Multiple sequence alignment - TraesCS5D01G517700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G517700 chr5D 100.000 4373 0 0 1 4373 539476619 539480991 0.000000e+00 8076.0
1 TraesCS5D01G517700 chr4A 93.670 3665 160 41 756 4373 628928312 628924673 0.000000e+00 5417.0
2 TraesCS5D01G517700 chr5B 94.708 3250 110 19 756 3966 681130496 681133722 0.000000e+00 4992.0
3 TraesCS5D01G517700 chr5B 81.073 354 23 21 4023 4373 681133712 681134024 4.370000e-60 243.0
4 TraesCS5D01G517700 chr7B 84.898 735 80 8 1185 1911 744143038 744142327 0.000000e+00 713.0
5 TraesCS5D01G517700 chr7B 82.202 545 62 19 3519 4050 744141602 744141080 1.870000e-118 436.0
6 TraesCS5D01G517700 chr7B 82.958 311 42 8 9 312 716479168 716479474 2.000000e-68 270.0
7 TraesCS5D01G517700 chr7B 93.421 152 10 0 2119 2270 744141750 744141599 4.400000e-55 226.0
8 TraesCS5D01G517700 chr2D 78.925 949 131 42 3457 4366 22505524 22506442 8.150000e-162 580.0
9 TraesCS5D01G517700 chr2D 88.189 381 21 8 2602 2982 22504769 22505125 2.420000e-117 433.0
10 TraesCS5D01G517700 chr1D 97.419 310 8 0 3 312 7285941 7286250 3.000000e-146 529.0
11 TraesCS5D01G517700 chr2B 94.322 317 16 1 2593 2907 39196897 39197213 6.580000e-133 484.0
12 TraesCS5D01G517700 chr7D 85.897 312 34 9 9 312 570299940 570299631 1.520000e-84 324.0
13 TraesCS5D01G517700 chr7A 84.953 319 39 8 9 319 645315478 645315795 9.130000e-82 315.0
14 TraesCS5D01G517700 chr7A 85.256 312 37 7 9 312 578184200 578184510 3.280000e-81 313.0
15 TraesCS5D01G517700 chr7A 83.117 308 44 6 9 310 719749323 719749018 1.550000e-69 274.0
16 TraesCS5D01G517700 chr7A 82.353 323 46 9 9 323 730063655 730063974 2.000000e-68 270.0
17 TraesCS5D01G517700 chr2A 85.424 295 33 9 25 312 34487862 34487571 9.190000e-77 298.0
18 TraesCS5D01G517700 chr1B 83.828 303 42 6 16 312 78202913 78202612 9.260000e-72 281.0
19 TraesCS5D01G517700 chr3B 92.222 180 14 0 3210 3389 826703063 826702884 5.610000e-64 255.0
20 TraesCS5D01G517700 chr3B 89.500 200 20 1 3195 3394 826659025 826658827 7.260000e-63 252.0
21 TraesCS5D01G517700 chr3B 83.621 116 11 2 4123 4230 822807174 822807289 7.740000e-18 102.0
22 TraesCS5D01G517700 chr3B 76.190 210 32 9 4142 4341 826658128 826657927 1.290000e-15 95.3
23 TraesCS5D01G517700 chr3B 85.714 77 11 0 3378 3454 804851671 804851747 1.010000e-11 82.4
24 TraesCS5D01G517700 chr3D 90.164 183 17 1 3195 3377 612300983 612301164 2.030000e-58 237.0
25 TraesCS5D01G517700 chr3D 76.829 246 35 12 4094 4325 612301850 612302087 7.680000e-23 119.0
26 TraesCS5D01G517700 chr3A 84.431 167 21 3 315 480 749572931 749572769 4.530000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G517700 chr5D 539476619 539480991 4372 False 8076.000000 8076 100.000000 1 4373 1 chr5D.!!$F1 4372
1 TraesCS5D01G517700 chr4A 628924673 628928312 3639 True 5417.000000 5417 93.670000 756 4373 1 chr4A.!!$R1 3617
2 TraesCS5D01G517700 chr5B 681130496 681134024 3528 False 2617.500000 4992 87.890500 756 4373 2 chr5B.!!$F1 3617
3 TraesCS5D01G517700 chr7B 744141080 744143038 1958 True 458.333333 713 86.840333 1185 4050 3 chr7B.!!$R1 2865
4 TraesCS5D01G517700 chr2D 22504769 22506442 1673 False 506.500000 580 83.557000 2602 4366 2 chr2D.!!$F1 1764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.107410 AACACGGTGCCTTGACAAGA 60.107 50.000 16.99 0.0 0.00 3.02 F
440 441 0.183492 AGTTGTGCTTTGCAGGGAGA 59.817 50.000 0.00 0.0 40.08 3.71 F
1446 1490 1.007271 CGACCTCTTCGTGTGCACT 60.007 57.895 19.41 0.0 43.24 4.40 F
1839 1890 1.152398 GGCCATGCCCATGAGGAAT 60.152 57.895 9.73 0.0 44.06 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1490 0.033503 TGTAGAGGTCGATGAGGGCA 60.034 55.0 0.00 0.0 0.00 5.36 R
1839 1890 0.323302 TGGCGCTCCAAGTAACATCA 59.677 50.0 7.64 0.0 39.99 3.07 R
2901 3321 0.807667 CTGCCTCGTCAAATCTCCCG 60.808 60.0 0.00 0.0 0.00 5.14 R
3680 4434 0.886490 AGAGAAAGCACCAACGCCAG 60.886 55.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.194972 TCAATTTGTTGAAGGCATTATATACCA 57.805 29.630 0.00 0.00 0.00 3.25
40 41 9.814899 CAATTTGTTGAAGGCATTATATACCAA 57.185 29.630 0.00 0.00 0.00 3.67
42 43 8.815565 TTTGTTGAAGGCATTATATACCAAGA 57.184 30.769 0.00 0.00 0.00 3.02
43 44 8.995027 TTGTTGAAGGCATTATATACCAAGAT 57.005 30.769 0.00 0.00 0.00 2.40
44 45 8.995027 TGTTGAAGGCATTATATACCAAGATT 57.005 30.769 0.00 0.00 0.00 2.40
49 50 9.103861 GAAGGCATTATATACCAAGATTAGAGC 57.896 37.037 0.00 0.00 0.00 4.09
50 51 8.386012 AGGCATTATATACCAAGATTAGAGCT 57.614 34.615 0.00 0.00 0.00 4.09
51 52 8.263640 AGGCATTATATACCAAGATTAGAGCTG 58.736 37.037 0.00 0.00 0.00 4.24
52 53 8.260818 GGCATTATATACCAAGATTAGAGCTGA 58.739 37.037 0.00 0.00 0.00 4.26
53 54 9.829507 GCATTATATACCAAGATTAGAGCTGAT 57.170 33.333 0.00 0.00 0.00 2.90
87 88 6.983474 TTTATCTGCATCGAGAACATTTGA 57.017 33.333 0.00 0.00 0.00 2.69
88 89 6.594284 TTATCTGCATCGAGAACATTTGAG 57.406 37.500 0.00 0.00 0.00 3.02
89 90 3.930336 TCTGCATCGAGAACATTTGAGT 58.070 40.909 0.00 0.00 0.00 3.41
90 91 5.072040 TCTGCATCGAGAACATTTGAGTA 57.928 39.130 0.00 0.00 0.00 2.59
91 92 5.664457 TCTGCATCGAGAACATTTGAGTAT 58.336 37.500 0.00 0.00 0.00 2.12
92 93 6.805713 TCTGCATCGAGAACATTTGAGTATA 58.194 36.000 0.00 0.00 0.00 1.47
93 94 7.436933 TCTGCATCGAGAACATTTGAGTATAT 58.563 34.615 0.00 0.00 0.00 0.86
94 95 7.596621 TCTGCATCGAGAACATTTGAGTATATC 59.403 37.037 0.00 0.00 0.00 1.63
95 96 6.646653 TGCATCGAGAACATTTGAGTATATCC 59.353 38.462 0.00 0.00 0.00 2.59
96 97 6.646653 GCATCGAGAACATTTGAGTATATCCA 59.353 38.462 0.00 0.00 0.00 3.41
97 98 7.332926 GCATCGAGAACATTTGAGTATATCCAT 59.667 37.037 0.00 0.00 0.00 3.41
98 99 8.867935 CATCGAGAACATTTGAGTATATCCATC 58.132 37.037 0.00 0.00 0.00 3.51
99 100 7.951591 TCGAGAACATTTGAGTATATCCATCA 58.048 34.615 0.00 0.00 0.00 3.07
100 101 8.588472 TCGAGAACATTTGAGTATATCCATCAT 58.412 33.333 0.00 0.00 0.00 2.45
101 102 9.212641 CGAGAACATTTGAGTATATCCATCATT 57.787 33.333 0.00 0.00 0.00 2.57
179 180 9.706691 ATTAAACATATATGGTCGTAGGACAAG 57.293 33.333 16.96 0.00 45.28 3.16
180 181 6.971726 AACATATATGGTCGTAGGACAAGA 57.028 37.500 16.96 3.78 45.28 3.02
181 182 7.540474 AACATATATGGTCGTAGGACAAGAT 57.460 36.000 16.96 11.04 45.28 2.40
182 183 8.645814 AACATATATGGTCGTAGGACAAGATA 57.354 34.615 16.96 12.79 45.28 1.98
183 184 8.282455 ACATATATGGTCGTAGGACAAGATAG 57.718 38.462 16.96 9.20 45.28 2.08
184 185 8.107729 ACATATATGGTCGTAGGACAAGATAGA 58.892 37.037 16.96 7.75 45.28 1.98
185 186 8.957466 CATATATGGTCGTAGGACAAGATAGAA 58.043 37.037 16.80 0.00 45.28 2.10
186 187 9.702253 ATATATGGTCGTAGGACAAGATAGAAT 57.298 33.333 16.80 0.00 45.28 2.40
187 188 6.732896 ATGGTCGTAGGACAAGATAGAATT 57.267 37.500 16.80 0.00 45.28 2.17
188 189 5.902681 TGGTCGTAGGACAAGATAGAATTG 58.097 41.667 16.80 0.00 45.28 2.32
189 190 5.421056 TGGTCGTAGGACAAGATAGAATTGT 59.579 40.000 16.80 0.00 45.28 2.71
190 191 6.070995 TGGTCGTAGGACAAGATAGAATTGTT 60.071 38.462 16.80 0.00 45.28 2.83
191 192 6.476053 GGTCGTAGGACAAGATAGAATTGTTC 59.524 42.308 16.80 0.00 45.28 3.18
192 193 6.476053 GTCGTAGGACAAGATAGAATTGTTCC 59.524 42.308 10.63 0.00 40.86 3.62
193 194 6.153851 TCGTAGGACAAGATAGAATTGTTCCA 59.846 38.462 0.00 0.00 40.86 3.53
194 195 6.816640 CGTAGGACAAGATAGAATTGTTCCAA 59.183 38.462 0.00 0.00 40.86 3.53
195 196 7.495934 CGTAGGACAAGATAGAATTGTTCCAAT 59.504 37.037 0.00 0.00 40.86 3.16
196 197 9.832445 GTAGGACAAGATAGAATTGTTCCAATA 57.168 33.333 0.00 0.00 40.86 1.90
197 198 8.970859 AGGACAAGATAGAATTGTTCCAATAG 57.029 34.615 0.00 0.00 40.86 1.73
198 199 7.995488 AGGACAAGATAGAATTGTTCCAATAGG 59.005 37.037 0.00 0.00 40.86 2.57
199 200 7.993183 GGACAAGATAGAATTGTTCCAATAGGA 59.007 37.037 0.00 0.00 40.86 2.94
216 217 9.728100 TCCAATAGGAATTTGGGAATTCTTAAT 57.272 29.630 5.23 0.51 46.68 1.40
221 222 8.685257 AGGAATTTGGGAATTCTTAATTTCCT 57.315 30.769 25.39 25.39 45.34 3.36
222 223 9.782900 AGGAATTTGGGAATTCTTAATTTCCTA 57.217 29.630 27.27 10.18 45.34 2.94
227 228 8.589701 TTGGGAATTCTTAATTTCCTAACTCC 57.410 34.615 5.23 0.00 45.34 3.85
228 229 7.123383 TGGGAATTCTTAATTTCCTAACTCCC 58.877 38.462 5.23 0.00 45.34 4.30
229 230 7.123383 GGGAATTCTTAATTTCCTAACTCCCA 58.877 38.462 5.23 0.00 42.37 4.37
230 231 7.285629 GGGAATTCTTAATTTCCTAACTCCCAG 59.714 40.741 5.23 0.00 42.37 4.45
231 232 7.834681 GGAATTCTTAATTTCCTAACTCCCAGT 59.165 37.037 5.23 0.00 0.00 4.00
232 233 9.901172 GAATTCTTAATTTCCTAACTCCCAGTA 57.099 33.333 0.00 0.00 0.00 2.74
236 237 9.681062 TCTTAATTTCCTAACTCCCAGTAAATG 57.319 33.333 0.00 0.00 0.00 2.32
237 238 9.681062 CTTAATTTCCTAACTCCCAGTAAATGA 57.319 33.333 0.00 0.00 0.00 2.57
239 240 8.950007 AATTTCCTAACTCCCAGTAAATGAAA 57.050 30.769 0.00 0.00 0.00 2.69
240 241 7.754851 TTTCCTAACTCCCAGTAAATGAAAC 57.245 36.000 0.00 0.00 0.00 2.78
241 242 5.484715 TCCTAACTCCCAGTAAATGAAACG 58.515 41.667 0.00 0.00 0.00 3.60
242 243 5.012354 TCCTAACTCCCAGTAAATGAAACGT 59.988 40.000 0.00 0.00 0.00 3.99
243 244 6.211184 TCCTAACTCCCAGTAAATGAAACGTA 59.789 38.462 0.00 0.00 0.00 3.57
244 245 6.534079 CCTAACTCCCAGTAAATGAAACGTAG 59.466 42.308 0.00 0.00 0.00 3.51
246 247 5.476614 ACTCCCAGTAAATGAAACGTAGTC 58.523 41.667 0.00 0.00 45.00 2.59
247 248 5.245526 ACTCCCAGTAAATGAAACGTAGTCT 59.754 40.000 0.00 0.00 45.00 3.24
248 249 5.717119 TCCCAGTAAATGAAACGTAGTCTC 58.283 41.667 0.00 0.00 45.00 3.36
249 250 4.868734 CCCAGTAAATGAAACGTAGTCTCC 59.131 45.833 0.00 0.00 45.00 3.71
250 251 5.475719 CCAGTAAATGAAACGTAGTCTCCA 58.524 41.667 0.00 0.00 45.00 3.86
251 252 5.929992 CCAGTAAATGAAACGTAGTCTCCAA 59.070 40.000 0.00 0.00 45.00 3.53
252 253 6.425721 CCAGTAAATGAAACGTAGTCTCCAAA 59.574 38.462 0.00 0.00 45.00 3.28
253 254 7.041644 CCAGTAAATGAAACGTAGTCTCCAAAA 60.042 37.037 0.00 0.00 45.00 2.44
254 255 8.504005 CAGTAAATGAAACGTAGTCTCCAAAAT 58.496 33.333 0.00 0.00 45.00 1.82
255 256 9.063615 AGTAAATGAAACGTAGTCTCCAAAATT 57.936 29.630 0.00 0.00 45.00 1.82
256 257 9.326339 GTAAATGAAACGTAGTCTCCAAAATTC 57.674 33.333 0.00 0.00 45.00 2.17
257 258 7.504924 AATGAAACGTAGTCTCCAAAATTCA 57.495 32.000 0.00 0.00 45.00 2.57
258 259 7.687941 ATGAAACGTAGTCTCCAAAATTCAT 57.312 32.000 0.00 0.00 45.00 2.57
259 260 7.129109 TGAAACGTAGTCTCCAAAATTCATC 57.871 36.000 0.00 0.00 45.00 2.92
260 261 6.148811 TGAAACGTAGTCTCCAAAATTCATCC 59.851 38.462 0.00 0.00 45.00 3.51
261 262 4.514401 ACGTAGTCTCCAAAATTCATCCC 58.486 43.478 0.00 0.00 29.74 3.85
262 263 4.019681 ACGTAGTCTCCAAAATTCATCCCA 60.020 41.667 0.00 0.00 29.74 4.37
263 264 5.126067 CGTAGTCTCCAAAATTCATCCCAT 58.874 41.667 0.00 0.00 0.00 4.00
264 265 5.590259 CGTAGTCTCCAAAATTCATCCCATT 59.410 40.000 0.00 0.00 0.00 3.16
265 266 6.765989 CGTAGTCTCCAAAATTCATCCCATTA 59.234 38.462 0.00 0.00 0.00 1.90
266 267 7.445402 CGTAGTCTCCAAAATTCATCCCATTAT 59.555 37.037 0.00 0.00 0.00 1.28
267 268 9.793259 GTAGTCTCCAAAATTCATCCCATTATA 57.207 33.333 0.00 0.00 0.00 0.98
268 269 8.930846 AGTCTCCAAAATTCATCCCATTATAG 57.069 34.615 0.00 0.00 0.00 1.31
269 270 7.946776 AGTCTCCAAAATTCATCCCATTATAGG 59.053 37.037 0.00 0.00 0.00 2.57
270 271 7.725844 GTCTCCAAAATTCATCCCATTATAGGT 59.274 37.037 0.00 0.00 0.00 3.08
271 272 8.288812 TCTCCAAAATTCATCCCATTATAGGTT 58.711 33.333 0.00 0.00 0.00 3.50
272 273 9.586732 CTCCAAAATTCATCCCATTATAGGTTA 57.413 33.333 0.00 0.00 0.00 2.85
273 274 9.362151 TCCAAAATTCATCCCATTATAGGTTAC 57.638 33.333 0.00 0.00 0.00 2.50
274 275 9.367160 CCAAAATTCATCCCATTATAGGTTACT 57.633 33.333 0.00 0.00 0.00 2.24
282 283 9.654663 CATCCCATTATAGGTTACTAAACTAGC 57.345 37.037 0.24 0.00 35.81 3.42
283 284 8.198807 TCCCATTATAGGTTACTAAACTAGCC 57.801 38.462 0.24 0.00 35.81 3.93
284 285 7.236225 TCCCATTATAGGTTACTAAACTAGCCC 59.764 40.741 0.24 0.00 35.81 5.19
285 286 7.095270 CCATTATAGGTTACTAAACTAGCCCG 58.905 42.308 0.24 0.00 35.81 6.13
286 287 7.256083 CCATTATAGGTTACTAAACTAGCCCGT 60.256 40.741 0.24 0.00 35.81 5.28
287 288 3.881937 AGGTTACTAAACTAGCCCGTG 57.118 47.619 0.00 0.00 35.81 4.94
288 289 2.093816 AGGTTACTAAACTAGCCCGTGC 60.094 50.000 0.00 0.00 35.81 5.34
289 290 1.922545 GTTACTAAACTAGCCCGTGCG 59.077 52.381 0.00 0.00 36.15 5.34
290 291 1.462616 TACTAAACTAGCCCGTGCGA 58.537 50.000 0.00 0.00 44.33 5.10
291 292 0.604578 ACTAAACTAGCCCGTGCGAA 59.395 50.000 0.00 0.00 44.33 4.70
292 293 1.206371 ACTAAACTAGCCCGTGCGAAT 59.794 47.619 0.00 0.00 44.33 3.34
293 294 1.593006 CTAAACTAGCCCGTGCGAATG 59.407 52.381 0.00 0.00 44.33 2.67
294 295 1.644786 AAACTAGCCCGTGCGAATGC 61.645 55.000 0.00 0.00 44.33 3.56
304 305 2.175811 GCGAATGCACGGGTTGAC 59.824 61.111 0.00 0.00 42.15 3.18
305 306 2.474266 CGAATGCACGGGTTGACG 59.526 61.111 0.00 0.00 40.31 4.35
306 307 2.024868 CGAATGCACGGGTTGACGA 61.025 57.895 0.00 0.00 37.61 4.20
307 308 1.495951 GAATGCACGGGTTGACGAC 59.504 57.895 0.00 0.00 37.61 4.34
308 309 0.949105 GAATGCACGGGTTGACGACT 60.949 55.000 0.00 0.00 37.61 4.18
309 310 0.319083 AATGCACGGGTTGACGACTA 59.681 50.000 0.00 0.00 37.61 2.59
310 311 0.108804 ATGCACGGGTTGACGACTAG 60.109 55.000 0.00 0.00 37.61 2.57
311 312 1.288127 GCACGGGTTGACGACTAGT 59.712 57.895 0.00 0.00 37.61 2.57
312 313 0.319297 GCACGGGTTGACGACTAGTT 60.319 55.000 0.00 0.00 37.61 2.24
313 314 1.694639 CACGGGTTGACGACTAGTTC 58.305 55.000 0.00 0.00 37.61 3.01
314 315 1.001048 CACGGGTTGACGACTAGTTCA 60.001 52.381 0.00 0.00 37.61 3.18
315 316 1.682854 ACGGGTTGACGACTAGTTCAA 59.317 47.619 5.99 5.99 37.61 2.69
316 317 2.101249 ACGGGTTGACGACTAGTTCAAA 59.899 45.455 10.81 0.00 37.61 2.69
317 318 3.243975 ACGGGTTGACGACTAGTTCAAAT 60.244 43.478 10.81 0.00 37.61 2.32
318 319 4.022068 ACGGGTTGACGACTAGTTCAAATA 60.022 41.667 10.81 0.00 37.61 1.40
319 320 4.925054 CGGGTTGACGACTAGTTCAAATAA 59.075 41.667 10.81 0.00 35.47 1.40
320 321 5.579511 CGGGTTGACGACTAGTTCAAATAAT 59.420 40.000 10.81 0.00 35.47 1.28
321 322 6.091713 CGGGTTGACGACTAGTTCAAATAATT 59.908 38.462 10.81 0.00 35.47 1.40
322 323 7.360607 CGGGTTGACGACTAGTTCAAATAATTT 60.361 37.037 10.81 0.00 35.47 1.82
323 324 7.749126 GGGTTGACGACTAGTTCAAATAATTTG 59.251 37.037 10.81 0.00 41.96 2.32
324 325 7.749126 GGTTGACGACTAGTTCAAATAATTTGG 59.251 37.037 10.81 0.00 40.98 3.28
325 326 8.500773 GTTGACGACTAGTTCAAATAATTTGGA 58.499 33.333 10.81 0.00 40.98 3.53
326 327 8.786826 TGACGACTAGTTCAAATAATTTGGAT 57.213 30.769 0.00 0.00 40.98 3.41
327 328 9.878667 TGACGACTAGTTCAAATAATTTGGATA 57.121 29.630 0.00 0.00 40.98 2.59
332 333 9.950680 ACTAGTTCAAATAATTTGGATAATGCG 57.049 29.630 0.00 0.00 40.98 4.73
333 334 9.398170 CTAGTTCAAATAATTTGGATAATGCGG 57.602 33.333 0.00 0.00 40.98 5.69
334 335 8.006298 AGTTCAAATAATTTGGATAATGCGGA 57.994 30.769 0.00 0.00 40.98 5.54
335 336 8.641541 AGTTCAAATAATTTGGATAATGCGGAT 58.358 29.630 0.00 0.00 40.98 4.18
336 337 9.260002 GTTCAAATAATTTGGATAATGCGGATT 57.740 29.630 7.49 7.49 40.98 3.01
341 342 9.691362 AATAATTTGGATAATGCGGATTAACAC 57.309 29.630 13.61 7.42 0.00 3.32
342 343 4.804608 TTGGATAATGCGGATTAACACG 57.195 40.909 13.61 0.00 0.00 4.49
343 344 3.135225 TGGATAATGCGGATTAACACGG 58.865 45.455 13.61 0.00 0.00 4.94
344 345 3.135994 GGATAATGCGGATTAACACGGT 58.864 45.455 13.61 0.00 0.00 4.83
345 346 3.059188 GGATAATGCGGATTAACACGGTG 60.059 47.826 13.61 6.58 0.00 4.94
346 347 0.450184 AATGCGGATTAACACGGTGC 59.550 50.000 8.30 0.00 0.00 5.01
347 348 1.373590 ATGCGGATTAACACGGTGCC 61.374 55.000 8.30 0.00 0.00 5.01
348 349 1.743995 GCGGATTAACACGGTGCCT 60.744 57.895 8.30 0.00 0.00 4.75
349 350 1.303091 GCGGATTAACACGGTGCCTT 61.303 55.000 8.30 0.00 0.00 4.35
350 351 0.446222 CGGATTAACACGGTGCCTTG 59.554 55.000 8.30 0.00 0.00 3.61
351 352 1.816074 GGATTAACACGGTGCCTTGA 58.184 50.000 8.30 0.00 0.00 3.02
352 353 1.467342 GGATTAACACGGTGCCTTGAC 59.533 52.381 8.30 0.00 0.00 3.18
353 354 2.147958 GATTAACACGGTGCCTTGACA 58.852 47.619 8.30 0.00 0.00 3.58
354 355 2.039818 TTAACACGGTGCCTTGACAA 57.960 45.000 8.30 0.00 0.00 3.18
355 356 1.588674 TAACACGGTGCCTTGACAAG 58.411 50.000 8.30 8.31 0.00 3.16
356 357 0.107410 AACACGGTGCCTTGACAAGA 60.107 50.000 16.99 0.00 0.00 3.02
357 358 0.814010 ACACGGTGCCTTGACAAGAC 60.814 55.000 16.99 5.58 0.00 3.01
358 359 1.227853 ACGGTGCCTTGACAAGACC 60.228 57.895 16.99 15.06 0.00 3.85
359 360 1.227823 CGGTGCCTTGACAAGACCA 60.228 57.895 20.35 13.15 0.00 4.02
360 361 0.817634 CGGTGCCTTGACAAGACCAA 60.818 55.000 20.35 2.18 0.00 3.67
361 362 0.954452 GGTGCCTTGACAAGACCAAG 59.046 55.000 16.99 0.49 40.37 3.61
362 363 1.680338 GTGCCTTGACAAGACCAAGT 58.320 50.000 16.99 0.00 39.36 3.16
363 364 2.486548 GGTGCCTTGACAAGACCAAGTA 60.487 50.000 16.99 0.00 39.36 2.24
364 365 3.412386 GTGCCTTGACAAGACCAAGTAT 58.588 45.455 16.99 0.00 39.36 2.12
365 366 3.821033 GTGCCTTGACAAGACCAAGTATT 59.179 43.478 16.99 0.00 39.36 1.89
368 369 4.320494 GCCTTGACAAGACCAAGTATTGTG 60.320 45.833 16.99 0.23 45.91 3.33
369 370 4.216257 CCTTGACAAGACCAAGTATTGTGG 59.784 45.833 16.99 4.48 45.91 4.17
381 382 7.915293 CCAAGTATTGTGGTTATGTAACAGA 57.085 36.000 5.38 0.00 46.99 3.41
382 383 8.506168 CCAAGTATTGTGGTTATGTAACAGAT 57.494 34.615 5.38 0.00 46.99 2.90
383 384 9.607988 CCAAGTATTGTGGTTATGTAACAGATA 57.392 33.333 5.38 0.00 46.99 1.98
409 410 9.069082 AGATAGATTTCTAGTACATGCTTACGT 57.931 33.333 0.00 0.00 0.00 3.57
410 411 9.332301 GATAGATTTCTAGTACATGCTTACGTC 57.668 37.037 0.00 0.00 0.00 4.34
411 412 6.200100 AGATTTCTAGTACATGCTTACGTCG 58.800 40.000 0.00 0.00 0.00 5.12
412 413 5.550232 TTTCTAGTACATGCTTACGTCGA 57.450 39.130 0.00 0.00 0.00 4.20
413 414 4.526970 TCTAGTACATGCTTACGTCGAC 57.473 45.455 5.18 5.18 0.00 4.20
414 415 4.186926 TCTAGTACATGCTTACGTCGACT 58.813 43.478 14.70 3.37 0.00 4.18
415 416 3.844577 AGTACATGCTTACGTCGACTT 57.155 42.857 14.70 6.93 0.00 3.01
416 417 3.499048 AGTACATGCTTACGTCGACTTG 58.501 45.455 14.70 0.96 0.00 3.16
417 418 2.433868 ACATGCTTACGTCGACTTGT 57.566 45.000 14.70 7.67 0.00 3.16
418 419 3.564235 ACATGCTTACGTCGACTTGTA 57.436 42.857 14.70 6.60 0.00 2.41
419 420 3.904571 ACATGCTTACGTCGACTTGTAA 58.095 40.909 14.70 13.82 0.00 2.41
420 421 4.300803 ACATGCTTACGTCGACTTGTAAA 58.699 39.130 14.70 2.56 30.75 2.01
421 422 4.746115 ACATGCTTACGTCGACTTGTAAAA 59.254 37.500 14.70 7.28 30.75 1.52
422 423 4.959631 TGCTTACGTCGACTTGTAAAAG 57.040 40.909 14.70 6.00 30.75 2.27
423 424 4.362279 TGCTTACGTCGACTTGTAAAAGT 58.638 39.130 14.70 0.00 35.34 2.66
424 425 4.805192 TGCTTACGTCGACTTGTAAAAGTT 59.195 37.500 14.70 0.00 32.22 2.66
425 426 5.128468 GCTTACGTCGACTTGTAAAAGTTG 58.872 41.667 14.70 6.69 35.87 3.16
426 427 5.276536 GCTTACGTCGACTTGTAAAAGTTGT 60.277 40.000 14.70 6.16 35.98 3.32
427 428 4.509915 ACGTCGACTTGTAAAAGTTGTG 57.490 40.909 14.70 8.98 35.98 3.33
428 429 3.242188 ACGTCGACTTGTAAAAGTTGTGC 60.242 43.478 14.70 6.61 35.98 4.57
429 430 3.000925 CGTCGACTTGTAAAAGTTGTGCT 59.999 43.478 14.70 0.00 35.98 4.40
430 431 4.493545 CGTCGACTTGTAAAAGTTGTGCTT 60.494 41.667 14.70 0.00 39.52 3.91
432 433 5.227184 GTCGACTTGTAAAAGTTGTGCTTTG 59.773 40.000 8.70 0.00 45.91 2.77
433 434 4.027702 CGACTTGTAAAAGTTGTGCTTTGC 60.028 41.667 0.00 0.00 45.91 3.68
434 435 4.815269 ACTTGTAAAAGTTGTGCTTTGCA 58.185 34.783 0.00 0.00 45.91 4.08
435 436 4.864247 ACTTGTAAAAGTTGTGCTTTGCAG 59.136 37.500 0.00 0.00 45.91 4.41
436 437 3.779759 TGTAAAAGTTGTGCTTTGCAGG 58.220 40.909 0.00 0.00 45.91 4.85
437 438 2.314323 AAAAGTTGTGCTTTGCAGGG 57.686 45.000 0.00 0.00 45.91 4.45
438 439 1.484038 AAAGTTGTGCTTTGCAGGGA 58.516 45.000 0.00 0.00 45.00 4.20
439 440 1.035139 AAGTTGTGCTTTGCAGGGAG 58.965 50.000 0.00 0.00 40.08 4.30
440 441 0.183492 AGTTGTGCTTTGCAGGGAGA 59.817 50.000 0.00 0.00 40.08 3.71
441 442 1.202976 AGTTGTGCTTTGCAGGGAGAT 60.203 47.619 0.00 0.00 40.08 2.75
442 443 1.615392 GTTGTGCTTTGCAGGGAGATT 59.385 47.619 0.00 0.00 40.08 2.40
443 444 1.999648 TGTGCTTTGCAGGGAGATTT 58.000 45.000 0.00 0.00 40.08 2.17
444 445 2.318908 TGTGCTTTGCAGGGAGATTTT 58.681 42.857 0.00 0.00 40.08 1.82
445 446 2.699846 TGTGCTTTGCAGGGAGATTTTT 59.300 40.909 0.00 0.00 40.08 1.94
477 478 9.692749 TTTTGCACGGTTTTATATCAAAATACA 57.307 25.926 0.00 0.00 30.16 2.29
478 479 9.862371 TTTGCACGGTTTTATATCAAAATACAT 57.138 25.926 0.00 0.00 0.00 2.29
479 480 9.862371 TTGCACGGTTTTATATCAAAATACATT 57.138 25.926 0.00 0.00 0.00 2.71
480 481 9.509855 TGCACGGTTTTATATCAAAATACATTC 57.490 29.630 0.00 0.00 0.00 2.67
481 482 9.730420 GCACGGTTTTATATCAAAATACATTCT 57.270 29.630 0.00 0.00 0.00 2.40
493 494 8.257830 TCAAAATACATTCTATTACGTGTGCA 57.742 30.769 0.00 0.00 0.00 4.57
494 495 8.387354 TCAAAATACATTCTATTACGTGTGCAG 58.613 33.333 0.00 0.00 0.00 4.41
495 496 6.844696 AATACATTCTATTACGTGTGCAGG 57.155 37.500 0.00 0.00 0.00 4.85
496 497 4.465632 ACATTCTATTACGTGTGCAGGA 57.534 40.909 0.00 0.00 0.00 3.86
497 498 5.023533 ACATTCTATTACGTGTGCAGGAT 57.976 39.130 0.00 0.00 0.00 3.24
498 499 5.428253 ACATTCTATTACGTGTGCAGGATT 58.572 37.500 0.00 0.00 0.00 3.01
499 500 5.880332 ACATTCTATTACGTGTGCAGGATTT 59.120 36.000 0.00 0.00 0.00 2.17
500 501 6.037172 ACATTCTATTACGTGTGCAGGATTTC 59.963 38.462 0.00 0.00 0.00 2.17
501 502 5.079689 TCTATTACGTGTGCAGGATTTCA 57.920 39.130 0.00 0.00 0.00 2.69
502 503 5.483811 TCTATTACGTGTGCAGGATTTCAA 58.516 37.500 0.00 0.00 0.00 2.69
503 504 5.935206 TCTATTACGTGTGCAGGATTTCAAA 59.065 36.000 0.00 0.00 0.00 2.69
504 505 4.902443 TTACGTGTGCAGGATTTCAAAA 57.098 36.364 0.00 0.00 0.00 2.44
505 506 5.446143 TTACGTGTGCAGGATTTCAAAAT 57.554 34.783 0.00 0.00 0.00 1.82
506 507 6.561737 TTACGTGTGCAGGATTTCAAAATA 57.438 33.333 0.00 0.00 0.00 1.40
507 508 5.643379 ACGTGTGCAGGATTTCAAAATAT 57.357 34.783 0.00 0.00 0.00 1.28
508 509 6.024552 ACGTGTGCAGGATTTCAAAATATT 57.975 33.333 0.00 0.00 0.00 1.28
509 510 7.151999 ACGTGTGCAGGATTTCAAAATATTA 57.848 32.000 0.00 0.00 0.00 0.98
510 511 7.598278 ACGTGTGCAGGATTTCAAAATATTAA 58.402 30.769 0.00 0.00 0.00 1.40
511 512 7.540745 ACGTGTGCAGGATTTCAAAATATTAAC 59.459 33.333 0.00 0.00 0.00 2.01
512 513 7.540400 CGTGTGCAGGATTTCAAAATATTAACA 59.460 33.333 0.00 0.00 0.00 2.41
513 514 9.202273 GTGTGCAGGATTTCAAAATATTAACAA 57.798 29.630 0.00 0.00 0.00 2.83
514 515 9.421806 TGTGCAGGATTTCAAAATATTAACAAG 57.578 29.630 0.00 0.00 0.00 3.16
515 516 9.423061 GTGCAGGATTTCAAAATATTAACAAGT 57.577 29.630 0.00 0.00 0.00 3.16
633 634 9.258826 TGTTCCTGAATACAATTGTTTTTCATG 57.741 29.630 24.92 22.72 32.42 3.07
634 635 9.474920 GTTCCTGAATACAATTGTTTTTCATGA 57.525 29.630 24.92 23.91 32.42 3.07
716 717 6.877611 AAAAACTAGCAGAATCTTCCGAAA 57.122 33.333 0.00 0.00 0.00 3.46
717 718 5.864628 AAACTAGCAGAATCTTCCGAAAC 57.135 39.130 0.00 0.00 0.00 2.78
718 719 3.863041 ACTAGCAGAATCTTCCGAAACC 58.137 45.455 0.00 0.00 0.00 3.27
719 720 3.515901 ACTAGCAGAATCTTCCGAAACCT 59.484 43.478 0.00 0.00 0.00 3.50
720 721 3.425162 AGCAGAATCTTCCGAAACCTT 57.575 42.857 0.00 0.00 0.00 3.50
721 722 3.756117 AGCAGAATCTTCCGAAACCTTT 58.244 40.909 0.00 0.00 0.00 3.11
722 723 3.753797 AGCAGAATCTTCCGAAACCTTTC 59.246 43.478 0.00 0.00 0.00 2.62
723 724 3.119814 GCAGAATCTTCCGAAACCTTTCC 60.120 47.826 0.00 0.00 33.68 3.13
724 725 4.072131 CAGAATCTTCCGAAACCTTTCCA 58.928 43.478 0.00 0.00 33.68 3.53
725 726 4.518970 CAGAATCTTCCGAAACCTTTCCAA 59.481 41.667 0.00 0.00 33.68 3.53
726 727 5.009610 CAGAATCTTCCGAAACCTTTCCAAA 59.990 40.000 0.00 0.00 33.68 3.28
727 728 5.596772 AGAATCTTCCGAAACCTTTCCAAAA 59.403 36.000 0.00 0.00 33.68 2.44
728 729 4.642445 TCTTCCGAAACCTTTCCAAAAC 57.358 40.909 0.00 0.00 33.68 2.43
729 730 4.274978 TCTTCCGAAACCTTTCCAAAACT 58.725 39.130 0.00 0.00 33.68 2.66
730 731 4.097286 TCTTCCGAAACCTTTCCAAAACTG 59.903 41.667 0.00 0.00 33.68 3.16
731 732 3.622630 TCCGAAACCTTTCCAAAACTGA 58.377 40.909 0.00 0.00 33.68 3.41
732 733 4.017808 TCCGAAACCTTTCCAAAACTGAA 58.982 39.130 0.00 0.00 33.68 3.02
733 734 4.463186 TCCGAAACCTTTCCAAAACTGAAA 59.537 37.500 0.00 0.00 33.68 2.69
734 735 5.047235 TCCGAAACCTTTCCAAAACTGAAAA 60.047 36.000 0.00 0.00 33.68 2.29
735 736 5.290885 CCGAAACCTTTCCAAAACTGAAAAG 59.709 40.000 0.00 0.00 33.68 2.27
736 737 5.290885 CGAAACCTTTCCAAAACTGAAAAGG 59.709 40.000 10.39 10.39 33.68 3.11
737 738 4.753516 ACCTTTCCAAAACTGAAAAGGG 57.246 40.909 15.09 3.24 31.77 3.95
738 739 4.358214 ACCTTTCCAAAACTGAAAAGGGA 58.642 39.130 15.09 0.00 31.77 4.20
739 740 4.780554 ACCTTTCCAAAACTGAAAAGGGAA 59.219 37.500 15.09 0.00 31.77 3.97
740 741 5.249622 ACCTTTCCAAAACTGAAAAGGGAAA 59.750 36.000 15.09 0.00 40.87 3.13
741 742 5.584649 CCTTTCCAAAACTGAAAAGGGAAAC 59.415 40.000 0.00 0.00 38.94 2.78
742 743 5.746990 TTCCAAAACTGAAAAGGGAAACA 57.253 34.783 0.00 0.00 31.89 2.83
743 744 5.337578 TCCAAAACTGAAAAGGGAAACAG 57.662 39.130 0.00 0.00 36.58 3.16
744 745 3.871006 CCAAAACTGAAAAGGGAAACAGC 59.129 43.478 0.00 0.00 34.25 4.40
745 746 4.502962 CAAAACTGAAAAGGGAAACAGCA 58.497 39.130 0.00 0.00 34.25 4.41
746 747 3.801114 AACTGAAAAGGGAAACAGCAC 57.199 42.857 0.00 0.00 34.25 4.40
747 748 2.733956 ACTGAAAAGGGAAACAGCACA 58.266 42.857 0.00 0.00 34.25 4.57
748 749 2.689983 ACTGAAAAGGGAAACAGCACAG 59.310 45.455 0.00 0.00 34.25 3.66
749 750 2.951642 CTGAAAAGGGAAACAGCACAGA 59.048 45.455 0.00 0.00 0.00 3.41
750 751 3.360867 TGAAAAGGGAAACAGCACAGAA 58.639 40.909 0.00 0.00 0.00 3.02
751 752 3.766591 TGAAAAGGGAAACAGCACAGAAA 59.233 39.130 0.00 0.00 0.00 2.52
752 753 4.221703 TGAAAAGGGAAACAGCACAGAAAA 59.778 37.500 0.00 0.00 0.00 2.29
753 754 3.801114 AAGGGAAACAGCACAGAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
754 755 2.733956 AGGGAAACAGCACAGAAAACA 58.266 42.857 0.00 0.00 0.00 2.83
802 805 3.558418 ACGTGGTGACTTTGTCAATGTAC 59.442 43.478 4.21 4.21 44.49 2.90
803 806 3.558006 CGTGGTGACTTTGTCAATGTACA 59.442 43.478 0.00 0.00 44.49 2.90
807 810 5.065859 TGGTGACTTTGTCAATGTACAGTTG 59.934 40.000 0.33 6.69 44.49 3.16
828 832 7.851387 GTTGAAAACCCCAACATTTTTAAGA 57.149 32.000 0.00 0.00 42.21 2.10
829 833 7.915508 GTTGAAAACCCCAACATTTTTAAGAG 58.084 34.615 0.00 0.00 42.21 2.85
1078 1097 2.364317 CTCCTCCTCCTCCGGCAA 60.364 66.667 0.00 0.00 0.00 4.52
1202 1245 1.736645 ACCTGTTCGACCGAATGCG 60.737 57.895 8.14 0.00 36.45 4.73
1304 1347 4.529219 CTACGCCGCCATGCTCCA 62.529 66.667 0.00 0.00 0.00 3.86
1362 1405 2.654079 CGTCCTCAAGGCCTGCTCT 61.654 63.158 5.69 0.00 34.44 4.09
1446 1490 1.007271 CGACCTCTTCGTGTGCACT 60.007 57.895 19.41 0.00 43.24 4.40
1551 1595 4.393155 TGGAACGCCATGCTCGCT 62.393 61.111 5.65 0.00 39.92 4.93
1575 1619 3.576356 GCGCTGCACGGCATGTAT 61.576 61.111 0.00 0.00 43.93 2.29
1752 1803 2.430367 GACAAGGACGGGGTGCTT 59.570 61.111 0.00 0.00 44.62 3.91
1755 1806 2.923837 AAGGACGGGGTGCTTGTT 59.076 55.556 1.59 0.00 42.31 2.83
1785 1836 1.535028 CTGCTGGACATGTACGCAAAA 59.465 47.619 22.09 6.27 0.00 2.44
1839 1890 1.152398 GGCCATGCCCATGAGGAAT 60.152 57.895 9.73 0.00 44.06 3.01
2031 2223 2.159071 ACAGCTTCATGTTTTGCTTGCA 60.159 40.909 0.00 0.00 33.03 4.08
2190 2610 1.915489 TCAGGGTATGTGCAGAATGGT 59.085 47.619 0.00 0.00 35.86 3.55
2583 3003 4.951715 ACATTCATCTGCCTAATTTCAGCA 59.048 37.500 0.00 0.00 34.79 4.41
2738 3158 5.918608 TGAAGCCTATCAGTTTATCCAGAC 58.081 41.667 0.00 0.00 0.00 3.51
2901 3321 0.029834 CCAACATATTCAGCGCTGCC 59.970 55.000 32.44 0.00 0.00 4.85
2982 3402 1.304713 CCCTGGCTGCAGTTGGATT 60.305 57.895 16.64 0.00 0.00 3.01
3153 3573 2.040412 GGAAGAGGAAAAGGAGAAGGCA 59.960 50.000 0.00 0.00 0.00 4.75
3351 3771 5.188163 TCATCATTTCAAGAATGGGCAATGT 59.812 36.000 0.00 0.00 0.00 2.71
3486 4227 2.629617 CAACAGAATGCCCTTTGAGGTT 59.370 45.455 0.00 0.00 42.53 3.50
3604 4348 6.610075 AGGTGCTATTCCAAATGAAACAAT 57.390 33.333 0.00 0.00 36.33 2.71
3653 4407 9.525826 AGATCTGATTCTGTAGGTTTCAATTTT 57.474 29.630 0.00 0.00 0.00 1.82
3680 4434 4.232221 CCAAGATGACACTGAATTGTTGC 58.768 43.478 0.00 0.00 0.00 4.17
3697 4451 2.555547 GCTGGCGTTGGTGCTTTCT 61.556 57.895 0.00 0.00 34.52 2.52
3785 4540 6.446318 TGACACAAATAGAACTTGCATTTCC 58.554 36.000 5.22 0.00 0.00 3.13
3828 4583 9.529325 GTACATGCTTAGTATCATCAGTTGTAA 57.471 33.333 0.00 0.00 0.00 2.41
3879 4636 6.916440 TGATGAAATGAAATGGTGTCTCAAG 58.084 36.000 0.00 0.00 0.00 3.02
3880 4637 5.710513 TGAAATGAAATGGTGTCTCAAGG 57.289 39.130 0.00 0.00 0.00 3.61
3910 4667 2.693267 ATTCCTTCGCACTTCCCTAC 57.307 50.000 0.00 0.00 0.00 3.18
3917 4674 1.338136 CGCACTTCCCTACCCTGGAT 61.338 60.000 0.00 0.00 0.00 3.41
3935 4692 6.550854 CCCTGGATATTAGAAAAGGCAATCAA 59.449 38.462 0.00 0.00 0.00 2.57
4043 4805 2.569059 AGCATCATCAGCGCTTAATGT 58.431 42.857 22.44 11.74 37.01 2.71
4070 4832 4.462508 TCTTACTGCAAGAGATCACAGG 57.537 45.455 0.00 0.00 38.39 4.00
4133 4914 2.683362 GGCAGCCCAACTAACTATGAAC 59.317 50.000 0.00 0.00 0.00 3.18
4171 4952 0.166814 GCGCAACAGGAACAAGCTAG 59.833 55.000 0.30 0.00 0.00 3.42
4204 4992 8.861033 TCTGATATCATTTGTAAAATGCTTGC 57.139 30.769 5.72 0.00 0.00 4.01
4206 4994 7.479150 TGATATCATTTGTAAAATGCTTGCGA 58.521 30.769 0.00 0.00 0.00 5.10
4222 5010 1.746220 TGCGATTTTATTTGTCGGGGG 59.254 47.619 0.00 0.00 36.00 5.40
4240 5028 1.299976 GTAACCAGCTGGGGGTCTG 59.700 63.158 35.42 10.03 42.91 3.51
4241 5029 1.151899 TAACCAGCTGGGGGTCTGT 60.152 57.895 35.42 11.03 42.91 3.41
4242 5030 1.198759 TAACCAGCTGGGGGTCTGTC 61.199 60.000 35.42 0.00 42.91 3.51
4245 5033 1.002868 CAGCTGGGGGTCTGTCTTG 60.003 63.158 5.57 0.00 0.00 3.02
4246 5034 2.227036 AGCTGGGGGTCTGTCTTGG 61.227 63.158 0.00 0.00 0.00 3.61
4247 5035 2.224159 GCTGGGGGTCTGTCTTGGA 61.224 63.158 0.00 0.00 0.00 3.53
4296 5090 8.285891 CCTCTAGTAGATTCCATGGTCCTATAT 58.714 40.741 12.58 7.43 0.00 0.86
4298 5092 9.480861 TCTAGTAGATTCCATGGTCCTATATTG 57.519 37.037 12.58 6.43 0.00 1.90
4300 5094 5.184892 AGATTCCATGGTCCTATATTGGC 57.815 43.478 12.58 0.00 0.00 4.52
4302 5096 2.712384 TCCATGGTCCTATATTGGCCA 58.288 47.619 12.58 16.92 37.56 5.36
4303 5097 3.268146 TCCATGGTCCTATATTGGCCAT 58.732 45.455 19.02 19.02 41.36 4.40
4307 5101 2.788807 TGGTCCTATATTGGCCATTGGT 59.211 45.455 6.09 0.00 31.61 3.67
4309 5103 3.181434 GGTCCTATATTGGCCATTGGTGA 60.181 47.826 6.09 0.00 0.00 4.02
4342 5138 3.488216 GGCATCGCATTTCTCTTTCTTCC 60.488 47.826 0.00 0.00 0.00 3.46
4366 5162 2.839486 ATTCTTTCGGTGACAGAGCA 57.161 45.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.194972 TGGTATATAATGCCTTCAACAAATTGA 57.805 29.630 0.00 0.00 37.95 2.57
14 15 9.814899 TTGGTATATAATGCCTTCAACAAATTG 57.185 29.630 0.00 0.00 35.87 2.32
16 17 9.420118 TCTTGGTATATAATGCCTTCAACAAAT 57.580 29.630 0.00 0.00 35.87 2.32
17 18 8.815565 TCTTGGTATATAATGCCTTCAACAAA 57.184 30.769 0.00 0.00 35.87 2.83
18 19 8.995027 ATCTTGGTATATAATGCCTTCAACAA 57.005 30.769 0.00 0.00 35.87 2.83
19 20 8.995027 AATCTTGGTATATAATGCCTTCAACA 57.005 30.769 0.00 0.00 35.87 3.33
23 24 9.103861 GCTCTAATCTTGGTATATAATGCCTTC 57.896 37.037 0.00 0.00 35.87 3.46
24 25 8.830741 AGCTCTAATCTTGGTATATAATGCCTT 58.169 33.333 0.00 0.00 35.87 4.35
25 26 8.263640 CAGCTCTAATCTTGGTATATAATGCCT 58.736 37.037 0.00 0.00 35.87 4.75
26 27 8.260818 TCAGCTCTAATCTTGGTATATAATGCC 58.739 37.037 0.00 0.00 35.37 4.40
27 28 9.829507 ATCAGCTCTAATCTTGGTATATAATGC 57.170 33.333 0.00 0.00 0.00 3.56
62 63 7.815641 TCAAATGTTCTCGATGCAGATAAAAA 58.184 30.769 0.00 0.00 0.00 1.94
63 64 7.119699 ACTCAAATGTTCTCGATGCAGATAAAA 59.880 33.333 0.00 0.00 0.00 1.52
64 65 6.595326 ACTCAAATGTTCTCGATGCAGATAAA 59.405 34.615 0.00 0.00 0.00 1.40
65 66 6.108687 ACTCAAATGTTCTCGATGCAGATAA 58.891 36.000 0.00 0.00 0.00 1.75
66 67 5.664457 ACTCAAATGTTCTCGATGCAGATA 58.336 37.500 0.00 0.00 0.00 1.98
67 68 4.511527 ACTCAAATGTTCTCGATGCAGAT 58.488 39.130 0.00 0.00 0.00 2.90
68 69 3.930336 ACTCAAATGTTCTCGATGCAGA 58.070 40.909 0.00 0.00 0.00 4.26
69 70 5.980698 ATACTCAAATGTTCTCGATGCAG 57.019 39.130 0.00 0.00 0.00 4.41
70 71 6.646653 GGATATACTCAAATGTTCTCGATGCA 59.353 38.462 0.00 0.00 0.00 3.96
71 72 6.646653 TGGATATACTCAAATGTTCTCGATGC 59.353 38.462 0.00 0.00 0.00 3.91
72 73 8.768957 ATGGATATACTCAAATGTTCTCGATG 57.231 34.615 0.00 0.00 0.00 3.84
73 74 8.588472 TGATGGATATACTCAAATGTTCTCGAT 58.412 33.333 0.00 0.00 0.00 3.59
74 75 7.951591 TGATGGATATACTCAAATGTTCTCGA 58.048 34.615 0.00 0.00 0.00 4.04
75 76 8.768957 ATGATGGATATACTCAAATGTTCTCG 57.231 34.615 0.00 0.00 0.00 4.04
153 154 9.706691 CTTGTCCTACGACCATATATGTTTAAT 57.293 33.333 11.73 0.00 38.32 1.40
154 155 8.916062 TCTTGTCCTACGACCATATATGTTTAA 58.084 33.333 11.73 0.00 38.32 1.52
155 156 8.467963 TCTTGTCCTACGACCATATATGTTTA 57.532 34.615 11.73 0.00 38.32 2.01
156 157 7.356089 TCTTGTCCTACGACCATATATGTTT 57.644 36.000 11.73 0.00 38.32 2.83
157 158 6.971726 TCTTGTCCTACGACCATATATGTT 57.028 37.500 11.73 0.00 38.32 2.71
158 159 8.107729 TCTATCTTGTCCTACGACCATATATGT 58.892 37.037 11.73 0.18 38.32 2.29
159 160 8.507524 TCTATCTTGTCCTACGACCATATATG 57.492 38.462 5.68 5.68 38.32 1.78
160 161 9.702253 ATTCTATCTTGTCCTACGACCATATAT 57.298 33.333 0.00 0.00 38.32 0.86
161 162 9.529823 AATTCTATCTTGTCCTACGACCATATA 57.470 33.333 0.00 0.00 38.32 0.86
162 163 8.307483 CAATTCTATCTTGTCCTACGACCATAT 58.693 37.037 0.00 0.00 38.32 1.78
163 164 7.287005 ACAATTCTATCTTGTCCTACGACCATA 59.713 37.037 0.00 0.00 38.32 2.74
164 165 6.098409 ACAATTCTATCTTGTCCTACGACCAT 59.902 38.462 0.00 0.00 38.32 3.55
165 166 5.421056 ACAATTCTATCTTGTCCTACGACCA 59.579 40.000 0.00 0.00 38.32 4.02
166 167 5.903810 ACAATTCTATCTTGTCCTACGACC 58.096 41.667 0.00 0.00 38.32 4.79
167 168 6.476053 GGAACAATTCTATCTTGTCCTACGAC 59.524 42.308 0.00 0.00 35.84 4.34
168 169 6.153851 TGGAACAATTCTATCTTGTCCTACGA 59.846 38.462 0.00 0.00 35.84 3.43
169 170 6.338146 TGGAACAATTCTATCTTGTCCTACG 58.662 40.000 0.00 0.00 35.84 3.51
201 202 9.031537 GGAGTTAGGAAATTAAGAATTCCCAAA 57.968 33.333 0.65 0.00 0.00 3.28
202 203 7.618117 GGGAGTTAGGAAATTAAGAATTCCCAA 59.382 37.037 0.65 0.00 0.00 4.12
203 204 7.123383 GGGAGTTAGGAAATTAAGAATTCCCA 58.877 38.462 0.65 0.00 0.00 4.37
204 205 7.123383 TGGGAGTTAGGAAATTAAGAATTCCC 58.877 38.462 0.65 12.38 0.00 3.97
205 206 7.834681 ACTGGGAGTTAGGAAATTAAGAATTCC 59.165 37.037 0.65 8.65 0.00 3.01
206 207 8.809468 ACTGGGAGTTAGGAAATTAAGAATTC 57.191 34.615 0.00 0.00 0.00 2.17
210 211 9.681062 CATTTACTGGGAGTTAGGAAATTAAGA 57.319 33.333 0.00 0.00 36.74 2.10
211 212 9.681062 TCATTTACTGGGAGTTAGGAAATTAAG 57.319 33.333 0.00 0.00 36.74 1.85
214 215 8.803235 GTTTCATTTACTGGGAGTTAGGAAATT 58.197 33.333 0.00 0.00 36.74 1.82
215 216 7.120726 CGTTTCATTTACTGGGAGTTAGGAAAT 59.879 37.037 0.00 0.00 38.83 2.17
216 217 6.428771 CGTTTCATTTACTGGGAGTTAGGAAA 59.571 38.462 0.00 0.00 32.84 3.13
217 218 5.935789 CGTTTCATTTACTGGGAGTTAGGAA 59.064 40.000 0.00 0.00 0.00 3.36
218 219 5.012354 ACGTTTCATTTACTGGGAGTTAGGA 59.988 40.000 0.00 0.00 0.00 2.94
219 220 5.243207 ACGTTTCATTTACTGGGAGTTAGG 58.757 41.667 0.00 0.00 0.00 2.69
220 221 7.095270 ACTACGTTTCATTTACTGGGAGTTAG 58.905 38.462 0.00 0.00 0.00 2.34
221 222 6.996509 ACTACGTTTCATTTACTGGGAGTTA 58.003 36.000 0.00 0.00 0.00 2.24
222 223 5.861727 ACTACGTTTCATTTACTGGGAGTT 58.138 37.500 0.00 0.00 0.00 3.01
223 224 5.245526 AGACTACGTTTCATTTACTGGGAGT 59.754 40.000 0.00 0.00 0.00 3.85
224 225 5.721232 AGACTACGTTTCATTTACTGGGAG 58.279 41.667 0.00 0.00 0.00 4.30
225 226 5.337009 GGAGACTACGTTTCATTTACTGGGA 60.337 44.000 0.00 0.00 0.00 4.37
226 227 4.868734 GGAGACTACGTTTCATTTACTGGG 59.131 45.833 0.00 0.00 0.00 4.45
227 228 5.475719 TGGAGACTACGTTTCATTTACTGG 58.524 41.667 0.00 0.00 0.00 4.00
228 229 7.416154 TTTGGAGACTACGTTTCATTTACTG 57.584 36.000 0.00 0.00 0.00 2.74
229 230 8.617290 ATTTTGGAGACTACGTTTCATTTACT 57.383 30.769 0.00 0.00 0.00 2.24
230 231 9.326339 GAATTTTGGAGACTACGTTTCATTTAC 57.674 33.333 0.00 0.00 0.00 2.01
231 232 9.058174 TGAATTTTGGAGACTACGTTTCATTTA 57.942 29.630 0.00 0.00 0.00 1.40
232 233 7.936584 TGAATTTTGGAGACTACGTTTCATTT 58.063 30.769 0.00 0.00 0.00 2.32
233 234 7.504924 TGAATTTTGGAGACTACGTTTCATT 57.495 32.000 0.00 0.00 0.00 2.57
234 235 7.148239 GGATGAATTTTGGAGACTACGTTTCAT 60.148 37.037 0.00 0.00 34.85 2.57
235 236 6.148811 GGATGAATTTTGGAGACTACGTTTCA 59.851 38.462 0.00 0.00 0.00 2.69
236 237 6.403309 GGGATGAATTTTGGAGACTACGTTTC 60.403 42.308 0.00 0.00 0.00 2.78
237 238 5.414765 GGGATGAATTTTGGAGACTACGTTT 59.585 40.000 0.00 0.00 0.00 3.60
238 239 4.941873 GGGATGAATTTTGGAGACTACGTT 59.058 41.667 0.00 0.00 0.00 3.99
239 240 4.019681 TGGGATGAATTTTGGAGACTACGT 60.020 41.667 0.00 0.00 0.00 3.57
240 241 4.513442 TGGGATGAATTTTGGAGACTACG 58.487 43.478 0.00 0.00 0.00 3.51
241 242 8.697507 ATAATGGGATGAATTTTGGAGACTAC 57.302 34.615 0.00 0.00 0.00 2.73
243 244 7.946776 CCTATAATGGGATGAATTTTGGAGACT 59.053 37.037 0.00 0.00 0.00 3.24
244 245 7.725844 ACCTATAATGGGATGAATTTTGGAGAC 59.274 37.037 0.00 0.00 0.00 3.36
245 246 7.825709 ACCTATAATGGGATGAATTTTGGAGA 58.174 34.615 0.00 0.00 0.00 3.71
246 247 8.482852 AACCTATAATGGGATGAATTTTGGAG 57.517 34.615 0.00 0.00 0.00 3.86
247 248 9.362151 GTAACCTATAATGGGATGAATTTTGGA 57.638 33.333 0.00 0.00 0.00 3.53
248 249 9.367160 AGTAACCTATAATGGGATGAATTTTGG 57.633 33.333 0.00 0.00 0.00 3.28
256 257 9.654663 GCTAGTTTAGTAACCTATAATGGGATG 57.345 37.037 0.00 0.00 34.71 3.51
257 258 8.823794 GGCTAGTTTAGTAACCTATAATGGGAT 58.176 37.037 0.00 0.00 34.71 3.85
258 259 7.236225 GGGCTAGTTTAGTAACCTATAATGGGA 59.764 40.741 0.00 0.00 34.71 4.37
259 260 7.392418 GGGCTAGTTTAGTAACCTATAATGGG 58.608 42.308 0.00 0.00 34.71 4.00
260 261 7.095270 CGGGCTAGTTTAGTAACCTATAATGG 58.905 42.308 0.00 0.00 34.71 3.16
261 262 7.597743 CACGGGCTAGTTTAGTAACCTATAATG 59.402 40.741 0.00 0.00 34.71 1.90
262 263 7.664758 CACGGGCTAGTTTAGTAACCTATAAT 58.335 38.462 0.00 0.00 34.71 1.28
263 264 6.461509 GCACGGGCTAGTTTAGTAACCTATAA 60.462 42.308 0.00 0.00 34.20 0.98
264 265 5.010012 GCACGGGCTAGTTTAGTAACCTATA 59.990 44.000 0.00 0.00 34.20 1.31
265 266 4.202192 GCACGGGCTAGTTTAGTAACCTAT 60.202 45.833 0.00 0.00 34.20 2.57
266 267 3.131046 GCACGGGCTAGTTTAGTAACCTA 59.869 47.826 0.00 0.00 34.20 3.08
267 268 2.093816 GCACGGGCTAGTTTAGTAACCT 60.094 50.000 0.00 0.00 34.20 3.50
268 269 2.274437 GCACGGGCTAGTTTAGTAACC 58.726 52.381 0.00 0.00 34.20 2.85
269 270 1.922545 CGCACGGGCTAGTTTAGTAAC 59.077 52.381 8.62 0.00 38.10 2.50
270 271 1.818060 TCGCACGGGCTAGTTTAGTAA 59.182 47.619 8.62 0.00 38.10 2.24
271 272 1.462616 TCGCACGGGCTAGTTTAGTA 58.537 50.000 8.62 0.00 38.10 1.82
272 273 0.604578 TTCGCACGGGCTAGTTTAGT 59.395 50.000 8.62 0.00 38.10 2.24
273 274 1.593006 CATTCGCACGGGCTAGTTTAG 59.407 52.381 8.62 0.00 38.10 1.85
274 275 1.647346 CATTCGCACGGGCTAGTTTA 58.353 50.000 8.62 0.00 38.10 2.01
275 276 1.644786 GCATTCGCACGGGCTAGTTT 61.645 55.000 8.62 0.00 38.36 2.66
276 277 2.106683 GCATTCGCACGGGCTAGTT 61.107 57.895 8.62 0.00 38.36 2.24
277 278 2.511600 GCATTCGCACGGGCTAGT 60.512 61.111 8.62 0.00 38.36 2.57
278 279 2.511373 TGCATTCGCACGGGCTAG 60.511 61.111 8.62 0.00 45.36 3.42
287 288 2.175811 GTCAACCCGTGCATTCGC 59.824 61.111 0.00 0.00 39.24 4.70
288 289 2.024868 TCGTCAACCCGTGCATTCG 61.025 57.895 0.00 0.00 0.00 3.34
289 290 0.949105 AGTCGTCAACCCGTGCATTC 60.949 55.000 0.00 0.00 0.00 2.67
290 291 0.319083 TAGTCGTCAACCCGTGCATT 59.681 50.000 0.00 0.00 0.00 3.56
291 292 0.108804 CTAGTCGTCAACCCGTGCAT 60.109 55.000 0.00 0.00 0.00 3.96
292 293 1.287815 CTAGTCGTCAACCCGTGCA 59.712 57.895 0.00 0.00 0.00 4.57
293 294 0.319297 AACTAGTCGTCAACCCGTGC 60.319 55.000 0.00 0.00 0.00 5.34
294 295 1.001048 TGAACTAGTCGTCAACCCGTG 60.001 52.381 0.00 0.00 0.00 4.94
295 296 1.321474 TGAACTAGTCGTCAACCCGT 58.679 50.000 0.00 0.00 0.00 5.28
296 297 2.427232 TTGAACTAGTCGTCAACCCG 57.573 50.000 5.99 0.00 0.00 5.28
297 298 6.980051 ATTATTTGAACTAGTCGTCAACCC 57.020 37.500 9.10 0.00 0.00 4.11
298 299 7.749126 CCAAATTATTTGAACTAGTCGTCAACC 59.251 37.037 18.13 0.00 43.26 3.77
299 300 8.500773 TCCAAATTATTTGAACTAGTCGTCAAC 58.499 33.333 18.13 0.00 43.26 3.18
300 301 8.610248 TCCAAATTATTTGAACTAGTCGTCAA 57.390 30.769 18.13 5.99 43.26 3.18
301 302 8.786826 ATCCAAATTATTTGAACTAGTCGTCA 57.213 30.769 18.13 0.00 43.26 4.35
306 307 9.950680 CGCATTATCCAAATTATTTGAACTAGT 57.049 29.630 18.13 0.00 43.26 2.57
307 308 9.398170 CCGCATTATCCAAATTATTTGAACTAG 57.602 33.333 18.13 2.40 43.26 2.57
308 309 9.126151 TCCGCATTATCCAAATTATTTGAACTA 57.874 29.630 18.13 4.89 43.26 2.24
309 310 8.006298 TCCGCATTATCCAAATTATTTGAACT 57.994 30.769 18.13 5.74 43.26 3.01
310 311 8.816640 ATCCGCATTATCCAAATTATTTGAAC 57.183 30.769 18.13 0.43 43.26 3.18
315 316 9.691362 GTGTTAATCCGCATTATCCAAATTATT 57.309 29.630 0.00 0.00 0.00 1.40
316 317 8.020819 CGTGTTAATCCGCATTATCCAAATTAT 58.979 33.333 0.00 0.00 0.00 1.28
317 318 7.356540 CGTGTTAATCCGCATTATCCAAATTA 58.643 34.615 0.00 0.00 0.00 1.40
318 319 6.205784 CGTGTTAATCCGCATTATCCAAATT 58.794 36.000 0.00 0.00 0.00 1.82
319 320 5.278266 CCGTGTTAATCCGCATTATCCAAAT 60.278 40.000 0.00 0.00 0.00 2.32
320 321 4.035792 CCGTGTTAATCCGCATTATCCAAA 59.964 41.667 0.00 0.00 0.00 3.28
321 322 3.562141 CCGTGTTAATCCGCATTATCCAA 59.438 43.478 0.00 0.00 0.00 3.53
322 323 3.135225 CCGTGTTAATCCGCATTATCCA 58.865 45.455 0.00 0.00 0.00 3.41
323 324 3.059188 CACCGTGTTAATCCGCATTATCC 60.059 47.826 0.00 0.00 0.00 2.59
324 325 3.606153 GCACCGTGTTAATCCGCATTATC 60.606 47.826 0.00 0.00 0.00 1.75
325 326 2.289547 GCACCGTGTTAATCCGCATTAT 59.710 45.455 0.00 0.00 0.00 1.28
326 327 1.666700 GCACCGTGTTAATCCGCATTA 59.333 47.619 0.00 0.00 0.00 1.90
327 328 0.450184 GCACCGTGTTAATCCGCATT 59.550 50.000 0.00 0.00 0.00 3.56
328 329 1.373590 GGCACCGTGTTAATCCGCAT 61.374 55.000 0.00 0.00 0.00 4.73
329 330 2.036006 GGCACCGTGTTAATCCGCA 61.036 57.895 0.00 0.00 0.00 5.69
330 331 1.303091 AAGGCACCGTGTTAATCCGC 61.303 55.000 0.00 0.00 0.00 5.54
331 332 0.446222 CAAGGCACCGTGTTAATCCG 59.554 55.000 0.00 0.00 0.00 4.18
332 333 1.467342 GTCAAGGCACCGTGTTAATCC 59.533 52.381 0.00 0.00 0.00 3.01
333 334 2.147958 TGTCAAGGCACCGTGTTAATC 58.852 47.619 0.00 0.00 0.00 1.75
334 335 2.264005 TGTCAAGGCACCGTGTTAAT 57.736 45.000 0.00 0.00 0.00 1.40
335 336 1.944024 CTTGTCAAGGCACCGTGTTAA 59.056 47.619 4.52 0.00 0.00 2.01
336 337 1.139256 TCTTGTCAAGGCACCGTGTTA 59.861 47.619 12.66 0.00 0.00 2.41
337 338 0.107410 TCTTGTCAAGGCACCGTGTT 60.107 50.000 12.66 0.00 0.00 3.32
338 339 0.814010 GTCTTGTCAAGGCACCGTGT 60.814 55.000 12.38 0.00 32.07 4.49
339 340 1.507141 GGTCTTGTCAAGGCACCGTG 61.507 60.000 18.55 0.00 33.90 4.94
340 341 1.227853 GGTCTTGTCAAGGCACCGT 60.228 57.895 18.55 0.00 33.90 4.83
341 342 0.817634 TTGGTCTTGTCAAGGCACCG 60.818 55.000 18.55 0.00 33.90 4.94
342 343 0.954452 CTTGGTCTTGTCAAGGCACC 59.046 55.000 18.55 16.03 38.26 5.01
343 344 1.680338 ACTTGGTCTTGTCAAGGCAC 58.320 50.000 18.55 7.59 44.13 5.01
344 345 3.788227 ATACTTGGTCTTGTCAAGGCA 57.212 42.857 18.55 2.72 44.13 4.75
345 346 3.821033 ACAATACTTGGTCTTGTCAAGGC 59.179 43.478 12.66 10.78 44.13 4.35
346 347 4.216257 CCACAATACTTGGTCTTGTCAAGG 59.784 45.833 12.66 0.00 44.13 3.61
347 348 4.821805 ACCACAATACTTGGTCTTGTCAAG 59.178 41.667 6.21 6.21 44.54 3.02
348 349 4.787551 ACCACAATACTTGGTCTTGTCAA 58.212 39.130 0.00 0.00 44.54 3.18
349 350 4.431416 ACCACAATACTTGGTCTTGTCA 57.569 40.909 0.00 0.00 44.54 3.58
357 358 7.915293 TCTGTTACATAACCACAATACTTGG 57.085 36.000 0.00 0.00 40.32 3.61
383 384 9.069082 ACGTAAGCATGTACTAGAAATCTATCT 57.931 33.333 0.00 0.00 45.62 1.98
384 385 9.332301 GACGTAAGCATGTACTAGAAATCTATC 57.668 37.037 0.00 0.00 45.62 2.08
385 386 8.016229 CGACGTAAGCATGTACTAGAAATCTAT 58.984 37.037 0.00 0.00 45.62 1.98
386 387 7.225341 TCGACGTAAGCATGTACTAGAAATCTA 59.775 37.037 0.00 0.00 45.62 1.98
387 388 6.037940 TCGACGTAAGCATGTACTAGAAATCT 59.962 38.462 0.00 0.00 45.62 2.40
388 389 6.140422 GTCGACGTAAGCATGTACTAGAAATC 59.860 42.308 0.00 0.00 45.62 2.17
389 390 5.970023 GTCGACGTAAGCATGTACTAGAAAT 59.030 40.000 0.00 0.00 45.62 2.17
390 391 5.122869 AGTCGACGTAAGCATGTACTAGAAA 59.877 40.000 10.46 0.00 45.62 2.52
391 392 4.633126 AGTCGACGTAAGCATGTACTAGAA 59.367 41.667 10.46 0.00 45.62 2.10
392 393 4.186926 AGTCGACGTAAGCATGTACTAGA 58.813 43.478 10.46 0.00 45.62 2.43
393 394 4.533225 AGTCGACGTAAGCATGTACTAG 57.467 45.455 10.46 0.00 45.62 2.57
394 395 4.154737 ACAAGTCGACGTAAGCATGTACTA 59.845 41.667 10.46 0.00 45.62 1.82
395 396 3.057736 ACAAGTCGACGTAAGCATGTACT 60.058 43.478 10.46 0.00 45.62 2.73
396 397 3.240069 ACAAGTCGACGTAAGCATGTAC 58.760 45.455 10.46 0.00 45.62 2.90
397 398 3.564235 ACAAGTCGACGTAAGCATGTA 57.436 42.857 10.46 0.00 45.62 2.29
398 399 2.433868 ACAAGTCGACGTAAGCATGT 57.566 45.000 10.46 5.38 45.62 3.21
399 400 4.896562 TTTACAAGTCGACGTAAGCATG 57.103 40.909 10.46 4.78 45.62 4.06
400 401 4.986659 ACTTTTACAAGTCGACGTAAGCAT 59.013 37.500 10.46 0.79 39.15 3.79
401 402 4.362279 ACTTTTACAAGTCGACGTAAGCA 58.638 39.130 10.46 4.08 39.15 3.91
402 403 4.961433 ACTTTTACAAGTCGACGTAAGC 57.039 40.909 10.46 0.00 39.15 3.09
403 404 6.118195 CACAACTTTTACAAGTCGACGTAAG 58.882 40.000 10.46 9.77 42.89 2.34
404 405 5.500610 GCACAACTTTTACAAGTCGACGTAA 60.501 40.000 10.46 10.64 42.89 3.18
405 406 4.026640 GCACAACTTTTACAAGTCGACGTA 60.027 41.667 10.46 4.51 42.89 3.57
406 407 3.242188 GCACAACTTTTACAAGTCGACGT 60.242 43.478 10.46 3.44 42.89 4.34
407 408 3.000925 AGCACAACTTTTACAAGTCGACG 59.999 43.478 10.46 0.00 42.89 5.12
408 409 4.531659 AGCACAACTTTTACAAGTCGAC 57.468 40.909 7.70 7.70 42.89 4.20
409 410 5.328691 CAAAGCACAACTTTTACAAGTCGA 58.671 37.500 0.00 0.00 46.73 4.20
410 411 4.027702 GCAAAGCACAACTTTTACAAGTCG 60.028 41.667 0.00 0.00 46.73 4.18
411 412 4.862018 TGCAAAGCACAACTTTTACAAGTC 59.138 37.500 0.00 0.00 46.73 3.01
412 413 4.815269 TGCAAAGCACAACTTTTACAAGT 58.185 34.783 0.00 0.00 46.73 3.16
413 414 4.268405 CCTGCAAAGCACAACTTTTACAAG 59.732 41.667 0.00 0.00 46.73 3.16
414 415 4.180057 CCTGCAAAGCACAACTTTTACAA 58.820 39.130 0.00 0.00 46.73 2.41
415 416 3.430098 CCCTGCAAAGCACAACTTTTACA 60.430 43.478 0.00 0.00 46.73 2.41
416 417 3.123050 CCCTGCAAAGCACAACTTTTAC 58.877 45.455 0.00 0.00 46.73 2.01
417 418 3.027412 TCCCTGCAAAGCACAACTTTTA 58.973 40.909 0.00 0.00 46.73 1.52
418 419 1.830477 TCCCTGCAAAGCACAACTTTT 59.170 42.857 0.00 0.00 46.73 2.27
420 421 1.035139 CTCCCTGCAAAGCACAACTT 58.965 50.000 0.00 0.00 41.70 2.66
421 422 0.183492 TCTCCCTGCAAAGCACAACT 59.817 50.000 0.00 0.00 33.79 3.16
422 423 1.251251 ATCTCCCTGCAAAGCACAAC 58.749 50.000 0.00 0.00 33.79 3.32
423 424 1.999648 AATCTCCCTGCAAAGCACAA 58.000 45.000 0.00 0.00 33.79 3.33
424 425 1.999648 AAATCTCCCTGCAAAGCACA 58.000 45.000 0.00 0.00 33.79 4.57
425 426 3.391506 AAAAATCTCCCTGCAAAGCAC 57.608 42.857 0.00 0.00 33.79 4.40
451 452 9.692749 TGTATTTTGATATAAAACCGTGCAAAA 57.307 25.926 0.00 0.00 37.89 2.44
452 453 9.862371 ATGTATTTTGATATAAAACCGTGCAAA 57.138 25.926 0.00 0.00 0.00 3.68
453 454 9.862371 AATGTATTTTGATATAAAACCGTGCAA 57.138 25.926 0.00 0.00 0.00 4.08
454 455 9.509855 GAATGTATTTTGATATAAAACCGTGCA 57.490 29.630 0.00 0.00 0.00 4.57
455 456 9.730420 AGAATGTATTTTGATATAAAACCGTGC 57.270 29.630 0.00 0.00 0.00 5.34
467 468 8.888716 TGCACACGTAATAGAATGTATTTTGAT 58.111 29.630 0.00 0.00 0.00 2.57
468 469 8.257830 TGCACACGTAATAGAATGTATTTTGA 57.742 30.769 0.00 0.00 0.00 2.69
469 470 7.639850 CCTGCACACGTAATAGAATGTATTTTG 59.360 37.037 0.00 0.00 0.00 2.44
470 471 7.551262 TCCTGCACACGTAATAGAATGTATTTT 59.449 33.333 0.00 0.00 0.00 1.82
471 472 7.045416 TCCTGCACACGTAATAGAATGTATTT 58.955 34.615 0.00 0.00 0.00 1.40
472 473 6.578944 TCCTGCACACGTAATAGAATGTATT 58.421 36.000 0.00 0.00 0.00 1.89
473 474 6.156748 TCCTGCACACGTAATAGAATGTAT 57.843 37.500 0.00 0.00 0.00 2.29
474 475 5.585820 TCCTGCACACGTAATAGAATGTA 57.414 39.130 0.00 0.00 0.00 2.29
475 476 4.465632 TCCTGCACACGTAATAGAATGT 57.534 40.909 0.00 0.00 0.00 2.71
476 477 5.991328 AATCCTGCACACGTAATAGAATG 57.009 39.130 0.00 0.00 0.00 2.67
477 478 6.112734 TGAAATCCTGCACACGTAATAGAAT 58.887 36.000 0.00 0.00 0.00 2.40
478 479 5.483811 TGAAATCCTGCACACGTAATAGAA 58.516 37.500 0.00 0.00 0.00 2.10
479 480 5.079689 TGAAATCCTGCACACGTAATAGA 57.920 39.130 0.00 0.00 0.00 1.98
480 481 5.794687 TTGAAATCCTGCACACGTAATAG 57.205 39.130 0.00 0.00 0.00 1.73
481 482 6.561737 TTTTGAAATCCTGCACACGTAATA 57.438 33.333 0.00 0.00 0.00 0.98
482 483 5.446143 TTTTGAAATCCTGCACACGTAAT 57.554 34.783 0.00 0.00 0.00 1.89
483 484 4.902443 TTTTGAAATCCTGCACACGTAA 57.098 36.364 0.00 0.00 0.00 3.18
484 485 6.751514 ATATTTTGAAATCCTGCACACGTA 57.248 33.333 0.00 0.00 0.00 3.57
485 486 5.643379 ATATTTTGAAATCCTGCACACGT 57.357 34.783 0.00 0.00 0.00 4.49
486 487 7.540400 TGTTAATATTTTGAAATCCTGCACACG 59.460 33.333 0.00 0.00 0.00 4.49
487 488 8.755696 TGTTAATATTTTGAAATCCTGCACAC 57.244 30.769 0.00 0.00 0.00 3.82
488 489 9.421806 CTTGTTAATATTTTGAAATCCTGCACA 57.578 29.630 0.00 0.00 0.00 4.57
489 490 9.423061 ACTTGTTAATATTTTGAAATCCTGCAC 57.577 29.630 0.00 0.00 0.00 4.57
607 608 9.258826 CATGAAAAACAATTGTATTCAGGAACA 57.741 29.630 29.19 15.51 37.67 3.18
608 609 9.474920 TCATGAAAAACAATTGTATTCAGGAAC 57.525 29.630 31.11 13.60 39.50 3.62
693 694 6.294010 GGTTTCGGAAGATTCTGCTAGTTTTT 60.294 38.462 0.00 0.00 41.60 1.94
694 695 5.181433 GGTTTCGGAAGATTCTGCTAGTTTT 59.819 40.000 0.00 0.00 41.60 2.43
695 696 4.695928 GGTTTCGGAAGATTCTGCTAGTTT 59.304 41.667 0.00 0.00 41.60 2.66
696 697 4.020128 AGGTTTCGGAAGATTCTGCTAGTT 60.020 41.667 0.00 0.00 41.60 2.24
697 698 3.515901 AGGTTTCGGAAGATTCTGCTAGT 59.484 43.478 0.00 0.00 41.60 2.57
698 699 4.130286 AGGTTTCGGAAGATTCTGCTAG 57.870 45.455 0.00 0.00 41.60 3.42
699 700 4.553330 AAGGTTTCGGAAGATTCTGCTA 57.447 40.909 0.00 0.00 41.60 3.49
700 701 3.425162 AAGGTTTCGGAAGATTCTGCT 57.575 42.857 0.00 0.00 41.60 4.24
701 702 3.119814 GGAAAGGTTTCGGAAGATTCTGC 60.120 47.826 0.00 0.00 41.60 4.26
702 703 4.072131 TGGAAAGGTTTCGGAAGATTCTG 58.928 43.478 0.00 0.00 41.60 3.02
703 704 4.367039 TGGAAAGGTTTCGGAAGATTCT 57.633 40.909 0.00 0.00 41.60 2.40
704 705 5.447624 TTTGGAAAGGTTTCGGAAGATTC 57.552 39.130 0.00 0.00 41.60 2.52
705 706 5.362717 AGTTTTGGAAAGGTTTCGGAAGATT 59.637 36.000 0.00 0.00 41.60 2.40
706 707 4.893524 AGTTTTGGAAAGGTTTCGGAAGAT 59.106 37.500 0.00 0.00 41.60 2.40
707 708 4.097286 CAGTTTTGGAAAGGTTTCGGAAGA 59.903 41.667 0.00 0.00 38.06 2.87
708 709 4.097286 TCAGTTTTGGAAAGGTTTCGGAAG 59.903 41.667 0.00 0.00 38.06 3.46
709 710 4.017808 TCAGTTTTGGAAAGGTTTCGGAA 58.982 39.130 0.00 0.00 38.06 4.30
710 711 3.622630 TCAGTTTTGGAAAGGTTTCGGA 58.377 40.909 0.00 0.00 38.06 4.55
711 712 4.379339 TTCAGTTTTGGAAAGGTTTCGG 57.621 40.909 0.00 0.00 38.06 4.30
712 713 6.331170 CTTTTCAGTTTTGGAAAGGTTTCG 57.669 37.500 1.20 0.00 43.42 3.46
718 719 6.169800 TGTTTCCCTTTTCAGTTTTGGAAAG 58.830 36.000 0.00 2.05 45.69 2.62
719 720 6.115448 TGTTTCCCTTTTCAGTTTTGGAAA 57.885 33.333 0.00 0.00 39.00 3.13
720 721 5.729510 CTGTTTCCCTTTTCAGTTTTGGAA 58.270 37.500 0.00 0.00 0.00 3.53
721 722 4.382577 GCTGTTTCCCTTTTCAGTTTTGGA 60.383 41.667 0.00 0.00 0.00 3.53
722 723 3.871006 GCTGTTTCCCTTTTCAGTTTTGG 59.129 43.478 0.00 0.00 0.00 3.28
723 724 4.329801 GTGCTGTTTCCCTTTTCAGTTTTG 59.670 41.667 0.00 0.00 0.00 2.44
724 725 4.020662 TGTGCTGTTTCCCTTTTCAGTTTT 60.021 37.500 0.00 0.00 0.00 2.43
725 726 3.513515 TGTGCTGTTTCCCTTTTCAGTTT 59.486 39.130 0.00 0.00 0.00 2.66
726 727 3.096092 TGTGCTGTTTCCCTTTTCAGTT 58.904 40.909 0.00 0.00 0.00 3.16
727 728 2.689983 CTGTGCTGTTTCCCTTTTCAGT 59.310 45.455 0.00 0.00 0.00 3.41
728 729 2.951642 TCTGTGCTGTTTCCCTTTTCAG 59.048 45.455 0.00 0.00 0.00 3.02
729 730 3.011566 TCTGTGCTGTTTCCCTTTTCA 57.988 42.857 0.00 0.00 0.00 2.69
730 731 4.385358 TTTCTGTGCTGTTTCCCTTTTC 57.615 40.909 0.00 0.00 0.00 2.29
731 732 4.020662 TGTTTTCTGTGCTGTTTCCCTTTT 60.021 37.500 0.00 0.00 0.00 2.27
732 733 3.513515 TGTTTTCTGTGCTGTTTCCCTTT 59.486 39.130 0.00 0.00 0.00 3.11
733 734 3.096092 TGTTTTCTGTGCTGTTTCCCTT 58.904 40.909 0.00 0.00 0.00 3.95
734 735 2.733956 TGTTTTCTGTGCTGTTTCCCT 58.266 42.857 0.00 0.00 0.00 4.20
735 736 3.733443 ATGTTTTCTGTGCTGTTTCCC 57.267 42.857 0.00 0.00 0.00 3.97
736 737 6.421377 AAAAATGTTTTCTGTGCTGTTTCC 57.579 33.333 0.00 0.00 0.00 3.13
780 783 2.639065 ACATTGACAAAGTCACCACGT 58.361 42.857 0.00 0.00 42.60 4.49
802 805 7.550906 TCTTAAAAATGTTGGGGTTTTCAACTG 59.449 33.333 8.17 0.00 43.36 3.16
803 806 7.625469 TCTTAAAAATGTTGGGGTTTTCAACT 58.375 30.769 8.17 0.00 43.36 3.16
807 810 8.725405 TTTCTCTTAAAAATGTTGGGGTTTTC 57.275 30.769 0.00 0.00 0.00 2.29
938 944 4.428615 GAGAAGACTCTGCTTCGTTAGT 57.571 45.455 0.00 0.00 46.81 2.24
950 956 4.086457 ACCAGAGGAAAGAGAGAAGACTC 58.914 47.826 0.00 0.00 42.90 3.36
1182 1225 1.787847 CATTCGGTCGAACAGGTGC 59.212 57.895 8.00 0.00 36.91 5.01
1320 1363 1.144298 GGGAAGGTGTACTTGTTGGGT 59.856 52.381 0.00 0.00 40.21 4.51
1446 1490 0.033503 TGTAGAGGTCGATGAGGGCA 60.034 55.000 0.00 0.00 0.00 5.36
1575 1619 4.700365 CACTCGAGCGCGTGGTGA 62.700 66.667 23.99 2.74 41.11 4.02
1635 1679 4.357947 GCGACGAGTGTGGAGGCA 62.358 66.667 0.00 0.00 0.00 4.75
1717 1768 2.418910 CGTGGAGAGAGGCACGGAT 61.419 63.158 0.00 0.00 37.40 4.18
1785 1836 0.532862 CGTAGAGCAATTCCCCGCAT 60.533 55.000 0.00 0.00 0.00 4.73
1833 1884 3.557595 CGCTCCAAGTAACATCATTCCTC 59.442 47.826 0.00 0.00 0.00 3.71
1839 1890 0.323302 TGGCGCTCCAAGTAACATCA 59.677 50.000 7.64 0.00 39.99 3.07
1992 2184 3.116300 CTGTTTACCGATGTGGAGATCG 58.884 50.000 0.00 0.00 44.00 3.69
2031 2223 1.988107 TCAGAGTGGAGGCCAGATTTT 59.012 47.619 5.01 0.00 32.34 1.82
2190 2610 1.436195 GAAACGCTGCATCCGCCATA 61.436 55.000 0.00 0.00 37.32 2.74
2738 3158 1.468565 CGTCTGCTTTCATTGGCATGG 60.469 52.381 0.00 0.00 37.83 3.66
2901 3321 0.807667 CTGCCTCGTCAAATCTCCCG 60.808 60.000 0.00 0.00 0.00 5.14
2982 3402 4.386711 CATGCAGAGAGCCATTTATCTCA 58.613 43.478 5.13 0.00 43.64 3.27
3153 3573 7.095017 GCTAGCTTTTCACTGTGATAAAGAAGT 60.095 37.037 28.94 20.72 31.93 3.01
3351 3771 4.072131 GTCACCAAAAATCTCCACAGCTA 58.928 43.478 0.00 0.00 0.00 3.32
3486 4227 2.103432 TGCAGGAACGTAGAAACTTGGA 59.897 45.455 0.00 0.00 0.00 3.53
3532 4273 3.254166 ACTTCATGACACCATCACTTTGC 59.746 43.478 0.00 0.00 41.24 3.68
3619 4363 8.140112 ACCTACAGAATCAGATCTTGTTTACT 57.860 34.615 2.47 0.00 0.00 2.24
3653 4407 5.593909 ACAATTCAGTGTCATCTTGGTTTGA 59.406 36.000 0.00 0.00 0.00 2.69
3680 4434 0.886490 AGAGAAAGCACCAACGCCAG 60.886 55.000 0.00 0.00 0.00 4.85
3697 4451 2.103153 AGTTTCCTGTGACCTGGAGA 57.897 50.000 0.00 0.00 39.55 3.71
3750 4505 9.944376 AGTTCTATTTGTGTCATTCTAGCTTTA 57.056 29.630 0.00 0.00 0.00 1.85
3751 4506 8.854614 AGTTCTATTTGTGTCATTCTAGCTTT 57.145 30.769 0.00 0.00 0.00 3.51
3785 4540 5.605534 CATGTACCTCTGGGATTTCTACTG 58.394 45.833 0.00 0.00 36.25 2.74
3879 4636 3.244215 TGCGAAGGAATACAGGATCATCC 60.244 47.826 0.00 0.00 36.58 3.51
3880 4637 3.743396 GTGCGAAGGAATACAGGATCATC 59.257 47.826 0.00 0.00 0.00 2.92
3890 4647 2.433239 GGTAGGGAAGTGCGAAGGAATA 59.567 50.000 0.00 0.00 0.00 1.75
3891 4648 1.209747 GGTAGGGAAGTGCGAAGGAAT 59.790 52.381 0.00 0.00 0.00 3.01
3892 4649 0.611714 GGTAGGGAAGTGCGAAGGAA 59.388 55.000 0.00 0.00 0.00 3.36
3893 4650 1.262640 GGGTAGGGAAGTGCGAAGGA 61.263 60.000 0.00 0.00 0.00 3.36
3894 4651 1.221021 GGGTAGGGAAGTGCGAAGG 59.779 63.158 0.00 0.00 0.00 3.46
3895 4652 0.108138 CAGGGTAGGGAAGTGCGAAG 60.108 60.000 0.00 0.00 0.00 3.79
3896 4653 1.550130 CCAGGGTAGGGAAGTGCGAA 61.550 60.000 0.00 0.00 0.00 4.70
3897 4654 1.987855 CCAGGGTAGGGAAGTGCGA 60.988 63.158 0.00 0.00 0.00 5.10
3910 4667 6.070656 TGATTGCCTTTTCTAATATCCAGGG 58.929 40.000 0.00 0.00 0.00 4.45
3917 4674 8.402798 TCACTTGTTGATTGCCTTTTCTAATA 57.597 30.769 0.00 0.00 0.00 0.98
3935 4692 4.998033 GCTTAAGAGCCTAACTTCACTTGT 59.002 41.667 6.67 0.00 43.29 3.16
4043 4805 6.014584 TGTGATCTCTTGCAGTAAGAAGGTAA 60.015 38.462 2.29 0.00 44.47 2.85
4070 4832 3.585862 TCGCTGAACAAGTTCCTGATAC 58.414 45.455 10.19 0.00 38.77 2.24
4120 4901 4.929808 CACGCCTTCTGTTCATAGTTAGTT 59.070 41.667 0.00 0.00 0.00 2.24
4121 4902 4.495422 CACGCCTTCTGTTCATAGTTAGT 58.505 43.478 0.00 0.00 0.00 2.24
4133 4914 0.169672 CCTCAAATGCACGCCTTCTG 59.830 55.000 0.00 0.00 0.00 3.02
4204 4992 4.201940 GGTTACCCCCGACAAATAAAATCG 60.202 45.833 0.00 0.00 35.62 3.34
4206 4994 4.675038 TGGTTACCCCCGACAAATAAAAT 58.325 39.130 0.00 0.00 0.00 1.82
4222 5010 1.299976 CAGACCCCCAGCTGGTTAC 59.700 63.158 30.63 18.03 35.85 2.50
4237 5025 2.025226 ACCGATAGAGGTCCAAGACAGA 60.025 50.000 0.00 0.00 41.46 3.41
4302 5096 0.032813 CCCTTGGCTCCATCACCAAT 60.033 55.000 0.00 0.00 44.67 3.16
4303 5097 1.383799 CCCTTGGCTCCATCACCAA 59.616 57.895 0.00 0.00 43.59 3.67
4342 5138 4.377841 GCTCTGTCACCGAAAGAATTCAAG 60.378 45.833 8.44 0.00 35.15 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.