Multiple sequence alignment - TraesCS5D01G518500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G518500 chr5D 100.000 5471 0 0 1 5471 539876909 539871439 0.000000e+00 10104.0
1 TraesCS5D01G518500 chr5D 85.610 959 51 41 957 1885 540585067 540585968 0.000000e+00 926.0
2 TraesCS5D01G518500 chr5D 87.104 853 66 28 2126 2959 541910544 541909717 0.000000e+00 926.0
3 TraesCS5D01G518500 chr5D 85.731 855 89 17 2120 2959 540615405 540616241 0.000000e+00 872.0
4 TraesCS5D01G518500 chr5D 85.484 806 74 16 2951 3744 540587663 540588437 0.000000e+00 800.0
5 TraesCS5D01G518500 chr5D 85.144 801 76 16 2956 3744 540832210 540832979 0.000000e+00 780.0
6 TraesCS5D01G518500 chr5D 86.497 748 45 24 1172 1885 540829785 540830510 0.000000e+00 771.0
7 TraesCS5D01G518500 chr5D 85.753 744 66 19 2236 2959 541807907 541807184 0.000000e+00 750.0
8 TraesCS5D01G518500 chr5D 83.831 804 82 24 2956 3744 541909691 541908921 0.000000e+00 721.0
9 TraesCS5D01G518500 chr5D 83.518 813 77 29 2956 3744 541807158 541806379 0.000000e+00 706.0
10 TraesCS5D01G518500 chr5D 82.729 689 87 19 988 1667 541809879 541809214 7.900000e-163 584.0
11 TraesCS5D01G518500 chr5D 83.529 595 65 20 1525 2104 540614763 540615339 4.850000e-145 525.0
12 TraesCS5D01G518500 chr5D 92.493 373 16 6 2593 2954 540831809 540832180 1.750000e-144 523.0
13 TraesCS5D01G518500 chr5D 91.421 373 20 6 2593 2954 540587267 540587638 8.180000e-138 501.0
14 TraesCS5D01G518500 chr5D 83.493 521 74 5 2121 2640 540830823 540831332 4.960000e-130 475.0
15 TraesCS5D01G518500 chr5D 83.152 552 53 14 1588 2107 541809246 541808703 8.300000e-128 468.0
16 TraesCS5D01G518500 chr5D 82.700 526 76 10 2120 2640 541911112 541910597 2.320000e-123 453.0
17 TraesCS5D01G518500 chr5D 82.342 521 77 10 2124 2640 541808642 541808133 6.510000e-119 438.0
18 TraesCS5D01G518500 chr5D 81.903 536 65 18 1138 1667 541912190 541911681 1.820000e-114 424.0
19 TraesCS5D01G518500 chr5D 88.040 301 27 2 1588 1887 541911713 541911421 1.130000e-91 348.0
20 TraesCS5D01G518500 chr5D 80.328 488 67 13 1645 2107 540586296 540586779 5.250000e-90 342.0
21 TraesCS5D01G518500 chr5D 91.870 246 19 1 2951 3195 540616261 540616506 5.250000e-90 342.0
22 TraesCS5D01G518500 chr5D 79.960 504 69 10 1645 2119 541911096 541910596 5.250000e-90 342.0
23 TraesCS5D01G518500 chr5D 79.918 488 69 13 1645 2107 540830838 540831321 1.140000e-86 331.0
24 TraesCS5D01G518500 chr5D 82.022 356 38 12 3843 4197 540588431 540588761 4.170000e-71 279.0
25 TraesCS5D01G518500 chr5D 77.362 508 77 19 1645 2119 541910534 541910032 3.250000e-67 267.0
26 TraesCS5D01G518500 chr5D 86.695 233 27 4 1877 2107 540585990 540586220 7.030000e-64 255.0
27 TraesCS5D01G518500 chr5D 94.194 155 9 0 957 1111 540829426 540829580 2.550000e-58 237.0
28 TraesCS5D01G518500 chr5D 79.775 356 39 13 3843 4197 540832973 540833296 1.530000e-55 228.0
29 TraesCS5D01G518500 chr5D 84.434 212 28 4 3964 4170 541908716 541908505 2.580000e-48 204.0
30 TraesCS5D01G518500 chr5D 86.096 187 17 5 4373 4550 541805876 541805690 5.590000e-45 193.0
31 TraesCS5D01G518500 chr5D 85.484 186 16 6 4373 4549 541908408 541908225 3.370000e-42 183.0
32 TraesCS5D01G518500 chr5D 93.333 120 8 0 4200 4319 27461855 27461736 1.570000e-40 178.0
33 TraesCS5D01G518500 chr5D 82.018 228 16 13 4827 5034 541805570 541805348 2.620000e-38 171.0
34 TraesCS5D01G518500 chr5D 92.373 118 8 1 3846 3962 541806382 541806265 3.390000e-37 167.0
35 TraesCS5D01G518500 chr5D 92.373 118 8 1 3846 3962 541908924 541908807 3.390000e-37 167.0
36 TraesCS5D01G518500 chr5D 79.913 229 43 3 1881 2107 541807743 541807516 1.220000e-36 165.0
37 TraesCS5D01G518500 chr5D 93.333 60 3 1 5347 5406 541907711 541907653 2.710000e-13 87.9
38 TraesCS5D01G518500 chr5B 91.795 1889 95 24 1881 3744 681962855 681961002 0.000000e+00 2575.0
39 TraesCS5D01G518500 chr5B 88.326 1953 132 34 21 1887 681964821 681962879 0.000000e+00 2255.0
40 TraesCS5D01G518500 chr5B 89.750 1161 77 23 4318 5471 681960655 681959530 0.000000e+00 1447.0
41 TraesCS5D01G518500 chr5B 83.120 859 66 31 2120 2959 682849852 682850650 0.000000e+00 710.0
42 TraesCS5D01G518500 chr5B 94.186 344 14 4 3846 4183 681961005 681960662 2.260000e-143 520.0
43 TraesCS5D01G518500 chr5B 82.131 582 56 21 3191 3744 682850941 682851502 6.460000e-124 455.0
44 TraesCS5D01G518500 chr5B 82.079 558 62 23 3200 3744 683975296 683974764 5.030000e-120 442.0
45 TraesCS5D01G518500 chr5B 81.905 525 75 14 2121 2640 682849296 682849805 5.070000e-115 425.0
46 TraesCS5D01G518500 chr5B 86.559 372 40 9 2194 2556 683974262 683973892 8.540000e-108 401.0
47 TraesCS5D01G518500 chr5B 85.000 360 39 5 3843 4197 682851496 682851845 8.720000e-93 351.0
48 TraesCS5D01G518500 chr5B 83.630 281 40 2 1389 1668 683974717 683974442 5.440000e-65 259.0
49 TraesCS5D01G518500 chr5B 85.837 233 29 4 1877 2107 682849005 682849235 1.520000e-60 244.0
50 TraesCS5D01G518500 chr5B 88.119 202 15 3 957 1149 682848232 682848433 1.190000e-56 231.0
51 TraesCS5D01G518500 chr5B 85.000 200 21 2 1588 1786 683974451 683974260 1.550000e-45 195.0
52 TraesCS5D01G518500 chr5B 84.828 145 14 6 4840 4983 682852560 682852697 7.390000e-29 139.0
53 TraesCS5D01G518500 chr5B 88.119 101 6 4 4373 4467 683973687 683973587 1.250000e-21 115.0
54 TraesCS5D01G518500 chr5B 98.182 55 1 0 1814 1868 683975659 683975605 4.510000e-16 97.1
55 TraesCS5D01G518500 chr4A 88.044 1539 129 35 1 1506 628502033 628503549 0.000000e+00 1772.0
56 TraesCS5D01G518500 chr4A 93.044 1107 63 12 2647 3744 628504875 628505976 0.000000e+00 1605.0
57 TraesCS5D01G518500 chr4A 89.596 1163 67 25 4316 5471 628506323 628507438 0.000000e+00 1428.0
58 TraesCS5D01G518500 chr4A 86.316 855 86 20 2120 2959 627752638 627751800 0.000000e+00 902.0
59 TraesCS5D01G518500 chr4A 87.570 539 31 13 1658 2163 628503678 628504213 4.720000e-165 592.0
60 TraesCS5D01G518500 chr4A 94.186 344 17 3 3861 4201 628505982 628506325 6.280000e-144 521.0
61 TraesCS5D01G518500 chr4A 84.954 432 39 13 1703 2119 627753109 627752689 1.100000e-111 414.0
62 TraesCS5D01G518500 chr4A 87.395 238 25 5 2325 2561 628504605 628504838 9.030000e-68 268.0
63 TraesCS5D01G518500 chr4A 94.262 122 7 0 3726 3847 381221448 381221327 2.600000e-43 187.0
64 TraesCS5D01G518500 chr4A 94.958 119 5 1 3741 3859 239632814 239632697 9.360000e-43 185.0
65 TraesCS5D01G518500 chr4A 92.593 54 3 1 2066 2119 628504413 628504465 5.880000e-10 76.8
66 TraesCS5D01G518500 chr6A 82.609 368 40 11 1531 1876 604174599 604174964 2.480000e-78 303.0
67 TraesCS5D01G518500 chrUn 87.083 240 28 3 3957 4195 81904407 81904170 9.030000e-68 268.0
68 TraesCS5D01G518500 chr7A 86.250 240 30 3 3957 4195 251805289 251805052 1.960000e-64 257.0
69 TraesCS5D01G518500 chr2B 85.833 240 30 4 3957 4195 615888604 615888840 9.100000e-63 252.0
70 TraesCS5D01G518500 chr2B 94.828 116 6 0 4200 4315 87701609 87701494 1.210000e-41 182.0
71 TraesCS5D01G518500 chr1D 97.391 115 3 0 3739 3853 227655309 227655423 4.320000e-46 196.0
72 TraesCS5D01G518500 chr7D 98.198 111 2 0 3737 3847 4020216 4020106 1.550000e-45 195.0
73 TraesCS5D01G518500 chr2A 95.082 122 6 0 3733 3854 510433596 510433475 5.590000e-45 193.0
74 TraesCS5D01G518500 chr2A 93.333 120 8 0 4200 4319 148025342 148025461 1.570000e-40 178.0
75 TraesCS5D01G518500 chr3A 92.537 134 9 1 3720 3853 256934815 256934683 2.010000e-44 191.0
76 TraesCS5D01G518500 chr3A 93.750 128 6 2 3721 3848 648549035 648548910 2.010000e-44 191.0
77 TraesCS5D01G518500 chr3D 94.309 123 7 0 3734 3856 263778277 263778155 7.230000e-44 189.0
78 TraesCS5D01G518500 chr1B 94.958 119 6 0 4197 4315 643120911 643120793 2.600000e-43 187.0
79 TraesCS5D01G518500 chr6B 94.828 116 6 0 4200 4315 77108982 77108867 1.210000e-41 182.0
80 TraesCS5D01G518500 chr6B 90.698 43 0 4 361 400 717098566 717098607 3.000000e-03 54.7
81 TraesCS5D01G518500 chr1A 91.176 136 9 3 3713 3847 343396829 343396696 1.210000e-41 182.0
82 TraesCS5D01G518500 chr1A 92.562 121 9 0 4199 4319 385891910 385891790 2.030000e-39 174.0
83 TraesCS5D01G518500 chr6D 94.068 118 7 0 4198 4315 287025896 287026013 4.350000e-41 180.0
84 TraesCS5D01G518500 chr4B 94.068 118 7 0 4198 4315 34580035 34580152 4.350000e-41 180.0
85 TraesCS5D01G518500 chr5A 90.840 131 10 2 4192 4322 19975043 19974915 2.030000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G518500 chr5D 539871439 539876909 5470 True 10104.000000 10104 100.000000 1 5471 1 chr5D.!!$R2 5470
1 TraesCS5D01G518500 chr5D 540614763 540616506 1743 False 579.666667 872 87.043333 1525 3195 3 chr5D.!!$F2 1670
2 TraesCS5D01G518500 chr5D 540585067 540588761 3694 False 517.166667 926 85.260000 957 4197 6 chr5D.!!$F1 3240
3 TraesCS5D01G518500 chr5D 540829426 540833296 3870 False 477.857143 780 85.930571 957 4197 7 chr5D.!!$F3 3240
4 TraesCS5D01G518500 chr5D 541805348 541809879 4531 True 404.666667 750 84.210444 988 5034 9 chr5D.!!$R3 4046
5 TraesCS5D01G518500 chr5D 541907653 541912190 4537 True 374.809091 926 85.138545 1138 5406 11 chr5D.!!$R4 4268
6 TraesCS5D01G518500 chr5B 681959530 681964821 5291 True 1699.250000 2575 91.014250 21 5471 4 chr5B.!!$R1 5450
7 TraesCS5D01G518500 chr5B 682848232 682852697 4465 False 365.000000 710 84.420000 957 4983 7 chr5B.!!$F1 4026
8 TraesCS5D01G518500 chr5B 683973587 683975659 2072 True 251.516667 442 87.261500 1389 4467 6 chr5B.!!$R2 3078
9 TraesCS5D01G518500 chr4A 628502033 628507438 5405 False 894.685714 1772 90.346857 1 5471 7 chr4A.!!$F1 5470
10 TraesCS5D01G518500 chr4A 627751800 627753109 1309 True 658.000000 902 85.635000 1703 2959 2 chr4A.!!$R3 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 956 0.401395 AACCCCTTCTCACCTCCACA 60.401 55.0 0.00 0.0 0.00 4.17 F
1450 1688 0.401105 CCATCTCCAGGTGATCCCCT 60.401 60.0 0.59 0.0 34.21 4.79 F
2563 4203 0.099968 TCTATGTAGTGTCGTGCGGC 59.900 55.0 0.00 0.0 0.00 6.53 F
2564 4204 0.100682 CTATGTAGTGTCGTGCGGCT 59.899 55.0 0.00 0.0 0.00 5.52 F
2565 4205 0.099968 TATGTAGTGTCGTGCGGCTC 59.900 55.0 0.00 0.0 0.00 4.70 F
3755 5566 0.320374 CAACTACTCCCTCCGTTGCA 59.680 55.0 0.00 0.0 31.62 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2494 1.427368 AGCACTGACATAACCCCCAAA 59.573 47.619 0.00 0.0 0.00 3.28 R
3290 5064 1.308069 ATGCACATTCGGCACACCTC 61.308 55.000 0.00 0.0 45.23 3.85 R
4292 6211 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
4297 6216 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.0 44.66 4.30 R
4298 6217 0.846015 TATTACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.0 42.90 5.14 R
4617 6585 0.900182 AGACGGACATCAGAGCACCA 60.900 55.000 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.751175 GCACAACCTAAGCAACTGACATA 59.249 43.478 0.00 0.00 0.00 2.29
64 65 9.618890 CTGACATATTTTAAATCTCTTCCCAGA 57.381 33.333 0.00 0.00 0.00 3.86
144 145 7.936496 TTCAGATATGCAAACACTCCATTTA 57.064 32.000 0.00 0.00 0.00 1.40
164 165 0.828762 TTTGCCTGCCAACATCAGCT 60.829 50.000 0.00 0.00 31.97 4.24
188 189 7.439056 GCTGGTAATCCCAAATATTTGTCATTG 59.561 37.037 23.24 10.08 44.65 2.82
196 197 9.919416 TCCCAAATATTTGTCATTGAGAGATTA 57.081 29.630 23.24 0.00 36.45 1.75
330 331 9.208022 CACAATACTTTTGTACTGAATCTCTGA 57.792 33.333 0.00 0.00 35.86 3.27
333 334 9.778741 AATACTTTTGTACTGAATCTCTGACAA 57.221 29.630 0.00 0.00 37.78 3.18
379 384 9.508567 GCTTTGAAAAATAACAGAGTATCATCC 57.491 33.333 0.00 0.00 37.82 3.51
381 386 7.246674 TGAAAAATAACAGAGTATCATCCGC 57.753 36.000 0.00 0.00 37.82 5.54
387 392 5.551760 AACAGAGTATCATCCGCAAAAAG 57.448 39.130 0.00 0.00 37.82 2.27
441 447 2.727123 TGTAAACCCATCGATGCCAT 57.273 45.000 20.25 8.00 0.00 4.40
465 471 3.676172 TCCTCACGCTTTAACATACAACG 59.324 43.478 0.00 0.00 0.00 4.10
477 483 0.613260 ATACAACGCAGCCCTTCAGA 59.387 50.000 0.00 0.00 0.00 3.27
514 520 5.726980 AGCTAAGAAGATATGAGGCTCTG 57.273 43.478 16.72 0.00 0.00 3.35
519 526 0.470833 AGATATGAGGCTCTGGCGGT 60.471 55.000 16.72 0.00 39.81 5.68
535 542 3.203716 GGCGGTATAAACTCCTTTGAGG 58.796 50.000 0.00 0.00 43.29 3.86
536 543 3.370209 GGCGGTATAAACTCCTTTGAGGT 60.370 47.826 0.00 0.00 41.50 3.85
537 544 4.141869 GGCGGTATAAACTCCTTTGAGGTA 60.142 45.833 0.00 0.00 37.64 3.08
556 563 4.042934 AGGTACCACCATTAAAGAGCACTT 59.957 41.667 15.94 0.00 41.95 3.16
557 564 5.249852 AGGTACCACCATTAAAGAGCACTTA 59.750 40.000 15.94 0.00 41.95 2.24
558 565 5.585047 GGTACCACCATTAAAGAGCACTTAG 59.415 44.000 7.15 0.00 38.42 2.18
665 674 3.242867 TCCATTCTACTCTGGCATAGGG 58.757 50.000 4.82 0.00 32.30 3.53
691 713 7.615582 TTCTAACTGCACAATGAGAATTAGG 57.384 36.000 0.00 0.00 0.00 2.69
743 765 8.817100 GCAGACATTTATATGCGCATACTTATA 58.183 33.333 31.17 18.16 35.03 0.98
811 860 7.811117 AAGGCTACACAGTACAATTTGTAAA 57.189 32.000 10.73 0.00 34.21 2.01
859 920 3.066814 CAAGCAGAGCCCAAGCCC 61.067 66.667 0.00 0.00 41.25 5.19
882 943 2.520741 CACCACCGCAAAACCCCT 60.521 61.111 0.00 0.00 0.00 4.79
884 945 1.830847 ACCACCGCAAAACCCCTTC 60.831 57.895 0.00 0.00 0.00 3.46
885 946 1.530655 CCACCGCAAAACCCCTTCT 60.531 57.895 0.00 0.00 0.00 2.85
886 947 1.524008 CCACCGCAAAACCCCTTCTC 61.524 60.000 0.00 0.00 0.00 2.87
887 948 0.821711 CACCGCAAAACCCCTTCTCA 60.822 55.000 0.00 0.00 0.00 3.27
890 951 0.537371 CGCAAAACCCCTTCTCACCT 60.537 55.000 0.00 0.00 0.00 4.00
891 952 1.248486 GCAAAACCCCTTCTCACCTC 58.752 55.000 0.00 0.00 0.00 3.85
892 953 1.911057 CAAAACCCCTTCTCACCTCC 58.089 55.000 0.00 0.00 0.00 4.30
893 954 1.144913 CAAAACCCCTTCTCACCTCCA 59.855 52.381 0.00 0.00 0.00 3.86
894 955 0.771755 AAACCCCTTCTCACCTCCAC 59.228 55.000 0.00 0.00 0.00 4.02
895 956 0.401395 AACCCCTTCTCACCTCCACA 60.401 55.000 0.00 0.00 0.00 4.17
919 982 1.743623 ACACACACACACACACGGG 60.744 57.895 0.00 0.00 0.00 5.28
1450 1688 0.401105 CCATCTCCAGGTGATCCCCT 60.401 60.000 0.59 0.00 34.21 4.79
1466 1705 1.316266 CCTCTCCCATCCACCTCCT 59.684 63.158 0.00 0.00 0.00 3.69
1469 1708 0.644380 TCTCCCATCCACCTCCTCAT 59.356 55.000 0.00 0.00 0.00 2.90
1522 1773 1.781555 CGCAGTGTTTCTACCAGCG 59.218 57.895 0.00 0.00 38.55 5.18
1529 1780 1.019805 GTTTCTACCAGCGCCACTCC 61.020 60.000 2.29 0.00 0.00 3.85
1633 1934 4.655649 TGTATCTGAACCTGATGTATGCCT 59.344 41.667 0.00 0.00 0.00 4.75
1656 2029 4.960938 TGTATCTGAACCTGATGTATGCC 58.039 43.478 0.00 0.00 0.00 4.40
1674 2047 5.653255 ATGCCCTGTATCTGAATTTAGGT 57.347 39.130 0.00 0.00 0.00 3.08
1697 2070 3.099905 TCAGGAGTCTGTAACTGGATGG 58.900 50.000 0.00 0.00 38.74 3.51
1771 2313 7.973048 TTTGATGATTGGAGTAGTAGGTACT 57.027 36.000 0.00 0.00 45.34 2.73
1796 2338 2.100916 GCGATGACAGGGCTTAGAAGTA 59.899 50.000 0.00 0.00 0.00 2.24
1800 2354 5.675538 GATGACAGGGCTTAGAAGTATTGT 58.324 41.667 0.00 0.00 0.00 2.71
1801 2355 5.086104 TGACAGGGCTTAGAAGTATTGTC 57.914 43.478 11.72 11.72 34.82 3.18
1889 2477 7.460751 AATCGAATATATGCATCACATCTCG 57.539 36.000 0.19 6.00 40.38 4.04
1906 2494 1.945394 CTCGCAATAGCCTGCAAAGAT 59.055 47.619 4.18 0.00 42.77 2.40
1920 2508 3.513515 TGCAAAGATTTGGGGGTTATGTC 59.486 43.478 7.38 0.00 38.57 3.06
1934 2522 4.320494 GGGTTATGTCAGTGCTTCTGTTTG 60.320 45.833 8.75 0.00 43.97 2.93
1948 2541 3.468770 TCTGTTTGCTGCATTGCATTTT 58.531 36.364 12.53 0.00 42.96 1.82
1998 2591 2.166907 AGTAGCAGGACAGCATACCT 57.833 50.000 0.00 0.00 36.85 3.08
2035 3200 2.486982 TGTGACTGCTTAGGTCTCGTAC 59.513 50.000 0.00 0.00 35.04 3.67
2107 3272 3.980646 TGTAATGTTGTGGCAGTTGAC 57.019 42.857 0.00 0.00 0.00 3.18
2109 3274 2.071778 AATGTTGTGGCAGTTGACCT 57.928 45.000 0.00 0.00 0.00 3.85
2111 3276 1.846007 TGTTGTGGCAGTTGACCTTT 58.154 45.000 0.00 0.00 0.00 3.11
2322 3944 7.487829 CCGATTGGTTTAACACAATTTATCTGG 59.512 37.037 11.16 5.81 37.43 3.86
2350 3972 7.455058 TCTTTGTGGAGCCATAACTAGTTTTA 58.545 34.615 14.49 0.00 0.00 1.52
2410 4032 1.202818 GGATCACTCCCACAATAGCCC 60.203 57.143 0.00 0.00 35.28 5.19
2411 4033 1.490490 GATCACTCCCACAATAGCCCA 59.510 52.381 0.00 0.00 0.00 5.36
2440 4063 4.272504 ACTTCGGTGTCATGTTACTGTTTG 59.727 41.667 9.60 5.56 0.00 2.93
2500 4124 0.896923 GCATCACCAAATTGGCAGGA 59.103 50.000 12.67 7.96 42.67 3.86
2534 4174 3.691609 GGTTTCCAGATTGGTCATGACTC 59.308 47.826 24.50 14.68 39.03 3.36
2535 4175 4.566488 GGTTTCCAGATTGGTCATGACTCT 60.566 45.833 24.50 16.65 39.03 3.24
2556 4196 6.824704 ACTCTGTAGGTCTTCTATGTAGTGTC 59.175 42.308 0.00 0.00 0.00 3.67
2561 4201 3.099362 GTCTTCTATGTAGTGTCGTGCG 58.901 50.000 0.00 0.00 0.00 5.34
2562 4202 2.096980 TCTTCTATGTAGTGTCGTGCGG 59.903 50.000 0.00 0.00 0.00 5.69
2563 4203 0.099968 TCTATGTAGTGTCGTGCGGC 59.900 55.000 0.00 0.00 0.00 6.53
2564 4204 0.100682 CTATGTAGTGTCGTGCGGCT 59.899 55.000 0.00 0.00 0.00 5.52
2565 4205 0.099968 TATGTAGTGTCGTGCGGCTC 59.900 55.000 0.00 0.00 0.00 4.70
2566 4206 2.867333 ATGTAGTGTCGTGCGGCTCG 62.867 60.000 17.44 17.44 0.00 5.03
2567 4207 3.359523 TAGTGTCGTGCGGCTCGT 61.360 61.111 21.73 7.33 0.00 4.18
2568 4208 3.604494 TAGTGTCGTGCGGCTCGTG 62.604 63.158 21.73 0.15 0.00 4.35
2591 4231 8.916654 CGTGCCAGTAGATCATAAACTTATAAG 58.083 37.037 11.05 11.05 0.00 1.73
2669 4350 5.567037 TGATCATTCCGGTATGAAGGATT 57.433 39.130 25.16 10.44 43.54 3.01
2742 4423 7.402054 TCAATATTTTGAGCCTTTCCTGTCTA 58.598 34.615 0.00 0.00 36.94 2.59
2954 4667 7.814264 AGGAATACAAATTTCTGCTATCCTG 57.186 36.000 6.16 0.00 29.07 3.86
2975 4688 6.265196 TCCTGTTTACTCATTGCTTCAACATT 59.735 34.615 0.00 0.00 0.00 2.71
2984 4697 8.239314 ACTCATTGCTTCAACATTAACACATAG 58.761 33.333 0.00 0.00 0.00 2.23
3089 4803 4.730657 CAGGCAGAATGTTCTTAAAGCTG 58.269 43.478 0.00 0.00 39.31 4.24
3290 5064 3.665323 GCTGCACACGTACAGAATTTCAG 60.665 47.826 14.57 0.00 35.90 3.02
3312 5086 1.303155 TGTGCCGAATGTGCATCCA 60.303 52.632 0.00 0.00 41.46 3.41
3337 5113 2.229784 CCACATTTTCTGAAGTCTGGCC 59.770 50.000 0.00 0.00 0.00 5.36
3359 5135 7.726738 TGGCCTATATACACTCTACATGTTACA 59.273 37.037 2.30 0.00 0.00 2.41
3404 5184 6.765989 GTGGCAGGAGTATATGTTGAACATAA 59.234 38.462 20.49 8.64 43.50 1.90
3499 5285 9.157104 TGCGTATAAATGAGTTTGTTATCTTGA 57.843 29.630 0.00 0.00 0.00 3.02
3505 5291 8.641498 AAATGAGTTTGTTATCTTGACCTGAT 57.359 30.769 0.00 0.00 0.00 2.90
3535 5321 9.066892 TGTAGGAGAATTATATTGCCAAACATC 57.933 33.333 0.00 0.00 0.00 3.06
3536 5322 7.530426 AGGAGAATTATATTGCCAAACATCC 57.470 36.000 0.00 0.00 0.00 3.51
3537 5323 7.068702 AGGAGAATTATATTGCCAAACATCCA 58.931 34.615 0.00 0.00 0.00 3.41
3538 5324 7.564660 AGGAGAATTATATTGCCAAACATCCAA 59.435 33.333 0.00 0.00 0.00 3.53
3539 5325 8.203485 GGAGAATTATATTGCCAAACATCCAAA 58.797 33.333 0.00 0.00 0.00 3.28
3540 5326 9.252962 GAGAATTATATTGCCAAACATCCAAAG 57.747 33.333 0.00 0.00 0.00 2.77
3544 5334 9.956640 ATTATATTGCCAAACATCCAAAGAAAA 57.043 25.926 0.00 0.00 0.00 2.29
3563 5353 7.039313 AGAAAACATGTCCTTGTTAACCTTC 57.961 36.000 0.00 1.31 38.85 3.46
3616 5408 6.743575 AAAAGTTGTGCTACTGGCTATTAG 57.256 37.500 0.00 0.00 42.39 1.73
3620 5412 6.051717 AGTTGTGCTACTGGCTATTAGAATG 58.948 40.000 0.00 0.00 42.39 2.67
3626 5418 5.178438 GCTACTGGCTATTAGAATGCACTTC 59.822 44.000 0.00 0.00 38.06 3.01
3723 5534 3.482436 AGTTTCCTGCCACGTAATGAAA 58.518 40.909 0.00 0.00 0.00 2.69
3737 5548 5.989168 ACGTAATGAAACATCTCTGTTGTCA 59.011 36.000 0.00 0.25 44.83 3.58
3749 5560 2.897969 TCTGTTGTCAACTACTCCCTCC 59.102 50.000 16.45 0.00 0.00 4.30
3752 5563 2.005370 TGTCAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3753 5564 1.616865 TGTCAACTACTCCCTCCGTTG 59.383 52.381 0.00 0.00 38.39 4.10
3754 5565 0.606604 TCAACTACTCCCTCCGTTGC 59.393 55.000 0.00 0.00 37.31 4.17
3755 5566 0.320374 CAACTACTCCCTCCGTTGCA 59.680 55.000 0.00 0.00 31.62 4.08
3756 5567 1.053424 AACTACTCCCTCCGTTGCAA 58.947 50.000 0.00 0.00 0.00 4.08
3757 5568 1.053424 ACTACTCCCTCCGTTGCAAA 58.947 50.000 0.00 0.00 0.00 3.68
3758 5569 1.628846 ACTACTCCCTCCGTTGCAAAT 59.371 47.619 0.00 0.00 0.00 2.32
3759 5570 2.039879 ACTACTCCCTCCGTTGCAAATT 59.960 45.455 0.00 0.00 0.00 1.82
3760 5571 2.871096 ACTCCCTCCGTTGCAAATTA 57.129 45.000 0.00 0.00 0.00 1.40
3761 5572 2.433436 ACTCCCTCCGTTGCAAATTAC 58.567 47.619 0.00 0.00 0.00 1.89
3762 5573 2.039879 ACTCCCTCCGTTGCAAATTACT 59.960 45.455 0.00 0.00 0.00 2.24
3763 5574 2.678336 CTCCCTCCGTTGCAAATTACTC 59.322 50.000 0.00 0.00 0.00 2.59
3764 5575 1.396996 CCCTCCGTTGCAAATTACTCG 59.603 52.381 0.00 0.00 0.00 4.18
3765 5576 2.073816 CCTCCGTTGCAAATTACTCGT 58.926 47.619 0.00 0.00 0.00 4.18
3766 5577 2.093783 CCTCCGTTGCAAATTACTCGTC 59.906 50.000 0.00 0.00 0.00 4.20
3767 5578 1.722464 TCCGTTGCAAATTACTCGTCG 59.278 47.619 0.00 0.00 0.00 5.12
3768 5579 1.510007 CGTTGCAAATTACTCGTCGC 58.490 50.000 0.00 0.00 0.00 5.19
3769 5580 1.136474 CGTTGCAAATTACTCGTCGCA 60.136 47.619 0.00 0.00 0.00 5.10
3770 5581 2.495939 GTTGCAAATTACTCGTCGCAG 58.504 47.619 0.00 0.00 0.00 5.18
3771 5582 2.073117 TGCAAATTACTCGTCGCAGA 57.927 45.000 0.00 0.00 0.00 4.26
3772 5583 2.409012 TGCAAATTACTCGTCGCAGAA 58.591 42.857 0.00 0.00 39.69 3.02
3773 5584 2.803386 TGCAAATTACTCGTCGCAGAAA 59.197 40.909 0.00 0.00 39.69 2.52
3774 5585 3.435327 TGCAAATTACTCGTCGCAGAAAT 59.565 39.130 0.00 0.00 39.69 2.17
3775 5586 3.780801 GCAAATTACTCGTCGCAGAAATG 59.219 43.478 0.00 0.00 39.69 2.32
3776 5587 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
3777 5588 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
3778 5589 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
3779 5590 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
3780 5591 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
3781 5592 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
3782 5593 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
3783 5594 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
3784 5595 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
3785 5596 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
3786 5597 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
3787 5598 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
3788 5599 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
3789 5600 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
3790 5601 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
3791 5602 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
3792 5603 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
3793 5604 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
3821 5632 8.286191 ACATCTAGATACATTCATATCTGCGA 57.714 34.615 4.54 3.39 41.17 5.10
3822 5633 8.187480 ACATCTAGATACATTCATATCTGCGAC 58.813 37.037 4.54 0.00 41.17 5.19
3823 5634 7.687941 TCTAGATACATTCATATCTGCGACA 57.312 36.000 5.70 0.00 41.17 4.35
3824 5635 8.110860 TCTAGATACATTCATATCTGCGACAA 57.889 34.615 5.70 0.00 41.17 3.18
3825 5636 8.239998 TCTAGATACATTCATATCTGCGACAAG 58.760 37.037 5.70 0.00 41.17 3.16
3826 5637 6.753180 AGATACATTCATATCTGCGACAAGT 58.247 36.000 0.00 0.00 39.87 3.16
3827 5638 7.886338 AGATACATTCATATCTGCGACAAGTA 58.114 34.615 0.00 0.00 39.87 2.24
3828 5639 8.360390 AGATACATTCATATCTGCGACAAGTAA 58.640 33.333 0.00 0.00 39.87 2.24
3829 5640 9.144747 GATACATTCATATCTGCGACAAGTAAT 57.855 33.333 0.00 0.00 0.00 1.89
3830 5641 7.792374 ACATTCATATCTGCGACAAGTAATT 57.208 32.000 0.00 0.00 0.00 1.40
3831 5642 7.855545 ACATTCATATCTGCGACAAGTAATTC 58.144 34.615 0.00 0.00 0.00 2.17
3832 5643 6.510746 TTCATATCTGCGACAAGTAATTCG 57.489 37.500 0.00 0.00 38.31 3.34
3833 5644 4.982295 TCATATCTGCGACAAGTAATTCGG 59.018 41.667 0.00 0.00 35.73 4.30
3834 5645 3.520290 ATCTGCGACAAGTAATTCGGA 57.480 42.857 0.00 0.00 35.73 4.55
3835 5646 3.306917 TCTGCGACAAGTAATTCGGAA 57.693 42.857 0.00 0.00 35.02 4.30
3836 5647 2.991190 TCTGCGACAAGTAATTCGGAAC 59.009 45.455 0.00 0.00 35.02 3.62
3857 5673 2.959707 CGGAGGGAGTACTTGCTTATCT 59.040 50.000 0.00 0.00 0.00 1.98
3862 5678 5.269991 AGGGAGTACTTGCTTATCTACACA 58.730 41.667 0.00 0.00 0.00 3.72
3982 5893 4.592942 TGCAGGAAGATCTTTGCTGTAAT 58.407 39.130 25.15 0.00 39.61 1.89
3990 5901 7.752686 GGAAGATCTTTGCTGTAATTTGTCTTC 59.247 37.037 9.87 0.00 37.93 2.87
4000 5911 9.332502 TGCTGTAATTTGTCTTCTAAACAGTTA 57.667 29.630 0.00 0.00 0.00 2.24
4019 5930 7.450074 ACAGTTATTGTGTGTGGAAGATTCTA 58.550 34.615 0.00 0.00 38.99 2.10
4183 6102 3.078837 TCATTACTTGAACCGCCTTTCC 58.921 45.455 0.00 0.00 0.00 3.13
4184 6103 2.642154 TTACTTGAACCGCCTTTCCA 57.358 45.000 0.00 0.00 0.00 3.53
4198 6117 4.585879 GCCTTTCCAGTCTTGTAACCATA 58.414 43.478 0.00 0.00 0.00 2.74
4199 6118 5.193679 GCCTTTCCAGTCTTGTAACCATAT 58.806 41.667 0.00 0.00 0.00 1.78
4200 6119 6.354130 GCCTTTCCAGTCTTGTAACCATATA 58.646 40.000 0.00 0.00 0.00 0.86
4201 6120 6.260271 GCCTTTCCAGTCTTGTAACCATATAC 59.740 42.308 0.00 0.00 0.00 1.47
4202 6121 7.565680 CCTTTCCAGTCTTGTAACCATATACT 58.434 38.462 0.00 0.00 0.00 2.12
4203 6122 7.711339 CCTTTCCAGTCTTGTAACCATATACTC 59.289 40.741 0.00 0.00 0.00 2.59
4204 6123 6.726490 TCCAGTCTTGTAACCATATACTCC 57.274 41.667 0.00 0.00 0.00 3.85
4205 6124 5.601313 TCCAGTCTTGTAACCATATACTCCC 59.399 44.000 0.00 0.00 0.00 4.30
4206 6125 5.602978 CCAGTCTTGTAACCATATACTCCCT 59.397 44.000 0.00 0.00 0.00 4.20
4207 6126 6.239345 CCAGTCTTGTAACCATATACTCCCTC 60.239 46.154 0.00 0.00 0.00 4.30
4208 6127 6.551601 CAGTCTTGTAACCATATACTCCCTCT 59.448 42.308 0.00 0.00 0.00 3.69
4209 6128 6.551601 AGTCTTGTAACCATATACTCCCTCTG 59.448 42.308 0.00 0.00 0.00 3.35
4210 6129 6.324254 GTCTTGTAACCATATACTCCCTCTGT 59.676 42.308 0.00 0.00 0.00 3.41
4211 6130 6.550108 TCTTGTAACCATATACTCCCTCTGTC 59.450 42.308 0.00 0.00 0.00 3.51
4212 6131 5.145564 TGTAACCATATACTCCCTCTGTCC 58.854 45.833 0.00 0.00 0.00 4.02
4213 6132 2.877866 ACCATATACTCCCTCTGTCCG 58.122 52.381 0.00 0.00 0.00 4.79
4214 6133 2.445905 ACCATATACTCCCTCTGTCCGA 59.554 50.000 0.00 0.00 0.00 4.55
4215 6134 3.117246 ACCATATACTCCCTCTGTCCGAA 60.117 47.826 0.00 0.00 0.00 4.30
4216 6135 3.895656 CCATATACTCCCTCTGTCCGAAA 59.104 47.826 0.00 0.00 0.00 3.46
4217 6136 4.344102 CCATATACTCCCTCTGTCCGAAAA 59.656 45.833 0.00 0.00 0.00 2.29
4218 6137 5.012148 CCATATACTCCCTCTGTCCGAAAAT 59.988 44.000 0.00 0.00 0.00 1.82
4219 6138 6.210784 CCATATACTCCCTCTGTCCGAAAATA 59.789 42.308 0.00 0.00 0.00 1.40
4220 6139 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4221 6140 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4222 6141 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4223 6142 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4224 6143 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4225 6144 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4226 6145 3.933332 CCTCTGTCCGAAAATACTTGTCC 59.067 47.826 0.00 0.00 0.00 4.02
4227 6146 4.322801 CCTCTGTCCGAAAATACTTGTCCT 60.323 45.833 0.00 0.00 0.00 3.85
4228 6147 5.105473 CCTCTGTCCGAAAATACTTGTCCTA 60.105 44.000 0.00 0.00 0.00 2.94
4229 6148 6.349243 TCTGTCCGAAAATACTTGTCCTAA 57.651 37.500 0.00 0.00 0.00 2.69
4230 6149 6.761312 TCTGTCCGAAAATACTTGTCCTAAA 58.239 36.000 0.00 0.00 0.00 1.85
4231 6150 7.218614 TCTGTCCGAAAATACTTGTCCTAAAA 58.781 34.615 0.00 0.00 0.00 1.52
4232 6151 7.716123 TCTGTCCGAAAATACTTGTCCTAAAAA 59.284 33.333 0.00 0.00 0.00 1.94
4233 6152 8.398878 TGTCCGAAAATACTTGTCCTAAAAAT 57.601 30.769 0.00 0.00 0.00 1.82
4234 6153 8.293867 TGTCCGAAAATACTTGTCCTAAAAATG 58.706 33.333 0.00 0.00 0.00 2.32
4235 6154 8.508875 GTCCGAAAATACTTGTCCTAAAAATGA 58.491 33.333 0.00 0.00 0.00 2.57
4236 6155 9.069082 TCCGAAAATACTTGTCCTAAAAATGAA 57.931 29.630 0.00 0.00 0.00 2.57
4237 6156 9.855021 CCGAAAATACTTGTCCTAAAAATGAAT 57.145 29.630 0.00 0.00 0.00 2.57
4300 6219 8.793592 ACAACCATTTCTAAGACAAGTATTTCC 58.206 33.333 0.00 0.00 0.00 3.13
4301 6220 7.611213 ACCATTTCTAAGACAAGTATTTCCG 57.389 36.000 0.00 0.00 0.00 4.30
4302 6221 6.598064 ACCATTTCTAAGACAAGTATTTCCGG 59.402 38.462 0.00 0.00 0.00 5.14
4303 6222 6.821665 CCATTTCTAAGACAAGTATTTCCGGA 59.178 38.462 0.00 0.00 0.00 5.14
4304 6223 7.201617 CCATTTCTAAGACAAGTATTTCCGGAC 60.202 40.741 1.83 0.00 0.00 4.79
4305 6224 4.990257 TCTAAGACAAGTATTTCCGGACG 58.010 43.478 1.83 0.00 0.00 4.79
4306 6225 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
4307 6226 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
4308 6227 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
4309 6228 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4310 6229 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4311 6230 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4312 6231 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4313 6232 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4314 6233 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4348 6271 4.122776 ACAGAGTTGGATGCGTATCATTC 58.877 43.478 15.61 6.73 35.05 2.67
4390 6323 3.942748 TGACAAGTAACCCTGTGTTTGTC 59.057 43.478 7.91 7.91 40.35 3.18
4536 6493 7.148239 GGATAGTACATGGTTTTGAAGAACAGG 60.148 40.741 0.00 0.00 0.00 4.00
4617 6585 2.933906 CACGGCTCATACATACGGTTTT 59.066 45.455 0.00 0.00 0.00 2.43
4642 6618 2.886081 CTCTGATGTCCGTCTTTCAGG 58.114 52.381 0.00 0.00 0.00 3.86
4644 6621 3.427573 TCTGATGTCCGTCTTTCAGGTA 58.572 45.455 0.00 0.00 0.00 3.08
4752 6928 1.228003 ATGCGGTTTCGGTGTTCCA 60.228 52.632 0.00 0.00 36.79 3.53
4764 6940 1.539388 GGTGTTCCAATGCACGATCAA 59.461 47.619 0.00 0.00 36.54 2.57
4823 7005 1.455383 CCGGGTTGCTTTCTTGCACT 61.455 55.000 0.00 0.00 43.20 4.40
4849 7031 1.732308 GCCATTGCTAAGCTCCTGC 59.268 57.895 0.00 0.00 35.19 4.85
4871 7053 3.334691 CCGACCTCTGCTTATGTTTTCA 58.665 45.455 0.00 0.00 0.00 2.69
4873 7055 4.142816 CCGACCTCTGCTTATGTTTTCAAG 60.143 45.833 0.00 0.00 0.00 3.02
4917 7108 1.252904 CCCATGCCTGGACCAACAAG 61.253 60.000 9.96 0.00 46.37 3.16
4921 7112 1.619654 TGCCTGGACCAACAAGATTG 58.380 50.000 0.00 0.00 0.00 2.67
4991 7190 9.970395 AATTGTATTATCTTGGCATGTATGTTG 57.030 29.630 0.00 0.00 0.00 3.33
5091 7324 2.781681 AACCGGAAGTGGTAATCTGG 57.218 50.000 9.46 0.00 42.89 3.86
5111 7366 3.191581 TGGATCTGAACTCTGAAGACGTC 59.808 47.826 7.70 7.70 0.00 4.34
5166 7421 0.890683 GCCTTTCACCTTGACCATGG 59.109 55.000 11.19 11.19 0.00 3.66
5407 7665 4.988598 ACGGACGCACTTGGCCTG 62.989 66.667 3.32 0.00 40.31 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.295909 TGCTTAGGTTGTGCCAACATTC 59.704 45.455 16.55 6.46 40.61 2.67
144 145 0.248289 GCTGATGTTGGCAGGCAAAT 59.752 50.000 11.69 7.46 34.00 2.32
222 223 8.909708 TGCTATGAAAATAACTTACATGCAAC 57.090 30.769 0.00 0.00 0.00 4.17
243 244 4.644163 TTTACTTTGGTAAGGGCTGCTA 57.356 40.909 0.00 0.00 38.86 3.49
358 359 7.246674 TGCGGATGATACTCTGTTATTTTTC 57.753 36.000 0.00 0.00 0.00 2.29
379 384 4.035278 TGTTAACCACCTTCTTTTTGCG 57.965 40.909 2.48 0.00 0.00 4.85
381 386 7.700656 CACTTACTGTTAACCACCTTCTTTTTG 59.299 37.037 2.48 0.00 0.00 2.44
387 392 3.501062 GGCACTTACTGTTAACCACCTTC 59.499 47.826 2.48 0.00 0.00 3.46
426 432 1.063717 AGGAAATGGCATCGATGGGTT 60.064 47.619 26.00 0.00 0.00 4.11
441 447 5.333492 CGTTGTATGTTAAAGCGTGAGGAAA 60.333 40.000 0.00 0.00 0.00 3.13
465 471 2.044650 TGGCATCTGAAGGGCTGC 60.045 61.111 7.55 0.00 32.17 5.25
514 520 3.203716 CCTCAAAGGAGTTTATACCGCC 58.796 50.000 0.00 0.00 37.67 6.13
519 526 5.786457 TGGTGGTACCTCAAAGGAGTTTATA 59.214 40.000 14.36 0.00 39.58 0.98
535 542 6.171213 ACTAAGTGCTCTTTAATGGTGGTAC 58.829 40.000 6.31 0.00 35.36 3.34
536 543 6.368779 ACTAAGTGCTCTTTAATGGTGGTA 57.631 37.500 6.31 0.00 35.36 3.25
537 544 5.242795 ACTAAGTGCTCTTTAATGGTGGT 57.757 39.130 6.31 0.00 35.36 4.16
665 674 7.965107 CCTAATTCTCATTGTGCAGTTAGAAAC 59.035 37.037 0.00 0.00 0.00 2.78
691 713 9.604626 CACTTTATTAAGCATAGAATAGCAAGC 57.395 33.333 0.00 0.00 34.60 4.01
748 770 8.993121 CAAACTCTGCTTATTACGGATGATAAT 58.007 33.333 0.00 0.00 0.00 1.28
749 771 7.985184 ACAAACTCTGCTTATTACGGATGATAA 59.015 33.333 0.00 0.00 0.00 1.75
753 775 7.715265 ATACAAACTCTGCTTATTACGGATG 57.285 36.000 0.00 0.00 0.00 3.51
859 920 1.228124 TTTTGCGGTGGTGGGAGAG 60.228 57.895 0.00 0.00 0.00 3.20
882 943 1.134521 GTGTGTGTGTGGAGGTGAGAA 60.135 52.381 0.00 0.00 0.00 2.87
884 945 0.177836 TGTGTGTGTGTGGAGGTGAG 59.822 55.000 0.00 0.00 0.00 3.51
885 946 0.107897 GTGTGTGTGTGTGGAGGTGA 60.108 55.000 0.00 0.00 0.00 4.02
886 947 0.392327 TGTGTGTGTGTGTGGAGGTG 60.392 55.000 0.00 0.00 0.00 4.00
887 948 0.392461 GTGTGTGTGTGTGTGGAGGT 60.392 55.000 0.00 0.00 0.00 3.85
890 951 0.035458 TGTGTGTGTGTGTGTGTGGA 59.965 50.000 0.00 0.00 0.00 4.02
891 952 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
892 953 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
893 954 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
894 955 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
895 956 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1101 1179 4.361971 AGCTCGGGGTCGGAGTCA 62.362 66.667 0.00 0.00 36.95 3.41
1450 1688 0.644380 ATGAGGAGGTGGATGGGAGA 59.356 55.000 0.00 0.00 0.00 3.71
1466 1705 0.901114 TCGACCGGGGAGAAACATGA 60.901 55.000 6.32 0.00 0.00 3.07
1469 1708 0.688487 AAATCGACCGGGGAGAAACA 59.312 50.000 6.32 0.00 0.00 2.83
1529 1780 2.360165 GCAGGCAACAAATCTCCCATAG 59.640 50.000 0.00 0.00 41.41 2.23
1633 1934 5.368145 GGCATACATCAGGTTCAGATACAA 58.632 41.667 0.00 0.00 0.00 2.41
1674 2047 4.020218 CCATCCAGTTACAGACTCCTGAAA 60.020 45.833 0.00 0.00 43.02 2.69
1697 2070 3.830755 TGACACTGGTAACTCCTAGTTCC 59.169 47.826 0.00 0.00 39.51 3.62
1771 2313 2.698274 TCTAAGCCCTGTCATCGCATTA 59.302 45.455 0.00 0.00 0.00 1.90
1865 2419 6.019237 GCGAGATGTGATGCATATATTCGATT 60.019 38.462 16.78 0.00 38.06 3.34
1889 2477 3.192466 CCAAATCTTTGCAGGCTATTGC 58.808 45.455 0.00 0.00 44.33 3.56
1906 2494 1.427368 AGCACTGACATAACCCCCAAA 59.573 47.619 0.00 0.00 0.00 3.28
1934 2522 4.034626 TGCAATATCAAAATGCAATGCAGC 59.965 37.500 14.98 7.90 46.23 5.25
1998 2591 3.823873 AGTCACAAACACCTGACAACAAA 59.176 39.130 0.00 0.00 39.49 2.83
2035 3200 2.203800 TCTACTGGCGCAAGATTACG 57.796 50.000 21.26 1.54 43.02 3.18
2107 3272 6.431234 AGAAGCACTGGTAAATGAGTTAAAGG 59.569 38.462 0.00 0.00 0.00 3.11
2109 3274 7.119262 GCTAGAAGCACTGGTAAATGAGTTAAA 59.881 37.037 0.00 0.00 41.89 1.52
2111 3276 6.106673 GCTAGAAGCACTGGTAAATGAGTTA 58.893 40.000 0.00 0.00 41.89 2.24
2165 3721 5.888724 TCTCATCCAGTTACAGACTTCTAGG 59.111 44.000 0.00 0.00 36.10 3.02
2322 3944 3.084786 AGTTATGGCTCCACAAAGAAGC 58.915 45.455 0.00 0.00 0.00 3.86
2366 3988 5.951747 CAGGAGAAAAATGGGAAGGTGAATA 59.048 40.000 0.00 0.00 0.00 1.75
2369 3991 3.500289 CCAGGAGAAAAATGGGAAGGTGA 60.500 47.826 0.00 0.00 0.00 4.02
2410 4032 2.872245 ACATGACACCGAAGTCTTTGTG 59.128 45.455 0.00 12.28 39.27 3.33
2411 4033 3.194005 ACATGACACCGAAGTCTTTGT 57.806 42.857 0.00 8.73 39.27 2.83
2500 4124 2.308570 TCTGGAAACCATGGTATGCTGT 59.691 45.455 20.12 0.00 30.82 4.40
2534 4174 5.585445 ACGACACTACATAGAAGACCTACAG 59.415 44.000 0.00 0.00 0.00 2.74
2535 4175 5.353400 CACGACACTACATAGAAGACCTACA 59.647 44.000 0.00 0.00 0.00 2.74
2562 4202 3.371102 TTATGATCTACTGGCACGAGC 57.629 47.619 0.00 0.00 41.10 5.03
2563 4203 4.938080 AGTTTATGATCTACTGGCACGAG 58.062 43.478 0.00 0.00 0.00 4.18
2564 4204 5.339008 AAGTTTATGATCTACTGGCACGA 57.661 39.130 0.00 0.00 0.00 4.35
2565 4205 8.812147 TTATAAGTTTATGATCTACTGGCACG 57.188 34.615 0.00 0.00 0.00 5.34
2566 4206 9.982651 TCTTATAAGTTTATGATCTACTGGCAC 57.017 33.333 12.19 0.00 0.00 5.01
2591 4231 8.624776 AGCATTATAAAGTGCCTAAAATGTCTC 58.375 33.333 7.31 0.00 42.20 3.36
2690 4371 5.353400 CACTGAATATGCACACTGAGATGTT 59.647 40.000 0.00 0.00 0.00 2.71
2742 4423 5.061721 AGACATAACTTGGGACCTTTGTT 57.938 39.130 0.00 0.00 0.00 2.83
2954 4667 8.690840 GTGTTAATGTTGAAGCAATGAGTAAAC 58.309 33.333 0.00 0.00 0.00 2.01
3089 4803 2.742589 CCTCTTTGGAAGCCTTCGTTAC 59.257 50.000 0.00 0.00 38.35 2.50
3290 5064 1.308069 ATGCACATTCGGCACACCTC 61.308 55.000 0.00 0.00 45.23 3.85
3312 5086 5.308825 CCAGACTTCAGAAAATGTGGTAGT 58.691 41.667 3.16 0.00 0.00 2.73
3359 5135 9.494271 CTGCCACATGTAGAGTATGTATTTATT 57.506 33.333 0.00 0.00 36.67 1.40
3378 5158 4.019771 TGTTCAACATATACTCCTGCCACA 60.020 41.667 0.00 0.00 0.00 4.17
3404 5184 4.019860 TCAAAAGCTAGGACAAGAGCAGAT 60.020 41.667 0.00 0.00 41.36 2.90
3535 5321 6.478673 GGTTAACAAGGACATGTTTTCTTTGG 59.521 38.462 8.10 0.00 40.52 3.28
3536 5322 7.264947 AGGTTAACAAGGACATGTTTTCTTTG 58.735 34.615 8.10 3.03 40.52 2.77
3537 5323 7.418337 AGGTTAACAAGGACATGTTTTCTTT 57.582 32.000 8.10 0.00 40.52 2.52
3538 5324 7.123547 TGAAGGTTAACAAGGACATGTTTTCTT 59.876 33.333 8.10 2.01 40.52 2.52
3539 5325 6.605594 TGAAGGTTAACAAGGACATGTTTTCT 59.394 34.615 8.10 0.00 40.52 2.52
3540 5326 6.801575 TGAAGGTTAACAAGGACATGTTTTC 58.198 36.000 8.10 0.00 40.52 2.29
3544 5334 5.221244 GCTTTGAAGGTTAACAAGGACATGT 60.221 40.000 8.10 0.00 34.24 3.21
3563 5353 1.003545 CACACAGTTCGACCAGCTTTG 60.004 52.381 0.00 0.00 0.00 2.77
3723 5534 4.021016 GGGAGTAGTTGACAACAGAGATGT 60.021 45.833 20.08 0.42 0.00 3.06
3737 5548 1.053424 TTGCAACGGAGGGAGTAGTT 58.947 50.000 0.00 0.00 0.00 2.24
3749 5560 1.136474 TGCGACGAGTAATTTGCAACG 60.136 47.619 0.00 0.11 0.00 4.10
3752 5563 2.073117 TCTGCGACGAGTAATTTGCA 57.927 45.000 0.00 0.00 0.00 4.08
3753 5564 3.449322 TTTCTGCGACGAGTAATTTGC 57.551 42.857 0.00 0.00 0.00 3.68
3754 5565 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
3755 5566 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
3756 5567 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
3757 5568 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
3758 5569 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
3759 5570 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
3760 5571 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
3761 5572 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
3762 5573 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
3763 5574 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
3764 5575 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3765 5576 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
3766 5577 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
3767 5578 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
3795 5606 9.396022 TCGCAGATATGAATGTATCTAGATGTA 57.604 33.333 15.79 4.44 38.93 2.29
3796 5607 8.187480 GTCGCAGATATGAATGTATCTAGATGT 58.813 37.037 15.79 0.00 38.93 3.06
3797 5608 8.186821 TGTCGCAGATATGAATGTATCTAGATG 58.813 37.037 15.79 0.00 38.93 2.90
3798 5609 8.286191 TGTCGCAGATATGAATGTATCTAGAT 57.714 34.615 10.73 10.73 38.93 1.98
3799 5610 7.687941 TGTCGCAGATATGAATGTATCTAGA 57.312 36.000 0.00 0.00 38.93 2.43
3800 5611 8.026026 ACTTGTCGCAGATATGAATGTATCTAG 58.974 37.037 0.00 0.00 38.93 2.43
3801 5612 7.886338 ACTTGTCGCAGATATGAATGTATCTA 58.114 34.615 0.00 0.00 38.93 1.98
3802 5613 6.753180 ACTTGTCGCAGATATGAATGTATCT 58.247 36.000 0.00 0.00 41.03 1.98
3803 5614 8.520835 TTACTTGTCGCAGATATGAATGTATC 57.479 34.615 0.00 0.00 40.67 2.24
3804 5615 9.494271 AATTACTTGTCGCAGATATGAATGTAT 57.506 29.630 0.00 0.00 40.67 2.29
3805 5616 8.887036 AATTACTTGTCGCAGATATGAATGTA 57.113 30.769 0.00 0.00 40.67 2.29
3806 5617 7.306807 CGAATTACTTGTCGCAGATATGAATGT 60.307 37.037 0.00 0.00 40.67 2.71
3807 5618 7.005958 CGAATTACTTGTCGCAGATATGAATG 58.994 38.462 0.00 0.00 40.67 2.67
3808 5619 6.146184 CCGAATTACTTGTCGCAGATATGAAT 59.854 38.462 0.00 0.00 40.67 2.57
3809 5620 5.462068 CCGAATTACTTGTCGCAGATATGAA 59.538 40.000 0.00 0.00 40.67 2.57
3810 5621 4.982295 CCGAATTACTTGTCGCAGATATGA 59.018 41.667 0.00 0.00 40.67 2.15
3811 5622 4.982295 TCCGAATTACTTGTCGCAGATATG 59.018 41.667 0.00 0.00 40.67 1.78
3812 5623 5.196341 TCCGAATTACTTGTCGCAGATAT 57.804 39.130 0.00 0.00 40.67 1.63
3813 5624 4.642445 TCCGAATTACTTGTCGCAGATA 57.358 40.909 0.00 0.00 40.67 1.98
3814 5625 3.520290 TCCGAATTACTTGTCGCAGAT 57.480 42.857 0.00 0.00 40.67 2.90
3815 5626 2.991190 GTTCCGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 35.93 4.26
3816 5627 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
3817 5628 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3818 5629 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3819 5630 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3820 5631 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3821 5632 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3822 5633 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3823 5634 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3824 5635 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3825 5636 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3826 5637 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3827 5638 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
3828 5639 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
3829 5640 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3830 5641 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
3831 5642 0.172803 CAAGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
3832 5643 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
3833 5644 0.896226 AGCAAGTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
3834 5645 1.349067 AAGCAAGTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
3835 5646 2.226962 TAAGCAAGTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
3836 5647 2.959707 AGATAAGCAAGTACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
3837 5648 4.894114 TGTAGATAAGCAAGTACTCCCTCC 59.106 45.833 0.00 0.00 0.00 4.30
3838 5649 5.360144 TGTGTAGATAAGCAAGTACTCCCTC 59.640 44.000 0.00 0.00 0.00 4.30
3839 5650 5.269991 TGTGTAGATAAGCAAGTACTCCCT 58.730 41.667 0.00 0.00 0.00 4.20
3840 5651 5.593679 TGTGTAGATAAGCAAGTACTCCC 57.406 43.478 0.00 0.00 0.00 4.30
3841 5652 5.915758 CGATGTGTAGATAAGCAAGTACTCC 59.084 44.000 0.00 0.00 0.00 3.85
3842 5653 6.415280 CACGATGTGTAGATAAGCAAGTACTC 59.585 42.308 0.00 0.00 0.00 2.59
3843 5654 6.127703 ACACGATGTGTAGATAAGCAAGTACT 60.128 38.462 0.00 0.00 45.56 2.73
3844 5655 6.034591 ACACGATGTGTAGATAAGCAAGTAC 58.965 40.000 0.00 0.00 45.56 2.73
3845 5656 6.203808 ACACGATGTGTAGATAAGCAAGTA 57.796 37.500 0.00 0.00 45.56 2.24
3846 5657 5.073311 ACACGATGTGTAGATAAGCAAGT 57.927 39.130 0.00 0.00 45.56 3.16
3847 5658 5.807520 AGAACACGATGTGTAGATAAGCAAG 59.192 40.000 2.61 0.00 46.79 4.01
3848 5659 5.576774 CAGAACACGATGTGTAGATAAGCAA 59.423 40.000 2.61 0.00 46.79 3.91
3849 5660 5.102313 CAGAACACGATGTGTAGATAAGCA 58.898 41.667 2.61 0.00 46.79 3.91
3850 5661 4.026475 GCAGAACACGATGTGTAGATAAGC 60.026 45.833 2.61 0.00 46.79 3.09
3857 5673 3.193479 AGATCTGCAGAACACGATGTGTA 59.807 43.478 22.50 0.00 46.79 2.90
3862 5678 4.573900 AGAAAAGATCTGCAGAACACGAT 58.426 39.130 22.50 1.97 36.88 3.73
3943 5760 6.724893 TCCTGCATAAGTAGTGTAAGCATA 57.275 37.500 0.00 0.00 0.00 3.14
3962 5869 6.917533 ACAAATTACAGCAAAGATCTTCCTG 58.082 36.000 23.91 23.91 0.00 3.86
3982 5893 8.952278 ACACACAATAACTGTTTAGAAGACAAA 58.048 29.630 0.00 0.00 35.47 2.83
3990 5901 7.490962 TCTTCCACACACAATAACTGTTTAG 57.509 36.000 0.00 0.00 35.47 1.85
4000 5911 5.503927 AGCATAGAATCTTCCACACACAAT 58.496 37.500 0.00 0.00 0.00 2.71
4019 5930 7.425224 ACAGGTAGTATTTGAGTAAGAGCAT 57.575 36.000 0.00 0.00 0.00 3.79
4183 6102 6.551601 AGAGGGAGTATATGGTTACAAGACTG 59.448 42.308 0.00 0.00 0.00 3.51
4184 6103 6.551601 CAGAGGGAGTATATGGTTACAAGACT 59.448 42.308 0.00 0.00 0.00 3.24
4198 6117 5.209659 AGTATTTTCGGACAGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
4199 6118 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
4200 6119 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
4201 6120 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4202 6121 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4203 6122 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4204 6123 3.933332 GGACAAGTATTTTCGGACAGAGG 59.067 47.826 0.00 0.00 0.00 3.69
4205 6124 4.822026 AGGACAAGTATTTTCGGACAGAG 58.178 43.478 0.00 0.00 0.00 3.35
4206 6125 4.884668 AGGACAAGTATTTTCGGACAGA 57.115 40.909 0.00 0.00 0.00 3.41
4207 6126 7.429636 TTTTAGGACAAGTATTTTCGGACAG 57.570 36.000 0.00 0.00 0.00 3.51
4208 6127 7.804843 TTTTTAGGACAAGTATTTTCGGACA 57.195 32.000 0.00 0.00 0.00 4.02
4209 6128 8.508875 TCATTTTTAGGACAAGTATTTTCGGAC 58.491 33.333 0.00 0.00 0.00 4.79
4210 6129 8.624367 TCATTTTTAGGACAAGTATTTTCGGA 57.376 30.769 0.00 0.00 0.00 4.55
4211 6130 9.855021 ATTCATTTTTAGGACAAGTATTTTCGG 57.145 29.630 0.00 0.00 0.00 4.30
4274 6193 8.793592 GGAAATACTTGTCTTAGAAATGGTTGT 58.206 33.333 0.00 0.00 0.00 3.32
4275 6194 7.962918 CGGAAATACTTGTCTTAGAAATGGTTG 59.037 37.037 0.00 0.00 0.00 3.77
4276 6195 7.120726 CCGGAAATACTTGTCTTAGAAATGGTT 59.879 37.037 0.00 0.00 0.00 3.67
4277 6196 6.598064 CCGGAAATACTTGTCTTAGAAATGGT 59.402 38.462 0.00 0.00 0.00 3.55
4278 6197 6.821665 TCCGGAAATACTTGTCTTAGAAATGG 59.178 38.462 0.00 0.00 0.00 3.16
4279 6198 7.464178 CGTCCGGAAATACTTGTCTTAGAAATG 60.464 40.741 5.23 0.00 0.00 2.32
4280 6199 6.534079 CGTCCGGAAATACTTGTCTTAGAAAT 59.466 38.462 5.23 0.00 0.00 2.17
4281 6200 5.865552 CGTCCGGAAATACTTGTCTTAGAAA 59.134 40.000 5.23 0.00 0.00 2.52
4282 6201 5.404946 CGTCCGGAAATACTTGTCTTAGAA 58.595 41.667 5.23 0.00 0.00 2.10
4283 6202 4.142315 CCGTCCGGAAATACTTGTCTTAGA 60.142 45.833 5.23 0.00 37.50 2.10
4284 6203 4.110482 CCGTCCGGAAATACTTGTCTTAG 58.890 47.826 5.23 0.00 37.50 2.18
4285 6204 3.763360 TCCGTCCGGAAATACTTGTCTTA 59.237 43.478 5.23 0.00 42.05 2.10
4286 6205 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
4287 6206 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
4288 6207 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4289 6208 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4290 6209 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4291 6210 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4292 6211 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4293 6212 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4294 6213 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4295 6214 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4296 6215 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4297 6216 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4298 6217 0.846015 TATTACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4299 6218 1.920610 ATATTACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
4300 6219 2.609737 GCAATATTACTCCCTCCGTCCG 60.610 54.545 0.00 0.00 0.00 4.79
4301 6220 2.633481 AGCAATATTACTCCCTCCGTCC 59.367 50.000 0.00 0.00 0.00 4.79
4302 6221 4.338379 AAGCAATATTACTCCCTCCGTC 57.662 45.455 0.00 0.00 0.00 4.79
4303 6222 4.772886 AAAGCAATATTACTCCCTCCGT 57.227 40.909 0.00 0.00 0.00 4.69
4304 6223 6.053005 TGTTAAAGCAATATTACTCCCTCCG 58.947 40.000 0.00 0.00 0.00 4.63
4305 6224 7.280356 TCTGTTAAAGCAATATTACTCCCTCC 58.720 38.462 0.00 0.00 0.00 4.30
4306 6225 7.988028 ACTCTGTTAAAGCAATATTACTCCCTC 59.012 37.037 0.00 0.00 0.00 4.30
4307 6226 7.862675 ACTCTGTTAAAGCAATATTACTCCCT 58.137 34.615 0.00 0.00 0.00 4.20
4308 6227 8.398665 CAACTCTGTTAAAGCAATATTACTCCC 58.601 37.037 0.00 0.00 0.00 4.30
4309 6228 8.398665 CCAACTCTGTTAAAGCAATATTACTCC 58.601 37.037 0.00 0.00 0.00 3.85
4310 6229 9.162764 TCCAACTCTGTTAAAGCAATATTACTC 57.837 33.333 0.00 0.00 0.00 2.59
4311 6230 9.686683 ATCCAACTCTGTTAAAGCAATATTACT 57.313 29.630 0.00 0.00 0.00 2.24
4312 6231 9.722056 CATCCAACTCTGTTAAAGCAATATTAC 57.278 33.333 0.00 0.00 0.00 1.89
4313 6232 8.405531 GCATCCAACTCTGTTAAAGCAATATTA 58.594 33.333 0.00 0.00 0.00 0.98
4314 6233 7.260603 GCATCCAACTCTGTTAAAGCAATATT 58.739 34.615 0.00 0.00 0.00 1.28
4348 6271 4.332819 GTCAAAGAGAATTCCATGGTACCG 59.667 45.833 12.58 0.00 0.00 4.02
4390 6323 1.363744 GATTTGTCACCCTGCGAGAG 58.636 55.000 0.00 0.00 0.00 3.20
4536 6493 1.064463 TCTTTCCCCTGTGCATCATCC 60.064 52.381 0.00 0.00 0.00 3.51
4617 6585 0.900182 AGACGGACATCAGAGCACCA 60.900 55.000 0.00 0.00 0.00 4.17
4642 6618 5.791367 TCATATACCACTATCGCGTCTAC 57.209 43.478 5.77 0.00 0.00 2.59
4644 6621 5.648526 AGAATCATATACCACTATCGCGTCT 59.351 40.000 5.77 0.00 0.00 4.18
4649 6626 9.347934 GTTCTTCAGAATCATATACCACTATCG 57.652 37.037 0.00 0.00 36.33 2.92
4684 6662 1.660575 CCTATGGAACCTACGCGCG 60.661 63.158 30.96 30.96 0.00 6.86
4752 6928 5.705609 AAGTTAGGTTTTGATCGTGCATT 57.294 34.783 0.00 0.00 0.00 3.56
4764 6940 5.891551 TCAAAGAGCAGGAAAAGTTAGGTTT 59.108 36.000 0.00 0.00 0.00 3.27
4849 7031 2.403252 AAACATAAGCAGAGGTCGGG 57.597 50.000 0.00 0.00 0.00 5.14
4871 7053 4.578105 GGCTGCTAGAGAATTTACATGCTT 59.422 41.667 0.00 0.00 0.00 3.91
4873 7055 4.133078 AGGCTGCTAGAGAATTTACATGC 58.867 43.478 0.00 0.00 0.00 4.06
4955 7146 8.454106 GCCAAGATAATACAATTGCTCGATATT 58.546 33.333 5.05 4.59 0.00 1.28
4961 7152 6.742109 ACATGCCAAGATAATACAATTGCTC 58.258 36.000 5.05 0.00 0.00 4.26
4969 7164 8.153479 TGACAACATACATGCCAAGATAATAC 57.847 34.615 0.00 0.00 0.00 1.89
4973 7168 5.064579 CGTTGACAACATACATGCCAAGATA 59.935 40.000 18.09 0.00 0.00 1.98
5022 7255 4.072839 GAGTAGCCTAAAAACCTTGCAGT 58.927 43.478 0.00 0.00 0.00 4.40
5023 7256 3.440522 GGAGTAGCCTAAAAACCTTGCAG 59.559 47.826 0.00 0.00 0.00 4.41
5037 7270 1.133976 AGGATGCAATGTGGAGTAGCC 60.134 52.381 0.00 0.00 37.10 3.93
5091 7324 3.120130 ACGACGTCTTCAGAGTTCAGATC 60.120 47.826 14.70 0.00 0.00 2.75
5390 7648 4.988598 CAGGCCAAGTGCGTCCGT 62.989 66.667 5.01 0.00 42.61 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.