Multiple sequence alignment - TraesCS5D01G518000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G518000 chr5D 100.000 2187 0 0 1 2187 539787175 539784989 0.000000e+00 4039.0
1 TraesCS5D01G518000 chr5D 100.000 1058 0 0 2352 3409 539784824 539783767 0.000000e+00 1954.0
2 TraesCS5D01G518000 chr5D 85.415 1481 155 30 690 2162 539814691 539813264 0.000000e+00 1482.0
3 TraesCS5D01G518000 chr5D 86.387 191 24 2 3050 3239 539792983 539793172 1.240000e-49 207.0
4 TraesCS5D01G518000 chr5D 84.422 199 22 6 3050 3239 539823662 539823860 1.620000e-43 187.0
5 TraesCS5D01G518000 chr5D 85.714 98 12 2 3260 3356 291244453 291244357 6.020000e-18 102.0
6 TraesCS5D01G518000 chr5D 86.170 94 13 0 3260 3353 472740183 472740090 6.020000e-18 102.0
7 TraesCS5D01G518000 chr5B 96.284 1534 50 4 659 2187 681780180 681778649 0.000000e+00 2510.0
8 TraesCS5D01G518000 chr5B 93.530 1051 35 12 2352 3398 681778598 681777577 0.000000e+00 1533.0
9 TraesCS5D01G518000 chr5B 85.021 1442 147 32 725 2162 681817289 681815913 0.000000e+00 1402.0
10 TraesCS5D01G518000 chr5B 90.351 342 30 3 1 339 681780523 681780182 2.410000e-121 446.0
11 TraesCS5D01G518000 chr5B 87.500 192 22 2 3050 3239 681824760 681824951 1.590000e-53 220.0
12 TraesCS5D01G518000 chr5B 87.435 191 23 1 3050 3239 681789358 681789548 5.730000e-53 219.0
13 TraesCS5D01G518000 chr4A 94.814 1292 53 3 897 2187 628635507 628636785 0.000000e+00 2002.0
14 TraesCS5D01G518000 chr4A 86.353 1319 138 18 722 2030 628622505 628623791 0.000000e+00 1400.0
15 TraesCS5D01G518000 chr4A 90.909 440 21 7 2697 3136 628637153 628637573 1.060000e-159 573.0
16 TraesCS5D01G518000 chr4A 96.992 266 6 2 657 922 628635231 628635494 2.410000e-121 446.0
17 TraesCS5D01G518000 chr4A 85.427 199 20 6 3050 3239 628611451 628611253 7.460000e-47 198.0
18 TraesCS5D01G518000 chr4A 76.570 414 61 25 2850 3239 628630434 628630033 9.650000e-46 195.0
19 TraesCS5D01G518000 chr4A 92.424 132 9 1 3130 3261 628642737 628642867 1.620000e-43 187.0
20 TraesCS5D01G518000 chr4A 84.091 88 13 1 3107 3193 628624227 628624314 2.180000e-12 84.2
21 TraesCS5D01G518000 chr3D 94.910 334 10 1 333 659 7428772 7429105 1.810000e-142 516.0
22 TraesCS5D01G518000 chr2B 93.333 345 11 4 340 672 484925587 484925931 1.830000e-137 499.0
23 TraesCS5D01G518000 chr2B 86.170 94 13 0 3260 3353 125221596 125221503 6.020000e-18 102.0
24 TraesCS5D01G518000 chr2B 84.946 93 12 2 3263 3354 74002923 74002832 3.620000e-15 93.5
25 TraesCS5D01G518000 chr2A 93.656 331 17 3 330 659 26133513 26133840 3.060000e-135 492.0
26 TraesCS5D01G518000 chr2A 93.231 325 22 0 335 659 135294720 135294396 2.380000e-131 479.0
27 TraesCS5D01G518000 chr2A 91.471 340 22 2 327 659 391746884 391747223 8.620000e-126 460.0
28 TraesCS5D01G518000 chr1A 93.175 337 16 2 330 659 428295296 428295632 3.950000e-134 488.0
29 TraesCS5D01G518000 chr1A 84.848 99 13 2 3259 3356 566218079 566218176 7.790000e-17 99.0
30 TraesCS5D01G518000 chr3B 92.966 327 16 2 340 659 591553775 591554101 1.430000e-128 470.0
31 TraesCS5D01G518000 chr3B 92.401 329 20 2 336 659 551958036 551958364 6.660000e-127 464.0
32 TraesCS5D01G518000 chr4B 92.447 331 18 2 336 659 511028609 511028939 1.850000e-127 466.0
33 TraesCS5D01G518000 chrUn 87.708 301 35 2 5 303 63280943 63280643 1.950000e-92 350.0
34 TraesCS5D01G518000 chr7B 82.445 319 46 8 1 312 661432729 661432414 1.560000e-68 270.0
35 TraesCS5D01G518000 chr7B 82.508 303 45 6 1 296 713242292 713242593 3.370000e-65 259.0
36 TraesCS5D01G518000 chr7D 85.398 226 30 3 73 296 452442358 452442582 7.360000e-57 231.0
37 TraesCS5D01G518000 chr7D 87.234 94 12 0 3260 3353 479747784 479747877 1.290000e-19 108.0
38 TraesCS5D01G518000 chr7D 83.495 103 14 3 3259 3360 479747878 479747778 3.620000e-15 93.5
39 TraesCS5D01G518000 chr5A 87.500 88 11 0 3252 3339 450746506 450746419 6.020000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G518000 chr5D 539783767 539787175 3408 True 2996.500000 4039 100.000000 1 3409 2 chr5D.!!$R4 3408
1 TraesCS5D01G518000 chr5D 539813264 539814691 1427 True 1482.000000 1482 85.415000 690 2162 1 chr5D.!!$R3 1472
2 TraesCS5D01G518000 chr5B 681777577 681780523 2946 True 1496.333333 2510 93.388333 1 3398 3 chr5B.!!$R2 3397
3 TraesCS5D01G518000 chr5B 681815913 681817289 1376 True 1402.000000 1402 85.021000 725 2162 1 chr5B.!!$R1 1437
4 TraesCS5D01G518000 chr4A 628635231 628637573 2342 False 1007.000000 2002 94.238333 657 3136 3 chr4A.!!$F3 2479
5 TraesCS5D01G518000 chr4A 628622505 628624314 1809 False 742.100000 1400 85.222000 722 3193 2 chr4A.!!$F2 2471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 352 0.036294 GCCAGTGTTGTACTCCCTCC 60.036 60.0 0.0 0.0 37.6 4.30 F
1175 1223 0.975556 TTAGCTCCTCATCCACGGCA 60.976 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 1759 0.537188 GAAGCCATCGAAGGTCAGGA 59.463 55.0 8.72 0.0 0.00 3.86 R
2647 2902 0.387202 CGGTCCCTGCAGACATAGAG 59.613 60.0 17.39 0.0 38.59 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.530857 CACGCCAGATCCCGGACC 62.531 72.222 0.73 0.00 0.00 4.46
140 143 2.282958 TCCCCTTGCGAGAGACGT 60.283 61.111 1.22 0.00 44.60 4.34
301 305 2.579201 CGACGTGAGGGCTGGATT 59.421 61.111 0.00 0.00 0.00 3.01
333 337 2.805671 TGTCGTAATGTTGAACAGCCAG 59.194 45.455 3.74 0.00 0.00 4.85
345 349 0.396811 ACAGCCAGTGTTGTACTCCC 59.603 55.000 0.00 0.00 37.60 4.30
346 350 0.687354 CAGCCAGTGTTGTACTCCCT 59.313 55.000 0.00 0.00 37.60 4.20
347 351 0.977395 AGCCAGTGTTGTACTCCCTC 59.023 55.000 0.00 0.00 37.60 4.30
348 352 0.036294 GCCAGTGTTGTACTCCCTCC 60.036 60.000 0.00 0.00 37.60 4.30
349 353 1.645710 CCAGTGTTGTACTCCCTCCT 58.354 55.000 0.00 0.00 37.60 3.69
350 354 1.978580 CCAGTGTTGTACTCCCTCCTT 59.021 52.381 0.00 0.00 37.60 3.36
351 355 2.372172 CCAGTGTTGTACTCCCTCCTTT 59.628 50.000 0.00 0.00 37.60 3.11
352 356 3.557264 CCAGTGTTGTACTCCCTCCTTTC 60.557 52.174 0.00 0.00 37.60 2.62
353 357 2.638363 AGTGTTGTACTCCCTCCTTTCC 59.362 50.000 0.00 0.00 33.17 3.13
354 358 1.621814 TGTTGTACTCCCTCCTTTCCG 59.378 52.381 0.00 0.00 0.00 4.30
355 359 1.897802 GTTGTACTCCCTCCTTTCCGA 59.102 52.381 0.00 0.00 0.00 4.55
356 360 2.500504 GTTGTACTCCCTCCTTTCCGAT 59.499 50.000 0.00 0.00 0.00 4.18
357 361 2.829023 TGTACTCCCTCCTTTCCGATT 58.171 47.619 0.00 0.00 0.00 3.34
358 362 3.178865 TGTACTCCCTCCTTTCCGATTT 58.821 45.455 0.00 0.00 0.00 2.17
359 363 4.355549 TGTACTCCCTCCTTTCCGATTTA 58.644 43.478 0.00 0.00 0.00 1.40
360 364 4.966805 TGTACTCCCTCCTTTCCGATTTAT 59.033 41.667 0.00 0.00 0.00 1.40
361 365 5.427481 TGTACTCCCTCCTTTCCGATTTATT 59.573 40.000 0.00 0.00 0.00 1.40
362 366 4.781934 ACTCCCTCCTTTCCGATTTATTG 58.218 43.478 0.00 0.00 0.00 1.90
363 367 4.137543 CTCCCTCCTTTCCGATTTATTGG 58.862 47.826 0.00 0.00 0.00 3.16
364 368 3.117663 TCCCTCCTTTCCGATTTATTGGG 60.118 47.826 0.00 0.00 31.87 4.12
365 369 2.623416 CCTCCTTTCCGATTTATTGGGC 59.377 50.000 0.00 0.00 31.87 5.36
366 370 3.555966 CTCCTTTCCGATTTATTGGGCT 58.444 45.455 0.00 0.00 31.87 5.19
367 371 3.954258 CTCCTTTCCGATTTATTGGGCTT 59.046 43.478 0.00 0.00 31.87 4.35
368 372 5.118729 TCCTTTCCGATTTATTGGGCTTA 57.881 39.130 0.00 0.00 31.87 3.09
369 373 5.701224 TCCTTTCCGATTTATTGGGCTTAT 58.299 37.500 0.00 0.00 31.87 1.73
370 374 5.768164 TCCTTTCCGATTTATTGGGCTTATC 59.232 40.000 0.00 0.00 31.87 1.75
371 375 5.770162 CCTTTCCGATTTATTGGGCTTATCT 59.230 40.000 0.00 0.00 31.87 1.98
372 376 6.265422 CCTTTCCGATTTATTGGGCTTATCTT 59.735 38.462 0.00 0.00 31.87 2.40
373 377 7.201911 CCTTTCCGATTTATTGGGCTTATCTTT 60.202 37.037 0.00 0.00 31.87 2.52
374 378 8.754991 TTTCCGATTTATTGGGCTTATCTTTA 57.245 30.769 0.00 0.00 31.87 1.85
375 379 7.979444 TCCGATTTATTGGGCTTATCTTTAG 57.021 36.000 0.00 0.00 31.87 1.85
376 380 7.514721 TCCGATTTATTGGGCTTATCTTTAGT 58.485 34.615 0.00 0.00 31.87 2.24
377 381 7.996644 TCCGATTTATTGGGCTTATCTTTAGTT 59.003 33.333 0.00 0.00 31.87 2.24
378 382 8.630037 CCGATTTATTGGGCTTATCTTTAGTTT 58.370 33.333 0.00 0.00 0.00 2.66
383 387 7.790782 ATTGGGCTTATCTTTAGTTTTTCCA 57.209 32.000 0.00 0.00 0.00 3.53
384 388 7.790782 TTGGGCTTATCTTTAGTTTTTCCAT 57.209 32.000 0.00 0.00 0.00 3.41
385 389 7.790782 TGGGCTTATCTTTAGTTTTTCCATT 57.209 32.000 0.00 0.00 0.00 3.16
386 390 8.201242 TGGGCTTATCTTTAGTTTTTCCATTT 57.799 30.769 0.00 0.00 0.00 2.32
387 391 8.655901 TGGGCTTATCTTTAGTTTTTCCATTTT 58.344 29.630 0.00 0.00 0.00 1.82
403 407 9.447157 TTTTCCATTTTATAAGGCTCAATTTGG 57.553 29.630 0.00 0.00 0.00 3.28
404 408 7.732222 TCCATTTTATAAGGCTCAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
405 409 8.144862 TCCATTTTATAAGGCTCAATTTGGTT 57.855 30.769 0.00 0.00 0.00 3.67
406 410 8.040132 TCCATTTTATAAGGCTCAATTTGGTTG 58.960 33.333 0.00 0.00 39.25 3.77
407 411 7.823799 CCATTTTATAAGGCTCAATTTGGTTGT 59.176 33.333 0.00 0.00 38.95 3.32
408 412 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
409 413 9.791801 ATTTTATAAGGCTCAATTTGGTTGTTT 57.208 25.926 0.00 0.00 38.95 2.83
410 414 9.620259 TTTTATAAGGCTCAATTTGGTTGTTTT 57.380 25.926 0.00 0.00 38.95 2.43
411 415 8.825667 TTATAAGGCTCAATTTGGTTGTTTTC 57.174 30.769 0.00 0.00 38.95 2.29
412 416 4.071961 AGGCTCAATTTGGTTGTTTTCC 57.928 40.909 0.00 0.00 38.95 3.13
413 417 3.454082 AGGCTCAATTTGGTTGTTTTCCA 59.546 39.130 0.00 0.00 38.95 3.53
414 418 4.102996 AGGCTCAATTTGGTTGTTTTCCAT 59.897 37.500 0.00 0.00 38.95 3.41
415 419 4.452114 GGCTCAATTTGGTTGTTTTCCATC 59.548 41.667 0.00 0.00 38.95 3.51
416 420 5.055812 GCTCAATTTGGTTGTTTTCCATCA 58.944 37.500 0.00 0.00 38.95 3.07
417 421 5.050159 GCTCAATTTGGTTGTTTTCCATCAC 60.050 40.000 0.00 0.00 38.95 3.06
418 422 5.982356 TCAATTTGGTTGTTTTCCATCACA 58.018 33.333 0.00 0.00 38.95 3.58
419 423 6.590068 TCAATTTGGTTGTTTTCCATCACAT 58.410 32.000 0.00 0.00 38.95 3.21
420 424 6.482641 TCAATTTGGTTGTTTTCCATCACATG 59.517 34.615 0.00 0.00 38.95 3.21
421 425 5.350504 TTTGGTTGTTTTCCATCACATGT 57.649 34.783 0.00 0.00 34.75 3.21
422 426 5.350504 TTGGTTGTTTTCCATCACATGTT 57.649 34.783 0.00 0.00 34.75 2.71
423 427 4.942852 TGGTTGTTTTCCATCACATGTTC 58.057 39.130 0.00 0.00 0.00 3.18
424 428 4.403752 TGGTTGTTTTCCATCACATGTTCA 59.596 37.500 0.00 0.00 0.00 3.18
425 429 4.984161 GGTTGTTTTCCATCACATGTTCAG 59.016 41.667 0.00 0.00 0.00 3.02
426 430 5.221224 GGTTGTTTTCCATCACATGTTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
427 431 6.449698 GTTGTTTTCCATCACATGTTCAGAT 58.550 36.000 0.00 0.00 0.00 2.90
428 432 6.653526 TGTTTTCCATCACATGTTCAGATT 57.346 33.333 0.00 0.00 0.00 2.40
429 433 7.053316 TGTTTTCCATCACATGTTCAGATTT 57.947 32.000 0.00 0.00 0.00 2.17
430 434 7.147312 TGTTTTCCATCACATGTTCAGATTTC 58.853 34.615 0.00 0.00 0.00 2.17
431 435 6.897706 TTTCCATCACATGTTCAGATTTCA 57.102 33.333 0.00 0.00 0.00 2.69
432 436 6.897706 TTCCATCACATGTTCAGATTTCAA 57.102 33.333 0.00 0.00 0.00 2.69
433 437 6.505044 TCCATCACATGTTCAGATTTCAAG 57.495 37.500 0.00 0.00 0.00 3.02
434 438 5.416639 TCCATCACATGTTCAGATTTCAAGG 59.583 40.000 0.00 0.00 0.00 3.61
435 439 5.184479 CCATCACATGTTCAGATTTCAAGGT 59.816 40.000 0.00 0.00 0.00 3.50
436 440 5.694231 TCACATGTTCAGATTTCAAGGTG 57.306 39.130 0.00 0.00 0.00 4.00
437 441 4.022935 TCACATGTTCAGATTTCAAGGTGC 60.023 41.667 0.00 0.00 0.00 5.01
438 442 3.890756 ACATGTTCAGATTTCAAGGTGCA 59.109 39.130 0.00 0.00 0.00 4.57
439 443 4.525487 ACATGTTCAGATTTCAAGGTGCAT 59.475 37.500 0.00 0.00 0.00 3.96
440 444 5.011329 ACATGTTCAGATTTCAAGGTGCATT 59.989 36.000 0.00 0.00 0.00 3.56
441 445 6.209192 ACATGTTCAGATTTCAAGGTGCATTA 59.791 34.615 0.00 0.00 0.00 1.90
442 446 6.647334 TGTTCAGATTTCAAGGTGCATTAA 57.353 33.333 0.00 0.00 0.00 1.40
443 447 7.048629 TGTTCAGATTTCAAGGTGCATTAAA 57.951 32.000 0.00 0.00 0.00 1.52
444 448 7.669427 TGTTCAGATTTCAAGGTGCATTAAAT 58.331 30.769 0.00 0.00 0.00 1.40
445 449 7.814107 TGTTCAGATTTCAAGGTGCATTAAATC 59.186 33.333 0.00 2.14 37.00 2.17
446 450 7.465353 TCAGATTTCAAGGTGCATTAAATCA 57.535 32.000 17.06 3.49 38.45 2.57
447 451 8.070034 TCAGATTTCAAGGTGCATTAAATCAT 57.930 30.769 17.06 6.62 38.45 2.45
448 452 8.533657 TCAGATTTCAAGGTGCATTAAATCATT 58.466 29.630 17.06 0.00 38.45 2.57
449 453 8.600625 CAGATTTCAAGGTGCATTAAATCATTG 58.399 33.333 17.06 7.51 38.45 2.82
450 454 6.724694 TTTCAAGGTGCATTAAATCATTGC 57.275 33.333 0.00 0.00 36.91 3.56
451 455 5.402997 TCAAGGTGCATTAAATCATTGCA 57.597 34.783 0.00 0.00 43.63 4.08
452 456 5.979993 TCAAGGTGCATTAAATCATTGCAT 58.020 33.333 4.14 0.00 46.90 3.96
453 457 5.813157 TCAAGGTGCATTAAATCATTGCATG 59.187 36.000 4.14 0.11 46.90 4.06
454 458 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
455 459 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
456 460 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
457 461 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
458 462 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
459 463 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
460 464 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
461 465 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
462 466 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
466 470 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
467 471 7.812690 ATCATTGCATGCAAGTATTAAGAGA 57.187 32.000 34.15 20.12 39.47 3.10
468 472 7.628769 TCATTGCATGCAAGTATTAAGAGAA 57.371 32.000 34.15 10.64 39.47 2.87
469 473 8.054152 TCATTGCATGCAAGTATTAAGAGAAA 57.946 30.769 34.15 10.19 39.47 2.52
470 474 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
471 475 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
472 476 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
473 477 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
474 478 7.760794 TGCATGCAAGTATTAAGAGAAAATTGG 59.239 33.333 20.30 0.00 0.00 3.16
475 479 7.254218 GCATGCAAGTATTAAGAGAAAATTGGC 60.254 37.037 14.21 0.00 0.00 4.52
476 480 6.630071 TGCAAGTATTAAGAGAAAATTGGCC 58.370 36.000 0.00 0.00 0.00 5.36
477 481 6.210385 TGCAAGTATTAAGAGAAAATTGGCCA 59.790 34.615 0.00 0.00 0.00 5.36
478 482 7.096551 GCAAGTATTAAGAGAAAATTGGCCAA 58.903 34.615 23.00 23.00 0.00 4.52
479 483 7.765819 GCAAGTATTAAGAGAAAATTGGCCAAT 59.234 33.333 25.73 25.73 0.00 3.16
480 484 9.090692 CAAGTATTAAGAGAAAATTGGCCAATG 57.909 33.333 31.28 10.39 0.00 2.82
481 485 7.267857 AGTATTAAGAGAAAATTGGCCAATGC 58.732 34.615 31.28 21.91 0.00 3.56
482 486 5.480642 TTAAGAGAAAATTGGCCAATGCA 57.519 34.783 31.28 4.09 40.13 3.96
483 487 4.563140 AAGAGAAAATTGGCCAATGCAT 57.437 36.364 31.28 19.61 40.13 3.96
484 488 3.869065 AGAGAAAATTGGCCAATGCATG 58.131 40.909 31.28 0.00 40.13 4.06
485 489 3.262405 AGAGAAAATTGGCCAATGCATGT 59.738 39.130 31.28 18.06 40.13 3.21
486 490 4.467082 AGAGAAAATTGGCCAATGCATGTA 59.533 37.500 31.28 0.92 40.13 2.29
487 491 5.046448 AGAGAAAATTGGCCAATGCATGTAA 60.046 36.000 31.28 0.04 40.13 2.41
488 492 5.747342 AGAAAATTGGCCAATGCATGTAAT 58.253 33.333 31.28 10.50 40.13 1.89
489 493 6.181908 AGAAAATTGGCCAATGCATGTAATT 58.818 32.000 31.28 16.01 40.13 1.40
490 494 6.660094 AGAAAATTGGCCAATGCATGTAATTT 59.340 30.769 31.28 22.85 40.13 1.82
491 495 7.828223 AGAAAATTGGCCAATGCATGTAATTTA 59.172 29.630 31.28 0.00 40.13 1.40
492 496 8.522542 AAAATTGGCCAATGCATGTAATTTAT 57.477 26.923 31.28 8.18 40.13 1.40
493 497 7.499321 AATTGGCCAATGCATGTAATTTATG 57.501 32.000 31.28 0.00 40.13 1.90
552 556 3.577649 TTTTTGAGGAAAACACGTGCA 57.422 38.095 17.22 0.00 32.44 4.57
553 557 3.791973 TTTTGAGGAAAACACGTGCAT 57.208 38.095 17.22 1.22 0.00 3.96
554 558 3.791973 TTTGAGGAAAACACGTGCATT 57.208 38.095 17.22 11.01 0.00 3.56
555 559 4.902443 TTTGAGGAAAACACGTGCATTA 57.098 36.364 17.22 0.00 0.00 1.90
556 560 4.902443 TTGAGGAAAACACGTGCATTAA 57.098 36.364 17.22 0.00 0.00 1.40
557 561 5.446143 TTGAGGAAAACACGTGCATTAAT 57.554 34.783 17.22 2.94 0.00 1.40
558 562 5.446143 TGAGGAAAACACGTGCATTAATT 57.554 34.783 17.22 0.00 0.00 1.40
559 563 5.218885 TGAGGAAAACACGTGCATTAATTG 58.781 37.500 17.22 0.00 0.00 2.32
560 564 4.555262 AGGAAAACACGTGCATTAATTGG 58.445 39.130 17.22 0.00 0.00 3.16
561 565 3.677596 GGAAAACACGTGCATTAATTGGG 59.322 43.478 17.22 0.00 0.00 4.12
562 566 4.303282 GAAAACACGTGCATTAATTGGGT 58.697 39.130 17.22 0.00 0.00 4.51
563 567 3.296322 AACACGTGCATTAATTGGGTG 57.704 42.857 17.22 0.00 0.00 4.61
564 568 1.067915 ACACGTGCATTAATTGGGTGC 60.068 47.619 17.22 5.03 39.26 5.01
565 569 1.202114 CACGTGCATTAATTGGGTGCT 59.798 47.619 0.82 0.00 39.52 4.40
566 570 1.892474 ACGTGCATTAATTGGGTGCTT 59.108 42.857 11.22 0.00 39.52 3.91
567 571 2.298729 ACGTGCATTAATTGGGTGCTTT 59.701 40.909 11.22 0.00 39.52 3.51
568 572 3.244044 ACGTGCATTAATTGGGTGCTTTT 60.244 39.130 11.22 0.00 39.52 2.27
569 573 3.123284 CGTGCATTAATTGGGTGCTTTTG 59.877 43.478 11.22 0.00 39.52 2.44
589 593 9.420966 GCTTTTGCAAACTACAAAAAGTATTTC 57.579 29.630 12.39 0.00 44.07 2.17
592 596 7.995463 TGCAAACTACAAAAAGTATTTCACC 57.005 32.000 0.00 0.00 37.28 4.02
593 597 7.548097 TGCAAACTACAAAAAGTATTTCACCA 58.452 30.769 0.00 0.00 37.28 4.17
594 598 7.489757 TGCAAACTACAAAAAGTATTTCACCAC 59.510 33.333 0.00 0.00 37.28 4.16
595 599 7.704899 GCAAACTACAAAAAGTATTTCACCACT 59.295 33.333 0.00 0.00 37.28 4.00
596 600 9.233232 CAAACTACAAAAAGTATTTCACCACTC 57.767 33.333 0.00 0.00 37.28 3.51
597 601 8.514330 AACTACAAAAAGTATTTCACCACTCA 57.486 30.769 0.00 0.00 37.28 3.41
598 602 7.927048 ACTACAAAAAGTATTTCACCACTCAC 58.073 34.615 0.00 0.00 37.28 3.51
599 603 6.144078 ACAAAAAGTATTTCACCACTCACC 57.856 37.500 0.00 0.00 37.28 4.02
600 604 5.654650 ACAAAAAGTATTTCACCACTCACCA 59.345 36.000 0.00 0.00 37.28 4.17
601 605 6.323739 ACAAAAAGTATTTCACCACTCACCAT 59.676 34.615 0.00 0.00 37.28 3.55
602 606 6.575162 AAAAGTATTTCACCACTCACCATC 57.425 37.500 0.00 0.00 37.28 3.51
603 607 5.505181 AAGTATTTCACCACTCACCATCT 57.495 39.130 0.00 0.00 0.00 2.90
604 608 6.620877 AAGTATTTCACCACTCACCATCTA 57.379 37.500 0.00 0.00 0.00 1.98
605 609 6.814954 AGTATTTCACCACTCACCATCTAT 57.185 37.500 0.00 0.00 0.00 1.98
606 610 6.821388 AGTATTTCACCACTCACCATCTATC 58.179 40.000 0.00 0.00 0.00 2.08
607 611 5.965033 ATTTCACCACTCACCATCTATCT 57.035 39.130 0.00 0.00 0.00 1.98
608 612 5.762179 TTTCACCACTCACCATCTATCTT 57.238 39.130 0.00 0.00 0.00 2.40
609 613 4.743057 TCACCACTCACCATCTATCTTG 57.257 45.455 0.00 0.00 0.00 3.02
610 614 3.452264 TCACCACTCACCATCTATCTTGG 59.548 47.826 0.00 0.00 40.26 3.61
612 616 3.846588 ACCACTCACCATCTATCTTGGTT 59.153 43.478 0.00 0.00 45.19 3.67
613 617 4.194640 CCACTCACCATCTATCTTGGTTG 58.805 47.826 0.00 0.00 45.19 3.77
614 618 4.194640 CACTCACCATCTATCTTGGTTGG 58.805 47.826 0.00 0.00 45.19 3.77
615 619 3.846588 ACTCACCATCTATCTTGGTTGGT 59.153 43.478 0.00 0.00 45.19 3.67
618 622 4.494091 ACCATCTATCTTGGTTGGTGAG 57.506 45.455 0.00 0.00 45.19 3.51
619 623 4.104086 ACCATCTATCTTGGTTGGTGAGA 58.896 43.478 0.00 0.00 45.19 3.27
620 624 4.723789 ACCATCTATCTTGGTTGGTGAGAT 59.276 41.667 0.00 0.00 45.19 2.75
621 625 5.192522 ACCATCTATCTTGGTTGGTGAGATT 59.807 40.000 0.00 0.00 45.19 2.40
622 626 6.125029 CCATCTATCTTGGTTGGTGAGATTT 58.875 40.000 0.00 0.00 32.68 2.17
623 627 6.604795 CCATCTATCTTGGTTGGTGAGATTTT 59.395 38.462 0.00 0.00 32.68 1.82
624 628 7.123247 CCATCTATCTTGGTTGGTGAGATTTTT 59.877 37.037 0.00 0.00 32.68 1.94
625 629 7.452880 TCTATCTTGGTTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 32.68 2.44
626 630 7.230747 TCTATCTTGGTTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 32.68 2.69
627 631 6.729690 ATCTTGGTTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
628 632 6.729690 TCTTGGTTGGTGAGATTTTTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
629 633 7.123355 TCTTGGTTGGTGAGATTTTTGAATT 57.877 32.000 0.00 0.00 0.00 2.17
630 634 6.985645 TCTTGGTTGGTGAGATTTTTGAATTG 59.014 34.615 0.00 0.00 0.00 2.32
631 635 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
632 636 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
633 637 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
634 638 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
635 639 4.834496 TGGTGAGATTTTTGAATTGAGCCT 59.166 37.500 0.00 0.00 0.00 4.58
636 640 5.305128 TGGTGAGATTTTTGAATTGAGCCTT 59.695 36.000 0.00 0.00 0.00 4.35
637 641 6.493115 TGGTGAGATTTTTGAATTGAGCCTTA 59.507 34.615 0.00 0.00 0.00 2.69
638 642 7.178983 TGGTGAGATTTTTGAATTGAGCCTTAT 59.821 33.333 0.00 0.00 0.00 1.73
639 643 8.686334 GGTGAGATTTTTGAATTGAGCCTTATA 58.314 33.333 0.00 0.00 0.00 0.98
643 647 9.875691 AGATTTTTGAATTGAGCCTTATAAACC 57.124 29.630 0.00 0.00 0.00 3.27
644 648 8.702163 ATTTTTGAATTGAGCCTTATAAACCG 57.298 30.769 0.00 0.00 0.00 4.44
645 649 5.828299 TTGAATTGAGCCTTATAAACCGG 57.172 39.130 0.00 0.00 0.00 5.28
646 650 5.105567 TGAATTGAGCCTTATAAACCGGA 57.894 39.130 9.46 0.00 0.00 5.14
647 651 5.502079 TGAATTGAGCCTTATAAACCGGAA 58.498 37.500 9.46 0.00 0.00 4.30
648 652 5.946972 TGAATTGAGCCTTATAAACCGGAAA 59.053 36.000 9.46 0.00 0.00 3.13
649 653 6.094881 TGAATTGAGCCTTATAAACCGGAAAG 59.905 38.462 9.46 3.38 0.00 2.62
651 655 3.520317 TGAGCCTTATAAACCGGAAAGGA 59.480 43.478 9.46 0.00 45.00 3.36
652 656 4.127907 GAGCCTTATAAACCGGAAAGGAG 58.872 47.826 9.46 0.00 45.00 3.69
653 657 3.118000 AGCCTTATAAACCGGAAAGGAGG 60.118 47.826 9.46 9.29 45.00 4.30
654 658 3.816994 CCTTATAAACCGGAAAGGAGGG 58.183 50.000 9.46 0.00 45.00 4.30
655 659 3.457012 CCTTATAAACCGGAAAGGAGGGA 59.543 47.826 9.46 0.00 45.00 4.20
656 660 4.444449 CCTTATAAACCGGAAAGGAGGGAG 60.444 50.000 9.46 0.00 45.00 4.30
657 661 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
658 662 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
659 663 2.034436 AACCGGAAAGGAGGGAGTAA 57.966 50.000 9.46 0.00 45.00 2.24
660 664 2.265526 ACCGGAAAGGAGGGAGTAAT 57.734 50.000 9.46 0.00 45.00 1.89
661 665 3.409804 ACCGGAAAGGAGGGAGTAATA 57.590 47.619 9.46 0.00 45.00 0.98
801 805 2.088950 AGTACCAAAACGATGACCCG 57.911 50.000 0.00 0.00 0.00 5.28
914 922 2.646930 TGGCATCCTAACAATCTGCAG 58.353 47.619 7.63 7.63 34.56 4.41
1060 1108 1.198713 GAGATGAGGAACCAGAGGCA 58.801 55.000 0.00 0.00 0.00 4.75
1175 1223 0.975556 TTAGCTCCTCATCCACGGCA 60.976 55.000 0.00 0.00 0.00 5.69
1210 1258 1.029681 CATCACATCACCATGGGCAG 58.970 55.000 18.09 5.69 32.78 4.85
1369 1420 1.809869 CCAGGCGAGAGATCGTCAA 59.190 57.895 4.98 0.00 40.59 3.18
1546 1597 4.006780 TCTCAGATTACTTGCACAGCAA 57.993 40.909 4.22 4.22 46.80 3.91
1793 1847 0.922626 GCCCCTTTGATCCTCCTTCT 59.077 55.000 0.00 0.00 0.00 2.85
2033 2087 1.358759 GAGCAGGCTACTCGAGAGC 59.641 63.158 21.68 21.53 39.33 4.09
2137 2191 0.525029 GAGTACTACGGCCAAGACGC 60.525 60.000 2.24 0.00 37.73 5.19
2162 2216 4.101119 TCCTTTCCATGGTAAGCTAGCTAC 59.899 45.833 22.26 15.49 0.00 3.58
2165 2219 2.365617 TCCATGGTAAGCTAGCTACAGC 59.634 50.000 19.70 18.21 42.12 4.40
2415 2479 0.832626 TCATGACATGCCGTCCATCT 59.167 50.000 10.76 0.00 44.71 2.90
2629 2884 6.811665 CCATACTTTTGTAGAATCTCGTCACA 59.188 38.462 0.00 0.00 38.44 3.58
2640 2895 1.463831 TCTCGTCACAGAACGACTAGC 59.536 52.381 0.00 0.00 46.02 3.42
2643 2898 3.268330 TCGTCACAGAACGACTAGCTAT 58.732 45.455 0.00 0.00 46.02 2.97
2644 2899 3.309138 TCGTCACAGAACGACTAGCTATC 59.691 47.826 0.00 0.00 46.02 2.08
2645 2900 3.310227 CGTCACAGAACGACTAGCTATCT 59.690 47.826 0.00 0.00 45.37 1.98
2646 2901 4.507021 CGTCACAGAACGACTAGCTATCTA 59.493 45.833 0.00 0.00 45.37 1.98
2647 2902 5.556758 CGTCACAGAACGACTAGCTATCTAC 60.557 48.000 0.00 0.00 45.37 2.59
2779 3034 5.484715 TGGGTTAACTTTTGGATCTCTACG 58.515 41.667 5.42 0.00 0.00 3.51
2825 3080 2.764572 CCGTAGTTTGGTAGGATCCTGT 59.235 50.000 25.28 0.86 0.00 4.00
2829 3084 2.572104 AGTTTGGTAGGATCCTGTCACC 59.428 50.000 25.28 22.94 0.00 4.02
2830 3085 1.191535 TTGGTAGGATCCTGTCACCG 58.808 55.000 25.28 0.00 31.64 4.94
2831 3086 0.333652 TGGTAGGATCCTGTCACCGA 59.666 55.000 25.28 11.48 31.64 4.69
2832 3087 1.063190 TGGTAGGATCCTGTCACCGAT 60.063 52.381 25.28 0.00 31.64 4.18
2929 3184 3.616956 CAAGGATTGTCCACTCTAGCA 57.383 47.619 0.00 0.00 42.34 3.49
2968 3223 9.426837 GAGATCTACTAGTACTACGATTCATGT 57.573 37.037 0.00 0.00 0.00 3.21
3008 3270 4.801891 TGCAACGAATCGAAGTTACTACT 58.198 39.130 10.55 0.00 35.68 2.57
3009 3271 5.941733 TGCAACGAATCGAAGTTACTACTA 58.058 37.500 10.55 0.00 33.17 1.82
3010 3272 6.025896 TGCAACGAATCGAAGTTACTACTAG 58.974 40.000 10.55 0.00 33.17 2.57
3011 3273 5.052502 GCAACGAATCGAAGTTACTACTAGC 60.053 44.000 10.55 0.00 33.17 3.42
3012 3274 5.808042 ACGAATCGAAGTTACTACTAGCA 57.192 39.130 10.55 0.00 33.17 3.49
3013 3275 5.567552 ACGAATCGAAGTTACTACTAGCAC 58.432 41.667 10.55 0.00 33.17 4.40
3041 3303 6.842280 TGAGCCCAAACATAAGATACTACCTA 59.158 38.462 0.00 0.00 0.00 3.08
3042 3304 7.015292 TGAGCCCAAACATAAGATACTACCTAG 59.985 40.741 0.00 0.00 0.00 3.02
3043 3305 6.844917 AGCCCAAACATAAGATACTACCTAGT 59.155 38.462 0.00 0.00 40.24 2.57
3044 3306 8.008922 AGCCCAAACATAAGATACTACCTAGTA 58.991 37.037 0.00 0.00 42.43 1.82
3096 3358 5.648092 GGCAGTCACAAATATTGGTCTTAGT 59.352 40.000 0.00 0.00 34.12 2.24
3166 3439 3.273434 TGCAGCCATGTAAGAGCTTAAG 58.727 45.455 0.00 0.00 33.70 1.85
3167 3440 2.032675 GCAGCCATGTAAGAGCTTAAGC 59.967 50.000 20.09 20.09 42.49 3.09
3186 3459 2.184579 GGCAGTACGAGGAGGTGC 59.815 66.667 0.00 0.00 0.00 5.01
3265 3538 3.458044 TCACCTCTGTGATGTACTCCT 57.542 47.619 0.00 0.00 46.40 3.69
3269 3542 2.099921 CCTCTGTGATGTACTCCTTCCG 59.900 54.545 0.00 0.00 0.00 4.30
3364 3637 4.232091 TGGAGGGAGTATATTGGTTCTCC 58.768 47.826 0.00 0.00 43.84 3.71
3373 3646 7.179076 AGTATATTGGTTCTCCACGTAGTTT 57.821 36.000 0.00 0.00 41.61 2.66
3377 3650 3.876341 TGGTTCTCCACGTAGTTTTGTT 58.124 40.909 0.00 0.00 41.61 2.83
3398 3671 2.355132 TCGAGTAGAGTTTCAGGATCGC 59.645 50.000 0.00 0.00 0.00 4.58
3399 3672 2.541999 CGAGTAGAGTTTCAGGATCGCC 60.542 54.545 0.00 0.00 0.00 5.54
3400 3673 1.405821 AGTAGAGTTTCAGGATCGCCG 59.594 52.381 0.00 0.00 39.96 6.46
3401 3674 1.404391 GTAGAGTTTCAGGATCGCCGA 59.596 52.381 0.00 0.00 39.96 5.54
3402 3675 1.115467 AGAGTTTCAGGATCGCCGAT 58.885 50.000 0.00 0.00 39.96 4.18
3403 3676 2.307768 AGAGTTTCAGGATCGCCGATA 58.692 47.619 0.00 0.00 39.96 2.92
3404 3677 2.894126 AGAGTTTCAGGATCGCCGATAT 59.106 45.455 0.00 0.00 39.96 1.63
3405 3678 3.057174 AGAGTTTCAGGATCGCCGATATC 60.057 47.826 0.00 0.00 39.96 1.63
3406 3679 2.628178 AGTTTCAGGATCGCCGATATCA 59.372 45.455 0.00 0.00 39.96 2.15
3407 3680 3.259374 AGTTTCAGGATCGCCGATATCAT 59.741 43.478 0.00 0.00 39.96 2.45
3408 3681 4.462834 AGTTTCAGGATCGCCGATATCATA 59.537 41.667 0.00 0.00 39.96 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.917760 CTCGGTCCGGGATCTGGC 61.918 72.222 4.69 0.00 0.00 4.85
23 24 3.917760 GCCTCGGTCCGGGATCTG 61.918 72.222 14.38 0.00 0.00 2.90
129 132 3.733960 CCCGTGACGTCTCTCGCA 61.734 66.667 17.92 0.00 44.19 5.10
140 143 0.903454 GGGACCTCTTCTTCCCGTGA 60.903 60.000 0.00 0.00 42.35 4.35
273 277 4.873129 CACGTCGCTCCATCCCCG 62.873 72.222 0.00 0.00 0.00 5.73
285 289 1.153349 GGAATCCAGCCCTCACGTC 60.153 63.158 0.00 0.00 0.00 4.34
289 293 2.925966 AAAATGGAATCCAGCCCTCA 57.074 45.000 8.40 0.00 36.75 3.86
301 305 9.400638 GTTCAACATTACGACAATAAAAATGGA 57.599 29.630 0.00 0.00 32.97 3.41
333 337 2.612221 CGGAAAGGAGGGAGTACAACAC 60.612 54.545 0.00 0.00 0.00 3.32
339 343 5.163237 CCAATAAATCGGAAAGGAGGGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
341 345 4.137543 CCAATAAATCGGAAAGGAGGGAG 58.862 47.826 0.00 0.00 0.00 4.30
343 347 3.222603 CCCAATAAATCGGAAAGGAGGG 58.777 50.000 0.00 0.00 0.00 4.30
344 348 2.623416 GCCCAATAAATCGGAAAGGAGG 59.377 50.000 0.00 0.00 0.00 4.30
345 349 3.555966 AGCCCAATAAATCGGAAAGGAG 58.444 45.455 0.00 0.00 0.00 3.69
346 350 3.662759 AGCCCAATAAATCGGAAAGGA 57.337 42.857 0.00 0.00 0.00 3.36
347 351 5.770162 AGATAAGCCCAATAAATCGGAAAGG 59.230 40.000 0.00 0.00 0.00 3.11
348 352 6.884280 AGATAAGCCCAATAAATCGGAAAG 57.116 37.500 0.00 0.00 0.00 2.62
349 353 7.654022 AAAGATAAGCCCAATAAATCGGAAA 57.346 32.000 0.00 0.00 0.00 3.13
350 354 7.996644 ACTAAAGATAAGCCCAATAAATCGGAA 59.003 33.333 0.00 0.00 0.00 4.30
351 355 7.514721 ACTAAAGATAAGCCCAATAAATCGGA 58.485 34.615 0.00 0.00 0.00 4.55
352 356 7.745620 ACTAAAGATAAGCCCAATAAATCGG 57.254 36.000 0.00 0.00 0.00 4.18
357 361 9.315363 TGGAAAAACTAAAGATAAGCCCAATAA 57.685 29.630 0.00 0.00 0.00 1.40
358 362 8.887264 TGGAAAAACTAAAGATAAGCCCAATA 57.113 30.769 0.00 0.00 0.00 1.90
359 363 7.790782 TGGAAAAACTAAAGATAAGCCCAAT 57.209 32.000 0.00 0.00 0.00 3.16
360 364 7.790782 ATGGAAAAACTAAAGATAAGCCCAA 57.209 32.000 0.00 0.00 0.00 4.12
361 365 7.790782 AATGGAAAAACTAAAGATAAGCCCA 57.209 32.000 0.00 0.00 0.00 5.36
377 381 9.447157 CCAAATTGAGCCTTATAAAATGGAAAA 57.553 29.630 0.00 0.00 0.00 2.29
378 382 8.601546 ACCAAATTGAGCCTTATAAAATGGAAA 58.398 29.630 0.00 0.00 0.00 3.13
379 383 8.144862 ACCAAATTGAGCCTTATAAAATGGAA 57.855 30.769 0.00 0.00 0.00 3.53
380 384 7.732222 ACCAAATTGAGCCTTATAAAATGGA 57.268 32.000 0.00 0.00 0.00 3.41
381 385 7.823799 ACAACCAAATTGAGCCTTATAAAATGG 59.176 33.333 0.00 0.00 41.23 3.16
382 386 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
383 387 9.791801 AAACAACCAAATTGAGCCTTATAAAAT 57.208 25.926 0.00 0.00 41.23 1.82
384 388 9.620259 AAAACAACCAAATTGAGCCTTATAAAA 57.380 25.926 0.00 0.00 41.23 1.52
385 389 9.267084 GAAAACAACCAAATTGAGCCTTATAAA 57.733 29.630 0.00 0.00 41.23 1.40
386 390 7.875554 GGAAAACAACCAAATTGAGCCTTATAA 59.124 33.333 0.00 0.00 41.23 0.98
387 391 7.015682 TGGAAAACAACCAAATTGAGCCTTATA 59.984 33.333 0.00 0.00 41.23 0.98
388 392 6.183361 TGGAAAACAACCAAATTGAGCCTTAT 60.183 34.615 0.00 0.00 41.23 1.73
389 393 5.129485 TGGAAAACAACCAAATTGAGCCTTA 59.871 36.000 0.00 0.00 41.23 2.69
390 394 4.080638 TGGAAAACAACCAAATTGAGCCTT 60.081 37.500 0.00 0.00 41.23 4.35
391 395 3.454082 TGGAAAACAACCAAATTGAGCCT 59.546 39.130 0.00 0.00 41.23 4.58
392 396 3.802866 TGGAAAACAACCAAATTGAGCC 58.197 40.909 0.00 0.00 41.23 4.70
393 397 5.050159 GTGATGGAAAACAACCAAATTGAGC 60.050 40.000 0.00 0.00 41.23 4.26
394 398 6.047870 TGTGATGGAAAACAACCAAATTGAG 58.952 36.000 0.00 0.00 41.23 3.02
395 399 5.982356 TGTGATGGAAAACAACCAAATTGA 58.018 33.333 0.00 0.00 41.23 2.57
396 400 6.260493 ACATGTGATGGAAAACAACCAAATTG 59.740 34.615 0.00 0.00 40.93 2.32
397 401 6.355747 ACATGTGATGGAAAACAACCAAATT 58.644 32.000 0.00 0.00 40.93 1.82
398 402 5.927819 ACATGTGATGGAAAACAACCAAAT 58.072 33.333 0.00 0.00 40.93 2.32
399 403 5.350504 ACATGTGATGGAAAACAACCAAA 57.649 34.783 0.00 0.00 40.93 3.28
400 404 5.105187 TGAACATGTGATGGAAAACAACCAA 60.105 36.000 0.00 0.00 40.93 3.67
401 405 4.403752 TGAACATGTGATGGAAAACAACCA 59.596 37.500 0.00 0.00 41.83 3.67
402 406 4.942852 TGAACATGTGATGGAAAACAACC 58.057 39.130 0.00 0.00 33.60 3.77
403 407 5.830912 TCTGAACATGTGATGGAAAACAAC 58.169 37.500 0.00 0.00 33.60 3.32
404 408 6.653526 ATCTGAACATGTGATGGAAAACAA 57.346 33.333 0.00 0.00 33.60 2.83
405 409 6.653526 AATCTGAACATGTGATGGAAAACA 57.346 33.333 0.00 0.00 33.60 2.83
406 410 7.147312 TGAAATCTGAACATGTGATGGAAAAC 58.853 34.615 0.00 0.00 33.60 2.43
407 411 7.287512 TGAAATCTGAACATGTGATGGAAAA 57.712 32.000 0.00 0.00 33.60 2.29
408 412 6.897706 TGAAATCTGAACATGTGATGGAAA 57.102 33.333 0.00 0.00 33.60 3.13
409 413 6.071784 CCTTGAAATCTGAACATGTGATGGAA 60.072 38.462 0.00 0.00 33.60 3.53
410 414 5.416639 CCTTGAAATCTGAACATGTGATGGA 59.583 40.000 0.00 0.00 33.60 3.41
411 415 5.184479 ACCTTGAAATCTGAACATGTGATGG 59.816 40.000 0.00 0.00 33.60 3.51
412 416 6.090783 CACCTTGAAATCTGAACATGTGATG 58.909 40.000 0.00 0.00 0.00 3.07
413 417 5.336213 GCACCTTGAAATCTGAACATGTGAT 60.336 40.000 0.00 0.00 0.00 3.06
414 418 4.022935 GCACCTTGAAATCTGAACATGTGA 60.023 41.667 0.00 0.00 0.00 3.58
415 419 4.232221 GCACCTTGAAATCTGAACATGTG 58.768 43.478 0.00 0.00 0.00 3.21
416 420 3.890756 TGCACCTTGAAATCTGAACATGT 59.109 39.130 0.00 0.00 0.00 3.21
417 421 4.508461 TGCACCTTGAAATCTGAACATG 57.492 40.909 0.00 0.00 0.00 3.21
418 422 5.733620 AATGCACCTTGAAATCTGAACAT 57.266 34.783 0.00 0.00 0.00 2.71
419 423 6.647334 TTAATGCACCTTGAAATCTGAACA 57.353 33.333 0.00 0.00 0.00 3.18
420 424 7.814107 TGATTTAATGCACCTTGAAATCTGAAC 59.186 33.333 15.69 0.00 37.39 3.18
421 425 7.894708 TGATTTAATGCACCTTGAAATCTGAA 58.105 30.769 15.69 1.53 37.39 3.02
422 426 7.465353 TGATTTAATGCACCTTGAAATCTGA 57.535 32.000 15.69 0.00 37.39 3.27
423 427 8.600625 CAATGATTTAATGCACCTTGAAATCTG 58.399 33.333 15.69 7.90 37.39 2.90
424 428 7.279313 GCAATGATTTAATGCACCTTGAAATCT 59.721 33.333 15.69 5.35 39.81 2.40
425 429 7.064847 TGCAATGATTTAATGCACCTTGAAATC 59.935 33.333 0.00 1.22 44.52 2.17
426 430 6.879993 TGCAATGATTTAATGCACCTTGAAAT 59.120 30.769 0.00 0.00 44.52 2.17
427 431 6.228995 TGCAATGATTTAATGCACCTTGAAA 58.771 32.000 0.00 0.00 44.52 2.69
428 432 5.791666 TGCAATGATTTAATGCACCTTGAA 58.208 33.333 0.00 0.00 44.52 2.69
429 433 5.402997 TGCAATGATTTAATGCACCTTGA 57.597 34.783 0.00 0.00 44.52 3.02
446 450 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
447 451 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
448 452 7.760794 CCAATTTTCTCTTAATACTTGCATGCA 59.239 33.333 18.46 18.46 0.00 3.96
449 453 7.254218 GCCAATTTTCTCTTAATACTTGCATGC 60.254 37.037 11.82 11.82 0.00 4.06
450 454 7.223387 GGCCAATTTTCTCTTAATACTTGCATG 59.777 37.037 0.00 0.00 0.00 4.06
451 455 7.093377 TGGCCAATTTTCTCTTAATACTTGCAT 60.093 33.333 0.61 0.00 0.00 3.96
452 456 6.210385 TGGCCAATTTTCTCTTAATACTTGCA 59.790 34.615 0.61 0.00 0.00 4.08
453 457 6.630071 TGGCCAATTTTCTCTTAATACTTGC 58.370 36.000 0.61 0.00 0.00 4.01
454 458 9.090692 CATTGGCCAATTTTCTCTTAATACTTG 57.909 33.333 28.68 8.75 0.00 3.16
455 459 7.765819 GCATTGGCCAATTTTCTCTTAATACTT 59.234 33.333 28.68 0.00 0.00 2.24
456 460 7.093377 TGCATTGGCCAATTTTCTCTTAATACT 60.093 33.333 28.68 0.00 40.13 2.12
457 461 7.041107 TGCATTGGCCAATTTTCTCTTAATAC 58.959 34.615 28.68 0.00 40.13 1.89
458 462 7.180322 TGCATTGGCCAATTTTCTCTTAATA 57.820 32.000 28.68 0.00 40.13 0.98
459 463 6.052405 TGCATTGGCCAATTTTCTCTTAAT 57.948 33.333 28.68 0.43 40.13 1.40
460 464 5.480642 TGCATTGGCCAATTTTCTCTTAA 57.519 34.783 28.68 0.00 40.13 1.85
461 465 5.046448 ACATGCATTGGCCAATTTTCTCTTA 60.046 36.000 28.68 8.87 40.13 2.10
462 466 4.258543 CATGCATTGGCCAATTTTCTCTT 58.741 39.130 28.68 2.73 40.13 2.85
463 467 3.262405 ACATGCATTGGCCAATTTTCTCT 59.738 39.130 28.68 3.59 40.13 3.10
464 468 3.602483 ACATGCATTGGCCAATTTTCTC 58.398 40.909 28.68 14.71 40.13 2.87
465 469 3.706600 ACATGCATTGGCCAATTTTCT 57.293 38.095 28.68 10.69 40.13 2.52
466 470 6.439675 AATTACATGCATTGGCCAATTTTC 57.560 33.333 28.68 19.36 40.13 2.29
467 471 6.837471 AAATTACATGCATTGGCCAATTTT 57.163 29.167 28.68 19.34 40.13 1.82
468 472 7.468906 GCATAAATTACATGCATTGGCCAATTT 60.469 33.333 28.68 18.70 46.47 1.82
469 473 6.016943 GCATAAATTACATGCATTGGCCAATT 60.017 34.615 28.68 16.07 46.47 2.32
470 474 5.470777 GCATAAATTACATGCATTGGCCAAT 59.529 36.000 25.73 25.73 46.47 3.16
471 475 4.815308 GCATAAATTACATGCATTGGCCAA 59.185 37.500 23.00 23.00 46.47 4.52
472 476 4.378774 GCATAAATTACATGCATTGGCCA 58.621 39.130 0.00 0.00 46.47 5.36
473 477 4.996062 GCATAAATTACATGCATTGGCC 57.004 40.909 16.27 0.00 46.47 5.36
532 536 3.577649 TGCACGTGTTTTCCTCAAAAA 57.422 38.095 18.38 0.00 33.17 1.94
533 537 3.791973 ATGCACGTGTTTTCCTCAAAA 57.208 38.095 18.38 0.00 0.00 2.44
534 538 3.791973 AATGCACGTGTTTTCCTCAAA 57.208 38.095 18.38 0.00 0.00 2.69
535 539 4.902443 TTAATGCACGTGTTTTCCTCAA 57.098 36.364 18.38 0.10 0.00 3.02
536 540 5.218885 CAATTAATGCACGTGTTTTCCTCA 58.781 37.500 18.38 4.75 0.00 3.86
537 541 4.621034 CCAATTAATGCACGTGTTTTCCTC 59.379 41.667 18.38 0.00 0.00 3.71
538 542 4.555262 CCAATTAATGCACGTGTTTTCCT 58.445 39.130 18.38 0.00 0.00 3.36
539 543 3.677596 CCCAATTAATGCACGTGTTTTCC 59.322 43.478 18.38 0.00 0.00 3.13
540 544 4.149747 CACCCAATTAATGCACGTGTTTTC 59.850 41.667 18.38 0.09 0.00 2.29
541 545 4.054671 CACCCAATTAATGCACGTGTTTT 58.945 39.130 18.38 13.20 0.00 2.43
542 546 3.648009 CACCCAATTAATGCACGTGTTT 58.352 40.909 18.38 13.55 0.00 2.83
543 547 2.609244 GCACCCAATTAATGCACGTGTT 60.609 45.455 18.38 7.04 39.23 3.32
544 548 1.067915 GCACCCAATTAATGCACGTGT 60.068 47.619 18.38 0.00 39.23 4.49
545 549 1.202114 AGCACCCAATTAATGCACGTG 59.798 47.619 12.28 12.28 41.97 4.49
546 550 1.544724 AGCACCCAATTAATGCACGT 58.455 45.000 9.62 0.00 41.97 4.49
547 551 2.652941 AAGCACCCAATTAATGCACG 57.347 45.000 9.62 0.00 41.97 5.34
548 552 3.120234 GCAAAAGCACCCAATTAATGCAC 60.120 43.478 9.62 0.00 41.97 4.57
549 553 3.072944 GCAAAAGCACCCAATTAATGCA 58.927 40.909 9.62 0.00 41.97 3.96
550 554 3.072944 TGCAAAAGCACCCAATTAATGC 58.927 40.909 0.00 0.60 39.74 3.56
551 555 5.239087 AGTTTGCAAAAGCACCCAATTAATG 59.761 36.000 14.67 0.00 0.00 1.90
552 556 5.375773 AGTTTGCAAAAGCACCCAATTAAT 58.624 33.333 14.67 0.00 0.00 1.40
553 557 4.775236 AGTTTGCAAAAGCACCCAATTAA 58.225 34.783 14.67 0.00 0.00 1.40
554 558 4.414337 AGTTTGCAAAAGCACCCAATTA 57.586 36.364 14.67 0.00 0.00 1.40
555 559 3.280197 AGTTTGCAAAAGCACCCAATT 57.720 38.095 14.67 0.00 0.00 2.32
556 560 3.133721 TGTAGTTTGCAAAAGCACCCAAT 59.866 39.130 14.67 0.00 0.00 3.16
557 561 2.497675 TGTAGTTTGCAAAAGCACCCAA 59.502 40.909 14.67 0.00 0.00 4.12
558 562 2.103373 TGTAGTTTGCAAAAGCACCCA 58.897 42.857 14.67 2.54 0.00 4.51
559 563 2.880963 TGTAGTTTGCAAAAGCACCC 57.119 45.000 14.67 0.00 0.00 4.61
560 564 5.121611 ACTTTTTGTAGTTTGCAAAAGCACC 59.878 36.000 14.67 0.55 43.70 5.01
561 565 6.164408 ACTTTTTGTAGTTTGCAAAAGCAC 57.836 33.333 14.67 12.12 43.70 4.40
562 566 8.485976 AATACTTTTTGTAGTTTGCAAAAGCA 57.514 26.923 14.67 10.19 43.70 3.91
563 567 9.420966 GAAATACTTTTTGTAGTTTGCAAAAGC 57.579 29.630 14.67 7.63 43.70 3.51
566 570 8.874816 GGTGAAATACTTTTTGTAGTTTGCAAA 58.125 29.630 8.05 8.05 39.21 3.68
567 571 8.035394 TGGTGAAATACTTTTTGTAGTTTGCAA 58.965 29.630 0.00 0.00 39.21 4.08
568 572 7.489757 GTGGTGAAATACTTTTTGTAGTTTGCA 59.510 33.333 0.00 0.00 39.21 4.08
569 573 7.704899 AGTGGTGAAATACTTTTTGTAGTTTGC 59.295 33.333 0.00 0.00 39.21 3.68
570 574 9.233232 GAGTGGTGAAATACTTTTTGTAGTTTG 57.767 33.333 0.00 0.00 39.21 2.93
571 575 8.962679 TGAGTGGTGAAATACTTTTTGTAGTTT 58.037 29.630 0.00 0.00 39.21 2.66
572 576 8.403236 GTGAGTGGTGAAATACTTTTTGTAGTT 58.597 33.333 0.00 0.00 41.41 2.24
573 577 7.012989 GGTGAGTGGTGAAATACTTTTTGTAGT 59.987 37.037 0.00 0.00 34.24 2.73
574 578 7.012894 TGGTGAGTGGTGAAATACTTTTTGTAG 59.987 37.037 0.00 0.00 34.24 2.74
575 579 6.829298 TGGTGAGTGGTGAAATACTTTTTGTA 59.171 34.615 0.00 0.00 35.37 2.41
576 580 5.654650 TGGTGAGTGGTGAAATACTTTTTGT 59.345 36.000 0.00 0.00 0.00 2.83
577 581 6.142818 TGGTGAGTGGTGAAATACTTTTTG 57.857 37.500 0.00 0.00 0.00 2.44
578 582 6.777580 AGATGGTGAGTGGTGAAATACTTTTT 59.222 34.615 0.00 0.00 0.00 1.94
579 583 6.306987 AGATGGTGAGTGGTGAAATACTTTT 58.693 36.000 0.00 0.00 0.00 2.27
580 584 5.880901 AGATGGTGAGTGGTGAAATACTTT 58.119 37.500 0.00 0.00 0.00 2.66
581 585 5.505181 AGATGGTGAGTGGTGAAATACTT 57.495 39.130 0.00 0.00 0.00 2.24
582 586 6.613271 AGATAGATGGTGAGTGGTGAAATACT 59.387 38.462 0.00 0.00 0.00 2.12
583 587 6.821388 AGATAGATGGTGAGTGGTGAAATAC 58.179 40.000 0.00 0.00 0.00 1.89
584 588 7.275183 CAAGATAGATGGTGAGTGGTGAAATA 58.725 38.462 0.00 0.00 0.00 1.40
585 589 5.965033 AGATAGATGGTGAGTGGTGAAAT 57.035 39.130 0.00 0.00 0.00 2.17
586 590 5.491070 CAAGATAGATGGTGAGTGGTGAAA 58.509 41.667 0.00 0.00 0.00 2.69
587 591 4.080919 CCAAGATAGATGGTGAGTGGTGAA 60.081 45.833 0.00 0.00 33.08 3.18
588 592 3.452264 CCAAGATAGATGGTGAGTGGTGA 59.548 47.826 0.00 0.00 33.08 4.02
589 593 3.801698 CCAAGATAGATGGTGAGTGGTG 58.198 50.000 0.00 0.00 33.08 4.17
598 602 4.760530 TCTCACCAACCAAGATAGATGG 57.239 45.455 0.00 0.00 43.84 3.51
599 603 7.636150 AAAATCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
600 604 7.890127 TCAAAAATCTCACCAACCAAGATAGAT 59.110 33.333 0.00 0.00 0.00 1.98
601 605 7.230747 TCAAAAATCTCACCAACCAAGATAGA 58.769 34.615 0.00 0.00 0.00 1.98
602 606 7.452880 TCAAAAATCTCACCAACCAAGATAG 57.547 36.000 0.00 0.00 0.00 2.08
603 607 7.831691 TTCAAAAATCTCACCAACCAAGATA 57.168 32.000 0.00 0.00 0.00 1.98
604 608 6.729690 TTCAAAAATCTCACCAACCAAGAT 57.270 33.333 0.00 0.00 0.00 2.40
605 609 6.729690 ATTCAAAAATCTCACCAACCAAGA 57.270 33.333 0.00 0.00 0.00 3.02
606 610 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
607 611 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
608 612 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
609 613 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
610 614 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
611 615 5.305128 AGGCTCAATTCAAAAATCTCACCAA 59.695 36.000 0.00 0.00 0.00 3.67
612 616 4.834496 AGGCTCAATTCAAAAATCTCACCA 59.166 37.500 0.00 0.00 0.00 4.17
613 617 5.397142 AGGCTCAATTCAAAAATCTCACC 57.603 39.130 0.00 0.00 0.00 4.02
617 621 9.875691 GGTTTATAAGGCTCAATTCAAAAATCT 57.124 29.630 0.00 0.00 0.00 2.40
618 622 8.807581 CGGTTTATAAGGCTCAATTCAAAAATC 58.192 33.333 0.00 0.00 0.00 2.17
619 623 7.763985 CCGGTTTATAAGGCTCAATTCAAAAAT 59.236 33.333 0.00 0.00 0.00 1.82
620 624 7.039644 TCCGGTTTATAAGGCTCAATTCAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
621 625 6.434652 TCCGGTTTATAAGGCTCAATTCAAAA 59.565 34.615 0.00 0.00 0.00 2.44
622 626 5.946972 TCCGGTTTATAAGGCTCAATTCAAA 59.053 36.000 0.00 0.00 0.00 2.69
623 627 5.502079 TCCGGTTTATAAGGCTCAATTCAA 58.498 37.500 0.00 0.00 0.00 2.69
624 628 5.105567 TCCGGTTTATAAGGCTCAATTCA 57.894 39.130 0.00 0.00 0.00 2.57
625 629 6.445357 TTTCCGGTTTATAAGGCTCAATTC 57.555 37.500 0.00 0.00 0.00 2.17
626 630 5.359860 CCTTTCCGGTTTATAAGGCTCAATT 59.640 40.000 0.00 0.00 31.59 2.32
627 631 4.887655 CCTTTCCGGTTTATAAGGCTCAAT 59.112 41.667 0.00 0.00 31.59 2.57
628 632 4.019141 TCCTTTCCGGTTTATAAGGCTCAA 60.019 41.667 0.00 0.00 37.62 3.02
629 633 3.520317 TCCTTTCCGGTTTATAAGGCTCA 59.480 43.478 0.00 0.00 37.62 4.26
630 634 4.127907 CTCCTTTCCGGTTTATAAGGCTC 58.872 47.826 0.00 0.00 37.62 4.70
631 635 3.118000 CCTCCTTTCCGGTTTATAAGGCT 60.118 47.826 0.00 0.00 37.62 4.58
632 636 3.211865 CCTCCTTTCCGGTTTATAAGGC 58.788 50.000 0.00 0.00 37.62 4.35
633 637 3.457012 TCCCTCCTTTCCGGTTTATAAGG 59.543 47.826 0.00 8.36 38.78 2.69
634 638 4.163649 ACTCCCTCCTTTCCGGTTTATAAG 59.836 45.833 0.00 0.00 0.00 1.73
635 639 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
636 640 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
637 641 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
638 642 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
639 643 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
640 644 2.034436 TTACTCCCTCCTTTCCGGTT 57.966 50.000 0.00 0.00 0.00 4.44
641 645 2.265526 ATTACTCCCTCCTTTCCGGT 57.734 50.000 0.00 0.00 0.00 5.28
642 646 4.347000 TGATTATTACTCCCTCCTTTCCGG 59.653 45.833 0.00 0.00 0.00 5.14
643 647 5.546621 TGATTATTACTCCCTCCTTTCCG 57.453 43.478 0.00 0.00 0.00 4.30
644 648 7.290813 ACAATGATTATTACTCCCTCCTTTCC 58.709 38.462 0.00 0.00 0.00 3.13
645 649 7.445707 GGACAATGATTATTACTCCCTCCTTTC 59.554 40.741 0.00 0.00 0.00 2.62
646 650 7.129504 AGGACAATGATTATTACTCCCTCCTTT 59.870 37.037 0.00 0.00 0.00 3.11
647 651 6.621514 AGGACAATGATTATTACTCCCTCCTT 59.378 38.462 0.00 0.00 0.00 3.36
648 652 6.153924 AGGACAATGATTATTACTCCCTCCT 58.846 40.000 0.00 0.00 0.00 3.69
649 653 6.441088 AGGACAATGATTATTACTCCCTCC 57.559 41.667 0.00 0.00 0.00 4.30
650 654 6.043243 TGGAGGACAATGATTATTACTCCCTC 59.957 42.308 17.60 13.43 38.64 4.30
651 655 5.911178 TGGAGGACAATGATTATTACTCCCT 59.089 40.000 17.60 7.82 38.64 4.20
652 656 6.187727 TGGAGGACAATGATTATTACTCCC 57.812 41.667 17.60 4.37 38.64 4.30
653 657 6.202954 CGTTGGAGGACAATGATTATTACTCC 59.797 42.308 15.28 15.28 46.77 3.85
654 658 6.761714 ACGTTGGAGGACAATGATTATTACTC 59.238 38.462 6.32 0.00 46.77 2.59
655 659 6.650120 ACGTTGGAGGACAATGATTATTACT 58.350 36.000 6.32 0.00 46.77 2.24
656 660 6.920569 ACGTTGGAGGACAATGATTATTAC 57.079 37.500 6.32 0.00 46.77 1.89
657 661 7.225931 GCTAACGTTGGAGGACAATGATTATTA 59.774 37.037 16.60 0.00 46.77 0.98
658 662 6.038271 GCTAACGTTGGAGGACAATGATTATT 59.962 38.462 16.60 0.00 46.77 1.40
659 663 5.527582 GCTAACGTTGGAGGACAATGATTAT 59.472 40.000 16.60 0.00 46.77 1.28
660 664 4.873827 GCTAACGTTGGAGGACAATGATTA 59.126 41.667 16.60 1.94 46.77 1.75
661 665 3.689649 GCTAACGTTGGAGGACAATGATT 59.310 43.478 16.60 1.02 46.77 2.57
914 922 5.675538 AGAGTGGTACTGGATTAAAGCATC 58.324 41.667 0.00 0.00 0.00 3.91
1060 1108 2.433970 GAGGAGCAAGTGATAGGAGCTT 59.566 50.000 0.00 0.00 35.36 3.74
1175 1223 3.074390 TGTGATGGTGGTCTTTGGATCTT 59.926 43.478 0.00 0.00 0.00 2.40
1210 1258 2.294233 TGCTCTTCTTGGTGTGATTTGC 59.706 45.455 0.00 0.00 0.00 3.68
1369 1420 1.476085 CTCTGTGGATCTTGAGAGCGT 59.524 52.381 0.00 0.00 0.00 5.07
1550 1601 0.598158 CTGTGGTGTGTGCAAATGGC 60.598 55.000 0.00 0.00 45.13 4.40
1708 1759 0.537188 GAAGCCATCGAAGGTCAGGA 59.463 55.000 8.72 0.00 0.00 3.86
1793 1847 1.686052 GGTGATGCTTGTTGGACCAAA 59.314 47.619 8.94 0.00 0.00 3.28
1878 1932 3.423154 GTTCTCGGCAGCAACGGG 61.423 66.667 0.00 0.00 0.00 5.28
1985 2039 2.745037 GTGGCCAGGTTCACGGTA 59.255 61.111 5.11 0.00 0.00 4.02
2137 2191 2.403252 AGCTTACCATGGAAAGGACG 57.597 50.000 21.47 0.24 0.00 4.79
2162 2216 0.608035 TTTAGTTTGGGGCCTCGCTG 60.608 55.000 0.84 0.00 0.00 5.18
2165 2219 4.632538 CTTAATTTAGTTTGGGGCCTCG 57.367 45.455 0.84 0.00 0.00 4.63
2415 2479 9.053472 TGAAGTGTTAATTCTCCCCTAAGATAA 57.947 33.333 0.00 0.00 0.00 1.75
2460 2524 9.468532 GAGCATTAATTTCCATTATTTGAGGAC 57.531 33.333 0.00 0.00 0.00 3.85
2461 2525 8.641541 GGAGCATTAATTTCCATTATTTGAGGA 58.358 33.333 9.81 0.00 0.00 3.71
2482 2700 6.359804 AGTATTTGCAATCTGAATAGGAGCA 58.640 36.000 0.00 0.00 0.00 4.26
2612 2867 4.214758 TCGTTCTGTGACGAGATTCTACAA 59.785 41.667 0.00 0.00 46.09 2.41
2629 2884 7.673180 ACATAGAGTAGATAGCTAGTCGTTCT 58.327 38.462 15.39 0.00 46.90 3.01
2640 2895 5.414454 GTCCCTGCAGACATAGAGTAGATAG 59.586 48.000 17.39 0.00 36.73 2.08
2643 2898 3.556999 GTCCCTGCAGACATAGAGTAGA 58.443 50.000 17.39 0.00 36.73 2.59
2644 2899 2.625790 GGTCCCTGCAGACATAGAGTAG 59.374 54.545 17.39 0.00 38.59 2.57
2645 2900 2.667470 GGTCCCTGCAGACATAGAGTA 58.333 52.381 17.39 0.00 38.59 2.59
2646 2901 1.490574 GGTCCCTGCAGACATAGAGT 58.509 55.000 17.39 0.00 38.59 3.24
2647 2902 0.387202 CGGTCCCTGCAGACATAGAG 59.613 60.000 17.39 0.00 38.59 2.43
2779 3034 9.129209 GGTAAAGTCATAGCAAAAACAGAAATC 57.871 33.333 0.00 0.00 0.00 2.17
2825 3080 1.816835 AGCTAGTTGTTCGATCGGTGA 59.183 47.619 16.41 0.00 0.00 4.02
2829 3084 3.341857 AGCTAGCTAGTTGTTCGATCG 57.658 47.619 17.69 9.36 0.00 3.69
2830 3085 4.276431 ACCTAGCTAGCTAGTTGTTCGATC 59.724 45.833 37.50 2.10 43.22 3.69
2831 3086 4.208746 ACCTAGCTAGCTAGTTGTTCGAT 58.791 43.478 37.50 17.32 43.22 3.59
2832 3087 3.618351 ACCTAGCTAGCTAGTTGTTCGA 58.382 45.455 37.50 13.31 43.22 3.71
2929 3184 2.754012 AGATCTCTAGCTGAGTGCCT 57.246 50.000 0.00 0.00 44.23 4.75
2953 3208 9.229784 TCGAGAAATTTACATGAATCGTAGTAC 57.770 33.333 0.00 0.00 0.00 2.73
2954 3209 9.229784 GTCGAGAAATTTACATGAATCGTAGTA 57.770 33.333 0.00 0.00 0.00 1.82
2955 3210 7.974501 AGTCGAGAAATTTACATGAATCGTAGT 59.025 33.333 0.00 0.00 0.00 2.73
2959 3214 9.409949 GTAAAGTCGAGAAATTTACATGAATCG 57.590 33.333 0.00 0.00 38.61 3.34
2968 3223 6.421501 TCGTTGCAGTAAAGTCGAGAAATTTA 59.578 34.615 0.00 0.00 0.00 1.40
3008 3270 2.356665 TGTTTGGGCTCAAAGTGCTA 57.643 45.000 13.23 0.00 42.78 3.49
3009 3271 1.708341 ATGTTTGGGCTCAAAGTGCT 58.292 45.000 13.23 0.00 42.78 4.40
3010 3272 3.255642 TCTTATGTTTGGGCTCAAAGTGC 59.744 43.478 13.23 1.09 42.78 4.40
3011 3273 5.649782 ATCTTATGTTTGGGCTCAAAGTG 57.350 39.130 13.23 1.38 42.78 3.16
3012 3274 6.485171 AGTATCTTATGTTTGGGCTCAAAGT 58.515 36.000 13.23 7.06 42.78 2.66
3013 3275 7.012421 GGTAGTATCTTATGTTTGGGCTCAAAG 59.988 40.741 13.23 0.00 42.78 2.77
3041 3303 4.085733 CCTCTAGGCTCTATGCATGTACT 58.914 47.826 10.16 3.12 45.15 2.73
3042 3304 4.082845 TCCTCTAGGCTCTATGCATGTAC 58.917 47.826 10.16 0.00 45.15 2.90
3043 3305 4.339748 CTCCTCTAGGCTCTATGCATGTA 58.660 47.826 10.16 0.00 45.15 2.29
3044 3306 3.164268 CTCCTCTAGGCTCTATGCATGT 58.836 50.000 10.16 0.00 45.15 3.21
3096 3358 0.460109 AAGCATGCATACGCGTCAGA 60.460 50.000 18.63 0.00 42.97 3.27
3160 3433 1.146358 CTCGTACTGCCCGCTTAAGC 61.146 60.000 17.83 17.83 37.78 3.09
3166 3439 4.208686 CCTCCTCGTACTGCCCGC 62.209 72.222 0.00 0.00 0.00 6.13
3167 3440 2.754658 ACCTCCTCGTACTGCCCG 60.755 66.667 0.00 0.00 0.00 6.13
3186 3459 0.692476 TGAACCTGATCACACCTGGG 59.308 55.000 0.00 0.00 0.00 4.45
3342 3615 4.232091 GGAGAACCAATATACTCCCTCCA 58.768 47.826 0.00 0.00 41.89 3.86
3364 3637 5.210715 ACTCTACTCGAACAAAACTACGTG 58.789 41.667 0.00 0.00 0.00 4.49
3373 3646 5.619309 CGATCCTGAAACTCTACTCGAACAA 60.619 44.000 0.00 0.00 0.00 2.83
3377 3650 2.355132 GCGATCCTGAAACTCTACTCGA 59.645 50.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.