Multiple sequence alignment - TraesCS5D01G518900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G518900 chr5D 100.000 4070 0 0 1 4070 539985754 539981685 0.000000e+00 7516.0
1 TraesCS5D01G518900 chr5D 80.476 1219 177 34 1803 2998 539976533 539975353 0.000000e+00 876.0
2 TraesCS5D01G518900 chr5D 85.697 825 95 17 966 1787 539977387 539976583 0.000000e+00 848.0
3 TraesCS5D01G518900 chr5D 98.758 161 2 0 3910 4070 539974159 539973999 1.850000e-73 287.0
4 TraesCS5D01G518900 chr5D 86.667 150 16 4 2829 2976 437010670 437010817 3.260000e-36 163.0
5 TraesCS5D01G518900 chr5B 85.651 2711 293 48 912 3579 682196966 682194309 0.000000e+00 2763.0
6 TraesCS5D01G518900 chr5B 80.443 1851 246 56 1795 3579 682186060 682184260 0.000000e+00 1306.0
7 TraesCS5D01G518900 chr5B 80.821 1705 228 32 1800 3456 682953984 682952331 0.000000e+00 1245.0
8 TraesCS5D01G518900 chr5B 84.995 953 106 24 842 1787 682954949 682954027 0.000000e+00 933.0
9 TraesCS5D01G518900 chr5B 86.778 779 85 14 966 1732 682186928 682186156 0.000000e+00 852.0
10 TraesCS5D01G518900 chr5B 88.158 684 44 12 214 865 682197649 682196971 0.000000e+00 780.0
11 TraesCS5D01G518900 chr5B 90.323 248 19 3 3660 3904 682184262 682184017 1.830000e-83 320.0
12 TraesCS5D01G518900 chr5B 89.404 151 16 0 3920 4070 682184067 682183917 1.490000e-44 191.0
13 TraesCS5D01G518900 chr5B 84.848 132 20 0 3919 4050 696703911 696704042 2.550000e-27 134.0
14 TraesCS5D01G518900 chr5B 97.222 36 1 0 3636 3671 562978846 562978881 1.220000e-05 62.1
15 TraesCS5D01G518900 chr5B 97.222 36 1 0 2 37 682197676 682197641 1.220000e-05 62.1
16 TraesCS5D01G518900 chr4A 82.028 1213 160 32 1800 2998 627822661 627821493 0.000000e+00 979.0
17 TraesCS5D01G518900 chr4A 88.184 804 83 8 966 1768 627823515 627822723 0.000000e+00 948.0
18 TraesCS5D01G518900 chr4A 86.528 579 59 7 1021 1594 627917822 627917258 1.610000e-173 619.0
19 TraesCS5D01G518900 chr4A 81.622 789 78 28 2840 3579 627905361 627904591 3.500000e-165 592.0
20 TraesCS5D01G518900 chr4A 84.718 301 16 3 295 566 627918845 627918546 1.440000e-69 274.0
21 TraesCS5D01G518900 chr4A 88.889 189 20 1 3716 3904 627904351 627904164 8.800000e-57 231.0
22 TraesCS5D01G518900 chr4A 94.118 119 7 0 3952 4070 627820602 627820484 8.990000e-42 182.0
23 TraesCS5D01G518900 chr4A 92.105 114 9 0 3791 3904 627820697 627820584 1.170000e-35 161.0
24 TraesCS5D01G518900 chr4A 83.529 170 25 2 3410 3579 627821018 627820852 5.450000e-34 156.0
25 TraesCS5D01G518900 chr4A 81.921 177 29 3 2822 2996 602893186 602893011 3.280000e-31 147.0
26 TraesCS5D01G518900 chr4A 83.333 132 22 0 3919 4050 614577106 614577237 5.520000e-24 122.0
27 TraesCS5D01G518900 chr4A 95.890 73 1 1 3660 3732 627904593 627904523 2.570000e-22 117.0
28 TraesCS5D01G518900 chr4A 83.607 61 8 2 3607 3666 737224580 737224521 5.680000e-04 56.5
29 TraesCS5D01G518900 chr7B 91.713 181 13 2 34 213 277651646 277651825 2.430000e-62 250.0
30 TraesCS5D01G518900 chr7B 87.255 204 20 5 25 223 74193691 74193893 1.140000e-55 228.0
31 TraesCS5D01G518900 chr7B 85.000 80 9 3 3588 3666 716298827 716298904 1.210000e-10 78.7
32 TraesCS5D01G518900 chr7B 90.244 41 4 0 3626 3666 11250986 11250946 2.000000e-03 54.7
33 TraesCS5D01G518900 chr7D 91.713 181 12 1 37 214 75800670 75800850 8.740000e-62 248.0
34 TraesCS5D01G518900 chr1A 89.691 194 14 5 33 221 581544078 581543886 4.060000e-60 243.0
35 TraesCS5D01G518900 chr3A 89.583 192 16 4 38 227 674733993 674734182 1.460000e-59 241.0
36 TraesCS5D01G518900 chr3A 88.889 189 19 2 31 219 561038732 561038546 8.800000e-57 231.0
37 TraesCS5D01G518900 chr7A 87.745 204 15 6 28 221 723355848 723356051 3.160000e-56 230.0
38 TraesCS5D01G518900 chr6A 86.667 210 20 8 27 232 147454321 147454526 4.090000e-55 226.0
39 TraesCS5D01G518900 chr2A 87.255 204 19 5 28 224 32548079 32548282 4.090000e-55 226.0
40 TraesCS5D01G518900 chr3B 81.818 264 45 1 1322 1582 2991944 2991681 6.850000e-53 219.0
41 TraesCS5D01G518900 chr3B 85.185 54 5 3 3641 3691 340781472 340781525 7.000000e-03 52.8
42 TraesCS5D01G518900 chr5A 84.264 197 29 2 2781 2976 552280396 552280591 1.490000e-44 191.0
43 TraesCS5D01G518900 chr4D 84.946 93 11 3 3582 3672 101665625 101665716 1.560000e-14 91.6
44 TraesCS5D01G518900 chr6D 84.615 65 10 0 3597 3661 7460348 7460284 9.440000e-07 65.8
45 TraesCS5D01G518900 chr6D 82.609 69 10 2 3597 3664 7456956 7456889 4.390000e-05 60.2
46 TraesCS5D01G518900 chr3D 92.500 40 2 1 3627 3666 368955136 368955098 5.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G518900 chr5D 539981685 539985754 4069 True 7516.000000 7516 100.000000 1 4070 1 chr5D.!!$R1 4069
1 TraesCS5D01G518900 chr5D 539973999 539977387 3388 True 670.333333 876 88.310333 966 4070 3 chr5D.!!$R2 3104
2 TraesCS5D01G518900 chr5B 682194309 682197676 3367 True 1201.700000 2763 90.343667 2 3579 3 chr5B.!!$R2 3577
3 TraesCS5D01G518900 chr5B 682952331 682954949 2618 True 1089.000000 1245 82.908000 842 3456 2 chr5B.!!$R3 2614
4 TraesCS5D01G518900 chr5B 682183917 682186928 3011 True 667.250000 1306 86.737000 966 4070 4 chr5B.!!$R1 3104
5 TraesCS5D01G518900 chr4A 627820484 627823515 3031 True 485.200000 979 87.992800 966 4070 5 chr4A.!!$R3 3104
6 TraesCS5D01G518900 chr4A 627917258 627918845 1587 True 446.500000 619 85.623000 295 1594 2 chr4A.!!$R5 1299
7 TraesCS5D01G518900 chr4A 627904164 627905361 1197 True 313.333333 592 88.800333 2840 3904 3 chr4A.!!$R4 1064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.035739 TTTTCGGGTGTGTCTAGGGC 59.964 55.0 0.0 0.0 0.00 5.19 F
293 294 0.106918 TTTCGTGGGGCAAACTGAGT 60.107 50.0 0.0 0.0 0.00 3.41 F
722 816 0.178941 AGGACTCCAGGTACAACGGT 60.179 55.0 0.0 0.0 0.00 4.83 F
1805 2400 0.179100 CGTAGGCTGGACCACATCTG 60.179 60.0 0.0 0.0 43.14 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1071 1622 0.107361 CTGAGAGACCCATGCATGCA 60.107 55.0 25.04 25.04 0.0 3.96 R
2113 2708 0.180171 AAAAAGGGTGCAAACCAGGC 59.820 50.0 10.96 0.00 0.0 4.85 R
2690 3309 0.108138 GTCCTGGTCCGTGAGAATGG 60.108 60.0 0.00 0.00 0.0 3.16 R
3645 4711 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.00 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.044308 TCCTGGCCTCATAAGGTGATTTA 58.956 43.478 3.32 0.00 45.34 1.40
32 33 4.665009 TCCTGGCCTCATAAGGTGATTTAT 59.335 41.667 3.32 0.00 45.34 1.40
33 34 5.134339 TCCTGGCCTCATAAGGTGATTTATT 59.866 40.000 3.32 0.00 45.34 1.40
34 35 5.835280 CCTGGCCTCATAAGGTGATTTATTT 59.165 40.000 3.32 0.00 45.34 1.40
35 36 6.324770 CCTGGCCTCATAAGGTGATTTATTTT 59.675 38.462 3.32 0.00 45.34 1.82
36 37 7.346751 TGGCCTCATAAGGTGATTTATTTTC 57.653 36.000 3.32 0.00 45.34 2.29
37 38 6.039270 TGGCCTCATAAGGTGATTTATTTTCG 59.961 38.462 3.32 0.00 45.34 3.46
38 39 6.438763 GCCTCATAAGGTGATTTATTTTCGG 58.561 40.000 0.00 0.00 45.34 4.30
39 40 6.515035 GCCTCATAAGGTGATTTATTTTCGGG 60.515 42.308 0.00 0.00 45.34 5.14
40 41 6.546034 CCTCATAAGGTGATTTATTTTCGGGT 59.454 38.462 0.00 0.00 37.94 5.28
41 42 7.328277 TCATAAGGTGATTTATTTTCGGGTG 57.672 36.000 0.00 0.00 0.00 4.61
42 43 6.887545 TCATAAGGTGATTTATTTTCGGGTGT 59.112 34.615 0.00 0.00 0.00 4.16
43 44 5.385509 AAGGTGATTTATTTTCGGGTGTG 57.614 39.130 0.00 0.00 0.00 3.82
44 45 4.403734 AGGTGATTTATTTTCGGGTGTGT 58.596 39.130 0.00 0.00 0.00 3.72
45 46 4.457949 AGGTGATTTATTTTCGGGTGTGTC 59.542 41.667 0.00 0.00 0.00 3.67
46 47 4.457949 GGTGATTTATTTTCGGGTGTGTCT 59.542 41.667 0.00 0.00 0.00 3.41
47 48 5.644636 GGTGATTTATTTTCGGGTGTGTCTA 59.355 40.000 0.00 0.00 0.00 2.59
48 49 6.183360 GGTGATTTATTTTCGGGTGTGTCTAG 60.183 42.308 0.00 0.00 0.00 2.43
49 50 5.878116 TGATTTATTTTCGGGTGTGTCTAGG 59.122 40.000 0.00 0.00 0.00 3.02
50 51 2.781681 ATTTTCGGGTGTGTCTAGGG 57.218 50.000 0.00 0.00 0.00 3.53
51 52 0.035739 TTTTCGGGTGTGTCTAGGGC 59.964 55.000 0.00 0.00 0.00 5.19
52 53 1.122632 TTTCGGGTGTGTCTAGGGCA 61.123 55.000 0.00 0.00 0.00 5.36
53 54 1.823169 TTCGGGTGTGTCTAGGGCAC 61.823 60.000 10.20 10.20 37.37 5.01
54 55 2.579657 CGGGTGTGTCTAGGGCACA 61.580 63.158 14.22 14.22 43.60 4.57
55 56 1.899437 CGGGTGTGTCTAGGGCACAT 61.899 60.000 18.92 0.00 46.66 3.21
56 57 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
57 58 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
58 59 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
59 60 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
60 61 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
61 62 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
62 63 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
77 78 5.772825 TCTAGATGTGCCCAAATTATTGC 57.227 39.130 0.00 0.00 35.10 3.56
78 79 5.199723 TCTAGATGTGCCCAAATTATTGCA 58.800 37.500 0.00 0.00 35.10 4.08
85 86 5.929058 TGCCCAAATTATTGCACATCTAA 57.071 34.783 0.00 0.00 35.10 2.10
86 87 5.904941 TGCCCAAATTATTGCACATCTAAG 58.095 37.500 0.00 0.00 35.10 2.18
87 88 5.421693 TGCCCAAATTATTGCACATCTAAGT 59.578 36.000 0.00 0.00 35.10 2.24
88 89 5.750067 GCCCAAATTATTGCACATCTAAGTG 59.250 40.000 0.00 0.00 42.37 3.16
89 90 6.405731 GCCCAAATTATTGCACATCTAAGTGA 60.406 38.462 0.00 0.00 41.19 3.41
90 91 6.974622 CCCAAATTATTGCACATCTAAGTGAC 59.025 38.462 0.00 0.00 41.19 3.67
91 92 7.148018 CCCAAATTATTGCACATCTAAGTGACT 60.148 37.037 0.00 0.00 41.19 3.41
92 93 8.246180 CCAAATTATTGCACATCTAAGTGACTT 58.754 33.333 2.37 2.37 41.19 3.01
97 98 9.665719 TTATTGCACATCTAAGTGACTTAATCA 57.334 29.630 6.51 0.00 42.05 2.57
98 99 7.977789 TTGCACATCTAAGTGACTTAATCAA 57.022 32.000 6.51 2.57 42.05 2.57
99 100 7.601073 TGCACATCTAAGTGACTTAATCAAG 57.399 36.000 6.51 0.00 42.05 3.02
100 101 6.092670 TGCACATCTAAGTGACTTAATCAAGC 59.907 38.462 6.51 8.67 42.05 4.01
101 102 6.092670 GCACATCTAAGTGACTTAATCAAGCA 59.907 38.462 6.51 0.00 42.05 3.91
102 103 7.201679 GCACATCTAAGTGACTTAATCAAGCAT 60.202 37.037 6.51 0.00 42.05 3.79
103 104 9.317936 CACATCTAAGTGACTTAATCAAGCATA 57.682 33.333 6.51 0.00 42.05 3.14
104 105 9.890629 ACATCTAAGTGACTTAATCAAGCATAA 57.109 29.630 6.51 0.00 39.72 1.90
131 132 7.669089 AAAAGGAGAAAAGAAAATACCCACA 57.331 32.000 0.00 0.00 0.00 4.17
132 133 6.650427 AAGGAGAAAAGAAAATACCCACAC 57.350 37.500 0.00 0.00 0.00 3.82
133 134 4.760204 AGGAGAAAAGAAAATACCCACACG 59.240 41.667 0.00 0.00 0.00 4.49
134 135 4.758165 GGAGAAAAGAAAATACCCACACGA 59.242 41.667 0.00 0.00 0.00 4.35
135 136 5.239963 GGAGAAAAGAAAATACCCACACGAA 59.760 40.000 0.00 0.00 0.00 3.85
136 137 6.072119 GGAGAAAAGAAAATACCCACACGAAT 60.072 38.462 0.00 0.00 0.00 3.34
137 138 6.909909 AGAAAAGAAAATACCCACACGAATC 58.090 36.000 0.00 0.00 0.00 2.52
138 139 6.715264 AGAAAAGAAAATACCCACACGAATCT 59.285 34.615 0.00 0.00 0.00 2.40
139 140 6.496338 AAAGAAAATACCCACACGAATCTC 57.504 37.500 0.00 0.00 0.00 2.75
140 141 5.422214 AGAAAATACCCACACGAATCTCT 57.578 39.130 0.00 0.00 0.00 3.10
141 142 5.178797 AGAAAATACCCACACGAATCTCTG 58.821 41.667 0.00 0.00 0.00 3.35
142 143 2.604046 ATACCCACACGAATCTCTGC 57.396 50.000 0.00 0.00 0.00 4.26
143 144 0.172578 TACCCACACGAATCTCTGCG 59.827 55.000 0.00 0.00 0.00 5.18
144 145 1.079819 CCCACACGAATCTCTGCGT 60.080 57.895 0.00 0.00 42.11 5.24
145 146 0.172578 CCCACACGAATCTCTGCGTA 59.827 55.000 0.00 0.00 38.92 4.42
146 147 1.403647 CCCACACGAATCTCTGCGTAA 60.404 52.381 0.00 0.00 38.92 3.18
147 148 1.920574 CCACACGAATCTCTGCGTAAG 59.079 52.381 0.00 0.00 38.92 2.34
148 149 2.415491 CCACACGAATCTCTGCGTAAGA 60.415 50.000 0.00 0.00 38.92 2.10
149 150 3.439293 CACACGAATCTCTGCGTAAGAT 58.561 45.455 0.00 0.00 38.92 2.40
150 151 3.483922 CACACGAATCTCTGCGTAAGATC 59.516 47.826 0.00 0.00 38.92 2.75
151 152 3.128764 ACACGAATCTCTGCGTAAGATCA 59.871 43.478 0.00 0.00 38.92 2.92
152 153 4.105486 CACGAATCTCTGCGTAAGATCAA 58.895 43.478 0.00 0.00 38.92 2.57
153 154 4.742167 CACGAATCTCTGCGTAAGATCAAT 59.258 41.667 0.00 0.00 38.92 2.57
154 155 4.742167 ACGAATCTCTGCGTAAGATCAATG 59.258 41.667 0.00 0.00 39.21 2.82
155 156 4.978580 CGAATCTCTGCGTAAGATCAATGA 59.021 41.667 0.00 0.00 43.02 2.57
156 157 5.108065 CGAATCTCTGCGTAAGATCAATGAC 60.108 44.000 0.00 0.00 43.02 3.06
157 158 4.718940 TCTCTGCGTAAGATCAATGACA 57.281 40.909 0.00 0.00 43.02 3.58
158 159 4.424626 TCTCTGCGTAAGATCAATGACAC 58.575 43.478 0.00 0.00 43.02 3.67
159 160 4.082245 TCTCTGCGTAAGATCAATGACACA 60.082 41.667 0.00 0.00 43.02 3.72
160 161 4.565022 TCTGCGTAAGATCAATGACACAA 58.435 39.130 0.00 0.00 43.02 3.33
161 162 4.627035 TCTGCGTAAGATCAATGACACAAG 59.373 41.667 0.00 0.00 43.02 3.16
162 163 4.565022 TGCGTAAGATCAATGACACAAGA 58.435 39.130 0.00 0.00 43.02 3.02
163 164 4.388773 TGCGTAAGATCAATGACACAAGAC 59.611 41.667 0.00 0.00 43.02 3.01
164 165 4.627467 GCGTAAGATCAATGACACAAGACT 59.373 41.667 0.00 0.00 43.02 3.24
165 166 5.120830 GCGTAAGATCAATGACACAAGACTT 59.879 40.000 0.00 0.00 43.02 3.01
166 167 6.310467 GCGTAAGATCAATGACACAAGACTTA 59.690 38.462 0.00 0.00 43.02 2.24
167 168 7.463383 GCGTAAGATCAATGACACAAGACTTAG 60.463 40.741 0.00 0.00 43.02 2.18
168 169 7.755373 CGTAAGATCAATGACACAAGACTTAGA 59.245 37.037 0.00 0.00 43.02 2.10
169 170 9.593134 GTAAGATCAATGACACAAGACTTAGAT 57.407 33.333 0.00 0.00 0.00 1.98
170 171 8.489990 AAGATCAATGACACAAGACTTAGATG 57.510 34.615 0.00 0.00 0.00 2.90
171 172 7.619050 AGATCAATGACACAAGACTTAGATGT 58.381 34.615 0.00 0.00 0.00 3.06
173 174 5.409520 TCAATGACACAAGACTTAGATGTGC 59.590 40.000 13.90 9.45 46.42 4.57
174 175 4.335400 TGACACAAGACTTAGATGTGCA 57.665 40.909 13.90 11.11 46.42 4.57
175 176 4.702831 TGACACAAGACTTAGATGTGCAA 58.297 39.130 13.90 4.25 46.42 4.08
176 177 5.308014 TGACACAAGACTTAGATGTGCAAT 58.692 37.500 13.90 0.00 46.42 3.56
177 178 6.463360 TGACACAAGACTTAGATGTGCAATA 58.537 36.000 13.90 0.00 46.42 1.90
178 179 6.368791 TGACACAAGACTTAGATGTGCAATAC 59.631 38.462 13.90 0.00 46.42 1.89
179 180 6.467677 ACACAAGACTTAGATGTGCAATACT 58.532 36.000 13.90 0.00 46.42 2.12
180 181 6.936900 ACACAAGACTTAGATGTGCAATACTT 59.063 34.615 13.90 0.00 46.42 2.24
181 182 8.094548 ACACAAGACTTAGATGTGCAATACTTA 58.905 33.333 13.90 0.00 46.42 2.24
182 183 9.102757 CACAAGACTTAGATGTGCAATACTTAT 57.897 33.333 0.00 0.00 38.14 1.73
183 184 9.102757 ACAAGACTTAGATGTGCAATACTTATG 57.897 33.333 0.00 0.00 0.00 1.90
184 185 8.554528 CAAGACTTAGATGTGCAATACTTATGG 58.445 37.037 0.00 0.00 0.00 2.74
185 186 6.708054 AGACTTAGATGTGCAATACTTATGGC 59.292 38.462 0.00 0.00 33.16 4.40
186 187 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
244 245 3.750371 TCTTTACAACCCATCACACCTG 58.250 45.455 0.00 0.00 0.00 4.00
275 276 7.469181 GCAATTTGCATGTAGGCTACTAAGATT 60.469 37.037 24.07 13.56 44.26 2.40
277 278 7.553881 TTTGCATGTAGGCTACTAAGATTTC 57.446 36.000 24.07 5.74 34.04 2.17
293 294 0.106918 TTTCGTGGGGCAAACTGAGT 60.107 50.000 0.00 0.00 0.00 3.41
383 388 2.008329 GAATCTGGTTCTGAGCTGCAG 58.992 52.381 10.11 10.11 46.31 4.41
397 402 1.803625 GCTGCAGCTCAAACAAGCAAA 60.804 47.619 31.33 0.00 45.00 3.68
399 404 1.202440 TGCAGCTCAAACAAGCAAAGG 60.202 47.619 0.00 0.00 45.00 3.11
449 479 6.432403 AGCAAGGGATAGGAATAAGAAGAG 57.568 41.667 0.00 0.00 0.00 2.85
526 560 5.578336 GGAAAAGCCAAGAATATTGTGCTTC 59.422 40.000 13.63 5.87 36.02 3.86
534 568 3.760151 AGAATATTGTGCTTCAAGCTGCA 59.240 39.130 11.57 7.03 42.97 4.41
559 651 2.434336 TCATATGAGCGCACCTTTACCT 59.566 45.455 11.47 0.00 0.00 3.08
572 664 0.804544 TTTACCTTGAGATCGCCGCG 60.805 55.000 6.39 6.39 0.00 6.46
579 671 3.144120 GAGATCGCCGCGAACAAGC 62.144 63.158 21.02 7.15 39.99 4.01
618 712 8.474831 TCCTCAAATAAAAGCTAATTAAAGGGC 58.525 33.333 0.00 0.00 0.00 5.19
661 755 3.758755 AAGAAGCAGGATATCGATGCA 57.241 42.857 24.96 0.00 42.45 3.96
674 768 3.403613 TCGATGCATTGTTTCGATTGG 57.596 42.857 13.73 0.00 37.01 3.16
717 811 0.611062 CCACGAGGACTCCAGGTACA 60.611 60.000 0.00 0.00 36.89 2.90
722 816 0.178941 AGGACTCCAGGTACAACGGT 60.179 55.000 0.00 0.00 0.00 4.83
744 838 6.092122 CGGTATCAAATGAAAGCTCTGTTGTA 59.908 38.462 0.00 0.00 0.00 2.41
745 839 7.244192 GGTATCAAATGAAAGCTCTGTTGTAC 58.756 38.462 0.00 0.00 0.00 2.90
746 840 5.342806 TCAAATGAAAGCTCTGTTGTACG 57.657 39.130 0.00 0.00 0.00 3.67
747 841 4.814234 TCAAATGAAAGCTCTGTTGTACGT 59.186 37.500 0.00 0.00 0.00 3.57
748 842 5.986741 TCAAATGAAAGCTCTGTTGTACGTA 59.013 36.000 0.00 0.00 0.00 3.57
766 860 2.975851 CGTACACAAGTTGTCGTACTCC 59.024 50.000 27.31 14.49 39.91 3.85
768 862 1.758280 ACACAAGTTGTCGTACTCCCA 59.242 47.619 5.27 0.00 29.79 4.37
771 865 0.316204 AAGTTGTCGTACTCCCACCG 59.684 55.000 0.00 0.00 0.00 4.94
773 867 0.665369 GTTGTCGTACTCCCACCGTG 60.665 60.000 0.00 0.00 0.00 4.94
784 878 1.071071 TCCCACCGTGTCCTTTTACTG 59.929 52.381 0.00 0.00 0.00 2.74
798 892 7.145323 GTCCTTTTACTGCACATATTTGTTGT 58.855 34.615 0.00 0.00 32.34 3.32
808 902 5.668866 GCACATATTTGTTGTGTCTCGAGTC 60.669 44.000 13.13 7.62 44.96 3.36
820 914 4.331717 GTGTCTCGAGTCAAACTTTCCAAA 59.668 41.667 13.96 0.00 0.00 3.28
892 987 8.555896 TTAACCAAAAGATTAAAGGGGAACTT 57.444 30.769 0.00 0.00 42.52 2.66
896 991 6.041523 CCAAAAGATTAAAGGGGAACTTGACA 59.958 38.462 0.00 0.00 39.96 3.58
901 996 1.222567 AAGGGGAACTTGACAGGTGT 58.777 50.000 0.00 0.00 38.21 4.16
902 997 2.112279 AGGGGAACTTGACAGGTGTA 57.888 50.000 0.00 0.00 0.00 2.90
903 998 1.978580 AGGGGAACTTGACAGGTGTAG 59.021 52.381 0.00 0.00 0.00 2.74
904 999 1.610886 GGGGAACTTGACAGGTGTAGC 60.611 57.143 0.00 0.00 0.00 3.58
906 1001 1.071699 GGAACTTGACAGGTGTAGCCA 59.928 52.381 0.00 0.00 40.61 4.75
907 1002 2.143925 GAACTTGACAGGTGTAGCCAC 58.856 52.381 0.00 0.00 40.61 5.01
948 1419 1.218047 CAGCCGCTAGTAGCACCAA 59.782 57.895 21.70 0.00 42.58 3.67
1138 1693 4.717629 TGCGCGTCCTCGTCTTGG 62.718 66.667 8.43 0.00 39.49 3.61
1178 1733 7.310361 CCAGTTCTTCCTCTACTTCTCTGATTT 60.310 40.741 0.00 0.00 0.00 2.17
1192 1747 2.236146 TCTGATTTGGTGCGTCTATGGT 59.764 45.455 0.00 0.00 0.00 3.55
1204 1759 4.681835 CGTCTATGGTATAAGCTACGCT 57.318 45.455 0.00 0.00 42.56 5.07
1213 1768 1.552578 TAAGCTACGCTGGTTGAGGA 58.447 50.000 0.00 0.00 39.62 3.71
1248 1803 2.666190 CACATAGGCGGGGATGCG 60.666 66.667 0.00 0.00 35.06 4.73
1317 1872 2.366480 CTGCTGATGGAGGGAGCGAG 62.366 65.000 0.00 0.00 35.36 5.03
1370 1925 0.622665 ATTCACCTTGGAGGCCAGAG 59.377 55.000 5.01 0.00 39.63 3.35
1442 1997 0.759436 ACTCTGGTGTCCCAAGTCGT 60.759 55.000 0.00 0.00 41.27 4.34
1596 2151 0.463474 GCATGGCCTCCAGAAGTCTC 60.463 60.000 3.32 0.00 36.75 3.36
1611 2166 3.289797 TCTCTCCGTGCCAAGAGAT 57.710 52.632 0.00 0.00 42.31 2.75
1621 2176 3.181461 CGTGCCAAGAGATAAAGGATCCT 60.181 47.826 9.02 9.02 34.80 3.24
1624 2179 4.474651 TGCCAAGAGATAAAGGATCCTTCA 59.525 41.667 27.20 14.42 34.80 3.02
1683 2238 8.991243 TGGATTTTATTTCAGCAAGAATGAAG 57.009 30.769 0.00 0.00 37.91 3.02
1685 2240 9.080915 GGATTTTATTTCAGCAAGAATGAAGAC 57.919 33.333 0.00 0.00 37.91 3.01
1693 2248 2.677337 GCAAGAATGAAGACAGGAGAGC 59.323 50.000 0.00 0.00 0.00 4.09
1719 2274 4.045636 ACACAAATGCAACCTTTCACTC 57.954 40.909 0.00 0.00 0.00 3.51
1742 2297 6.173339 TCCAAGACTATGTAAAAGAGGCAAG 58.827 40.000 0.00 0.00 0.00 4.01
1746 2301 5.485708 AGACTATGTAAAAGAGGCAAGGAGT 59.514 40.000 0.00 0.00 0.00 3.85
1748 2303 7.345914 AGACTATGTAAAAGAGGCAAGGAGTAT 59.654 37.037 0.00 0.00 0.00 2.12
1749 2304 7.862675 ACTATGTAAAAGAGGCAAGGAGTATT 58.137 34.615 0.00 0.00 0.00 1.89
1750 2305 7.770897 ACTATGTAAAAGAGGCAAGGAGTATTG 59.229 37.037 0.00 0.00 0.00 1.90
1752 2307 7.011499 TGTAAAAGAGGCAAGGAGTATTGTA 57.989 36.000 0.00 0.00 32.56 2.41
1784 2345 2.152016 GGAGGTACCAAGTGAAAGTGC 58.848 52.381 15.94 0.00 38.79 4.40
1787 2348 0.872388 GTACCAAGTGAAAGTGCCCG 59.128 55.000 0.00 0.00 0.00 6.13
1788 2349 0.470766 TACCAAGTGAAAGTGCCCGT 59.529 50.000 0.00 0.00 0.00 5.28
1805 2400 0.179100 CGTAGGCTGGACCACATCTG 60.179 60.000 0.00 0.00 43.14 2.90
1828 2423 4.785346 ATGATGCTTGTGGACCTATCTT 57.215 40.909 0.00 0.00 0.00 2.40
1829 2424 3.877559 TGATGCTTGTGGACCTATCTTG 58.122 45.455 0.00 0.00 0.00 3.02
1834 2429 1.191535 TGTGGACCTATCTTGTCGGG 58.808 55.000 0.00 0.00 33.46 5.14
1837 2432 0.751452 GGACCTATCTTGTCGGGACC 59.249 60.000 0.00 0.00 33.46 4.46
1839 2434 0.690077 ACCTATCTTGTCGGGACCCC 60.690 60.000 4.46 0.00 0.00 4.95
1840 2435 0.689745 CCTATCTTGTCGGGACCCCA 60.690 60.000 4.46 0.00 35.37 4.96
1886 2481 1.406069 CCTCAAGTTGGATGACGAGGG 60.406 57.143 2.34 0.00 37.07 4.30
1889 2484 1.056660 AAGTTGGATGACGAGGGTGT 58.943 50.000 0.00 0.00 0.00 4.16
1898 2493 1.069513 TGACGAGGGTGTACACAAAGG 59.930 52.381 26.51 14.93 0.00 3.11
1900 2495 1.069668 ACGAGGGTGTACACAAAGGTC 59.930 52.381 26.51 13.55 0.00 3.85
1929 2524 4.041198 ACGTGGGTTTGGGATACATATAGG 59.959 45.833 0.00 0.00 39.74 2.57
1935 2530 6.217693 GGGTTTGGGATACATATAGGATCCTT 59.782 42.308 22.03 10.49 39.36 3.36
1943 2538 8.478877 GGATACATATAGGATCCTTTACACCAG 58.521 40.741 22.03 7.57 36.89 4.00
1946 2541 8.511748 ACATATAGGATCCTTTACACCAGAAT 57.488 34.615 22.03 5.55 0.00 2.40
1954 2549 6.566079 TCCTTTACACCAGAATGAGATCAT 57.434 37.500 0.00 0.00 39.69 2.45
1963 2558 6.259608 CACCAGAATGAGATCATACCAAACTC 59.740 42.308 0.00 0.00 39.69 3.01
1964 2559 5.762218 CCAGAATGAGATCATACCAAACTCC 59.238 44.000 0.00 0.00 39.69 3.85
1974 2569 4.534500 TCATACCAAACTCCTCTTGGCTTA 59.466 41.667 1.51 0.00 46.20 3.09
1982 2577 2.170187 CTCCTCTTGGCTTATGCTCAGT 59.830 50.000 0.13 0.00 39.59 3.41
1985 2580 2.676839 CTCTTGGCTTATGCTCAGTGTG 59.323 50.000 0.13 0.00 39.59 3.82
1986 2581 1.741706 CTTGGCTTATGCTCAGTGTGG 59.258 52.381 0.13 0.00 39.59 4.17
1989 2584 2.162681 GGCTTATGCTCAGTGTGGTTT 58.837 47.619 0.13 0.00 39.59 3.27
2007 2602 2.292828 TTCTTCCTTTCCTGGCCTTG 57.707 50.000 3.32 0.00 0.00 3.61
2106 2701 1.135199 GGTTGCACAGCCATGATTCAG 60.135 52.381 0.00 0.00 0.00 3.02
2109 2704 1.814394 TGCACAGCCATGATTCAGTTC 59.186 47.619 0.00 0.00 0.00 3.01
2110 2705 1.202110 GCACAGCCATGATTCAGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
2111 2706 1.089920 ACAGCCATGATTCAGTTCGC 58.910 50.000 0.00 0.00 0.00 4.70
2112 2707 0.379669 CAGCCATGATTCAGTTCGCC 59.620 55.000 0.00 0.00 0.00 5.54
2113 2708 1.091771 AGCCATGATTCAGTTCGCCG 61.092 55.000 0.00 0.00 0.00 6.46
2114 2709 1.353103 CCATGATTCAGTTCGCCGC 59.647 57.895 0.00 0.00 0.00 6.53
2115 2710 1.353103 CATGATTCAGTTCGCCGCC 59.647 57.895 0.00 0.00 0.00 6.13
2116 2711 1.091771 CATGATTCAGTTCGCCGCCT 61.092 55.000 0.00 0.00 0.00 5.52
2117 2712 1.091771 ATGATTCAGTTCGCCGCCTG 61.092 55.000 0.00 0.00 0.00 4.85
2121 2716 2.951475 TTCAGTTCGCCGCCTGGTTT 62.951 55.000 0.00 0.00 37.67 3.27
2153 2748 1.354506 GCATGCCTTGCGACATCTC 59.645 57.895 6.36 0.00 42.54 2.75
2158 2753 2.125552 CTTGCGACATCTCGGGCA 60.126 61.111 0.00 0.00 40.53 5.36
2159 2754 2.125552 TTGCGACATCTCGGGCAG 60.126 61.111 0.00 0.00 40.53 4.85
2199 2794 2.223782 GCAAGACATGGTTTCACAGCAA 60.224 45.455 0.00 0.00 36.17 3.91
2267 2862 6.037391 ACCACTTTCATGAAAATTGTTGCTTG 59.963 34.615 20.82 8.44 0.00 4.01
2347 2942 4.914983 TCTCCAGATTGAAGTGCTGATTT 58.085 39.130 0.00 0.00 0.00 2.17
2468 3084 1.623311 TCAACATCTTTGGAGCCTCGA 59.377 47.619 0.00 0.00 0.00 4.04
2469 3085 2.038426 TCAACATCTTTGGAGCCTCGAA 59.962 45.455 0.00 0.00 0.00 3.71
2470 3086 2.393271 ACATCTTTGGAGCCTCGAAG 57.607 50.000 1.28 1.28 0.00 3.79
2487 3103 5.171147 TCGAAGAACTAGGATTCGATGAC 57.829 43.478 18.91 0.00 46.96 3.06
2489 3105 4.735822 CGAAGAACTAGGATTCGATGACAC 59.264 45.833 16.60 0.00 46.57 3.67
2548 3167 1.604378 CACCCTGACACATCCTCCC 59.396 63.158 0.00 0.00 0.00 4.30
2549 3168 1.160870 ACCCTGACACATCCTCCCA 59.839 57.895 0.00 0.00 0.00 4.37
2550 3169 0.911525 ACCCTGACACATCCTCCCAG 60.912 60.000 0.00 0.00 0.00 4.45
2614 3233 8.173412 AGATATCCAACTACATGATCTACCTGA 58.827 37.037 0.00 0.00 0.00 3.86
2682 3301 2.780065 TCACAGTTGCTTGCAATGAC 57.220 45.000 11.32 0.00 0.00 3.06
2690 3309 1.067425 TGCTTGCAATGACATCAAGGC 60.067 47.619 15.13 9.84 38.05 4.35
2707 3326 1.450312 GCCATTCTCACGGACCAGG 60.450 63.158 0.00 0.00 0.00 4.45
2709 3328 0.108138 CCATTCTCACGGACCAGGAC 60.108 60.000 0.00 0.00 0.00 3.85
2717 3336 2.348104 CGGACCAGGACGATCCACA 61.348 63.158 0.00 0.00 39.61 4.17
2718 3337 1.517832 GGACCAGGACGATCCACAG 59.482 63.158 0.00 0.00 39.61 3.66
2719 3338 1.517832 GACCAGGACGATCCACAGG 59.482 63.158 0.00 7.41 39.61 4.00
2731 3350 4.424566 CACAGGGCATTGCACGGC 62.425 66.667 11.11 0.14 36.86 5.68
2732 3351 4.972733 ACAGGGCATTGCACGGCA 62.973 61.111 11.11 0.00 36.86 5.69
2750 3369 2.611292 GGCAGATTCTTCTCATGGAACG 59.389 50.000 0.00 0.00 0.00 3.95
2756 3375 3.170791 TCTTCTCATGGAACGAGATGC 57.829 47.619 0.00 0.00 39.22 3.91
2767 3392 4.000988 GGAACGAGATGCACTTAAAGGAA 58.999 43.478 0.00 0.00 0.00 3.36
2779 3404 5.221244 GCACTTAAAGGAATTGTGGTTCAGT 60.221 40.000 0.00 0.00 0.00 3.41
2995 3620 0.911769 AATCCTGGGCGACAAGATCA 59.088 50.000 0.00 0.00 28.92 2.92
3108 3801 6.805760 GTGCTGATTTTCTCTTCATTCCTTTC 59.194 38.462 0.00 0.00 0.00 2.62
3119 3813 7.611855 TCTCTTCATTCCTTTCCCTATTTTGAC 59.388 37.037 0.00 0.00 0.00 3.18
3134 3828 4.782019 TTTTGACTTGAGTGTGCTGTTT 57.218 36.364 0.00 0.00 0.00 2.83
3135 3829 4.355543 TTTGACTTGAGTGTGCTGTTTC 57.644 40.909 0.00 0.00 0.00 2.78
3141 3835 5.163513 ACTTGAGTGTGCTGTTTCTTTTTG 58.836 37.500 0.00 0.00 0.00 2.44
3162 3858 2.584492 ACTTGTGTGCTTTGCTTTCC 57.416 45.000 0.00 0.00 0.00 3.13
3217 3915 3.312504 CCATGTCGAGTACGCGCG 61.313 66.667 30.96 30.96 39.58 6.86
3324 4024 3.126858 GCTACAAAAGAATCATGGCACGA 59.873 43.478 0.00 0.00 0.00 4.35
3333 4033 4.435436 ATGGCACGAAGCGAGCGA 62.435 61.111 0.00 0.13 43.67 4.93
3356 4064 1.024579 GTTGTAGCACCCATGACCCG 61.025 60.000 0.00 0.00 0.00 5.28
3384 4116 8.749354 GGGGTCTGTTTGATCTTGTTTATTTAT 58.251 33.333 0.00 0.00 0.00 1.40
3419 4191 0.108377 TATGTGATGTGCCGCGAGTT 60.108 50.000 8.23 0.00 0.00 3.01
3437 4209 6.578691 GCGAGTTGTTATGGTTATACGATTC 58.421 40.000 0.00 0.00 0.00 2.52
3497 4270 5.047847 TGCTACAGTTGTACAAGTTGTCTC 58.952 41.667 22.25 16.84 0.00 3.36
3503 4276 6.979238 ACAGTTGTACAAGTTGTCTCTAGTTC 59.021 38.462 12.82 0.00 0.00 3.01
3509 4282 9.511272 TGTACAAGTTGTCTCTAGTTCATACTA 57.489 33.333 12.82 0.00 35.78 1.82
3587 4653 9.886132 AAAAATATTAACATCTACTCACTCCGT 57.114 29.630 0.00 0.00 0.00 4.69
3588 4654 9.530633 AAAATATTAACATCTACTCACTCCGTC 57.469 33.333 0.00 0.00 0.00 4.79
3589 4655 4.978083 TTAACATCTACTCACTCCGTCC 57.022 45.455 0.00 0.00 0.00 4.79
3590 4656 1.765230 ACATCTACTCACTCCGTCCC 58.235 55.000 0.00 0.00 0.00 4.46
3591 4657 1.005569 ACATCTACTCACTCCGTCCCA 59.994 52.381 0.00 0.00 0.00 4.37
3592 4658 2.100197 CATCTACTCACTCCGTCCCAA 58.900 52.381 0.00 0.00 0.00 4.12
3593 4659 2.297698 TCTACTCACTCCGTCCCAAA 57.702 50.000 0.00 0.00 0.00 3.28
3594 4660 2.600790 TCTACTCACTCCGTCCCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
3595 4661 3.170717 TCTACTCACTCCGTCCCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
3596 4662 4.346730 TCTACTCACTCCGTCCCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
3597 4663 3.611766 ACTCACTCCGTCCCAAAATAG 57.388 47.619 0.00 0.00 0.00 1.73
3598 4664 2.904434 ACTCACTCCGTCCCAAAATAGT 59.096 45.455 0.00 0.00 0.00 2.12
3599 4665 3.262420 CTCACTCCGTCCCAAAATAGTG 58.738 50.000 0.00 0.00 36.52 2.74
3600 4666 2.635915 TCACTCCGTCCCAAAATAGTGT 59.364 45.455 0.00 0.00 36.56 3.55
3601 4667 3.000727 CACTCCGTCCCAAAATAGTGTC 58.999 50.000 0.00 0.00 31.82 3.67
3602 4668 2.635915 ACTCCGTCCCAAAATAGTGTCA 59.364 45.455 0.00 0.00 0.00 3.58
3603 4669 3.000727 CTCCGTCCCAAAATAGTGTCAC 58.999 50.000 0.00 0.00 0.00 3.67
3604 4670 2.635915 TCCGTCCCAAAATAGTGTCACT 59.364 45.455 10.99 10.99 0.00 3.41
3605 4671 2.742053 CCGTCCCAAAATAGTGTCACTG 59.258 50.000 16.03 0.00 0.00 3.66
3606 4672 3.556213 CCGTCCCAAAATAGTGTCACTGA 60.556 47.826 16.03 0.00 0.00 3.41
3607 4673 4.253685 CGTCCCAAAATAGTGTCACTGAT 58.746 43.478 16.03 1.13 0.00 2.90
3608 4674 4.695455 CGTCCCAAAATAGTGTCACTGATT 59.305 41.667 16.03 7.43 0.00 2.57
3609 4675 5.181245 CGTCCCAAAATAGTGTCACTGATTT 59.819 40.000 16.03 12.70 0.00 2.17
3610 4676 6.370442 CGTCCCAAAATAGTGTCACTGATTTA 59.630 38.462 16.03 0.00 0.00 1.40
3611 4677 7.413000 CGTCCCAAAATAGTGTCACTGATTTAG 60.413 40.741 16.03 9.13 0.00 1.85
3612 4678 7.390718 GTCCCAAAATAGTGTCACTGATTTAGT 59.609 37.037 16.03 2.25 41.36 2.24
3613 4679 8.598916 TCCCAAAATAGTGTCACTGATTTAGTA 58.401 33.333 16.03 0.00 37.60 1.82
3614 4680 9.396022 CCCAAAATAGTGTCACTGATTTAGTAT 57.604 33.333 16.03 0.00 37.60 2.12
3622 4688 9.998106 AGTGTCACTGATTTAGTATAAAGTTGT 57.002 29.630 4.21 0.00 37.60 3.32
3637 4703 9.269415 GTATAAAGTTGTATTAAACCAGCAACG 57.731 33.333 0.00 0.00 42.72 4.10
3638 4704 4.155310 AGTTGTATTAAACCAGCAACGC 57.845 40.909 0.00 0.00 42.72 4.84
3639 4705 3.818773 AGTTGTATTAAACCAGCAACGCT 59.181 39.130 0.00 0.00 42.72 5.07
3640 4706 4.277423 AGTTGTATTAAACCAGCAACGCTT 59.723 37.500 0.00 0.00 42.72 4.68
3641 4707 5.470777 AGTTGTATTAAACCAGCAACGCTTA 59.529 36.000 0.00 0.00 42.72 3.09
3642 4708 6.150474 AGTTGTATTAAACCAGCAACGCTTAT 59.850 34.615 0.00 0.00 42.72 1.73
3643 4709 6.503589 TGTATTAAACCAGCAACGCTTATT 57.496 33.333 0.00 0.00 36.40 1.40
3644 4710 6.915349 TGTATTAAACCAGCAACGCTTATTT 58.085 32.000 0.00 0.00 36.40 1.40
3645 4711 7.371936 TGTATTAAACCAGCAACGCTTATTTT 58.628 30.769 0.00 0.00 36.40 1.82
3646 4712 6.704512 ATTAAACCAGCAACGCTTATTTTG 57.295 33.333 0.00 0.00 36.40 2.44
3647 4713 2.723124 ACCAGCAACGCTTATTTTGG 57.277 45.000 0.00 0.00 36.40 3.28
3648 4714 1.272212 ACCAGCAACGCTTATTTTGGG 59.728 47.619 0.00 0.00 36.40 4.12
3649 4715 1.543802 CCAGCAACGCTTATTTTGGGA 59.456 47.619 0.00 0.00 36.40 4.37
3650 4716 2.595386 CAGCAACGCTTATTTTGGGAC 58.405 47.619 0.00 0.00 36.40 4.46
3651 4717 1.199097 AGCAACGCTTATTTTGGGACG 59.801 47.619 0.00 0.00 33.89 4.79
3652 4718 1.731098 GCAACGCTTATTTTGGGACGG 60.731 52.381 0.00 0.00 0.00 4.79
3653 4719 1.807742 CAACGCTTATTTTGGGACGGA 59.192 47.619 0.00 0.00 0.00 4.69
3654 4720 1.734163 ACGCTTATTTTGGGACGGAG 58.266 50.000 0.00 0.00 0.00 4.63
3655 4721 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
3656 4722 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
3657 4723 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
3658 4724 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
3659 4725 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3660 4726 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3799 5120 1.843851 TCCGCCAAGAGGGATTACATT 59.156 47.619 0.00 0.00 40.01 2.71
3823 5144 5.985530 TCATCTATACAAATCTGCTCGGTTG 59.014 40.000 0.00 0.00 0.00 3.77
3846 5184 5.010112 TGGAATAACCGATGCAAAAACAGAA 59.990 36.000 0.00 0.00 42.61 3.02
3852 5190 4.634004 ACCGATGCAAAAACAGAATATCGA 59.366 37.500 0.00 0.00 38.45 3.59
3853 5191 5.296780 ACCGATGCAAAAACAGAATATCGAT 59.703 36.000 2.16 2.16 38.45 3.59
3887 5225 5.796350 AGGTGTTCGCAGTAATAATTCAC 57.204 39.130 0.00 0.00 0.00 3.18
3888 5226 5.242434 AGGTGTTCGCAGTAATAATTCACA 58.758 37.500 0.00 0.00 0.00 3.58
3889 5227 5.703592 AGGTGTTCGCAGTAATAATTCACAA 59.296 36.000 0.00 0.00 0.00 3.33
3890 5228 5.793457 GGTGTTCGCAGTAATAATTCACAAC 59.207 40.000 0.00 0.00 0.00 3.32
3891 5229 6.367421 GTGTTCGCAGTAATAATTCACAACA 58.633 36.000 0.00 0.00 0.00 3.33
3892 5230 6.519761 GTGTTCGCAGTAATAATTCACAACAG 59.480 38.462 0.00 0.00 0.00 3.16
3893 5231 5.216566 TCGCAGTAATAATTCACAACAGC 57.783 39.130 0.00 0.00 0.00 4.40
3894 5232 4.693095 TCGCAGTAATAATTCACAACAGCA 59.307 37.500 0.00 0.00 0.00 4.41
3895 5233 4.788100 CGCAGTAATAATTCACAACAGCAC 59.212 41.667 0.00 0.00 0.00 4.40
3896 5234 5.616645 CGCAGTAATAATTCACAACAGCACA 60.617 40.000 0.00 0.00 0.00 4.57
3897 5235 5.569059 GCAGTAATAATTCACAACAGCACAC 59.431 40.000 0.00 0.00 0.00 3.82
3898 5236 6.568462 GCAGTAATAATTCACAACAGCACACT 60.568 38.462 0.00 0.00 0.00 3.55
3899 5237 7.360861 GCAGTAATAATTCACAACAGCACACTA 60.361 37.037 0.00 0.00 0.00 2.74
3900 5238 8.503196 CAGTAATAATTCACAACAGCACACTAA 58.497 33.333 0.00 0.00 0.00 2.24
3901 5239 9.062524 AGTAATAATTCACAACAGCACACTAAA 57.937 29.630 0.00 0.00 0.00 1.85
3902 5240 9.672086 GTAATAATTCACAACAGCACACTAAAA 57.328 29.630 0.00 0.00 0.00 1.52
3903 5241 8.574196 AATAATTCACAACAGCACACTAAAAC 57.426 30.769 0.00 0.00 0.00 2.43
3904 5242 3.666883 TCACAACAGCACACTAAAACG 57.333 42.857 0.00 0.00 0.00 3.60
3905 5243 2.353269 TCACAACAGCACACTAAAACGG 59.647 45.455 0.00 0.00 0.00 4.44
3906 5244 2.096819 CACAACAGCACACTAAAACGGT 59.903 45.455 0.00 0.00 0.00 4.83
3907 5245 3.310227 CACAACAGCACACTAAAACGGTA 59.690 43.478 0.00 0.00 0.00 4.02
3908 5246 3.940221 ACAACAGCACACTAAAACGGTAA 59.060 39.130 0.00 0.00 0.00 2.85
3909 5247 4.395542 ACAACAGCACACTAAAACGGTAAA 59.604 37.500 0.00 0.00 0.00 2.01
3910 5248 5.106237 ACAACAGCACACTAAAACGGTAAAA 60.106 36.000 0.00 0.00 0.00 1.52
3911 5249 4.912214 ACAGCACACTAAAACGGTAAAAC 58.088 39.130 0.00 0.00 0.00 2.43
3912 5250 4.201940 ACAGCACACTAAAACGGTAAAACC 60.202 41.667 0.00 0.00 34.05 3.27
3913 5251 4.035909 CAGCACACTAAAACGGTAAAACCT 59.964 41.667 0.00 0.00 35.66 3.50
3914 5252 5.236911 CAGCACACTAAAACGGTAAAACCTA 59.763 40.000 0.00 0.00 35.66 3.08
3915 5253 5.999600 AGCACACTAAAACGGTAAAACCTAT 59.000 36.000 0.00 0.00 35.66 2.57
3916 5254 6.148315 AGCACACTAAAACGGTAAAACCTATC 59.852 38.462 0.00 0.00 35.66 2.08
3917 5255 6.073112 GCACACTAAAACGGTAAAACCTATCA 60.073 38.462 0.00 0.00 35.66 2.15
3918 5256 7.361457 GCACACTAAAACGGTAAAACCTATCAT 60.361 37.037 0.00 0.00 35.66 2.45
3919 5257 8.173130 CACACTAAAACGGTAAAACCTATCATC 58.827 37.037 0.00 0.00 35.66 2.92
3920 5258 8.098912 ACACTAAAACGGTAAAACCTATCATCT 58.901 33.333 0.00 0.00 35.66 2.90
3921 5259 8.388103 CACTAAAACGGTAAAACCTATCATCTG 58.612 37.037 0.00 0.00 35.66 2.90
3922 5260 8.316214 ACTAAAACGGTAAAACCTATCATCTGA 58.684 33.333 0.00 0.00 35.66 3.27
3923 5261 7.611213 AAAACGGTAAAACCTATCATCTGAG 57.389 36.000 0.00 0.00 35.66 3.35
3924 5262 4.694339 ACGGTAAAACCTATCATCTGAGC 58.306 43.478 0.00 0.00 35.66 4.26
3925 5263 4.406003 ACGGTAAAACCTATCATCTGAGCT 59.594 41.667 0.00 0.00 35.66 4.09
3926 5264 5.104900 ACGGTAAAACCTATCATCTGAGCTT 60.105 40.000 0.00 0.00 35.66 3.74
3927 5265 5.463724 CGGTAAAACCTATCATCTGAGCTTC 59.536 44.000 0.00 0.00 35.66 3.86
3928 5266 6.587273 GGTAAAACCTATCATCTGAGCTTCT 58.413 40.000 0.00 0.00 34.73 2.85
3929 5267 6.481644 GGTAAAACCTATCATCTGAGCTTCTG 59.518 42.308 0.00 0.00 34.73 3.02
3930 5268 5.946942 AAACCTATCATCTGAGCTTCTGA 57.053 39.130 0.00 0.00 0.00 3.27
3931 5269 5.946942 AACCTATCATCTGAGCTTCTGAA 57.053 39.130 0.00 0.00 0.00 3.02
3932 5270 6.497624 AACCTATCATCTGAGCTTCTGAAT 57.502 37.500 0.00 0.00 0.00 2.57
3933 5271 6.497624 ACCTATCATCTGAGCTTCTGAATT 57.502 37.500 0.00 0.00 0.00 2.17
3934 5272 6.897986 ACCTATCATCTGAGCTTCTGAATTT 58.102 36.000 0.00 0.00 0.00 1.82
3935 5273 6.991531 ACCTATCATCTGAGCTTCTGAATTTC 59.008 38.462 0.00 0.00 0.00 2.17
3936 5274 7.147514 ACCTATCATCTGAGCTTCTGAATTTCT 60.148 37.037 0.00 0.00 0.00 2.52
3937 5275 7.385752 CCTATCATCTGAGCTTCTGAATTTCTC 59.614 40.741 0.00 0.00 0.00 2.87
3938 5276 5.426504 TCATCTGAGCTTCTGAATTTCTCC 58.573 41.667 0.00 0.00 0.00 3.71
3939 5277 4.897509 TCTGAGCTTCTGAATTTCTCCA 57.102 40.909 0.00 0.00 0.00 3.86
3940 5278 4.573900 TCTGAGCTTCTGAATTTCTCCAC 58.426 43.478 0.00 0.00 0.00 4.02
3941 5279 3.679389 TGAGCTTCTGAATTTCTCCACC 58.321 45.455 0.00 0.00 0.00 4.61
3942 5280 2.675348 GAGCTTCTGAATTTCTCCACCG 59.325 50.000 0.00 0.00 0.00 4.94
3943 5281 2.039084 AGCTTCTGAATTTCTCCACCGT 59.961 45.455 0.00 0.00 0.00 4.83
3944 5282 3.260884 AGCTTCTGAATTTCTCCACCGTA 59.739 43.478 0.00 0.00 0.00 4.02
3945 5283 4.000988 GCTTCTGAATTTCTCCACCGTAA 58.999 43.478 0.00 0.00 0.00 3.18
3946 5284 4.142881 GCTTCTGAATTTCTCCACCGTAAC 60.143 45.833 0.00 0.00 0.00 2.50
3947 5285 4.610605 TCTGAATTTCTCCACCGTAACA 57.389 40.909 0.00 0.00 0.00 2.41
3948 5286 4.566004 TCTGAATTTCTCCACCGTAACAG 58.434 43.478 0.00 0.00 0.00 3.16
3949 5287 3.071479 TGAATTTCTCCACCGTAACAGC 58.929 45.455 0.00 0.00 0.00 4.40
3950 5288 1.722011 ATTTCTCCACCGTAACAGCG 58.278 50.000 0.00 0.00 0.00 5.18
3951 5289 0.947180 TTTCTCCACCGTAACAGCGC 60.947 55.000 0.00 0.00 0.00 5.92
3952 5290 2.048597 CTCCACCGTAACAGCGCA 60.049 61.111 11.47 0.00 0.00 6.09
4050 5388 4.434713 CAAAACCTTGGGATTCCGTAAG 57.565 45.455 10.01 10.01 35.24 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.250313 CCTTATGAGGCCAGGATTAGATCTT 59.750 44.000 5.01 0.00 35.94 2.40
31 32 1.339727 GCCCTAGACACACCCGAAAAT 60.340 52.381 0.00 0.00 0.00 1.82
32 33 0.035739 GCCCTAGACACACCCGAAAA 59.964 55.000 0.00 0.00 0.00 2.29
33 34 1.122632 TGCCCTAGACACACCCGAAA 61.123 55.000 0.00 0.00 0.00 3.46
34 35 1.534476 TGCCCTAGACACACCCGAA 60.534 57.895 0.00 0.00 0.00 4.30
35 36 2.118732 TGCCCTAGACACACCCGA 59.881 61.111 0.00 0.00 0.00 5.14
36 37 2.264794 GTGCCCTAGACACACCCG 59.735 66.667 10.07 0.00 37.96 5.28
37 38 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
41 42 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
52 53 6.239120 GCAATAATTTGGGCACATCTAGATGT 60.239 38.462 28.95 28.95 41.56 3.06
53 54 6.154445 GCAATAATTTGGGCACATCTAGATG 58.846 40.000 27.63 27.63 37.77 2.90
54 55 5.834742 TGCAATAATTTGGGCACATCTAGAT 59.165 36.000 0.00 0.00 33.22 1.98
55 56 5.199723 TGCAATAATTTGGGCACATCTAGA 58.800 37.500 0.00 0.00 33.22 2.43
56 57 5.518848 TGCAATAATTTGGGCACATCTAG 57.481 39.130 0.00 0.00 33.22 2.43
63 64 5.421693 ACTTAGATGTGCAATAATTTGGGCA 59.578 36.000 0.00 0.00 33.22 5.36
64 65 5.750067 CACTTAGATGTGCAATAATTTGGGC 59.250 40.000 0.00 0.00 33.22 5.36
65 66 6.974622 GTCACTTAGATGTGCAATAATTTGGG 59.025 38.462 0.00 0.00 37.81 4.12
66 67 7.765307 AGTCACTTAGATGTGCAATAATTTGG 58.235 34.615 0.00 0.00 37.81 3.28
71 72 9.665719 TGATTAAGTCACTTAGATGTGCAATAA 57.334 29.630 0.00 0.00 37.81 1.40
72 73 9.665719 TTGATTAAGTCACTTAGATGTGCAATA 57.334 29.630 0.00 0.00 36.32 1.90
73 74 8.565896 TTGATTAAGTCACTTAGATGTGCAAT 57.434 30.769 0.00 0.00 36.32 3.56
74 75 7.361201 GCTTGATTAAGTCACTTAGATGTGCAA 60.361 37.037 0.00 0.00 36.32 4.08
75 76 6.092670 GCTTGATTAAGTCACTTAGATGTGCA 59.907 38.462 0.00 0.00 36.32 4.57
76 77 6.092670 TGCTTGATTAAGTCACTTAGATGTGC 59.907 38.462 0.00 2.82 36.32 4.57
77 78 7.601073 TGCTTGATTAAGTCACTTAGATGTG 57.399 36.000 0.00 0.00 36.32 3.21
78 79 9.890629 TTATGCTTGATTAAGTCACTTAGATGT 57.109 29.630 0.00 0.00 36.32 3.06
106 107 7.985184 GTGTGGGTATTTTCTTTTCTCCTTTTT 59.015 33.333 0.00 0.00 0.00 1.94
107 108 7.497595 GTGTGGGTATTTTCTTTTCTCCTTTT 58.502 34.615 0.00 0.00 0.00 2.27
108 109 6.238925 CGTGTGGGTATTTTCTTTTCTCCTTT 60.239 38.462 0.00 0.00 0.00 3.11
109 110 5.240844 CGTGTGGGTATTTTCTTTTCTCCTT 59.759 40.000 0.00 0.00 0.00 3.36
110 111 4.760204 CGTGTGGGTATTTTCTTTTCTCCT 59.240 41.667 0.00 0.00 0.00 3.69
111 112 4.758165 TCGTGTGGGTATTTTCTTTTCTCC 59.242 41.667 0.00 0.00 0.00 3.71
112 113 5.934935 TCGTGTGGGTATTTTCTTTTCTC 57.065 39.130 0.00 0.00 0.00 2.87
113 114 6.715264 AGATTCGTGTGGGTATTTTCTTTTCT 59.285 34.615 0.00 0.00 0.00 2.52
114 115 6.909909 AGATTCGTGTGGGTATTTTCTTTTC 58.090 36.000 0.00 0.00 0.00 2.29
115 116 6.715264 AGAGATTCGTGTGGGTATTTTCTTTT 59.285 34.615 0.00 0.00 0.00 2.27
116 117 6.149474 CAGAGATTCGTGTGGGTATTTTCTTT 59.851 38.462 0.00 0.00 0.00 2.52
117 118 5.643777 CAGAGATTCGTGTGGGTATTTTCTT 59.356 40.000 0.00 0.00 0.00 2.52
118 119 5.178797 CAGAGATTCGTGTGGGTATTTTCT 58.821 41.667 0.00 0.00 0.00 2.52
119 120 4.201822 GCAGAGATTCGTGTGGGTATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
120 121 3.689649 GCAGAGATTCGTGTGGGTATTTT 59.310 43.478 0.00 0.00 0.00 1.82
121 122 3.270877 GCAGAGATTCGTGTGGGTATTT 58.729 45.455 0.00 0.00 0.00 1.40
122 123 2.738643 CGCAGAGATTCGTGTGGGTATT 60.739 50.000 0.00 0.00 0.00 1.89
123 124 1.202417 CGCAGAGATTCGTGTGGGTAT 60.202 52.381 0.00 0.00 0.00 2.73
124 125 0.172578 CGCAGAGATTCGTGTGGGTA 59.827 55.000 0.00 0.00 0.00 3.69
125 126 1.079819 CGCAGAGATTCGTGTGGGT 60.080 57.895 0.00 0.00 0.00 4.51
126 127 0.172578 TACGCAGAGATTCGTGTGGG 59.827 55.000 7.32 3.96 39.46 4.61
127 128 1.920574 CTTACGCAGAGATTCGTGTGG 59.079 52.381 7.32 0.00 39.46 4.17
128 129 2.863739 TCTTACGCAGAGATTCGTGTG 58.136 47.619 0.00 2.24 39.46 3.82
129 130 3.128764 TGATCTTACGCAGAGATTCGTGT 59.871 43.478 0.00 0.00 39.46 4.49
130 131 3.695816 TGATCTTACGCAGAGATTCGTG 58.304 45.455 0.00 0.00 39.46 4.35
131 132 4.371855 TTGATCTTACGCAGAGATTCGT 57.628 40.909 0.00 0.00 42.09 3.85
132 133 4.978580 TCATTGATCTTACGCAGAGATTCG 59.021 41.667 0.00 0.00 34.13 3.34
133 134 5.750547 TGTCATTGATCTTACGCAGAGATTC 59.249 40.000 0.00 0.00 34.13 2.52
134 135 5.521735 GTGTCATTGATCTTACGCAGAGATT 59.478 40.000 0.00 0.00 34.13 2.40
135 136 5.046529 GTGTCATTGATCTTACGCAGAGAT 58.953 41.667 0.00 0.00 36.60 2.75
136 137 4.082245 TGTGTCATTGATCTTACGCAGAGA 60.082 41.667 0.00 0.00 33.87 3.10
137 138 4.176271 TGTGTCATTGATCTTACGCAGAG 58.824 43.478 0.00 0.00 33.87 3.35
138 139 4.186856 TGTGTCATTGATCTTACGCAGA 57.813 40.909 0.00 0.00 35.33 4.26
139 140 4.627035 TCTTGTGTCATTGATCTTACGCAG 59.373 41.667 0.00 0.00 34.21 5.18
140 141 4.388773 GTCTTGTGTCATTGATCTTACGCA 59.611 41.667 0.00 0.00 0.00 5.24
141 142 4.627467 AGTCTTGTGTCATTGATCTTACGC 59.373 41.667 0.00 0.00 0.00 4.42
142 143 6.712241 AAGTCTTGTGTCATTGATCTTACG 57.288 37.500 0.00 0.00 0.00 3.18
143 144 8.988064 TCTAAGTCTTGTGTCATTGATCTTAC 57.012 34.615 0.00 0.00 0.00 2.34
144 145 9.591792 CATCTAAGTCTTGTGTCATTGATCTTA 57.408 33.333 0.00 0.00 0.00 2.10
145 146 8.099537 ACATCTAAGTCTTGTGTCATTGATCTT 58.900 33.333 0.00 0.00 0.00 2.40
146 147 7.548427 CACATCTAAGTCTTGTGTCATTGATCT 59.452 37.037 0.00 0.00 36.77 2.75
147 148 7.675870 GCACATCTAAGTCTTGTGTCATTGATC 60.676 40.741 4.70 0.00 42.11 2.92
148 149 6.093219 GCACATCTAAGTCTTGTGTCATTGAT 59.907 38.462 4.70 0.00 42.11 2.57
149 150 5.409520 GCACATCTAAGTCTTGTGTCATTGA 59.590 40.000 4.70 0.00 42.11 2.57
150 151 5.179929 TGCACATCTAAGTCTTGTGTCATTG 59.820 40.000 4.70 0.00 42.11 2.82
151 152 5.308014 TGCACATCTAAGTCTTGTGTCATT 58.692 37.500 4.70 0.00 42.11 2.57
152 153 4.898320 TGCACATCTAAGTCTTGTGTCAT 58.102 39.130 4.70 0.00 42.11 3.06
153 154 4.335400 TGCACATCTAAGTCTTGTGTCA 57.665 40.909 4.70 1.58 42.11 3.58
154 155 5.869753 ATTGCACATCTAAGTCTTGTGTC 57.130 39.130 4.70 0.00 42.11 3.67
155 156 6.467677 AGTATTGCACATCTAAGTCTTGTGT 58.532 36.000 4.70 0.70 42.11 3.72
156 157 6.974932 AGTATTGCACATCTAAGTCTTGTG 57.025 37.500 0.00 0.00 42.80 3.33
157 158 9.102757 CATAAGTATTGCACATCTAAGTCTTGT 57.897 33.333 0.00 0.00 0.00 3.16
158 159 8.554528 CCATAAGTATTGCACATCTAAGTCTTG 58.445 37.037 0.00 0.00 0.00 3.02
159 160 7.227512 GCCATAAGTATTGCACATCTAAGTCTT 59.772 37.037 0.00 0.00 0.00 3.01
160 161 6.708054 GCCATAAGTATTGCACATCTAAGTCT 59.292 38.462 0.00 0.00 0.00 3.24
161 162 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
162 163 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
163 164 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
171 172 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
172 173 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
198 199 9.849607 GAAGAAAATAAACAGTTTTGCTAAAGC 57.150 29.630 3.25 0.00 42.50 3.51
208 209 9.811995 GGGTTGTAAAGAAGAAAATAAACAGTT 57.188 29.630 0.00 0.00 0.00 3.16
209 210 8.973182 TGGGTTGTAAAGAAGAAAATAAACAGT 58.027 29.630 0.00 0.00 0.00 3.55
210 211 9.981114 ATGGGTTGTAAAGAAGAAAATAAACAG 57.019 29.630 0.00 0.00 0.00 3.16
211 212 9.974980 GATGGGTTGTAAAGAAGAAAATAAACA 57.025 29.630 0.00 0.00 0.00 2.83
212 213 9.974980 TGATGGGTTGTAAAGAAGAAAATAAAC 57.025 29.630 0.00 0.00 0.00 2.01
213 214 9.974980 GTGATGGGTTGTAAAGAAGAAAATAAA 57.025 29.630 0.00 0.00 0.00 1.40
214 215 9.137459 TGTGATGGGTTGTAAAGAAGAAAATAA 57.863 29.630 0.00 0.00 0.00 1.40
215 216 8.573035 GTGTGATGGGTTGTAAAGAAGAAAATA 58.427 33.333 0.00 0.00 0.00 1.40
216 217 7.433680 GTGTGATGGGTTGTAAAGAAGAAAAT 58.566 34.615 0.00 0.00 0.00 1.82
256 257 5.175856 CACGAAATCTTAGTAGCCTACATGC 59.824 44.000 4.41 0.00 0.00 4.06
258 259 5.221461 CCCACGAAATCTTAGTAGCCTACAT 60.221 44.000 4.41 0.00 0.00 2.29
265 266 3.536956 TGCCCCACGAAATCTTAGTAG 57.463 47.619 0.00 0.00 0.00 2.57
269 270 2.817258 CAGTTTGCCCCACGAAATCTTA 59.183 45.455 0.00 0.00 0.00 2.10
275 276 0.106918 AACTCAGTTTGCCCCACGAA 60.107 50.000 0.00 0.00 0.00 3.85
277 278 1.654220 CAACTCAGTTTGCCCCACG 59.346 57.895 0.00 0.00 0.00 4.94
293 294 4.225942 AGAGTCTGTAAATGCTCCATCCAA 59.774 41.667 0.00 0.00 0.00 3.53
383 388 2.888834 TTCCCTTTGCTTGTTTGAGC 57.111 45.000 0.00 0.00 43.00 4.26
397 402 0.407139 AGCAATCACTGGCTTTCCCT 59.593 50.000 0.00 0.00 36.92 4.20
399 404 1.831580 AGAGCAATCACTGGCTTTCC 58.168 50.000 0.00 0.00 41.22 3.13
449 479 3.679502 TCACGTGTTGATCATGATCACAC 59.320 43.478 33.60 33.60 46.49 3.82
526 560 3.729217 CGCTCATATGATTTTGCAGCTTG 59.271 43.478 5.72 0.00 0.00 4.01
534 568 4.989279 AAAGGTGCGCTCATATGATTTT 57.011 36.364 9.73 0.00 0.00 1.82
559 651 1.351430 CTTGTTCGCGGCGATCTCAA 61.351 55.000 26.95 25.39 35.23 3.02
572 664 3.366781 GGAATTCTTGCCTCTGCTTGTTC 60.367 47.826 5.23 0.00 38.71 3.18
618 712 8.780249 TCTTTACCTTTGTTTTTAGGATTCTCG 58.220 33.333 0.00 0.00 35.45 4.04
661 755 2.094675 CCTGCTCCCAATCGAAACAAT 58.905 47.619 0.00 0.00 0.00 2.71
717 811 5.003804 ACAGAGCTTTCATTTGATACCGTT 58.996 37.500 0.00 0.00 0.00 4.44
722 816 6.649141 ACGTACAACAGAGCTTTCATTTGATA 59.351 34.615 0.00 0.00 0.00 2.15
744 838 3.548818 GGAGTACGACAACTTGTGTACGT 60.549 47.826 18.64 15.30 41.96 3.57
745 839 2.975851 GGAGTACGACAACTTGTGTACG 59.024 50.000 18.64 11.72 41.96 3.67
746 840 3.243501 TGGGAGTACGACAACTTGTGTAC 60.244 47.826 17.85 17.85 41.96 2.90
747 841 2.957680 TGGGAGTACGACAACTTGTGTA 59.042 45.455 0.00 0.34 41.96 2.90
748 842 1.758280 TGGGAGTACGACAACTTGTGT 59.242 47.619 0.00 1.25 45.74 3.72
766 860 0.872388 GCAGTAAAAGGACACGGTGG 59.128 55.000 13.48 0.00 0.00 4.61
768 862 1.134340 TGTGCAGTAAAAGGACACGGT 60.134 47.619 0.00 0.00 32.19 4.83
771 865 6.677913 ACAAATATGTGCAGTAAAAGGACAC 58.322 36.000 0.00 0.00 40.14 3.67
773 867 7.114811 CACAACAAATATGTGCAGTAAAAGGAC 59.885 37.037 0.00 0.00 41.42 3.85
798 892 3.812156 TGGAAAGTTTGACTCGAGACA 57.188 42.857 21.68 17.35 0.00 3.41
886 981 1.071699 TGGCTACACCTGTCAAGTTCC 59.928 52.381 0.00 0.00 40.22 3.62
901 996 5.953548 TGTGATGTAAAGTAGTAGGTGGCTA 59.046 40.000 0.00 0.00 0.00 3.93
902 997 4.775780 TGTGATGTAAAGTAGTAGGTGGCT 59.224 41.667 0.00 0.00 0.00 4.75
903 998 5.080969 TGTGATGTAAAGTAGTAGGTGGC 57.919 43.478 0.00 0.00 0.00 5.01
904 999 6.594159 CCTTTGTGATGTAAAGTAGTAGGTGG 59.406 42.308 0.00 0.00 34.20 4.61
906 1001 6.171213 GCCTTTGTGATGTAAAGTAGTAGGT 58.829 40.000 0.00 0.00 34.20 3.08
907 1002 6.170506 TGCCTTTGTGATGTAAAGTAGTAGG 58.829 40.000 0.00 0.00 34.20 3.18
908 1003 6.183360 GCTGCCTTTGTGATGTAAAGTAGTAG 60.183 42.308 0.00 0.00 34.20 2.57
910 1005 4.455877 GCTGCCTTTGTGATGTAAAGTAGT 59.544 41.667 0.00 0.00 34.20 2.73
980 1514 3.127533 GGCGACCCAGTGTGATGC 61.128 66.667 0.00 0.00 0.00 3.91
1070 1621 0.549469 TGAGAGACCCATGCATGCAT 59.451 50.000 27.46 27.46 37.08 3.96
1071 1622 0.107361 CTGAGAGACCCATGCATGCA 60.107 55.000 25.04 25.04 0.00 3.96
1178 1733 2.963101 AGCTTATACCATAGACGCACCA 59.037 45.455 0.00 0.00 0.00 4.17
1204 1759 0.250858 CACACCAGCATCCTCAACCA 60.251 55.000 0.00 0.00 0.00 3.67
1213 1768 2.438975 CGCCATCCACACCAGCAT 60.439 61.111 0.00 0.00 0.00 3.79
1442 1997 1.899814 AGAAGATGTACAAGGCGACCA 59.100 47.619 0.00 0.00 0.00 4.02
1518 2073 1.815003 CTGAACTTGAGGATGCCAACC 59.185 52.381 0.00 0.00 0.00 3.77
1596 2151 2.168521 TCCTTTATCTCTTGGCACGGAG 59.831 50.000 9.57 9.57 33.41 4.63
1611 2166 4.080356 CACCATGGAGTGAAGGATCCTTTA 60.080 45.833 27.68 21.26 40.34 1.85
1621 2176 0.323633 CATGCCCACCATGGAGTGAA 60.324 55.000 21.47 0.00 46.09 3.18
1648 2203 6.279513 TGAAATAAAATCCAAGCAATCCGT 57.720 33.333 0.00 0.00 0.00 4.69
1683 2238 2.533266 TGTGTTCTTGCTCTCCTGTC 57.467 50.000 0.00 0.00 0.00 3.51
1685 2240 3.611057 GCATTTGTGTTCTTGCTCTCCTG 60.611 47.826 0.00 0.00 32.41 3.86
1693 2248 4.869297 TGAAAGGTTGCATTTGTGTTCTTG 59.131 37.500 0.00 0.00 0.00 3.02
1719 2274 5.355350 CCTTGCCTCTTTTACATAGTCTTGG 59.645 44.000 0.00 0.00 0.00 3.61
1742 2297 7.201839 CCTCCTTCTCTTGTACTACAATACTCC 60.202 44.444 2.02 0.00 37.48 3.85
1746 2301 7.559170 GGTACCTCCTTCTCTTGTACTACAATA 59.441 40.741 4.06 0.00 37.48 1.90
1748 2303 5.713861 GGTACCTCCTTCTCTTGTACTACAA 59.286 44.000 4.06 1.67 36.54 2.41
1749 2304 5.222192 TGGTACCTCCTTCTCTTGTACTACA 60.222 44.000 14.36 0.00 37.07 2.74
1750 2305 5.259632 TGGTACCTCCTTCTCTTGTACTAC 58.740 45.833 14.36 0.00 37.07 2.73
1752 2307 4.399483 TGGTACCTCCTTCTCTTGTACT 57.601 45.455 14.36 0.00 37.07 2.73
1784 2345 2.311688 GATGTGGTCCAGCCTACGGG 62.312 65.000 0.00 0.00 38.35 5.28
1787 2348 0.905357 ACAGATGTGGTCCAGCCTAC 59.095 55.000 0.00 0.00 38.35 3.18
1788 2349 2.543037 TACAGATGTGGTCCAGCCTA 57.457 50.000 0.00 0.00 38.35 3.93
1805 2400 5.220710 AGATAGGTCCACAAGCATCATAC 57.779 43.478 0.00 0.00 0.00 2.39
1828 2423 2.605295 ACGAATGGGGTCCCGACA 60.605 61.111 0.48 0.00 39.42 4.35
1829 2424 1.896122 AAGACGAATGGGGTCCCGAC 61.896 60.000 0.48 0.00 39.42 4.79
1834 2429 5.290386 CAGATAGTTAAGACGAATGGGGTC 58.710 45.833 0.00 0.00 34.62 4.46
1837 2432 4.693283 TGCAGATAGTTAAGACGAATGGG 58.307 43.478 0.00 0.00 0.00 4.00
1839 2434 8.581057 AATACTGCAGATAGTTAAGACGAATG 57.419 34.615 23.35 0.00 32.19 2.67
1840 2435 9.250624 GAAATACTGCAGATAGTTAAGACGAAT 57.749 33.333 23.35 0.00 32.19 3.34
1886 2481 3.311966 GTCCGTAGACCTTTGTGTACAC 58.688 50.000 19.36 19.36 40.34 2.90
1889 2484 2.030893 CACGTCCGTAGACCTTTGTGTA 60.031 50.000 0.00 0.00 40.12 2.90
1898 2493 0.668401 CCAAACCCACGTCCGTAGAC 60.668 60.000 0.00 0.00 39.83 2.59
1900 2495 1.375013 CCCAAACCCACGTCCGTAG 60.375 63.158 0.00 0.00 0.00 3.51
1929 2524 6.586344 TGATCTCATTCTGGTGTAAAGGATC 58.414 40.000 0.00 0.00 0.00 3.36
1935 2530 6.806668 TGGTATGATCTCATTCTGGTGTAA 57.193 37.500 0.00 0.00 37.76 2.41
1943 2538 6.825610 AGAGGAGTTTGGTATGATCTCATTC 58.174 40.000 0.00 0.00 37.76 2.67
1946 2541 5.104776 CCAAGAGGAGTTTGGTATGATCTCA 60.105 44.000 0.00 0.00 40.15 3.27
1954 2549 4.843728 CATAAGCCAAGAGGAGTTTGGTA 58.156 43.478 5.96 0.00 45.48 3.25
1963 2558 2.286872 CACTGAGCATAAGCCAAGAGG 58.713 52.381 0.00 0.00 43.56 3.69
1964 2559 2.676839 CACACTGAGCATAAGCCAAGAG 59.323 50.000 0.00 0.00 43.56 2.85
1974 2569 2.107204 AGGAAGAAACCACACTGAGCAT 59.893 45.455 0.00 0.00 0.00 3.79
1982 2577 2.944129 CCAGGAAAGGAAGAAACCACA 58.056 47.619 0.00 0.00 0.00 4.17
1985 2580 1.203063 AGGCCAGGAAAGGAAGAAACC 60.203 52.381 5.01 0.00 0.00 3.27
1986 2581 2.294449 AGGCCAGGAAAGGAAGAAAC 57.706 50.000 5.01 0.00 0.00 2.78
1989 2584 0.405585 CCAAGGCCAGGAAAGGAAGA 59.594 55.000 5.01 0.00 0.00 2.87
2007 2602 1.377856 GAAGAGCACCAGGGAAGCC 60.378 63.158 0.00 0.00 0.00 4.35
2106 2701 4.700365 GCAAACCAGGCGGCGAAC 62.700 66.667 12.98 1.56 34.57 3.95
2111 2706 4.974721 AGGGTGCAAACCAGGCGG 62.975 66.667 10.96 0.00 38.77 6.13
2112 2707 2.026945 AAAAGGGTGCAAACCAGGCG 62.027 55.000 10.96 0.00 0.00 5.52
2113 2708 0.180171 AAAAAGGGTGCAAACCAGGC 59.820 50.000 10.96 0.00 0.00 4.85
2114 2709 1.952193 CAAAAAGGGTGCAAACCAGG 58.048 50.000 10.96 0.00 0.00 4.45
2115 2710 1.298602 GCAAAAAGGGTGCAAACCAG 58.701 50.000 10.96 0.00 41.80 4.00
2116 2711 0.460987 CGCAAAAAGGGTGCAAACCA 60.461 50.000 10.96 0.00 42.33 3.67
2117 2712 1.771073 GCGCAAAAAGGGTGCAAACC 61.771 55.000 0.30 0.43 42.33 3.27
2151 2746 1.151668 CAAGTTTGAGTCTGCCCGAG 58.848 55.000 0.00 0.00 0.00 4.63
2153 2748 0.886490 AGCAAGTTTGAGTCTGCCCG 60.886 55.000 0.00 0.00 0.00 6.13
2158 2753 3.142174 GCCAAGTAGCAAGTTTGAGTCT 58.858 45.455 0.00 0.00 0.00 3.24
2159 2754 2.878406 TGCCAAGTAGCAAGTTTGAGTC 59.122 45.455 0.00 0.00 40.56 3.36
2199 2794 4.557296 CGAGCACAAAATGACATGAGGTTT 60.557 41.667 0.00 0.00 0.00 3.27
2234 2829 0.540365 CATGAAAGTGGTGGTGGGCT 60.540 55.000 0.00 0.00 0.00 5.19
2235 2830 0.539438 TCATGAAAGTGGTGGTGGGC 60.539 55.000 0.00 0.00 0.00 5.36
2236 2831 1.993956 TTCATGAAAGTGGTGGTGGG 58.006 50.000 5.45 0.00 0.00 4.61
2237 2832 4.605640 ATTTTCATGAAAGTGGTGGTGG 57.394 40.909 19.64 0.00 0.00 4.61
2238 2833 5.358922 ACAATTTTCATGAAAGTGGTGGTG 58.641 37.500 25.65 18.25 45.11 4.17
2239 2834 5.612725 ACAATTTTCATGAAAGTGGTGGT 57.387 34.783 25.65 16.06 45.11 4.16
2347 2942 4.188462 CACCCATCTTTTATGTACTCGCA 58.812 43.478 0.00 0.00 0.00 5.10
2468 3084 5.186021 ACAGTGTCATCGAATCCTAGTTCTT 59.814 40.000 0.00 0.00 0.00 2.52
2469 3085 4.707448 ACAGTGTCATCGAATCCTAGTTCT 59.293 41.667 0.00 0.00 0.00 3.01
2470 3086 5.000012 ACAGTGTCATCGAATCCTAGTTC 58.000 43.478 0.00 0.00 0.00 3.01
2487 3103 1.093972 TGTGCCACACAAGAACAGTG 58.906 50.000 0.00 0.00 41.69 3.66
2548 3167 0.397941 TCTCCACTTGGACCTTGCTG 59.602 55.000 0.00 0.00 39.78 4.41
2549 3168 0.398318 GTCTCCACTTGGACCTTGCT 59.602 55.000 0.00 0.00 39.78 3.91
2550 3169 0.108585 TGTCTCCACTTGGACCTTGC 59.891 55.000 0.00 0.00 39.78 4.01
2614 3233 2.744202 GCATCTCAGGACACACGAAAAT 59.256 45.455 0.00 0.00 0.00 1.82
2682 3301 1.019673 CCGTGAGAATGGCCTTGATG 58.980 55.000 3.32 0.00 0.00 3.07
2690 3309 0.108138 GTCCTGGTCCGTGAGAATGG 60.108 60.000 0.00 0.00 0.00 3.16
2707 3326 1.718757 GCAATGCCCTGTGGATCGTC 61.719 60.000 0.00 0.00 0.00 4.20
2709 3328 1.750018 TGCAATGCCCTGTGGATCG 60.750 57.895 1.53 0.00 0.00 3.69
2717 3336 3.650298 ATCTGCCGTGCAATGCCCT 62.650 57.895 1.53 0.00 38.41 5.19
2718 3337 2.618312 GAATCTGCCGTGCAATGCCC 62.618 60.000 1.53 0.00 38.41 5.36
2719 3338 1.226773 GAATCTGCCGTGCAATGCC 60.227 57.895 1.53 0.00 38.41 4.40
2731 3350 5.003692 TCTCGTTCCATGAGAAGAATCTG 57.996 43.478 0.00 0.00 37.32 2.90
2732 3351 5.599732 CATCTCGTTCCATGAGAAGAATCT 58.400 41.667 0.00 0.00 42.89 2.40
2750 3369 5.183904 ACCACAATTCCTTTAAGTGCATCTC 59.816 40.000 0.00 0.00 36.63 2.75
2756 3375 6.391227 ACTGAACCACAATTCCTTTAAGTG 57.609 37.500 0.00 0.00 39.09 3.16
2767 3392 3.485394 TGTGTGCATACTGAACCACAAT 58.515 40.909 15.05 0.00 39.60 2.71
2779 3404 1.535028 CTTGGCGAGTTTGTGTGCATA 59.465 47.619 0.00 0.00 0.00 3.14
2995 3620 3.638627 CCTTCTTTTTCAAGAGGCTGGTT 59.361 43.478 0.00 0.00 40.28 3.67
3108 3801 4.074970 AGCACACTCAAGTCAAAATAGGG 58.925 43.478 0.00 0.00 0.00 3.53
3119 3813 5.401550 TCAAAAAGAAACAGCACACTCAAG 58.598 37.500 0.00 0.00 0.00 3.02
3134 3828 4.388469 GCAAAGCACACAAGTTCAAAAAGA 59.612 37.500 0.00 0.00 0.00 2.52
3135 3829 4.389687 AGCAAAGCACACAAGTTCAAAAAG 59.610 37.500 0.00 0.00 0.00 2.27
3141 3835 2.860136 GGAAAGCAAAGCACACAAGTTC 59.140 45.455 0.00 0.00 0.00 3.01
3162 3858 1.298713 ACGCTCGCGCTCTCTTATG 60.299 57.895 11.65 0.00 44.19 1.90
3217 3915 1.781555 CGAACATGCTCGACACCAC 59.218 57.895 13.15 0.00 41.44 4.16
3324 4024 1.128692 GCTACAACAATTCGCTCGCTT 59.871 47.619 0.00 0.00 0.00 4.68
3333 4033 2.825532 GGTCATGGGTGCTACAACAATT 59.174 45.455 0.00 0.00 0.00 2.32
3356 4064 2.863809 ACAAGATCAAACAGACCCCAC 58.136 47.619 0.00 0.00 0.00 4.61
3384 4116 6.823182 ACATCACATAGCACACAAATAGCTTA 59.177 34.615 0.00 0.00 39.68 3.09
3385 4117 5.649395 ACATCACATAGCACACAAATAGCTT 59.351 36.000 0.00 0.00 39.68 3.74
3400 4135 0.108377 AACTCGCGGCACATCACATA 60.108 50.000 6.13 0.00 0.00 2.29
3401 4136 1.375908 AACTCGCGGCACATCACAT 60.376 52.632 6.13 0.00 0.00 3.21
3497 4270 9.583765 GTGGGTTTACTTCTTAGTATGAACTAG 57.416 37.037 0.00 0.00 39.36 2.57
3503 4276 8.561738 AATGTGTGGGTTTACTTCTTAGTATG 57.438 34.615 0.00 0.00 36.76 2.39
3509 4282 9.582648 AGTAATAAATGTGTGGGTTTACTTCTT 57.417 29.630 0.00 0.00 0.00 2.52
3582 4648 3.000727 GTGACACTATTTTGGGACGGAG 58.999 50.000 0.00 0.00 0.00 4.63
3583 4649 2.635915 AGTGACACTATTTTGGGACGGA 59.364 45.455 6.24 0.00 0.00 4.69
3584 4650 2.742053 CAGTGACACTATTTTGGGACGG 59.258 50.000 8.02 0.00 0.00 4.79
3585 4651 3.659786 TCAGTGACACTATTTTGGGACG 58.340 45.455 8.02 0.00 0.00 4.79
3586 4652 6.575162 AAATCAGTGACACTATTTTGGGAC 57.425 37.500 8.02 0.00 0.00 4.46
3587 4653 7.458397 ACTAAATCAGTGACACTATTTTGGGA 58.542 34.615 20.28 9.95 35.62 4.37
3588 4654 7.687941 ACTAAATCAGTGACACTATTTTGGG 57.312 36.000 20.28 15.60 35.62 4.12
3596 4662 9.998106 ACAACTTTATACTAAATCAGTGACACT 57.002 29.630 1.07 1.07 38.24 3.55
3611 4677 9.269415 CGTTGCTGGTTTAATACAACTTTATAC 57.731 33.333 0.00 0.00 38.72 1.47
3612 4678 7.964011 GCGTTGCTGGTTTAATACAACTTTATA 59.036 33.333 0.00 0.00 38.72 0.98
3613 4679 6.804783 GCGTTGCTGGTTTAATACAACTTTAT 59.195 34.615 0.00 0.00 38.72 1.40
3614 4680 6.016943 AGCGTTGCTGGTTTAATACAACTTTA 60.017 34.615 0.00 0.00 37.57 1.85
3615 4681 4.979815 GCGTTGCTGGTTTAATACAACTTT 59.020 37.500 0.00 0.00 38.72 2.66
3616 4682 4.277423 AGCGTTGCTGGTTTAATACAACTT 59.723 37.500 0.00 0.00 37.57 2.66
3617 4683 3.818773 AGCGTTGCTGGTTTAATACAACT 59.181 39.130 0.00 0.00 37.57 3.16
3618 4684 4.155310 AGCGTTGCTGGTTTAATACAAC 57.845 40.909 0.00 0.00 37.57 3.32
3619 4685 4.839668 AAGCGTTGCTGGTTTAATACAA 57.160 36.364 0.00 0.00 39.62 2.41
3620 4686 6.503589 AATAAGCGTTGCTGGTTTAATACA 57.496 33.333 0.00 0.00 39.62 2.29
3621 4687 7.201401 CCAAAATAAGCGTTGCTGGTTTAATAC 60.201 37.037 0.00 0.00 39.62 1.89
3622 4688 6.809196 CCAAAATAAGCGTTGCTGGTTTAATA 59.191 34.615 0.00 0.00 39.62 0.98
3623 4689 5.637387 CCAAAATAAGCGTTGCTGGTTTAAT 59.363 36.000 0.00 0.00 39.62 1.40
3624 4690 4.985409 CCAAAATAAGCGTTGCTGGTTTAA 59.015 37.500 0.00 0.00 39.62 1.52
3625 4691 4.551388 CCAAAATAAGCGTTGCTGGTTTA 58.449 39.130 0.00 0.00 39.62 2.01
3626 4692 3.389221 CCAAAATAAGCGTTGCTGGTTT 58.611 40.909 0.00 0.00 39.62 3.27
3627 4693 2.288763 CCCAAAATAAGCGTTGCTGGTT 60.289 45.455 0.00 0.00 39.62 3.67
3628 4694 1.272212 CCCAAAATAAGCGTTGCTGGT 59.728 47.619 0.00 0.00 39.62 4.00
3629 4695 1.543802 TCCCAAAATAAGCGTTGCTGG 59.456 47.619 0.00 0.00 39.62 4.85
3630 4696 2.595386 GTCCCAAAATAAGCGTTGCTG 58.405 47.619 0.00 0.00 39.62 4.41
3631 4697 1.199097 CGTCCCAAAATAAGCGTTGCT 59.801 47.619 0.00 0.00 42.56 3.91
3632 4698 1.613270 CGTCCCAAAATAAGCGTTGC 58.387 50.000 0.00 0.00 0.00 4.17
3633 4699 1.807742 TCCGTCCCAAAATAAGCGTTG 59.192 47.619 0.00 0.00 0.00 4.10
3634 4700 2.081462 CTCCGTCCCAAAATAAGCGTT 58.919 47.619 0.00 0.00 0.00 4.84
3635 4701 1.677820 CCTCCGTCCCAAAATAAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
3636 4702 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
3637 4703 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
3638 4704 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3639 4705 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3640 4706 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3641 4707 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3642 4708 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3643 4709 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3644 4710 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3645 4711 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3646 4712 1.685517 GTATTGTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
3647 4713 2.381911 TGTATTGTACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
3648 4714 4.460948 TTTGTATTGTACTCCCTCCGTC 57.539 45.455 0.00 0.00 0.00 4.79
3649 4715 4.895668 TTTTGTATTGTACTCCCTCCGT 57.104 40.909 0.00 0.00 0.00 4.69
3650 4716 5.424757 TGATTTTGTATTGTACTCCCTCCG 58.575 41.667 0.00 0.00 0.00 4.63
3651 4717 7.881775 ATTGATTTTGTATTGTACTCCCTCC 57.118 36.000 0.00 0.00 0.00 4.30
3752 5006 1.066573 AGGCTCATCGACCAGAGTTTG 60.067 52.381 11.55 0.00 34.39 2.93
3799 5120 5.791336 ACCGAGCAGATTTGTATAGATGA 57.209 39.130 0.00 0.00 0.00 2.92
3823 5144 5.054390 TCTGTTTTTGCATCGGTTATTCC 57.946 39.130 0.00 0.00 0.00 3.01
3846 5184 6.644347 ACACCTTCAGAAGTTCAATCGATAT 58.356 36.000 9.41 0.00 0.00 1.63
3852 5190 3.251004 GCGAACACCTTCAGAAGTTCAAT 59.749 43.478 9.41 0.00 40.14 2.57
3853 5191 2.612212 GCGAACACCTTCAGAAGTTCAA 59.388 45.455 9.41 0.00 40.14 2.69
3887 5225 4.539509 TTACCGTTTTAGTGTGCTGTTG 57.460 40.909 0.00 0.00 0.00 3.33
3888 5226 5.334319 GTTTTACCGTTTTAGTGTGCTGTT 58.666 37.500 0.00 0.00 0.00 3.16
3889 5227 4.201940 GGTTTTACCGTTTTAGTGTGCTGT 60.202 41.667 0.00 0.00 0.00 4.40
3890 5228 4.035909 AGGTTTTACCGTTTTAGTGTGCTG 59.964 41.667 0.00 0.00 44.90 4.41
3891 5229 4.201657 AGGTTTTACCGTTTTAGTGTGCT 58.798 39.130 0.00 0.00 44.90 4.40
3892 5230 4.556942 AGGTTTTACCGTTTTAGTGTGC 57.443 40.909 0.00 0.00 44.90 4.57
3893 5231 7.424227 TGATAGGTTTTACCGTTTTAGTGTG 57.576 36.000 0.00 0.00 44.90 3.82
3894 5232 8.098912 AGATGATAGGTTTTACCGTTTTAGTGT 58.901 33.333 0.00 0.00 44.90 3.55
3895 5233 8.388103 CAGATGATAGGTTTTACCGTTTTAGTG 58.612 37.037 0.00 0.00 44.90 2.74
3896 5234 8.316214 TCAGATGATAGGTTTTACCGTTTTAGT 58.684 33.333 0.00 0.00 44.90 2.24
3897 5235 8.712285 TCAGATGATAGGTTTTACCGTTTTAG 57.288 34.615 0.00 0.00 44.90 1.85
3898 5236 7.279313 GCTCAGATGATAGGTTTTACCGTTTTA 59.721 37.037 0.00 0.00 44.90 1.52
3899 5237 6.093633 GCTCAGATGATAGGTTTTACCGTTTT 59.906 38.462 0.00 0.00 44.90 2.43
3900 5238 5.585047 GCTCAGATGATAGGTTTTACCGTTT 59.415 40.000 0.00 0.00 44.90 3.60
3901 5239 5.104900 AGCTCAGATGATAGGTTTTACCGTT 60.105 40.000 0.00 0.00 44.90 4.44
3902 5240 4.406003 AGCTCAGATGATAGGTTTTACCGT 59.594 41.667 0.00 0.00 44.90 4.83
3903 5241 4.950050 AGCTCAGATGATAGGTTTTACCG 58.050 43.478 0.00 0.00 44.90 4.02
3904 5242 6.481644 CAGAAGCTCAGATGATAGGTTTTACC 59.518 42.308 0.00 0.00 38.99 2.85
3905 5243 7.268586 TCAGAAGCTCAGATGATAGGTTTTAC 58.731 38.462 0.00 0.00 33.80 2.01
3906 5244 7.423844 TCAGAAGCTCAGATGATAGGTTTTA 57.576 36.000 0.00 0.00 33.80 1.52
3907 5245 6.305272 TCAGAAGCTCAGATGATAGGTTTT 57.695 37.500 0.00 0.00 33.80 2.43
3908 5246 5.946942 TCAGAAGCTCAGATGATAGGTTT 57.053 39.130 0.00 0.00 33.80 3.27
3909 5247 5.946942 TTCAGAAGCTCAGATGATAGGTT 57.053 39.130 0.00 0.00 36.21 3.50
3910 5248 6.497624 AATTCAGAAGCTCAGATGATAGGT 57.502 37.500 0.00 0.00 0.00 3.08
3911 5249 7.218614 AGAAATTCAGAAGCTCAGATGATAGG 58.781 38.462 0.00 0.00 0.00 2.57
3912 5250 7.385752 GGAGAAATTCAGAAGCTCAGATGATAG 59.614 40.741 10.80 0.00 0.00 2.08
3913 5251 7.147602 TGGAGAAATTCAGAAGCTCAGATGATA 60.148 37.037 10.80 0.00 0.00 2.15
3914 5252 6.056884 GGAGAAATTCAGAAGCTCAGATGAT 58.943 40.000 10.80 0.00 0.00 2.45
3915 5253 5.046087 TGGAGAAATTCAGAAGCTCAGATGA 60.046 40.000 10.80 0.00 0.00 2.92
3916 5254 5.064962 GTGGAGAAATTCAGAAGCTCAGATG 59.935 44.000 10.80 0.00 0.00 2.90
3917 5255 5.184711 GTGGAGAAATTCAGAAGCTCAGAT 58.815 41.667 10.80 0.00 0.00 2.90
3918 5256 4.564406 GGTGGAGAAATTCAGAAGCTCAGA 60.564 45.833 10.80 0.00 0.00 3.27
3919 5257 3.688673 GGTGGAGAAATTCAGAAGCTCAG 59.311 47.826 10.80 0.00 0.00 3.35
3920 5258 3.679389 GGTGGAGAAATTCAGAAGCTCA 58.321 45.455 10.80 0.00 0.00 4.26
3921 5259 2.675348 CGGTGGAGAAATTCAGAAGCTC 59.325 50.000 0.00 0.00 0.00 4.09
3922 5260 2.039084 ACGGTGGAGAAATTCAGAAGCT 59.961 45.455 0.00 0.00 0.00 3.74
3923 5261 2.427506 ACGGTGGAGAAATTCAGAAGC 58.572 47.619 0.00 0.00 0.00 3.86
3924 5262 4.994852 TGTTACGGTGGAGAAATTCAGAAG 59.005 41.667 0.00 0.00 0.00 2.85
3925 5263 4.963373 TGTTACGGTGGAGAAATTCAGAA 58.037 39.130 0.00 0.00 0.00 3.02
3926 5264 4.566004 CTGTTACGGTGGAGAAATTCAGA 58.434 43.478 0.00 0.00 0.00 3.27
3927 5265 3.125316 GCTGTTACGGTGGAGAAATTCAG 59.875 47.826 0.00 0.00 0.00 3.02
3928 5266 3.071479 GCTGTTACGGTGGAGAAATTCA 58.929 45.455 0.00 0.00 0.00 2.57
3929 5267 2.093783 CGCTGTTACGGTGGAGAAATTC 59.906 50.000 0.00 0.00 0.00 2.17
3930 5268 2.073816 CGCTGTTACGGTGGAGAAATT 58.926 47.619 0.00 0.00 0.00 1.82
3931 5269 1.722011 CGCTGTTACGGTGGAGAAAT 58.278 50.000 0.00 0.00 0.00 2.17
3932 5270 0.947180 GCGCTGTTACGGTGGAGAAA 60.947 55.000 0.00 0.00 0.00 2.52
3933 5271 1.373748 GCGCTGTTACGGTGGAGAA 60.374 57.895 0.00 0.00 0.00 2.87
3934 5272 2.260434 GCGCTGTTACGGTGGAGA 59.740 61.111 0.00 0.00 0.00 3.71
3935 5273 2.048597 TGCGCTGTTACGGTGGAG 60.049 61.111 9.73 0.00 0.00 3.86
3936 5274 2.048597 CTGCGCTGTTACGGTGGA 60.049 61.111 9.73 2.65 0.00 4.02
3937 5275 1.666553 TTCTGCGCTGTTACGGTGG 60.667 57.895 9.73 0.00 0.00 4.61
3938 5276 1.218875 TGTTCTGCGCTGTTACGGTG 61.219 55.000 9.73 0.00 0.00 4.94
3939 5277 0.531090 TTGTTCTGCGCTGTTACGGT 60.531 50.000 9.73 0.00 0.00 4.83
3940 5278 0.110823 GTTGTTCTGCGCTGTTACGG 60.111 55.000 9.73 0.00 0.00 4.02
3941 5279 0.579630 TGTTGTTCTGCGCTGTTACG 59.420 50.000 9.73 0.00 0.00 3.18
3942 5280 1.329292 TGTGTTGTTCTGCGCTGTTAC 59.671 47.619 9.73 11.65 0.00 2.50
3943 5281 1.329292 GTGTGTTGTTCTGCGCTGTTA 59.671 47.619 9.73 0.00 0.00 2.41
3944 5282 0.098728 GTGTGTTGTTCTGCGCTGTT 59.901 50.000 9.73 0.00 0.00 3.16
3945 5283 0.744414 AGTGTGTTGTTCTGCGCTGT 60.744 50.000 9.73 0.00 0.00 4.40
3946 5284 1.217001 TAGTGTGTTGTTCTGCGCTG 58.783 50.000 9.73 8.88 0.00 5.18
3947 5285 1.948104 TTAGTGTGTTGTTCTGCGCT 58.052 45.000 9.73 0.00 0.00 5.92
3948 5286 2.748461 TTTAGTGTGTTGTTCTGCGC 57.252 45.000 0.00 0.00 0.00 6.09
3949 5287 3.064820 AGGTTTTAGTGTGTTGTTCTGCG 59.935 43.478 0.00 0.00 0.00 5.18
3950 5288 4.632538 AGGTTTTAGTGTGTTGTTCTGC 57.367 40.909 0.00 0.00 0.00 4.26
3951 5289 6.459161 GGGTTAGGTTTTAGTGTGTTGTTCTG 60.459 42.308 0.00 0.00 0.00 3.02
3952 5290 5.591472 GGGTTAGGTTTTAGTGTGTTGTTCT 59.409 40.000 0.00 0.00 0.00 3.01
4050 5388 1.027792 AGACTCTCCGGAGCGTTCTC 61.028 60.000 26.95 15.05 42.98 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.