCCTCA 59.403 57.895 31.69 15.28 0.00 3.86
276 403 1.153349 GGTTGATGACGAGGGCCTC 60.153 63.158 24.06 24.06 0.00 4.70
277 404 2.990479 GGTTGATGACGAGGGCCT 59.010 61.111 5.25 5.25 0.00 5.19
278 405 2.511600 CGGTTGATGACGAGGGCC 60.512 66.667 0.00 0.00 0.00 5.80
280 407 2.511600 GGCGGTTGATGACGAGGG 60.512 66.667 0.00 0.00 0.00 4.30
304 670 1.950909 CTTGGGACGGTTTTTGCACTA 59.049 47.619 0.00 0.00 0.00 2.74
305 671 0.744281 CTTGGGACGGTTTTTGCACT 59.256 50.000 0.00 0.00 0.00 4.40
306 672 0.458260 ACTTGGGACGGTTTTTGCAC 59.542 50.000 0.00 0.00 0.00 4.57
307 673 1.187087 AACTTGGGACGGTTTTTGCA 58.813 45.000 0.00 0.00 0.00 4.08
308 674 3.439895 TTAACTTGGGACGGTTTTTGC 57.560 42.857 0.00 0.00 0.00 3.68
309 675 5.460748 GTCATTTAACTTGGGACGGTTTTTG 59.539 40.000 0.00 0.00 0.00 2.44
310 676 5.127356 TGTCATTTAACTTGGGACGGTTTTT 59.873 36.000 0.00 0.00 0.00 1.94
311 677 4.645588 TGTCATTTAACTTGGGACGGTTTT 59.354 37.500 0.00 0.00 0.00 2.43
312 678 4.208746 TGTCATTTAACTTGGGACGGTTT 58.791 39.130 0.00 0.00 0.00 3.27
313 679 3.822940 TGTCATTTAACTTGGGACGGTT 58.177 40.909 0.00 0.00 0.00 4.44
314 680 3.495434 TGTCATTTAACTTGGGACGGT 57.505 42.857 0.00 0.00 0.00 4.83
315 681 3.365969 GCTTGTCATTTAACTTGGGACGG 60.366 47.826 0.00 0.00 0.00 4.79
316 682 3.252215 TGCTTGTCATTTAACTTGGGACG 59.748 43.478 0.00 0.00 0.00 4.79
317 683 4.846779 TGCTTGTCATTTAACTTGGGAC 57.153 40.909 0.00 0.00 0.00 4.46
318 684 5.076182 TCATGCTTGTCATTTAACTTGGGA 58.924 37.500 0.00 0.00 31.79 4.37
321 687 5.290158 GGCATCATGCTTGTCATTTAACTTG 59.710 40.000 10.11 0.00 44.28 3.16
322 688 5.413499 GGCATCATGCTTGTCATTTAACTT 58.587 37.500 10.11 0.00 44.28 2.66
323 689 4.439153 CGGCATCATGCTTGTCATTTAACT 60.439 41.667 10.11 0.00 44.28 2.24
324 690 3.792956 CGGCATCATGCTTGTCATTTAAC 59.207 43.478 10.11 0.00 44.28 2.01
325 691 3.693578 TCGGCATCATGCTTGTCATTTAA 59.306 39.130 10.11 0.00 44.28 1.52
326 692 3.277715 TCGGCATCATGCTTGTCATTTA 58.722 40.909 10.11 0.00 44.28 1.40
327 693 2.093890 TCGGCATCATGCTTGTCATTT 58.906 42.857 10.11 0.00 44.28 2.32
328 694 1.674441 CTCGGCATCATGCTTGTCATT 59.326 47.619 10.11 0.00 44.28 2.57
329 695 1.306148 CTCGGCATCATGCTTGTCAT 58.694 50.000 10.11 0.00 44.28 3.06
331 697 0.745845 ACCTCGGCATCATGCTTGTC 60.746 55.000 10.11 0.00 44.28 3.18
332 698 0.745845 GACCTCGGCATCATGCTTGT 60.746 55.000 10.11 1.58 44.28 3.16
334 700 0.463295 CAGACCTCGGCATCATGCTT 60.463 55.000 10.11 0.00 44.28 3.91
335 701 1.145598 CAGACCTCGGCATCATGCT 59.854 57.895 10.11 0.00 44.28 3.79
336 702 1.153289 ACAGACCTCGGCATCATGC 60.153 57.895 0.00 0.00 44.08 4.06
337 703 1.434622 GCACAGACCTCGGCATCATG 61.435 60.000 0.00 0.00 0.00 3.07
339 705 2.265739 GCACAGACCTCGGCATCA 59.734 61.111 0.00 0.00 0.00 3.07
340 706 2.103042 GTGCACAGACCTCGGCATC 61.103 63.158 13.17 0.00 38.68 3.91
341 707 2.046892 GTGCACAGACCTCGGCAT 60.047 61.111 13.17 0.00 38.68 4.40
350 716 4.980805 GAACCGCCGGTGCACAGA 62.981 66.667 20.43 0.00 35.34 3.41
387 825 3.777925 CACGAACTGCCTTCCGCG 61.778 66.667 0.00 0.00 42.08 6.46
390 828 1.376037 CCCTCACGAACTGCCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
409 847 0.244178 AGTTCTTCTTCGTCGAGCCC 59.756 55.000 0.00 0.00 0.00 5.19
411 849 1.341606 CCAGTTCTTCTTCGTCGAGC 58.658 55.000 0.00 0.00 0.00 5.03
412 850 1.341606 GCCAGTTCTTCTTCGTCGAG 58.658 55.000 0.00 0.00 0.00 4.04
413 851 0.038526 GGCCAGTTCTTCTTCGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
414 852 1.344942 CGGCCAGTTCTTCTTCGTCG 61.345 60.000 2.24 0.00 0.00 5.12
415 853 0.038526 TCGGCCAGTTCTTCTTCGTC 60.039 55.000 2.24 0.00 0.00 4.20
416 854 0.608640 ATCGGCCAGTTCTTCTTCGT 59.391 50.000 2.24 0.00 0.00 3.85
417 855 1.661112 GAATCGGCCAGTTCTTCTTCG 59.339 52.381 2.24 0.00 0.00 3.79
418 856 2.010497 GGAATCGGCCAGTTCTTCTTC 58.990 52.381 14.66 1.03 0.00 2.87
419 857 1.340114 GGGAATCGGCCAGTTCTTCTT 60.340 52.381 14.66 0.00 0.00 2.52
420 858 0.253327 GGGAATCGGCCAGTTCTTCT 59.747 55.000 14.66 0.00 0.00 2.85
421 859 0.748367 GGGGAATCGGCCAGTTCTTC 60.748 60.000 14.66 8.81 0.00 2.87
450 888 8.997621 ATCCACTTCTGATTCAAAATGATTTG 57.002 30.769 0.00 0.00 45.92 2.32
451 889 8.809066 TGATCCACTTCTGATTCAAAATGATTT 58.191 29.630 0.00 0.00 0.00 2.17
454 892 6.151648 GGTGATCCACTTCTGATTCAAAATGA 59.848 38.462 0.00 0.00 34.40 2.57
455 893 6.152323 AGGTGATCCACTTCTGATTCAAAATG 59.848 38.462 0.00 0.00 34.40 2.32
458 896 5.246981 AGGTGATCCACTTCTGATTCAAA 57.753 39.130 0.00 0.00 34.40 2.69
459 897 4.916041 AGGTGATCCACTTCTGATTCAA 57.084 40.909 0.00 0.00 34.40 2.69
460 898 5.485353 ACTTAGGTGATCCACTTCTGATTCA 59.515 40.000 0.00 0.00 34.40 2.57
461 899 5.814705 CACTTAGGTGATCCACTTCTGATTC 59.185 44.000 0.00 0.00 45.61 2.52
462 900 5.485353 TCACTTAGGTGATCCACTTCTGATT 59.515 40.000 3.11 0.00 46.19 2.57
463 901 5.026121 TCACTTAGGTGATCCACTTCTGAT 58.974 41.667 3.11 0.00 46.19 2.90
464 902 4.416516 TCACTTAGGTGATCCACTTCTGA 58.583 43.478 3.11 0.00 46.19 3.27
465 903 4.808414 TCACTTAGGTGATCCACTTCTG 57.192 45.455 3.11 0.00 46.19 3.02
513 1489 7.042321 TGGACTTGTATTTTGTAGTTCACGAAG 60.042 37.037 0.00 0.00 31.96 3.79
520 1496 8.745590 ACTTGTTTGGACTTGTATTTTGTAGTT 58.254 29.630 0.00 0.00 0.00 2.24
525 1501 6.237808 GCACACTTGTTTGGACTTGTATTTTG 60.238 38.462 0.00 0.00 0.00 2.44
528 1504 4.400884 TGCACACTTGTTTGGACTTGTATT 59.599 37.500 0.00 0.00 0.00 1.89
529 1505 3.951037 TGCACACTTGTTTGGACTTGTAT 59.049 39.130 0.00 0.00 0.00 2.29
536 1512 5.587289 GAGTAAAATGCACACTTGTTTGGA 58.413 37.500 0.00 0.00 0.00 3.53
576 1552 1.205893 CTCTGTAGACCAGTGCTTCCC 59.794 57.143 0.00 0.00 42.19 3.97
584 1560 9.790389 CTAGTAATTAACAACTCTGTAGACCAG 57.210 37.037 0.00 0.00 42.97 4.00
628 1604 9.535878 TTAAGAAAAATTTGCGAATAAACTGGT 57.464 25.926 0.00 0.00 0.00 4.00
655 1631 8.057536 TGTTTGTTGTGGACTACAGTATTTTT 57.942 30.769 0.00 0.00 41.10 1.94
656 1632 7.633193 TGTTTGTTGTGGACTACAGTATTTT 57.367 32.000 0.00 0.00 41.10 1.82
657 1633 7.817418 ATGTTTGTTGTGGACTACAGTATTT 57.183 32.000 0.00 0.00 41.10 1.40
658 1634 7.117236 CGTATGTTTGTTGTGGACTACAGTATT 59.883 37.037 0.00 0.00 41.10 1.89
659 1635 6.588756 CGTATGTTTGTTGTGGACTACAGTAT 59.411 38.462 0.00 0.00 41.10 2.12
660 1636 5.921976 CGTATGTTTGTTGTGGACTACAGTA 59.078 40.000 0.00 0.00 41.10 2.74
661 1637 4.748102 CGTATGTTTGTTGTGGACTACAGT 59.252 41.667 0.00 0.00 41.10 3.55
662 1638 4.151689 CCGTATGTTTGTTGTGGACTACAG 59.848 45.833 0.00 0.00 41.10 2.74
663 1639 4.059511 CCGTATGTTTGTTGTGGACTACA 58.940 43.478 0.00 0.00 37.56 2.74
664 1640 3.434299 CCCGTATGTTTGTTGTGGACTAC 59.566 47.826 0.00 0.00 0.00 2.73
665 1641 3.557475 CCCCGTATGTTTGTTGTGGACTA 60.557 47.826 0.00 0.00 0.00 2.59
666 1642 2.500229 CCCGTATGTTTGTTGTGGACT 58.500 47.619 0.00 0.00 0.00 3.85
667 1643 1.538075 CCCCGTATGTTTGTTGTGGAC 59.462 52.381 0.00 0.00 0.00 4.02
668 1644 1.143277 ACCCCGTATGTTTGTTGTGGA 59.857 47.619 0.00 0.00 0.00 4.02
669 1645 1.611519 ACCCCGTATGTTTGTTGTGG 58.388 50.000 0.00 0.00 0.00 4.17
670 1646 3.719173 AAACCCCGTATGTTTGTTGTG 57.281 42.857 0.00 0.00 34.77 3.33
671 1647 4.684877 GAAAAACCCCGTATGTTTGTTGT 58.315 39.130 0.00 0.00 36.14 3.32
672 1648 3.731717 CGAAAAACCCCGTATGTTTGTTG 59.268 43.478 0.00 0.00 36.14 3.33
673 1649 3.796165 GCGAAAAACCCCGTATGTTTGTT 60.796 43.478 0.00 0.00 36.14 2.83
718 3496 2.798847 GTCCTTGTAGTTGTTCGGTCAC 59.201 50.000 0.00 0.00 0.00 3.67
726 3504 1.045407 TGCTCGGTCCTTGTAGTTGT 58.955 50.000 0.00 0.00 0.00 3.32
741 3519 1.738099 ACGCTCAATGACCGTGCTC 60.738 57.895 2.51 0.00 33.46 4.26
970 3756 2.722201 GGACGGGAGCGTGGAAGAT 61.722 63.158 0.00 0.00 0.00 2.40
1050 3854 1.275421 GGGACAGGAAAGGGAGGAGG 61.275 65.000 0.00 0.00 0.00 4.30
1833 4644 2.022129 GAACACCTCGCACTGGTCG 61.022 63.158 0.00 0.00 35.28 4.79
2568 5379 2.045536 CCCTCCAGCTGCTTCACC 60.046 66.667 8.66 0.00 0.00 4.02
3216 6033 3.952508 ACCTGCGCCATGTCCACA 61.953 61.111 4.18 0.00 0.00 4.17
3293 6110 4.073200 GCACCACCTTGCCCATGC 62.073 66.667 0.00 0.00 36.42 4.06
3378 6195 4.295119 GTGGTGGCCGTCGTCACT 62.295 66.667 13.25 0.00 34.57 3.41
3573 6390 5.027737 CGGCAATGTTACATTGTCATGTAC 58.972 41.667 32.60 17.90 44.19 2.90
3596 6413 2.182030 CCGGAGAAGACTGACGCC 59.818 66.667 0.00 0.00 0.00 5.68
3597 6414 2.507324 GCCGGAGAAGACTGACGC 60.507 66.667 5.05 0.00 0.00 5.19
3598 6415 2.202492 CGCCGGAGAAGACTGACG 60.202 66.667 5.05 0.00 0.00 4.35
3600 6417 2.989253 TGCGCCGGAGAAGACTGA 60.989 61.111 10.31 0.00 0.00 3.41
3602 6419 2.992114 ACTGCGCCGGAGAAGACT 60.992 61.111 21.55 0.00 0.00 3.24
3603 6420 2.765250 TTCACTGCGCCGGAGAAGAC 62.765 60.000 21.55 0.00 0.00 3.01
3614 6431 2.679355 TTTCCATCGTTTTCACTGCG 57.321 45.000 0.00 0.00 0.00 5.18
3615 6432 4.088496 CGAATTTTCCATCGTTTTCACTGC 59.912 41.667 0.00 0.00 34.48 4.40
3616 6433 5.729665 CGAATTTTCCATCGTTTTCACTG 57.270 39.130 0.00 0.00 34.48 3.66
3647 6476 2.171725 GCGGTTTCCCTTCGATCCG 61.172 63.158 0.00 0.00 39.68 4.18
3648 6477 2.171725 CGCGGTTTCCCTTCGATCC 61.172 63.158 0.00 0.00 0.00 3.36
3659 6488 1.148157 CTCGATGATCTGCGCGGTTT 61.148 55.000 17.37 5.02 0.00 3.27
3662 6491 3.401411 GCTCGATGATCTGCGCGG 61.401 66.667 10.86 10.86 0.00 6.46
3679 6508 2.233922 ACCCTACCAATTCACTGACTCG 59.766 50.000 0.00 0.00 0.00 4.18
3680 6509 3.600388 CACCCTACCAATTCACTGACTC 58.400 50.000 0.00 0.00 0.00 3.36
3682 6511 2.039879 ACCACCCTACCAATTCACTGAC 59.960 50.000 0.00 0.00 0.00 3.51
3684 6513 2.305927 AGACCACCCTACCAATTCACTG 59.694 50.000 0.00 0.00 0.00 3.66
3687 6516 2.504175 GCTAGACCACCCTACCAATTCA 59.496 50.000 0.00 0.00 0.00 2.57
3690 6519 2.022918 AGAGCTAGACCACCCTACCAAT 60.023 50.000 0.00 0.00 0.00 3.16
3699 6528 2.556622 GCAGATCCTAGAGCTAGACCAC 59.443 54.545 6.11 0.00 35.21 4.16
3700 6529 2.445145 AGCAGATCCTAGAGCTAGACCA 59.555 50.000 6.11 0.00 35.19 4.02
3702 6531 3.255642 CCAAGCAGATCCTAGAGCTAGAC 59.744 52.174 6.11 0.00 36.07 2.59
3703 6532 3.117322 ACCAAGCAGATCCTAGAGCTAGA 60.117 47.826 6.11 0.00 36.07 2.43
3704 6533 3.230134 ACCAAGCAGATCCTAGAGCTAG 58.770 50.000 0.00 0.00 36.07 3.42
3705 6534 3.320610 ACCAAGCAGATCCTAGAGCTA 57.679 47.619 0.00 0.00 36.07 3.32
3706 6535 2.173126 ACCAAGCAGATCCTAGAGCT 57.827 50.000 0.00 0.00 39.37 4.09
3707 6536 2.998316 AACCAAGCAGATCCTAGAGC 57.002 50.000 0.00 0.00 0.00 4.09
3708 6537 4.583871 ACAAAACCAAGCAGATCCTAGAG 58.416 43.478 0.00 0.00 0.00 2.43
3743 6572 3.210528 GGCAGAGCAGCTCCATGC 61.211 66.667 22.71 22.71 46.88 4.06
3745 6574 0.039326 AAAAGGCAGAGCAGCTCCAT 59.961 50.000 19.40 0.00 34.17 3.41
3746 6575 0.892358 CAAAAGGCAGAGCAGCTCCA 60.892 55.000 19.40 0.00 34.17 3.86
3747 6576 0.607489 TCAAAAGGCAGAGCAGCTCC 60.607 55.000 19.40 4.50 34.17 4.70
3748 6577 0.803740 CTCAAAAGGCAGAGCAGCTC 59.196 55.000 15.25 15.25 34.17 4.09
3749 6578 0.399454 TCTCAAAAGGCAGAGCAGCT 59.601 50.000 0.00 0.00 34.17 4.24
3750 6579 1.461559 ATCTCAAAAGGCAGAGCAGC 58.538 50.000 0.00 0.00 0.00 5.25
3751 6580 3.367087 CCAAATCTCAAAAGGCAGAGCAG 60.367 47.826 0.00 0.00 0.00 4.24
3752 6581 2.559668 CCAAATCTCAAAAGGCAGAGCA 59.440 45.455 0.00 0.00 0.00 4.26
3753 6582 2.673326 GCCAAATCTCAAAAGGCAGAGC 60.673 50.000 0.00 0.00 44.59 4.09
3758 6587 2.027837 ACCATGCCAAATCTCAAAAGGC 60.028 45.455 0.00 0.00 45.41 4.35
3759 6588 3.967332 ACCATGCCAAATCTCAAAAGG 57.033 42.857 0.00 0.00 0.00 3.11
3762 6591 4.151121 TCTCAACCATGCCAAATCTCAAA 58.849 39.130 0.00 0.00 0.00 2.69
3767 6605 2.231964 TGCTTCTCAACCATGCCAAATC 59.768 45.455 0.00 0.00 0.00 2.17
3776 6614 1.913778 ACATGCATGCTTCTCAACCA 58.086 45.000 26.53 0.00 0.00 3.67
3777 6615 3.379372 ACATACATGCATGCTTCTCAACC 59.621 43.478 26.53 0.00 0.00 3.77
3778 6616 4.348656 CACATACATGCATGCTTCTCAAC 58.651 43.478 26.53 0.00 0.00 3.18
3781 6619 2.996155 GCACATACATGCATGCTTCTC 58.004 47.619 26.53 8.01 45.39 2.87
3791 6629 3.065786 GTGGTTCATCTGGCACATACATG 59.934 47.826 0.00 0.00 38.20 3.21
3801 6639 6.331369 ACTTACAAATTGTGGTTCATCTGG 57.669 37.500 9.15 0.00 0.00 3.86
3817 6655 8.177663 CGTTCGGTCTAGTTCTATTACTTACAA 58.822 37.037 0.00 0.00 0.00 2.41
3845 6928 8.705048 TGTACATGTGCAAATTACGATTAGTA 57.295 30.769 14.70 0.00 0.00 1.82
3847 6930 8.785101 GTTTGTACATGTGCAAATTACGATTAG 58.215 33.333 34.48 0.00 44.51 1.73
3849 6932 7.142021 TGTTTGTACATGTGCAAATTACGATT 58.858 30.769 34.48 0.00 44.51 3.34
3859 6942 7.783090 AATTTGAATTGTTTGTACATGTGCA 57.217 28.000 13.02 13.02 33.44 4.57
3860 6943 8.333908 TCAAATTTGAATTGTTTGTACATGTGC 58.666 29.630 18.45 8.01 35.09 4.57
3861 6944 9.852481 CTCAAATTTGAATTGTTTGTACATGTG 57.148 29.630 20.82 0.72 36.64 3.21
3862 6945 9.044150 CCTCAAATTTGAATTGTTTGTACATGT 57.956 29.630 20.82 2.69 36.64 3.21
3863 6946 8.011106 GCCTCAAATTTGAATTGTTTGTACATG 58.989 33.333 20.82 5.08 36.64 3.21
3864 6947 7.714377 TGCCTCAAATTTGAATTGTTTGTACAT 59.286 29.630 20.82 0.00 36.64 2.29
3873 6956 7.816031 ACAATACTCTGCCTCAAATTTGAATTG 59.184 33.333 23.58 23.58 36.64 2.32
3898 6984 2.618709 CAAATTTCGCCCCTCATCCTAC 59.381 50.000 0.00 0.00 0.00 3.18
3908 6994 2.298411 ATGCATCACAAATTTCGCCC 57.702 45.000 0.00 0.00 0.00 6.13
3914 7000 3.866910 GCATCCGAAATGCATCACAAATT 59.133 39.130 15.25 0.00 44.00 1.82
3952 8878 0.877071 ACGAATCAAGCAAGCACCAG 59.123 50.000 0.00 0.00 0.00 4.00
3961 8887 6.291067 TGACAATCATCATACGAATCAAGC 57.709 37.500 0.00 0.00 0.00 4.01
3963 8889 9.546428 ACTAATGACAATCATCATACGAATCAA 57.454 29.630 0.00 0.00 38.40 2.57
3971 8897 9.914131 GCACTAGTACTAATGACAATCATCATA 57.086 33.333 15.29 0.00 38.40 2.15
3972 8898 7.875041 GGCACTAGTACTAATGACAATCATCAT 59.125 37.037 15.29 0.00 41.20 2.45
3973 8899 7.069950 AGGCACTAGTACTAATGACAATCATCA 59.930 37.037 18.89 0.00 33.56 3.07
3985 8936 6.351541 CCATAACACCAAGGCACTAGTACTAA 60.352 42.308 3.76 0.00 38.49 2.24
3991 8942 2.017049 GCCATAACACCAAGGCACTAG 58.983 52.381 0.00 0.00 46.26 2.57
3992 8943 2.122783 GCCATAACACCAAGGCACTA 57.877 50.000 0.00 0.00 46.26 2.74
4005 8956 1.255882 CCAAACTGCCAGTGCCATAA 58.744 50.000 0.00 0.00 36.33 1.90
4012 8963 0.537371 GTAGGTGCCAAACTGCCAGT 60.537 55.000 0.00 0.00 0.00 4.00
4014 8965 1.228429 GGTAGGTGCCAAACTGCCA 60.228 57.895 0.83 0.00 39.04 4.92
4015 8966 1.228429 TGGTAGGTGCCAAACTGCC 60.228 57.895 0.00 0.00 39.58 4.85
4016 8967 0.537371 AGTGGTAGGTGCCAAACTGC 60.537 55.000 0.00 0.00 40.68 4.40
4017 8968 1.238439 CAGTGGTAGGTGCCAAACTG 58.762 55.000 0.00 0.00 40.68 3.16
4018 8969 0.110486 CCAGTGGTAGGTGCCAAACT 59.890 55.000 0.00 0.00 40.68 2.66
4020 8971 1.228429 GCCAGTGGTAGGTGCCAAA 60.228 57.895 11.74 0.00 40.68 3.28
4021 8972 2.434331 GCCAGTGGTAGGTGCCAA 59.566 61.111 11.74 0.00 40.68 4.52
4025 8976 1.003355 CCAGTGCCAGTGGTAGGTG 60.003 63.158 10.59 6.79 33.97 4.00
4026 8977 2.224159 CCCAGTGCCAGTGGTAGGT 61.224 63.158 17.19 0.00 36.97 3.08
4027 8978 2.224159 ACCCAGTGCCAGTGGTAGG 61.224 63.158 17.19 6.76 36.97 3.18
4029 8980 1.768482 ACACCCAGTGCCAGTGGTA 60.768 57.895 17.19 2.55 36.97 3.25
4031 8982 2.595463 CACACCCAGTGCCAGTGG 60.595 66.667 11.86 11.86 42.15 4.00
4039 8990 1.904865 CAATGCAGCCACACCCAGT 60.905 57.895 0.00 0.00 0.00 4.00
4040 8991 2.642254 CCAATGCAGCCACACCCAG 61.642 63.158 0.00 0.00 0.00 4.45
4041 8992 2.601067 CCAATGCAGCCACACCCA 60.601 61.111 0.00 0.00 0.00 4.51
4042 8993 2.283101 TCCAATGCAGCCACACCC 60.283 61.111 0.00 0.00 0.00 4.61
4043 8994 2.964978 GTCCAATGCAGCCACACC 59.035 61.111 0.00 0.00 0.00 4.16
4044 8995 2.562912 CGTCCAATGCAGCCACAC 59.437 61.111 0.00 0.00 0.00 3.82
4045 8996 2.672651 CCGTCCAATGCAGCCACA 60.673 61.111 0.00 0.00 0.00 4.17
4046 8997 2.359850 TCCGTCCAATGCAGCCAC 60.360 61.111 0.00 0.00 0.00 5.01
4047 8998 2.359850 GTCCGTCCAATGCAGCCA 60.360 61.111 0.00 0.00 0.00 4.75
4048 8999 3.499737 CGTCCGTCCAATGCAGCC 61.500 66.667 0.00 0.00 0.00 4.85
4049 9000 2.742372 ACGTCCGTCCAATGCAGC 60.742 61.111 0.00 0.00 0.00 5.25
4050 9001 2.390599 CCACGTCCGTCCAATGCAG 61.391 63.158 0.00 0.00 0.00 4.41
4051 9002 2.358125 CCACGTCCGTCCAATGCA 60.358 61.111 0.00 0.00 0.00 3.96
4052 9003 3.124921 CCCACGTCCGTCCAATGC 61.125 66.667 0.00 0.00 0.00 3.56
4053 9004 2.032634 CACCCACGTCCGTCCAATG 61.033 63.158 0.00 0.00 0.00 2.82
4054 9005 2.345991 CACCCACGTCCGTCCAAT 59.654 61.111 0.00 0.00 0.00 3.16
4072 9023 1.104577 TGAAAACGGAACCCTGCACC 61.105 55.000 0.00 0.00 0.00 5.01
4073 9024 0.310854 CTGAAAACGGAACCCTGCAC 59.689 55.000 0.00 0.00 0.00 4.57
4074 9025 1.452145 GCTGAAAACGGAACCCTGCA 61.452 55.000 0.00 0.00 0.00 4.41
4075 9026 1.285950 GCTGAAAACGGAACCCTGC 59.714 57.895 0.00 0.00 0.00 4.85
4079 9030 1.594331 AGTCTGCTGAAAACGGAACC 58.406 50.000 0.00 0.00 0.00 3.62
4081 9032 2.612212 GACAAGTCTGCTGAAAACGGAA 59.388 45.455 0.00 0.00 0.00 4.30
4082 9033 2.210116 GACAAGTCTGCTGAAAACGGA 58.790 47.619 0.00 0.00 0.00 4.69
4083 9034 1.264288 GGACAAGTCTGCTGAAAACGG 59.736 52.381 0.00 0.00 0.00 4.44
4084 9035 1.939934 TGGACAAGTCTGCTGAAAACG 59.060 47.619 0.00 0.00 0.00 3.60
4085 9036 3.565482 TGATGGACAAGTCTGCTGAAAAC 59.435 43.478 0.00 0.00 0.00 2.43
4086 9037 3.819368 TGATGGACAAGTCTGCTGAAAA 58.181 40.909 0.00 0.00 0.00 2.29
4087 9038 3.490439 TGATGGACAAGTCTGCTGAAA 57.510 42.857 0.00 0.00 0.00 2.69
4088 9039 3.141398 GTTGATGGACAAGTCTGCTGAA 58.859 45.455 0.00 0.00 39.30 3.02
4089 9040 2.369860 AGTTGATGGACAAGTCTGCTGA 59.630 45.455 0.00 0.00 37.58 4.26
4090 9041 2.775890 AGTTGATGGACAAGTCTGCTG 58.224 47.619 0.00 0.00 37.58 4.41
4091 9042 3.144506 CAAGTTGATGGACAAGTCTGCT 58.855 45.455 0.00 0.00 40.75 4.24
4098 9049 4.704540 ACACTTGTTCAAGTTGATGGACAA 59.295 37.500 16.77 16.77 44.55 3.18
4102 9053 3.181488 TGCACACTTGTTCAAGTTGATGG 60.181 43.478 14.43 6.88 0.00 3.51
4131 9082 3.055240 GGGCAATTCATCCATTCAACCAA 60.055 43.478 0.00 0.00 0.00 3.67
4134 9085 2.158914 GGGGGCAATTCATCCATTCAAC 60.159 50.000 0.00 0.00 0.00 3.18
4135 9086 2.117865 GGGGGCAATTCATCCATTCAA 58.882 47.619 0.00 0.00 0.00 2.69
4141 9092 1.612395 TTTGCGGGGGCAATTCATCC 61.612 55.000 2.00 0.00 0.00 3.51
4143 9094 0.689623 TTTTTGCGGGGGCAATTCAT 59.310 45.000 2.00 0.00 0.00 2.57
4144 9095 2.136791 TTTTTGCGGGGGCAATTCA 58.863 47.368 2.00 0.00 0.00 2.57
4162 9113 7.175467 GGCAATTCATCCATTCTTTTCCTTTTT 59.825 33.333 0.00 0.00 0.00 1.94
4163 9114 6.656270 GGCAATTCATCCATTCTTTTCCTTTT 59.344 34.615 0.00 0.00 0.00 2.27
4164 9115 6.175471 GGCAATTCATCCATTCTTTTCCTTT 58.825 36.000 0.00 0.00 0.00 3.11
4165 9116 5.248934 TGGCAATTCATCCATTCTTTTCCTT 59.751 36.000 0.00 0.00 0.00 3.36
4166 9117 4.778958 TGGCAATTCATCCATTCTTTTCCT 59.221 37.500 0.00 0.00 0.00 3.36
4167 9118 5.088680 TGGCAATTCATCCATTCTTTTCC 57.911 39.130 0.00 0.00 0.00 3.13
4168 9119 4.569564 GCTGGCAATTCATCCATTCTTTTC 59.430 41.667 0.00 0.00 0.00 2.29
4169 9120 4.020039 TGCTGGCAATTCATCCATTCTTTT 60.020 37.500 0.00 0.00 0.00 2.27
4170 9121 3.516300 TGCTGGCAATTCATCCATTCTTT 59.484 39.130 0.00 0.00 0.00 2.52
4171 9122 3.101437 TGCTGGCAATTCATCCATTCTT 58.899 40.909 0.00 0.00 0.00 2.52
4172 9123 2.429610 GTGCTGGCAATTCATCCATTCT 59.570 45.455 0.00 0.00 0.00 2.40
4173 9124 2.166870 TGTGCTGGCAATTCATCCATTC 59.833 45.455 0.00 0.00 0.00 2.67
4174 9125 2.093869 GTGTGCTGGCAATTCATCCATT 60.094 45.455 0.00 0.00 0.00 3.16
4175 9126 1.479323 GTGTGCTGGCAATTCATCCAT 59.521 47.619 0.00 0.00 0.00 3.41
4176 9127 0.889994 GTGTGCTGGCAATTCATCCA 59.110 50.000 0.00 0.00 0.00 3.41
4177 9128 0.174162 GGTGTGCTGGCAATTCATCC 59.826 55.000 0.00 0.00 0.00 3.51
4178 9129 0.889994 TGGTGTGCTGGCAATTCATC 59.110 50.000 0.00 0.00 0.00 2.92
4181 9132 0.319813 GGTTGGTGTGCTGGCAATTC 60.320 55.000 0.00 0.00 0.00 2.17
4184 9135 2.043551 TGGTTGGTGTGCTGGCAA 60.044 55.556 0.00 0.00 0.00 4.52
4187 9138 2.253758 CGTCTGGTTGGTGTGCTGG 61.254 63.158 0.00 0.00 0.00 4.85
4190 9141 0.531974 TTCTCGTCTGGTTGGTGTGC 60.532 55.000 0.00 0.00 0.00 4.57
4198 9149 1.137872 GATGCAGGATTCTCGTCTGGT 59.862 52.381 0.00 0.00 0.00 4.00
4202 9153 2.543012 CACATGATGCAGGATTCTCGTC 59.457 50.000 0.00 0.00 0.00 4.20
4204 9155 2.543012 GACACATGATGCAGGATTCTCG 59.457 50.000 0.00 0.00 0.00 4.04
4242 9198 3.885724 TGCTTGTCCTCGTAATCATCA 57.114 42.857 0.00 0.00 0.00 3.07
4244 9200 3.873361 CACATGCTTGTCCTCGTAATCAT 59.127 43.478 1.56 0.00 32.34 2.45
4249 9205 2.233676 ACATCACATGCTTGTCCTCGTA 59.766 45.455 1.56 0.00 32.34 3.43
4251 9207 1.395954 CACATCACATGCTTGTCCTCG 59.604 52.381 1.56 0.00 32.34 4.63
4252 9208 1.741706 CCACATCACATGCTTGTCCTC 59.258 52.381 1.56 0.00 32.34 3.71
4253 9209 1.830279 CCACATCACATGCTTGTCCT 58.170 50.000 1.56 0.00 32.34 3.85
4255 9211 1.135489 CAGCCACATCACATGCTTGTC 60.135 52.381 1.56 0.00 32.34 3.18
4258 9214 1.460504 CTCAGCCACATCACATGCTT 58.539 50.000 0.00 0.00 30.08 3.91
4259 9215 0.393944 CCTCAGCCACATCACATGCT 60.394 55.000 0.00 0.00 33.52 3.79
4261 9217 1.741706 GAACCTCAGCCACATCACATG 59.258 52.381 0.00 0.00 0.00 3.21
4262 9218 1.676916 CGAACCTCAGCCACATCACAT 60.677 52.381 0.00 0.00 0.00 3.21
4263 9219 0.320683 CGAACCTCAGCCACATCACA 60.321 55.000 0.00 0.00 0.00 3.58
4264 9220 0.320771 ACGAACCTCAGCCACATCAC 60.321 55.000 0.00 0.00 0.00 3.06
4266 9222 0.320771 ACACGAACCTCAGCCACATC 60.321 55.000 0.00 0.00 0.00 3.06
4267 9223 0.108585 AACACGAACCTCAGCCACAT 59.891 50.000 0.00 0.00 0.00 3.21
4268 9224 0.107410 AAACACGAACCTCAGCCACA 60.107 50.000 0.00 0.00 0.00 4.17
4269 9225 1.873698 TAAACACGAACCTCAGCCAC 58.126 50.000 0.00 0.00 0.00 5.01
4271 9227 2.414161 GCATTAAACACGAACCTCAGCC 60.414 50.000 0.00 0.00 0.00 4.85
4272 9228 2.484264 AGCATTAAACACGAACCTCAGC 59.516 45.455 0.00 0.00 0.00 4.26
4273 9229 4.466828 CAAGCATTAAACACGAACCTCAG 58.533 43.478 0.00 0.00 0.00 3.35
4275 9231 3.252458 ACCAAGCATTAAACACGAACCTC 59.748 43.478 0.00 0.00 0.00 3.85
4277 9233 3.636282 ACCAAGCATTAAACACGAACC 57.364 42.857 0.00 0.00 0.00 3.62
4278 9234 3.978855 GGAACCAAGCATTAAACACGAAC 59.021 43.478 0.00 0.00 0.00 3.95
4279 9235 3.886505 AGGAACCAAGCATTAAACACGAA 59.113 39.130 0.00 0.00 0.00 3.85
4280 9236 3.252215 CAGGAACCAAGCATTAAACACGA 59.748 43.478 0.00 0.00 0.00 4.35
4281 9237 3.564511 CAGGAACCAAGCATTAAACACG 58.435 45.455 0.00 0.00 0.00 4.49
4282 9238 3.572255 TCCAGGAACCAAGCATTAAACAC 59.428 43.478 0.00 0.00 0.00 3.32
4283 9239 3.838565 TCCAGGAACCAAGCATTAAACA 58.161 40.909 0.00 0.00 0.00 2.83
4286 9242 4.219115 TGTTTCCAGGAACCAAGCATTAA 58.781 39.130 0.00 0.00 0.00 1.40
4289 9245 2.242043 CTGTTTCCAGGAACCAAGCAT 58.758 47.619 0.00 0.00 34.90 3.79
4290 9246 1.691196 CTGTTTCCAGGAACCAAGCA 58.309 50.000 0.00 0.00 34.90 3.91
4291 9247 0.315251 GCTGTTTCCAGGAACCAAGC 59.685 55.000 0.00 7.74 39.22 4.01
4292 9248 1.610522 CAGCTGTTTCCAGGAACCAAG 59.389 52.381 5.25 0.99 39.22 3.61
4293 9249 1.691196 CAGCTGTTTCCAGGAACCAA 58.309 50.000 5.25 0.00 39.22 3.67
4294 9250 0.823356 GCAGCTGTTTCCAGGAACCA 60.823 55.000 16.64 0.00 39.22 3.67
4296 9252 0.877743 GAGCAGCTGTTTCCAGGAAC 59.122 55.000 16.64 0.00 39.22 3.62
4297 9253 0.767375 AGAGCAGCTGTTTCCAGGAA 59.233 50.000 16.64 0.00 39.22 3.36
4298 9254 0.035881 CAGAGCAGCTGTTTCCAGGA 59.964 55.000 16.64 0.00 39.85 3.86
4299 9255 1.584380 GCAGAGCAGCTGTTTCCAGG 61.584 60.000 16.64 7.55 46.62 4.45
4301 9257 1.962822 CGCAGAGCAGCTGTTTCCA 60.963 57.895 16.64 0.00 46.62 3.53
4302 9258 0.670546 TACGCAGAGCAGCTGTTTCC 60.671 55.000 16.64 0.00 46.62 3.13
4303 9259 0.440371 GTACGCAGAGCAGCTGTTTC 59.560 55.000 16.64 13.41 46.62 2.78
4304 9260 0.034059 AGTACGCAGAGCAGCTGTTT 59.966 50.000 16.64 3.84 46.62 2.83
4305 9261 0.668706 CAGTACGCAGAGCAGCTGTT 60.669 55.000 16.64 9.79 46.62 3.16
4306 9262 1.080230 CAGTACGCAGAGCAGCTGT 60.080 57.895 16.64 0.00 46.62 4.40
4308 9264 1.214062 GACAGTACGCAGAGCAGCT 59.786 57.895 0.00 0.00 0.00 4.24
4310 9266 4.063709 CGACAGTACGCAGAGCAG 57.936 61.111 0.00 0.00 0.00 4.24
4318 9274 3.678717 CTCCACCGGCGACAGTACG 62.679 68.421 9.30 0.00 0.00 3.67
4319 9275 2.181021 CTCCACCGGCGACAGTAC 59.819 66.667 9.30 0.00 0.00 2.73
4320 9276 2.034532 TCTCCACCGGCGACAGTA 59.965 61.111 9.30 0.00 0.00 2.74
4321 9277 3.374402 CTCTCCACCGGCGACAGT 61.374 66.667 9.30 0.00 0.00 3.55
4323 9279 3.062466 CTCTCTCCACCGGCGACA 61.062 66.667 9.30 0.00 0.00 4.35
4324 9280 2.750637 TCTCTCTCCACCGGCGAC 60.751 66.667 9.30 0.00 0.00 5.19
4326 9282 4.200283 GCTCTCTCTCCACCGGCG 62.200 72.222 0.00 0.00 0.00 6.46
4327 9283 3.844090 GGCTCTCTCTCCACCGGC 61.844 72.222 0.00 0.00 0.00 6.13
4328 9284 3.522731 CGGCTCTCTCTCCACCGG 61.523 72.222 0.00 0.00 40.18 5.28
4329 9285 3.522731 CCGGCTCTCTCTCCACCG 61.523 72.222 0.00 0.00 43.44 4.94
4333 9289 2.520741 CTCCCCGGCTCTCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
4335 9291 3.749870 AGCTCCCCGGCTCTCTCT 61.750 66.667 0.00 0.00 38.24 3.10
4341 9297 2.841988 GATCTGAGCTCCCCGGCT 60.842 66.667 12.15 0.00 46.11 5.52
4342 9298 3.934962 GGATCTGAGCTCCCCGGC 61.935 72.222 12.15 0.00 0.00 6.13
4344 9300 1.760086 AGTGGATCTGAGCTCCCCG 60.760 63.158 12.15 0.00 31.32 5.73
4345 9301 1.828768 CAGTGGATCTGAGCTCCCC 59.171 63.158 12.15 7.86 46.27 4.81
4346 9302 1.145819 GCAGTGGATCTGAGCTCCC 59.854 63.158 12.15 5.46 46.27 4.30
4348 9304 1.227205 CGGCAGTGGATCTGAGCTC 60.227 63.158 6.82 6.82 46.27 4.09
4365 9338 1.717937 CAATCAAGCCGAGAAGCCG 59.282 57.895 0.00 0.00 0.00 5.52
4366 9339 1.028868 AGCAATCAAGCCGAGAAGCC 61.029 55.000 0.00 0.00 34.23 4.35
4367 9340 0.098376 CAGCAATCAAGCCGAGAAGC 59.902 55.000 0.00 0.00 34.23 3.86
4368 9341 0.731417 CCAGCAATCAAGCCGAGAAG 59.269 55.000 0.00 0.00 34.23 2.85
4369 9342 0.677731 CCCAGCAATCAAGCCGAGAA 60.678 55.000 0.00 0.00 34.23 2.87
4371 9344 2.117156 CCCCAGCAATCAAGCCGAG 61.117 63.158 0.00 0.00 34.23 4.63
4372 9345 2.045045 CCCCAGCAATCAAGCCGA 60.045 61.111 0.00 0.00 34.23 5.54
4373 9346 1.535204 AAACCCCAGCAATCAAGCCG 61.535 55.000 0.00 0.00 34.23 5.52
4374 9347 1.555967 TAAACCCCAGCAATCAAGCC 58.444 50.000 0.00 0.00 34.23 4.35
4375 9348 3.893326 ATTAAACCCCAGCAATCAAGC 57.107 42.857 0.00 0.00 0.00 4.01
4406 9379 7.767659 CCATCTGATGACAAGATTTCTGTCTTA 59.232 37.037 18.92 0.00 36.33 2.10
4407 9380 6.598457 CCATCTGATGACAAGATTTCTGTCTT 59.402 38.462 18.92 0.00 38.95 3.01
4411 9384 6.754702 AACCATCTGATGACAAGATTTCTG 57.245 37.500 18.92 0.45 0.00 3.02
4417 9390 4.271696 ACGAAACCATCTGATGACAAGA 57.728 40.909 18.92 0.00 0.00 3.02
4418 9391 5.062683 CACTACGAAACCATCTGATGACAAG 59.937 44.000 18.92 4.78 0.00 3.16
4419 9392 4.929211 CACTACGAAACCATCTGATGACAA 59.071 41.667 18.92 0.00 0.00 3.18
4428 9401 4.184079 ACCACTACACTACGAAACCATC 57.816 45.455 0.00 0.00 0.00 3.51
4429 9402 4.612264 AACCACTACACTACGAAACCAT 57.388 40.909 0.00 0.00 0.00 3.55
4530 9503 9.638300 CGTACGTACTAGTTATTACTACAAAGG 57.362 37.037 22.55 0.00 35.78 3.11
4532 9505 9.967245 CACGTACGTACTAGTTATTACTACAAA 57.033 33.333 22.34 0.00 35.78 2.83
4533 9506 8.600625 CCACGTACGTACTAGTTATTACTACAA 58.399 37.037 22.34 0.00 35.78 2.41
4534 9507 7.254319 GCCACGTACGTACTAGTTATTACTACA 60.254 40.741 22.34 0.00 35.78 2.74
4535 9508 7.064064 GCCACGTACGTACTAGTTATTACTAC 58.936 42.308 22.34 0.00 35.78 2.73
4536 9509 6.759356 TGCCACGTACGTACTAGTTATTACTA 59.241 38.462 22.34 0.00 35.78 1.82
4537 9510 5.584649 TGCCACGTACGTACTAGTTATTACT 59.415 40.000 22.34 0.00 38.44 2.24
4538 9511 5.677178 GTGCCACGTACGTACTAGTTATTAC 59.323 44.000 22.34 4.41 0.00 1.89
4539 9512 5.220777 GGTGCCACGTACGTACTAGTTATTA 60.221 44.000 22.34 0.00 0.00 0.98
4540 9513 4.438744 GGTGCCACGTACGTACTAGTTATT 60.439 45.833 22.34 0.00 0.00 1.40
4541 9514 3.065371 GGTGCCACGTACGTACTAGTTAT 59.935 47.826 22.34 0.00 0.00 1.89
4542 9515 2.418628 GGTGCCACGTACGTACTAGTTA 59.581 50.000 22.34 4.67 0.00 2.24
4543 9516 1.200020 GGTGCCACGTACGTACTAGTT 59.800 52.381 22.34 2.49 0.00 2.24
4544 9517 0.804989 GGTGCCACGTACGTACTAGT 59.195 55.000 22.34 11.79 0.00 2.57
4545 9518 1.089920 AGGTGCCACGTACGTACTAG 58.910 55.000 22.34 14.32 0.00 2.57
4546 9519 1.533625 AAGGTGCCACGTACGTACTA 58.466 50.000 22.34 7.08 0.00 1.82
4547 9520 1.533625 TAAGGTGCCACGTACGTACT 58.466 50.000 22.34 11.25 0.00 2.73
4548 9521 2.566952 ATAAGGTGCCACGTACGTAC 57.433 50.000 22.34 15.71 0.00 3.67
4549 9522 3.489059 GCTAATAAGGTGCCACGTACGTA 60.489 47.826 22.34 2.28 0.00 3.57
4550 9523 2.736400 GCTAATAAGGTGCCACGTACGT 60.736 50.000 16.72 16.72 0.00 3.57
4551 9524 1.856597 GCTAATAAGGTGCCACGTACG 59.143 52.381 15.01 15.01 0.00 3.67
4552 9525 3.121544 GAGCTAATAAGGTGCCACGTAC 58.878 50.000 0.00 0.00 32.30 3.67
4553 9526 2.761767 TGAGCTAATAAGGTGCCACGTA 59.238 45.455 0.00 0.00 32.30 3.57
4554 9527 1.553248 TGAGCTAATAAGGTGCCACGT 59.447 47.619 0.00 0.00 32.30 4.49
4555 9528 2.309528 TGAGCTAATAAGGTGCCACG 57.690 50.000 0.00 0.00 32.30 4.94
4556 9529 5.582689 AAAATGAGCTAATAAGGTGCCAC 57.417 39.130 0.00 0.00 32.30 5.01
4557 9530 5.127031 GGAAAAATGAGCTAATAAGGTGCCA 59.873 40.000 0.00 0.00 32.30 4.92
4558 9531 5.360999 AGGAAAAATGAGCTAATAAGGTGCC 59.639 40.000 0.00 0.00 32.30 5.01
4559 9532 6.456795 AGGAAAAATGAGCTAATAAGGTGC 57.543 37.500 0.00 0.00 32.30 5.01
4560 9533 7.830739 ACAAGGAAAAATGAGCTAATAAGGTG 58.169 34.615 0.00 0.00 32.30 4.00
4561 9534 8.306761 CAACAAGGAAAAATGAGCTAATAAGGT 58.693 33.333 0.00 0.00 35.73 3.50
4562 9535 7.276438 GCAACAAGGAAAAATGAGCTAATAAGG 59.724 37.037 0.00 0.00 0.00 2.69
4563 9536 8.177980 GCAACAAGGAAAAATGAGCTAATAAG 57.822 34.615 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.