Multiple sequence alignment - TraesCS5D01G517500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G517500 chr5D 100.000 4211 0 0 1 4211 539452763 539456973 0.000000e+00 7777.0
1 TraesCS5D01G517500 chr5D 76.819 371 52 17 67 410 504811733 504811370 1.200000e-40 178.0
2 TraesCS5D01G517500 chr5D 90.110 91 8 1 319 409 111047141 111047052 2.660000e-22 117.0
3 TraesCS5D01G517500 chr5D 90.110 91 8 1 319 409 166383222 166383133 2.660000e-22 117.0
4 TraesCS5D01G517500 chr5B 89.237 3196 223 53 59 3167 680992548 680995709 0.000000e+00 3884.0
5 TraesCS5D01G517500 chr5B 86.567 67 8 1 423 489 427077855 427077790 5.840000e-09 73.1
6 TraesCS5D01G517500 chr4A 88.185 1879 137 18 1 1795 629295304 629293427 0.000000e+00 2161.0
7 TraesCS5D01G517500 chr4A 85.345 2129 263 34 1048 3153 681920580 681918478 0.000000e+00 2158.0
8 TraesCS5D01G517500 chr4A 83.671 692 94 15 2479 3167 629293438 629292763 5.940000e-178 634.0
9 TraesCS5D01G517500 chr4A 83.750 560 68 6 3646 4196 713510328 713510873 3.760000e-140 508.0
10 TraesCS5D01G517500 chr4A 83.393 560 70 6 3646 4196 713882927 713882382 8.130000e-137 497.0
11 TraesCS5D01G517500 chr4D 84.782 2129 275 24 1048 3153 475179049 475176947 0.000000e+00 2091.0
12 TraesCS5D01G517500 chr4D 84.365 614 72 18 3608 4210 417805001 417804401 7.850000e-162 580.0
13 TraesCS5D01G517500 chr4D 87.742 465 49 5 3739 4196 401351935 401352398 1.720000e-148 536.0
14 TraesCS5D01G517500 chr4D 91.209 91 7 1 319 409 324721011 324720922 5.720000e-24 122.0
15 TraesCS5D01G517500 chr4D 91.111 45 4 0 588 632 75796391 75796347 1.260000e-05 62.1
16 TraesCS5D01G517500 chr4B 84.406 2129 283 23 1048 3153 599887108 599885006 0.000000e+00 2047.0
17 TraesCS5D01G517500 chr4B 74.095 525 83 30 91 578 168913857 168913349 2.600000e-37 167.0
18 TraesCS5D01G517500 chr4B 91.228 57 4 1 4 60 89468959 89469014 4.510000e-10 76.8
19 TraesCS5D01G517500 chr3D 87.524 529 49 6 3682 4201 45688684 45689204 2.800000e-166 595.0
20 TraesCS5D01G517500 chr3D 84.393 173 18 7 418 583 571003262 571003092 1.210000e-35 161.0
21 TraesCS5D01G517500 chr6D 87.778 450 49 4 3763 4211 219790197 219790641 4.820000e-144 521.0
22 TraesCS5D01G517500 chr6D 80.992 605 71 16 66 626 343136277 343135673 1.390000e-119 440.0
23 TraesCS5D01G517500 chr6D 76.732 563 75 22 64 579 346269996 346269443 3.230000e-66 263.0
24 TraesCS5D01G517500 chr7B 87.309 457 52 4 3745 4195 558751785 558751329 6.240000e-143 518.0
25 TraesCS5D01G517500 chr7B 78.689 366 54 10 68 410 237472565 237472201 5.480000e-54 222.0
26 TraesCS5D01G517500 chr2D 88.073 436 48 4 3777 4211 539015141 539014709 8.070000e-142 514.0
27 TraesCS5D01G517500 chr2D 84.252 254 35 2 68 321 471394751 471394503 4.210000e-60 243.0
28 TraesCS5D01G517500 chr2D 79.911 224 16 15 3410 3616 547592163 547591952 2.040000e-28 137.0
29 TraesCS5D01G517500 chr2D 89.474 95 8 2 316 409 285047409 285047316 7.400000e-23 119.0
30 TraesCS5D01G517500 chr2D 84.000 75 10 2 417 489 149223425 149223499 2.100000e-08 71.3
31 TraesCS5D01G517500 chr2B 84.211 532 73 7 3687 4209 692075645 692075116 1.350000e-139 507.0
32 TraesCS5D01G517500 chr2B 84.071 226 17 8 3410 3616 653816109 653815884 2.570000e-47 200.0
33 TraesCS5D01G517500 chr2B 91.209 91 7 1 319 409 778530954 778530865 5.720000e-24 122.0
34 TraesCS5D01G517500 chr2B 100.000 32 0 0 1712 1743 73551570 73551539 4.550000e-05 60.2
35 TraesCS5D01G517500 chr7D 78.723 611 77 24 68 631 259300202 259299598 4.000000e-95 359.0
36 TraesCS5D01G517500 chr7D 84.252 254 31 8 68 318 580175164 580175411 5.440000e-59 239.0
37 TraesCS5D01G517500 chr7D 86.250 160 21 1 417 576 186517115 186517273 5.600000e-39 172.0
38 TraesCS5D01G517500 chr7D 85.333 75 9 2 417 489 266042540 266042614 4.510000e-10 76.8
39 TraesCS5D01G517500 chr7D 97.059 34 1 0 2682 2715 101138992 101138959 1.640000e-04 58.4
40 TraesCS5D01G517500 chr1A 79.719 498 70 12 68 540 445512744 445513235 8.730000e-87 331.0
41 TraesCS5D01G517500 chr1D 78.159 554 76 22 68 578 17239988 17239437 1.140000e-80 311.0
42 TraesCS5D01G517500 chr1D 82.206 281 28 10 3355 3614 21892971 21892692 5.480000e-54 222.0
43 TraesCS5D01G517500 chr1D 81.495 281 30 9 3355 3614 21918863 21918584 1.190000e-50 211.0
44 TraesCS5D01G517500 chr2A 76.370 584 83 20 68 598 430598859 430598278 3.230000e-66 263.0
45 TraesCS5D01G517500 chr2A 83.700 227 17 8 3410 3616 691379314 691379540 3.320000e-46 196.0
46 TraesCS5D01G517500 chr2A 88.660 97 10 1 313 409 601157180 601157275 2.660000e-22 117.0
47 TraesCS5D01G517500 chr6A 84.898 245 35 2 64 308 70969440 70969682 3.250000e-61 246.0
48 TraesCS5D01G517500 chr3B 84.762 105 16 0 479 583 395898502 395898606 5.760000e-19 106.0
49 TraesCS5D01G517500 chr1B 91.045 67 6 0 2 68 613952199 613952265 1.610000e-14 91.6
50 TraesCS5D01G517500 chr5A 89.394 66 7 0 3 68 386701150 386701215 2.700000e-12 84.2
51 TraesCS5D01G517500 chr7A 97.059 34 1 0 2682 2715 103400206 103400173 1.640000e-04 58.4
52 TraesCS5D01G517500 chr6B 100.000 31 0 0 600 630 593376155 593376125 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G517500 chr5D 539452763 539456973 4210 False 7777.0 7777 100.000 1 4211 1 chr5D.!!$F1 4210
1 TraesCS5D01G517500 chr5B 680992548 680995709 3161 False 3884.0 3884 89.237 59 3167 1 chr5B.!!$F1 3108
2 TraesCS5D01G517500 chr4A 681918478 681920580 2102 True 2158.0 2158 85.345 1048 3153 1 chr4A.!!$R1 2105
3 TraesCS5D01G517500 chr4A 629292763 629295304 2541 True 1397.5 2161 85.928 1 3167 2 chr4A.!!$R3 3166
4 TraesCS5D01G517500 chr4A 713510328 713510873 545 False 508.0 508 83.750 3646 4196 1 chr4A.!!$F1 550
5 TraesCS5D01G517500 chr4A 713882382 713882927 545 True 497.0 497 83.393 3646 4196 1 chr4A.!!$R2 550
6 TraesCS5D01G517500 chr4D 475176947 475179049 2102 True 2091.0 2091 84.782 1048 3153 1 chr4D.!!$R4 2105
7 TraesCS5D01G517500 chr4D 417804401 417805001 600 True 580.0 580 84.365 3608 4210 1 chr4D.!!$R3 602
8 TraesCS5D01G517500 chr4B 599885006 599887108 2102 True 2047.0 2047 84.406 1048 3153 1 chr4B.!!$R2 2105
9 TraesCS5D01G517500 chr3D 45688684 45689204 520 False 595.0 595 87.524 3682 4201 1 chr3D.!!$F1 519
10 TraesCS5D01G517500 chr6D 343135673 343136277 604 True 440.0 440 80.992 66 626 1 chr6D.!!$R1 560
11 TraesCS5D01G517500 chr6D 346269443 346269996 553 True 263.0 263 76.732 64 579 1 chr6D.!!$R2 515
12 TraesCS5D01G517500 chr2B 692075116 692075645 529 True 507.0 507 84.211 3687 4209 1 chr2B.!!$R3 522
13 TraesCS5D01G517500 chr7D 259299598 259300202 604 True 359.0 359 78.723 68 631 1 chr7D.!!$R2 563
14 TraesCS5D01G517500 chr1D 17239437 17239988 551 True 311.0 311 78.159 68 578 1 chr1D.!!$R1 510
15 TraesCS5D01G517500 chr2A 430598278 430598859 581 True 263.0 263 76.370 68 598 1 chr2A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 676 0.318441 CAGTTGCTGGAGGTTCGAGA 59.682 55.0 0.0 0.0 0.00 4.04 F
1017 1115 0.302890 GCATGGCGAGTGAAGAATCG 59.697 55.0 0.0 0.0 41.79 3.34 F
1022 1120 0.647925 GCGAGTGAAGAATCGAAGGC 59.352 55.0 0.0 0.0 41.40 4.35 F
3001 3130 0.036875 CGGAGCCCTCTTTCTTGGTT 59.963 55.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2004 0.599204 GTGCGTTTTCGGAGAGGTCA 60.599 55.000 0.0 0.0 45.51 4.02 R
1952 2069 1.239296 GCACATGAGGTTGAGCAGCA 61.239 55.000 0.0 0.0 33.96 4.41 R
3019 3148 1.079405 CGCCACCATTGACGTACCT 60.079 57.895 0.0 0.0 0.00 3.08 R
3920 4095 0.907230 GAGAGGAGGACAAGGTGGCT 60.907 60.000 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 233 4.603946 GGCATAGGGACGGACGGC 62.604 72.222 0.00 0.00 0.00 5.68
251 263 3.575351 GAGACGCCTCGGCAACTGT 62.575 63.158 8.87 0.00 37.34 3.55
437 494 1.691823 GGGAGGAGGAGGGGTTTTG 59.308 63.158 0.00 0.00 0.00 2.44
472 530 1.379044 CAGAAGCGGGCTTGGGATT 60.379 57.895 11.17 0.00 36.26 3.01
477 535 2.035626 CGGGCTTGGGATTGGTGT 59.964 61.111 0.00 0.00 0.00 4.16
556 624 4.203076 GTGCCGCGGACCGATACT 62.203 66.667 33.48 0.00 40.02 2.12
595 664 0.949105 CCGCGGTTAGAACAGTTGCT 60.949 55.000 19.50 0.00 0.00 3.91
603 672 2.262423 AGAACAGTTGCTGGAGGTTC 57.738 50.000 0.00 0.00 38.44 3.62
607 676 0.318441 CAGTTGCTGGAGGTTCGAGA 59.682 55.000 0.00 0.00 0.00 4.04
634 703 3.016736 CGTTGGAGATGCCCTAACAATT 58.983 45.455 0.00 0.00 34.97 2.32
771 841 2.881441 GAGTCGTCAACTCGCAACA 58.119 52.632 0.00 0.00 44.79 3.33
1010 1108 2.181777 GACGAGCATGGCGAGTGA 59.818 61.111 0.00 0.00 0.00 3.41
1011 1109 1.446099 GACGAGCATGGCGAGTGAA 60.446 57.895 0.00 0.00 0.00 3.18
1012 1110 1.416813 GACGAGCATGGCGAGTGAAG 61.417 60.000 0.00 0.00 0.00 3.02
1013 1111 1.153765 CGAGCATGGCGAGTGAAGA 60.154 57.895 0.00 0.00 0.00 2.87
1015 1113 1.661341 GAGCATGGCGAGTGAAGAAT 58.339 50.000 0.00 0.00 0.00 2.40
1017 1115 0.302890 GCATGGCGAGTGAAGAATCG 59.697 55.000 0.00 0.00 41.79 3.34
1018 1116 1.926561 CATGGCGAGTGAAGAATCGA 58.073 50.000 0.00 0.00 41.40 3.59
1021 1119 1.281899 GGCGAGTGAAGAATCGAAGG 58.718 55.000 0.00 0.00 41.40 3.46
1022 1120 0.647925 GCGAGTGAAGAATCGAAGGC 59.352 55.000 0.00 0.00 41.40 4.35
1023 1121 1.996292 CGAGTGAAGAATCGAAGGCA 58.004 50.000 0.00 0.00 41.40 4.75
1024 1122 1.656095 CGAGTGAAGAATCGAAGGCAC 59.344 52.381 0.00 0.00 41.40 5.01
1025 1123 2.003301 GAGTGAAGAATCGAAGGCACC 58.997 52.381 0.00 0.00 0.00 5.01
1028 1144 1.066143 TGAAGAATCGAAGGCACCCTC 60.066 52.381 0.00 0.00 30.89 4.30
1036 1152 2.079326 AAGGCACCCTCCTTCTTCC 58.921 57.895 0.00 0.00 42.55 3.46
1041 1157 1.339535 GCACCCTCCTTCTTCCTCTTG 60.340 57.143 0.00 0.00 0.00 3.02
1482 1599 2.943653 GGCAACAACTTCGTCGGG 59.056 61.111 0.00 0.00 0.00 5.14
1557 1674 1.004560 CGGCTTCTTCTCTGGCACA 60.005 57.895 0.00 0.00 0.00 4.57
1755 1872 1.742411 CGGTACCTTGACATGGCGATT 60.742 52.381 10.90 0.00 0.00 3.34
1887 2004 0.904865 TGTCCTCCCTCGTCATGCTT 60.905 55.000 0.00 0.00 0.00 3.91
2334 2451 3.801997 CTGGAGCTGGCCGGGAAT 61.802 66.667 15.02 0.00 0.00 3.01
2336 2453 4.883354 GGAGCTGGCCGGGAATGG 62.883 72.222 15.02 0.00 0.00 3.16
2594 2711 4.600576 TCTTGCGTCGTGCCAGCA 62.601 61.111 0.00 0.00 45.60 4.41
2623 2740 1.205655 CGCTGATCCTCAGGAGAAACA 59.794 52.381 0.00 0.00 44.43 2.83
2818 2935 2.038813 TGAGGACGATCAGCCCCA 59.961 61.111 0.00 0.00 0.00 4.96
2826 2943 1.153349 GATCAGCCCCAACGACCTC 60.153 63.158 0.00 0.00 0.00 3.85
2926 3055 3.337889 GCTCGCACGTGAAGCACA 61.338 61.111 28.16 5.23 33.40 4.57
2929 3058 2.423517 CGCACGTGAAGCACAACG 60.424 61.111 22.23 6.64 33.40 4.10
2967 3096 2.407616 CGCATCTCGGTCGCACTA 59.592 61.111 0.00 0.00 33.78 2.74
2970 3099 0.592754 GCATCTCGGTCGCACTACTC 60.593 60.000 0.00 0.00 0.00 2.59
2973 3102 1.226046 CTCGGTCGCACTACTCGTG 60.226 63.158 0.00 0.00 46.58 4.35
2974 3103 2.202440 CGGTCGCACTACTCGTGG 60.202 66.667 0.00 0.00 43.97 4.94
2975 3104 2.506438 GGTCGCACTACTCGTGGC 60.506 66.667 0.00 0.00 43.97 5.01
2976 3105 2.257371 GTCGCACTACTCGTGGCA 59.743 61.111 0.00 0.00 43.97 4.92
2977 3106 1.153823 GTCGCACTACTCGTGGCAT 60.154 57.895 0.00 0.00 43.97 4.40
2978 3107 1.153842 TCGCACTACTCGTGGCATG 60.154 57.895 0.00 0.00 43.97 4.06
2979 3108 2.802667 CGCACTACTCGTGGCATGC 61.803 63.158 9.90 9.90 43.97 4.06
2980 3109 2.802667 GCACTACTCGTGGCATGCG 61.803 63.158 12.44 0.00 43.97 4.73
3001 3130 0.036875 CGGAGCCCTCTTTCTTGGTT 59.963 55.000 0.00 0.00 0.00 3.67
3002 3131 1.545651 CGGAGCCCTCTTTCTTGGTTT 60.546 52.381 0.00 0.00 0.00 3.27
3009 3138 3.486383 CCTCTTTCTTGGTTTGGTGCTA 58.514 45.455 0.00 0.00 0.00 3.49
3035 3164 0.459585 CGGAGGTACGTCAATGGTGG 60.460 60.000 16.80 0.00 0.00 4.61
3036 3165 0.743345 GGAGGTACGTCAATGGTGGC 60.743 60.000 16.80 0.00 0.00 5.01
3076 3205 1.667154 CGAGGATGACGGGAGAAGCA 61.667 60.000 0.00 0.00 0.00 3.91
3077 3206 0.103937 GAGGATGACGGGAGAAGCAG 59.896 60.000 0.00 0.00 0.00 4.24
3081 3210 1.260538 ATGACGGGAGAAGCAGCTCA 61.261 55.000 0.00 0.00 36.62 4.26
3090 3231 2.117941 GAAGCAGCTCAACGGCGTTT 62.118 55.000 24.49 5.57 45.09 3.60
3105 3246 1.334689 GCGTTTCAGCGGCTAAGTTTT 60.335 47.619 0.26 0.00 0.00 2.43
3114 3255 0.367887 GGCTAAGTTTTACCGACGCG 59.632 55.000 3.53 3.53 0.00 6.01
3115 3256 0.247028 GCTAAGTTTTACCGACGCGC 60.247 55.000 5.73 0.00 0.00 6.86
3144 3285 1.742761 CATGCGTCAAGGAGGACAAT 58.257 50.000 0.00 0.00 37.66 2.71
3153 3294 1.329256 AGGAGGACAATATCGTCGGG 58.671 55.000 0.00 0.00 42.18 5.14
3163 3304 1.600511 TATCGTCGGGCAGCAAGTCA 61.601 55.000 0.00 0.00 0.00 3.41
3167 3308 2.979676 CGGGCAGCAAGTCAAGCA 60.980 61.111 0.00 0.00 0.00 3.91
3168 3309 2.554636 CGGGCAGCAAGTCAAGCAA 61.555 57.895 0.00 0.00 0.00 3.91
3169 3310 1.288127 GGGCAGCAAGTCAAGCAAG 59.712 57.895 0.00 0.00 0.00 4.01
3170 3311 1.174712 GGGCAGCAAGTCAAGCAAGA 61.175 55.000 0.00 0.00 0.00 3.02
3171 3312 0.670162 GGCAGCAAGTCAAGCAAGAA 59.330 50.000 0.00 0.00 0.00 2.52
3172 3313 1.335689 GGCAGCAAGTCAAGCAAGAAG 60.336 52.381 0.00 0.00 0.00 2.85
3173 3314 1.336125 GCAGCAAGTCAAGCAAGAAGT 59.664 47.619 0.00 0.00 0.00 3.01
3174 3315 2.549754 GCAGCAAGTCAAGCAAGAAGTA 59.450 45.455 0.00 0.00 0.00 2.24
3175 3316 3.364764 GCAGCAAGTCAAGCAAGAAGTAG 60.365 47.826 0.00 0.00 0.00 2.57
3176 3317 3.188048 CAGCAAGTCAAGCAAGAAGTAGG 59.812 47.826 0.00 0.00 0.00 3.18
3177 3318 3.071602 AGCAAGTCAAGCAAGAAGTAGGA 59.928 43.478 0.00 0.00 0.00 2.94
3178 3319 4.006319 GCAAGTCAAGCAAGAAGTAGGAT 58.994 43.478 0.00 0.00 0.00 3.24
3179 3320 4.142730 GCAAGTCAAGCAAGAAGTAGGATG 60.143 45.833 0.00 0.00 0.00 3.51
3180 3321 3.604582 AGTCAAGCAAGAAGTAGGATGC 58.395 45.455 0.00 0.00 39.06 3.91
3181 3322 2.349886 GTCAAGCAAGAAGTAGGATGCG 59.650 50.000 0.00 0.00 43.39 4.73
3182 3323 2.233676 TCAAGCAAGAAGTAGGATGCGA 59.766 45.455 0.00 0.00 43.39 5.10
3183 3324 3.118629 TCAAGCAAGAAGTAGGATGCGAT 60.119 43.478 0.00 0.00 43.39 4.58
3184 3325 2.831333 AGCAAGAAGTAGGATGCGATG 58.169 47.619 0.00 0.00 43.39 3.84
3185 3326 1.869767 GCAAGAAGTAGGATGCGATGG 59.130 52.381 0.00 0.00 0.00 3.51
3186 3327 2.743183 GCAAGAAGTAGGATGCGATGGT 60.743 50.000 0.00 0.00 0.00 3.55
3187 3328 3.492656 GCAAGAAGTAGGATGCGATGGTA 60.493 47.826 0.00 0.00 0.00 3.25
3188 3329 4.800914 GCAAGAAGTAGGATGCGATGGTAT 60.801 45.833 0.00 0.00 0.00 2.73
3189 3330 5.566826 GCAAGAAGTAGGATGCGATGGTATA 60.567 44.000 0.00 0.00 0.00 1.47
3190 3331 5.906113 AGAAGTAGGATGCGATGGTATAG 57.094 43.478 0.00 0.00 0.00 1.31
3191 3332 4.707448 AGAAGTAGGATGCGATGGTATAGG 59.293 45.833 0.00 0.00 0.00 2.57
3192 3333 4.317530 AGTAGGATGCGATGGTATAGGA 57.682 45.455 0.00 0.00 0.00 2.94
3193 3334 4.274147 AGTAGGATGCGATGGTATAGGAG 58.726 47.826 0.00 0.00 0.00 3.69
3194 3335 1.827969 AGGATGCGATGGTATAGGAGC 59.172 52.381 0.00 0.00 0.00 4.70
3195 3336 1.550524 GGATGCGATGGTATAGGAGCA 59.449 52.381 0.00 0.00 40.58 4.26
3196 3337 2.611518 GATGCGATGGTATAGGAGCAC 58.388 52.381 0.00 0.00 38.68 4.40
3197 3338 1.408969 TGCGATGGTATAGGAGCACA 58.591 50.000 0.00 0.00 38.68 4.57
3198 3339 1.760029 TGCGATGGTATAGGAGCACAA 59.240 47.619 0.00 0.00 38.68 3.33
3199 3340 2.169561 TGCGATGGTATAGGAGCACAAA 59.830 45.455 0.00 0.00 38.68 2.83
3200 3341 3.202906 GCGATGGTATAGGAGCACAAAA 58.797 45.455 0.00 0.00 38.68 2.44
3201 3342 3.815401 GCGATGGTATAGGAGCACAAAAT 59.185 43.478 0.00 0.00 38.68 1.82
3202 3343 4.083802 GCGATGGTATAGGAGCACAAAATC 60.084 45.833 0.00 0.00 38.68 2.17
3203 3344 5.056480 CGATGGTATAGGAGCACAAAATCA 58.944 41.667 0.00 0.00 38.68 2.57
3204 3345 5.702670 CGATGGTATAGGAGCACAAAATCAT 59.297 40.000 0.00 0.00 38.68 2.45
3205 3346 6.873605 CGATGGTATAGGAGCACAAAATCATA 59.126 38.462 0.00 0.00 38.68 2.15
3206 3347 7.387673 CGATGGTATAGGAGCACAAAATCATAA 59.612 37.037 0.00 0.00 38.68 1.90
3207 3348 8.627208 ATGGTATAGGAGCACAAAATCATAAG 57.373 34.615 0.00 0.00 38.68 1.73
3208 3349 7.573710 TGGTATAGGAGCACAAAATCATAAGT 58.426 34.615 0.00 0.00 0.00 2.24
3209 3350 8.710239 TGGTATAGGAGCACAAAATCATAAGTA 58.290 33.333 0.00 0.00 0.00 2.24
3210 3351 9.209175 GGTATAGGAGCACAAAATCATAAGTAG 57.791 37.037 0.00 0.00 0.00 2.57
3211 3352 9.982651 GTATAGGAGCACAAAATCATAAGTAGA 57.017 33.333 0.00 0.00 0.00 2.59
3213 3354 7.617041 AGGAGCACAAAATCATAAGTAGAAC 57.383 36.000 0.00 0.00 0.00 3.01
3214 3355 6.313905 AGGAGCACAAAATCATAAGTAGAACG 59.686 38.462 0.00 0.00 0.00 3.95
3215 3356 5.869350 AGCACAAAATCATAAGTAGAACGC 58.131 37.500 0.00 0.00 0.00 4.84
3216 3357 5.411361 AGCACAAAATCATAAGTAGAACGCA 59.589 36.000 0.00 0.00 0.00 5.24
3217 3358 5.508224 GCACAAAATCATAAGTAGAACGCAC 59.492 40.000 0.00 0.00 0.00 5.34
3218 3359 6.598525 CACAAAATCATAAGTAGAACGCACA 58.401 36.000 0.00 0.00 0.00 4.57
3219 3360 7.243487 CACAAAATCATAAGTAGAACGCACAT 58.757 34.615 0.00 0.00 0.00 3.21
3220 3361 7.216881 CACAAAATCATAAGTAGAACGCACATG 59.783 37.037 0.00 0.00 0.00 3.21
3221 3362 6.985188 AAATCATAAGTAGAACGCACATGT 57.015 33.333 0.00 0.00 0.00 3.21
3222 3363 6.985188 AATCATAAGTAGAACGCACATGTT 57.015 33.333 0.00 0.00 34.02 2.71
3223 3364 6.589830 ATCATAAGTAGAACGCACATGTTC 57.410 37.500 0.00 0.00 46.78 3.18
3228 3369 3.233355 GAACGCACATGTTCCCTCT 57.767 52.632 0.00 0.00 41.88 3.69
3229 3370 0.798776 GAACGCACATGTTCCCTCTG 59.201 55.000 0.00 0.00 41.88 3.35
3230 3371 0.108585 AACGCACATGTTCCCTCTGT 59.891 50.000 0.00 0.00 0.00 3.41
3231 3372 0.973632 ACGCACATGTTCCCTCTGTA 59.026 50.000 0.00 0.00 0.00 2.74
3232 3373 1.346395 ACGCACATGTTCCCTCTGTAA 59.654 47.619 0.00 0.00 0.00 2.41
3233 3374 1.732259 CGCACATGTTCCCTCTGTAAC 59.268 52.381 0.00 0.00 0.00 2.50
3234 3375 2.778299 GCACATGTTCCCTCTGTAACA 58.222 47.619 0.00 0.00 39.73 2.41
3235 3376 3.146066 GCACATGTTCCCTCTGTAACAA 58.854 45.455 0.00 0.00 38.95 2.83
3236 3377 3.568007 GCACATGTTCCCTCTGTAACAAA 59.432 43.478 0.00 0.00 38.95 2.83
3237 3378 4.037446 GCACATGTTCCCTCTGTAACAAAA 59.963 41.667 0.00 0.00 38.95 2.44
3238 3379 5.278957 GCACATGTTCCCTCTGTAACAAAAT 60.279 40.000 0.00 0.00 38.95 1.82
3239 3380 6.072175 GCACATGTTCCCTCTGTAACAAAATA 60.072 38.462 0.00 0.00 38.95 1.40
3240 3381 7.362920 GCACATGTTCCCTCTGTAACAAAATAT 60.363 37.037 0.00 0.00 38.95 1.28
3241 3382 9.173021 CACATGTTCCCTCTGTAACAAAATATA 57.827 33.333 0.00 0.00 38.95 0.86
3242 3383 9.174166 ACATGTTCCCTCTGTAACAAAATATAC 57.826 33.333 0.00 0.00 38.95 1.47
3243 3384 9.173021 CATGTTCCCTCTGTAACAAAATATACA 57.827 33.333 0.00 0.00 38.95 2.29
3244 3385 9.747898 ATGTTCCCTCTGTAACAAAATATACAA 57.252 29.630 0.00 0.00 38.95 2.41
3245 3386 9.575868 TGTTCCCTCTGTAACAAAATATACAAA 57.424 29.630 0.00 0.00 32.86 2.83
3246 3387 9.836076 GTTCCCTCTGTAACAAAATATACAAAC 57.164 33.333 0.00 0.00 32.05 2.93
3247 3388 8.259049 TCCCTCTGTAACAAAATATACAAACG 57.741 34.615 0.00 0.00 32.05 3.60
3248 3389 7.879160 TCCCTCTGTAACAAAATATACAAACGT 59.121 33.333 0.00 0.00 32.05 3.99
3249 3390 8.173130 CCCTCTGTAACAAAATATACAAACGTC 58.827 37.037 0.00 0.00 32.05 4.34
3250 3391 8.932791 CCTCTGTAACAAAATATACAAACGTCT 58.067 33.333 0.00 0.00 32.05 4.18
3271 3412 9.790389 ACGTCTTATATTTTGTTACAGAGAGAG 57.210 33.333 0.00 0.00 0.00 3.20
3272 3413 9.790389 CGTCTTATATTTTGTTACAGAGAGAGT 57.210 33.333 0.00 0.00 0.00 3.24
3280 3421 8.607441 TTTTGTTACAGAGAGAGTACGTAGTA 57.393 34.615 2.11 0.00 45.11 1.82
3297 3438 7.154435 ACGTAGTAATAAAGTGCTTCTCTCA 57.846 36.000 0.00 0.00 41.94 3.27
3298 3439 7.028361 ACGTAGTAATAAAGTGCTTCTCTCAC 58.972 38.462 0.00 0.00 41.94 3.51
3299 3440 7.027760 CGTAGTAATAAAGTGCTTCTCTCACA 58.972 38.462 0.00 0.00 36.93 3.58
3300 3441 7.541091 CGTAGTAATAAAGTGCTTCTCTCACAA 59.459 37.037 0.00 0.00 36.93 3.33
3301 3442 7.897575 AGTAATAAAGTGCTTCTCTCACAAG 57.102 36.000 0.00 0.00 36.93 3.16
3302 3443 5.619625 AATAAAGTGCTTCTCTCACAAGC 57.380 39.130 0.00 0.00 45.59 4.01
3303 3444 2.926778 AAGTGCTTCTCTCACAAGCT 57.073 45.000 6.03 0.00 45.59 3.74
3304 3445 2.926778 AGTGCTTCTCTCACAAGCTT 57.073 45.000 0.00 0.00 45.59 3.74
3305 3446 3.205784 AGTGCTTCTCTCACAAGCTTT 57.794 42.857 0.00 0.00 45.59 3.51
3306 3447 2.877168 AGTGCTTCTCTCACAAGCTTTG 59.123 45.455 0.00 0.00 45.59 2.77
3307 3448 2.874701 GTGCTTCTCTCACAAGCTTTGA 59.125 45.455 0.00 3.72 45.59 2.69
3308 3449 3.059051 GTGCTTCTCTCACAAGCTTTGAG 60.059 47.826 22.36 22.36 45.59 3.02
3309 3450 3.137533 GCTTCTCTCACAAGCTTTGAGT 58.862 45.455 24.93 9.49 42.63 3.41
3310 3451 4.202253 TGCTTCTCTCACAAGCTTTGAGTA 60.202 41.667 24.93 17.20 45.59 2.59
3311 3452 4.752101 GCTTCTCTCACAAGCTTTGAGTAA 59.248 41.667 24.93 20.68 42.63 2.24
3312 3453 5.411053 GCTTCTCTCACAAGCTTTGAGTAAT 59.589 40.000 24.93 0.00 42.63 1.89
3313 3454 6.591834 GCTTCTCTCACAAGCTTTGAGTAATA 59.408 38.462 24.93 13.41 42.63 0.98
3314 3455 7.118390 GCTTCTCTCACAAGCTTTGAGTAATAA 59.882 37.037 24.93 17.59 42.63 1.40
3315 3456 9.160496 CTTCTCTCACAAGCTTTGAGTAATAAT 57.840 33.333 24.93 0.00 41.22 1.28
3316 3457 8.484641 TCTCTCACAAGCTTTGAGTAATAATG 57.515 34.615 24.93 5.59 41.22 1.90
3317 3458 8.314021 TCTCTCACAAGCTTTGAGTAATAATGA 58.686 33.333 24.93 15.43 41.22 2.57
3318 3459 8.846943 TCTCACAAGCTTTGAGTAATAATGAA 57.153 30.769 24.93 10.30 41.22 2.57
3319 3460 9.453572 TCTCACAAGCTTTGAGTAATAATGAAT 57.546 29.630 24.93 0.00 41.22 2.57
3369 3510 3.915437 ACAAGTTACAAATTGCCGAGG 57.085 42.857 2.29 0.00 37.49 4.63
3370 3511 2.556622 ACAAGTTACAAATTGCCGAGGG 59.443 45.455 2.29 0.00 37.49 4.30
3395 3536 7.655236 CAATTCTTGCATTTGGACAACATAA 57.345 32.000 0.00 0.00 0.00 1.90
3396 3537 8.259049 CAATTCTTGCATTTGGACAACATAAT 57.741 30.769 0.00 0.00 0.00 1.28
3397 3538 8.723311 CAATTCTTGCATTTGGACAACATAATT 58.277 29.630 0.00 0.00 0.00 1.40
3398 3539 9.941325 AATTCTTGCATTTGGACAACATAATTA 57.059 25.926 0.00 0.00 0.00 1.40
3399 3540 8.984891 TTCTTGCATTTGGACAACATAATTAG 57.015 30.769 0.00 0.00 0.00 1.73
3400 3541 7.546358 TCTTGCATTTGGACAACATAATTAGG 58.454 34.615 0.00 0.00 0.00 2.69
3401 3542 7.395772 TCTTGCATTTGGACAACATAATTAGGA 59.604 33.333 3.76 0.00 0.00 2.94
3402 3543 7.099266 TGCATTTGGACAACATAATTAGGAG 57.901 36.000 3.76 0.00 0.00 3.69
3403 3544 6.889177 TGCATTTGGACAACATAATTAGGAGA 59.111 34.615 3.76 0.00 0.00 3.71
3404 3545 7.560991 TGCATTTGGACAACATAATTAGGAGAT 59.439 33.333 3.76 0.00 0.00 2.75
3405 3546 8.416329 GCATTTGGACAACATAATTAGGAGATT 58.584 33.333 3.76 0.00 0.00 2.40
3406 3547 9.740239 CATTTGGACAACATAATTAGGAGATTG 57.260 33.333 3.76 1.12 0.00 2.67
3407 3548 7.880160 TTGGACAACATAATTAGGAGATTGG 57.120 36.000 3.76 0.00 0.00 3.16
3408 3549 6.364701 TGGACAACATAATTAGGAGATTGGG 58.635 40.000 3.76 0.00 0.00 4.12
3409 3550 6.159575 TGGACAACATAATTAGGAGATTGGGA 59.840 38.462 3.76 0.00 0.00 4.37
3410 3551 7.147141 TGGACAACATAATTAGGAGATTGGGAT 60.147 37.037 3.76 0.00 0.00 3.85
3411 3552 8.383175 GGACAACATAATTAGGAGATTGGGATA 58.617 37.037 3.76 0.00 0.00 2.59
3412 3553 9.793259 GACAACATAATTAGGAGATTGGGATAA 57.207 33.333 3.76 0.00 0.00 1.75
3434 3575 9.676861 GATAATATCCATGATCACCTCAAATCA 57.323 33.333 0.00 0.00 37.44 2.57
3436 3577 8.771521 AATATCCATGATCACCTCAAATCAAA 57.228 30.769 0.00 0.00 37.44 2.69
3437 3578 8.951614 ATATCCATGATCACCTCAAATCAAAT 57.048 30.769 0.00 0.00 37.44 2.32
3438 3579 7.670605 ATCCATGATCACCTCAAATCAAATT 57.329 32.000 0.00 0.00 37.44 1.82
3439 3580 7.484993 TCCATGATCACCTCAAATCAAATTT 57.515 32.000 0.00 0.00 37.44 1.82
3447 3588 3.865446 CTCAAATCAAATTTGGGGAGGC 58.135 45.455 17.90 0.00 44.94 4.70
3448 3589 2.989909 CAAATCAAATTTGGGGAGGCC 58.010 47.619 17.90 0.00 44.44 5.19
3449 3590 2.573009 CAAATCAAATTTGGGGAGGCCT 59.427 45.455 17.90 3.86 44.44 5.19
3450 3591 2.647846 ATCAAATTTGGGGAGGCCTT 57.352 45.000 17.90 0.00 0.00 4.35
3451 3592 1.643310 TCAAATTTGGGGAGGCCTTG 58.357 50.000 17.90 0.00 0.00 3.61
3452 3593 1.132881 TCAAATTTGGGGAGGCCTTGT 60.133 47.619 17.90 0.00 0.00 3.16
3453 3594 1.276138 CAAATTTGGGGAGGCCTTGTC 59.724 52.381 6.77 0.00 0.00 3.18
3454 3595 0.252239 AATTTGGGGAGGCCTTGTCC 60.252 55.000 6.77 9.97 0.00 4.02
3455 3596 1.149133 ATTTGGGGAGGCCTTGTCCT 61.149 55.000 6.77 0.00 39.67 3.85
3456 3597 0.476808 TTTGGGGAGGCCTTGTCCTA 60.477 55.000 6.77 4.55 36.38 2.94
3457 3598 0.253630 TTGGGGAGGCCTTGTCCTAT 60.254 55.000 6.77 0.00 36.38 2.57
3458 3599 0.988145 TGGGGAGGCCTTGTCCTATG 60.988 60.000 6.77 0.00 36.38 2.23
3459 3600 0.694444 GGGGAGGCCTTGTCCTATGA 60.694 60.000 6.77 0.00 36.38 2.15
3460 3601 0.470341 GGGAGGCCTTGTCCTATGAC 59.530 60.000 6.77 0.00 42.12 3.06
3461 3602 0.470341 GGAGGCCTTGTCCTATGACC 59.530 60.000 6.77 0.00 41.01 4.02
3462 3603 1.501582 GAGGCCTTGTCCTATGACCT 58.498 55.000 6.77 0.00 41.01 3.85
3463 3604 1.414550 GAGGCCTTGTCCTATGACCTC 59.585 57.143 6.77 0.00 41.01 3.85
3464 3605 1.008938 AGGCCTTGTCCTATGACCTCT 59.991 52.381 0.00 0.00 41.01 3.69
3465 3606 1.139853 GGCCTTGTCCTATGACCTCTG 59.860 57.143 0.00 0.00 41.01 3.35
3466 3607 2.111384 GCCTTGTCCTATGACCTCTGA 58.889 52.381 0.00 0.00 41.01 3.27
3467 3608 2.501723 GCCTTGTCCTATGACCTCTGAA 59.498 50.000 0.00 0.00 41.01 3.02
3468 3609 3.055094 GCCTTGTCCTATGACCTCTGAAA 60.055 47.826 0.00 0.00 41.01 2.69
3469 3610 4.565652 GCCTTGTCCTATGACCTCTGAAAA 60.566 45.833 0.00 0.00 41.01 2.29
3470 3611 4.938226 CCTTGTCCTATGACCTCTGAAAAC 59.062 45.833 0.00 0.00 41.01 2.43
3471 3612 4.553330 TGTCCTATGACCTCTGAAAACC 57.447 45.455 0.00 0.00 41.01 3.27
3472 3613 3.263425 TGTCCTATGACCTCTGAAAACCC 59.737 47.826 0.00 0.00 41.01 4.11
3473 3614 3.263425 GTCCTATGACCTCTGAAAACCCA 59.737 47.826 0.00 0.00 35.34 4.51
3474 3615 3.913799 TCCTATGACCTCTGAAAACCCAA 59.086 43.478 0.00 0.00 0.00 4.12
3475 3616 4.540099 TCCTATGACCTCTGAAAACCCAAT 59.460 41.667 0.00 0.00 0.00 3.16
3476 3617 5.015178 TCCTATGACCTCTGAAAACCCAATT 59.985 40.000 0.00 0.00 0.00 2.32
3477 3618 5.358160 CCTATGACCTCTGAAAACCCAATTC 59.642 44.000 0.00 0.00 0.00 2.17
3478 3619 4.453480 TGACCTCTGAAAACCCAATTCT 57.547 40.909 0.00 0.00 0.00 2.40
3479 3620 5.576563 TGACCTCTGAAAACCCAATTCTA 57.423 39.130 0.00 0.00 0.00 2.10
3480 3621 5.947663 TGACCTCTGAAAACCCAATTCTAA 58.052 37.500 0.00 0.00 0.00 2.10
3481 3622 6.369629 TGACCTCTGAAAACCCAATTCTAAA 58.630 36.000 0.00 0.00 0.00 1.85
3482 3623 7.010160 TGACCTCTGAAAACCCAATTCTAAAT 58.990 34.615 0.00 0.00 0.00 1.40
3483 3624 7.039784 TGACCTCTGAAAACCCAATTCTAAATG 60.040 37.037 0.00 0.00 0.00 2.32
3484 3625 6.782494 ACCTCTGAAAACCCAATTCTAAATGT 59.218 34.615 0.00 0.00 0.00 2.71
3485 3626 7.290014 ACCTCTGAAAACCCAATTCTAAATGTT 59.710 33.333 0.00 0.00 0.00 2.71
3486 3627 7.599998 CCTCTGAAAACCCAATTCTAAATGTTG 59.400 37.037 0.00 0.00 0.00 3.33
3487 3628 7.441017 TCTGAAAACCCAATTCTAAATGTTGG 58.559 34.615 0.00 0.00 41.57 3.77
3495 3636 7.408756 CCAATTCTAAATGTTGGGATGAAGA 57.591 36.000 0.00 0.00 38.93 2.87
3496 3637 8.015185 CCAATTCTAAATGTTGGGATGAAGAT 57.985 34.615 0.00 0.00 38.93 2.40
3497 3638 9.135189 CCAATTCTAAATGTTGGGATGAAGATA 57.865 33.333 0.00 0.00 38.93 1.98
3505 3646 9.927081 AAATGTTGGGATGAAGATAAGATTAGT 57.073 29.630 0.00 0.00 0.00 2.24
3506 3647 8.915057 ATGTTGGGATGAAGATAAGATTAGTG 57.085 34.615 0.00 0.00 0.00 2.74
3507 3648 7.861629 TGTTGGGATGAAGATAAGATTAGTGT 58.138 34.615 0.00 0.00 0.00 3.55
3508 3649 7.987458 TGTTGGGATGAAGATAAGATTAGTGTC 59.013 37.037 0.00 0.00 0.00 3.67
3509 3650 7.921041 TGGGATGAAGATAAGATTAGTGTCT 57.079 36.000 0.00 0.00 0.00 3.41
3510 3651 9.434275 TTGGGATGAAGATAAGATTAGTGTCTA 57.566 33.333 0.00 0.00 0.00 2.59
3511 3652 9.607333 TGGGATGAAGATAAGATTAGTGTCTAT 57.393 33.333 0.00 0.00 0.00 1.98
3566 3707 6.432607 ACATTCTTGTCATAGTGCTGATTG 57.567 37.500 0.00 0.00 0.00 2.67
3567 3708 4.952262 TTCTTGTCATAGTGCTGATTGC 57.048 40.909 0.00 0.00 43.25 3.56
3580 3721 4.005487 GCTGATTGCAGAGATATGGACT 57.995 45.455 0.00 0.00 45.17 3.85
3581 3722 3.995705 GCTGATTGCAGAGATATGGACTC 59.004 47.826 0.00 0.00 45.17 3.36
3582 3723 4.502777 GCTGATTGCAGAGATATGGACTCA 60.503 45.833 0.00 0.00 45.17 3.41
3583 3724 5.795972 CTGATTGCAGAGATATGGACTCAT 58.204 41.667 0.00 0.00 45.17 2.90
3584 3725 6.573876 GCTGATTGCAGAGATATGGACTCATA 60.574 42.308 0.00 0.00 45.17 2.15
3585 3726 6.695429 TGATTGCAGAGATATGGACTCATAC 58.305 40.000 0.00 0.00 38.53 2.39
3586 3727 6.496218 TGATTGCAGAGATATGGACTCATACT 59.504 38.462 0.00 0.00 38.53 2.12
3587 3728 5.973899 TGCAGAGATATGGACTCATACTC 57.026 43.478 0.00 0.00 38.53 2.59
3588 3729 4.769488 TGCAGAGATATGGACTCATACTCC 59.231 45.833 0.00 0.00 38.53 3.85
3589 3730 5.016173 GCAGAGATATGGACTCATACTCCT 58.984 45.833 0.00 0.00 38.53 3.69
3590 3731 6.184068 GCAGAGATATGGACTCATACTCCTA 58.816 44.000 0.00 0.00 38.53 2.94
3591 3732 6.661377 GCAGAGATATGGACTCATACTCCTAA 59.339 42.308 0.00 0.00 38.53 2.69
3592 3733 7.341769 GCAGAGATATGGACTCATACTCCTAAT 59.658 40.741 0.00 0.00 38.53 1.73
3593 3734 8.685427 CAGAGATATGGACTCATACTCCTAATG 58.315 40.741 0.00 0.00 38.53 1.90
3594 3735 7.341769 AGAGATATGGACTCATACTCCTAATGC 59.658 40.741 0.00 0.00 38.53 3.56
3595 3736 7.188381 AGATATGGACTCATACTCCTAATGCT 58.812 38.462 0.00 0.00 38.53 3.79
3596 3737 4.944619 TGGACTCATACTCCTAATGCTG 57.055 45.455 0.00 0.00 0.00 4.41
3597 3738 4.290093 TGGACTCATACTCCTAATGCTGT 58.710 43.478 0.00 0.00 0.00 4.40
3598 3739 4.716784 TGGACTCATACTCCTAATGCTGTT 59.283 41.667 0.00 0.00 0.00 3.16
3599 3740 5.189736 TGGACTCATACTCCTAATGCTGTTT 59.810 40.000 0.00 0.00 0.00 2.83
3600 3741 5.525378 GGACTCATACTCCTAATGCTGTTTG 59.475 44.000 0.00 0.00 0.00 2.93
3601 3742 4.878397 ACTCATACTCCTAATGCTGTTTGC 59.122 41.667 0.00 0.00 43.25 3.68
3611 3752 3.467776 GCTGTTTGCACCCCAAAAA 57.532 47.368 0.00 0.00 44.48 1.94
3612 3753 1.298602 GCTGTTTGCACCCCAAAAAG 58.701 50.000 0.00 2.39 46.94 2.27
3613 3754 1.406751 GCTGTTTGCACCCCAAAAAGT 60.407 47.619 7.55 0.00 46.25 2.66
3620 3761 1.454847 ACCCCAAAAAGTGCGAGCA 60.455 52.632 0.00 0.00 0.00 4.26
3632 3773 2.049156 CGAGCACGAGCAACCAGA 60.049 61.111 7.77 0.00 45.49 3.86
3633 3774 1.664649 CGAGCACGAGCAACCAGAA 60.665 57.895 7.77 0.00 45.49 3.02
3634 3775 1.862806 GAGCACGAGCAACCAGAAC 59.137 57.895 7.77 0.00 45.49 3.01
3635 3776 0.880278 GAGCACGAGCAACCAGAACA 60.880 55.000 7.77 0.00 45.49 3.18
3636 3777 1.160329 AGCACGAGCAACCAGAACAC 61.160 55.000 7.77 0.00 45.49 3.32
3637 3778 1.436195 GCACGAGCAACCAGAACACA 61.436 55.000 0.00 0.00 41.58 3.72
3638 3779 1.229428 CACGAGCAACCAGAACACAT 58.771 50.000 0.00 0.00 0.00 3.21
3639 3780 2.412870 CACGAGCAACCAGAACACATA 58.587 47.619 0.00 0.00 0.00 2.29
3640 3781 2.157668 CACGAGCAACCAGAACACATAC 59.842 50.000 0.00 0.00 0.00 2.39
3641 3782 1.390123 CGAGCAACCAGAACACATACG 59.610 52.381 0.00 0.00 0.00 3.06
3642 3783 2.683968 GAGCAACCAGAACACATACGA 58.316 47.619 0.00 0.00 0.00 3.43
3643 3784 3.064207 GAGCAACCAGAACACATACGAA 58.936 45.455 0.00 0.00 0.00 3.85
3644 3785 2.806244 AGCAACCAGAACACATACGAAC 59.194 45.455 0.00 0.00 0.00 3.95
3648 3789 3.135994 ACCAGAACACATACGAACAACC 58.864 45.455 0.00 0.00 0.00 3.77
3673 3814 9.238368 CCCAAACTAGTTCAACCAAATAGATAA 57.762 33.333 8.95 0.00 36.37 1.75
3711 3852 7.709269 TCAACGATACAAATAGCATAGTTCC 57.291 36.000 0.00 0.00 0.00 3.62
3713 3854 7.766738 TCAACGATACAAATAGCATAGTTCCAA 59.233 33.333 0.00 0.00 0.00 3.53
3714 3855 7.715265 ACGATACAAATAGCATAGTTCCAAG 57.285 36.000 0.00 0.00 0.00 3.61
3718 3859 6.588719 ACAAATAGCATAGTTCCAAGCAAA 57.411 33.333 0.00 0.00 0.00 3.68
3719 3860 6.624423 ACAAATAGCATAGTTCCAAGCAAAG 58.376 36.000 0.00 0.00 0.00 2.77
3720 3861 6.434028 ACAAATAGCATAGTTCCAAGCAAAGA 59.566 34.615 0.00 0.00 0.00 2.52
3721 3862 6.690194 AATAGCATAGTTCCAAGCAAAGAG 57.310 37.500 0.00 0.00 0.00 2.85
3861 4036 3.005554 CGTCAAAGAATGATGCCTGTCT 58.994 45.455 0.00 0.00 40.97 3.41
3865 4040 4.637534 TCAAAGAATGATGCCTGTCTTAGC 59.362 41.667 0.00 0.00 31.50 3.09
3901 4076 3.292936 AGTGCCTTCCGACGACGT 61.293 61.111 0.00 0.00 37.88 4.34
3930 4105 3.936203 TTCCGCGAGCCACCTTGT 61.936 61.111 8.23 0.00 0.00 3.16
4102 4277 1.774217 TGGAGGGGCAAGTTCCTGT 60.774 57.895 0.00 0.00 32.74 4.00
4141 4316 2.009042 GCGTCCTGAAAGTCCATCTGG 61.009 57.143 0.00 0.00 37.28 3.86
4143 4318 1.630878 GTCCTGAAAGTCCATCTGGGT 59.369 52.381 0.00 0.00 36.76 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.917760 GGAGATCCACCTCGCCCG 61.918 72.222 0.00 0.00 34.08 6.13
60 61 1.207791 GGGCAGAAGAAGGAGATCCA 58.792 55.000 0.92 0.00 38.89 3.41
61 62 0.472044 GGGGCAGAAGAAGGAGATCC 59.528 60.000 0.00 0.00 0.00 3.36
221 233 4.504916 CGTCTCCTCCAGCGCCAG 62.505 72.222 2.29 0.00 0.00 4.85
251 263 2.179547 CGCCCGCATTGATAGCACA 61.180 57.895 0.00 0.00 0.00 4.57
472 530 2.747443 TTTGCGGGAGTCCACACCA 61.747 57.895 12.30 0.00 0.00 4.17
477 535 2.747686 GAGGTTTGCGGGAGTCCA 59.252 61.111 12.30 0.00 0.00 4.02
556 624 2.047655 GTCATCCAACGCGGTCCA 60.048 61.111 12.47 0.00 35.57 4.02
595 664 2.341101 GCCGACTCTCGAACCTCCA 61.341 63.158 0.00 0.00 43.74 3.86
603 672 1.994507 ATCTCCAACGCCGACTCTCG 61.995 60.000 0.00 0.00 40.07 4.04
607 676 2.125512 GCATCTCCAACGCCGACT 60.126 61.111 0.00 0.00 0.00 4.18
642 711 7.415095 GCAAAAAGGACAAAGCCTGTAAATTTT 60.415 33.333 0.00 0.00 38.84 1.82
714 783 6.537660 TCAGTCAGCAATCACATCTTCATAAG 59.462 38.462 0.00 0.00 0.00 1.73
771 841 1.326548 GTTGCGTTTCGAGTTGACTGT 59.673 47.619 0.00 0.00 0.00 3.55
957 1029 5.424121 TTCTTCAGCTAGCTTTGTGTTTC 57.576 39.130 16.46 0.00 0.00 2.78
1010 1108 0.253327 GGAGGGTGCCTTCGATTCTT 59.747 55.000 0.00 0.00 31.76 2.52
1011 1109 0.618968 AGGAGGGTGCCTTCGATTCT 60.619 55.000 0.00 0.00 33.46 2.40
1012 1110 0.253327 AAGGAGGGTGCCTTCGATTC 59.747 55.000 0.00 0.00 44.89 2.52
1013 1111 2.387952 AAGGAGGGTGCCTTCGATT 58.612 52.632 0.00 0.00 44.89 3.34
1021 1119 0.988063 AAGAGGAAGAAGGAGGGTGC 59.012 55.000 0.00 0.00 0.00 5.01
1022 1120 1.280421 CCAAGAGGAAGAAGGAGGGTG 59.720 57.143 0.00 0.00 36.89 4.61
1023 1121 1.132365 ACCAAGAGGAAGAAGGAGGGT 60.132 52.381 0.00 0.00 38.69 4.34
1024 1122 1.557371 GACCAAGAGGAAGAAGGAGGG 59.443 57.143 0.00 0.00 38.69 4.30
1025 1123 2.545810 AGACCAAGAGGAAGAAGGAGG 58.454 52.381 0.00 0.00 38.69 4.30
1028 1144 4.285775 AGAAGAAGACCAAGAGGAAGAAGG 59.714 45.833 0.00 0.00 38.69 3.46
1036 1152 4.624882 CGACAATGAGAAGAAGACCAAGAG 59.375 45.833 0.00 0.00 0.00 2.85
1041 1157 2.926838 GAGCGACAATGAGAAGAAGACC 59.073 50.000 0.00 0.00 0.00 3.85
1228 1345 2.990479 GAGGTCAAGGCCGGTGAT 59.010 61.111 14.36 0.89 0.00 3.06
1557 1674 2.499827 GCCGTAGCTCTCGGGGATT 61.500 63.158 24.70 0.00 46.90 3.01
1802 1919 2.023414 AAGGAACACGGTGTCGAGCA 62.023 55.000 15.09 0.00 40.11 4.26
1851 1968 1.743252 CAGGTTGCCGAGCTCCTTC 60.743 63.158 8.47 0.00 33.39 3.46
1887 2004 0.599204 GTGCGTTTTCGGAGAGGTCA 60.599 55.000 0.00 0.00 45.51 4.02
1945 2062 2.623915 GGTTGAGCAGCAGCAGGTG 61.624 63.158 3.17 3.63 45.49 4.00
1952 2069 1.239296 GCACATGAGGTTGAGCAGCA 61.239 55.000 0.00 0.00 33.96 4.41
2850 2967 3.625897 CACGGTGGCAGGACTCCA 61.626 66.667 0.00 0.00 0.00 3.86
2853 2970 4.626081 GTGCACGGTGGCAGGACT 62.626 66.667 10.60 0.00 45.96 3.85
2893 3013 4.971125 GCGCCGGAGTATGGAGGC 62.971 72.222 5.05 0.00 45.67 4.70
2950 3079 1.939785 GTAGTGCGACCGAGATGCG 60.940 63.158 0.00 0.00 40.47 4.73
2989 3118 6.183309 GTATAGCACCAAACCAAGAAAGAG 57.817 41.667 0.00 0.00 0.00 2.85
3009 3138 2.124151 ACGTACCTCCGCCGGTAT 60.124 61.111 1.63 0.00 41.31 2.73
3014 3143 1.520787 CCATTGACGTACCTCCGCC 60.521 63.158 0.00 0.00 0.00 6.13
3019 3148 1.079405 CGCCACCATTGACGTACCT 60.079 57.895 0.00 0.00 0.00 3.08
3060 3189 1.522580 GCTGCTTCTCCCGTCATCC 60.523 63.158 0.00 0.00 0.00 3.51
3063 3192 1.471829 TTGAGCTGCTTCTCCCGTCA 61.472 55.000 2.53 0.00 32.22 4.35
3076 3205 2.607892 GCTGAAACGCCGTTGAGCT 61.608 57.895 20.91 0.00 32.48 4.09
3077 3206 2.127232 GCTGAAACGCCGTTGAGC 60.127 61.111 15.76 15.76 0.00 4.26
3081 3210 3.869473 TAGCCGCTGAAACGCCGTT 62.869 57.895 2.16 0.00 0.00 4.44
3090 3231 1.273048 TCGGTAAAACTTAGCCGCTGA 59.727 47.619 2.16 0.00 43.45 4.26
3126 3267 3.733337 GATATTGTCCTCCTTGACGCAT 58.267 45.455 0.00 0.00 38.11 4.73
3144 3285 1.141019 GACTTGCTGCCCGACGATA 59.859 57.895 0.00 0.00 0.00 2.92
3153 3294 1.336125 ACTTCTTGCTTGACTTGCTGC 59.664 47.619 0.00 0.00 0.00 5.25
3163 3304 3.201290 CATCGCATCCTACTTCTTGCTT 58.799 45.455 0.00 0.00 32.97 3.91
3167 3308 5.186021 CCTATACCATCGCATCCTACTTCTT 59.814 44.000 0.00 0.00 0.00 2.52
3168 3309 4.707448 CCTATACCATCGCATCCTACTTCT 59.293 45.833 0.00 0.00 0.00 2.85
3169 3310 4.705507 TCCTATACCATCGCATCCTACTTC 59.294 45.833 0.00 0.00 0.00 3.01
3170 3311 4.673968 TCCTATACCATCGCATCCTACTT 58.326 43.478 0.00 0.00 0.00 2.24
3171 3312 4.274147 CTCCTATACCATCGCATCCTACT 58.726 47.826 0.00 0.00 0.00 2.57
3172 3313 3.181485 GCTCCTATACCATCGCATCCTAC 60.181 52.174 0.00 0.00 0.00 3.18
3173 3314 3.024547 GCTCCTATACCATCGCATCCTA 58.975 50.000 0.00 0.00 0.00 2.94
3174 3315 1.827969 GCTCCTATACCATCGCATCCT 59.172 52.381 0.00 0.00 0.00 3.24
3175 3316 1.550524 TGCTCCTATACCATCGCATCC 59.449 52.381 0.00 0.00 0.00 3.51
3176 3317 2.029020 TGTGCTCCTATACCATCGCATC 60.029 50.000 0.00 0.00 0.00 3.91
3177 3318 1.970640 TGTGCTCCTATACCATCGCAT 59.029 47.619 0.00 0.00 0.00 4.73
3178 3319 1.408969 TGTGCTCCTATACCATCGCA 58.591 50.000 0.00 0.00 0.00 5.10
3179 3320 2.526304 TTGTGCTCCTATACCATCGC 57.474 50.000 0.00 0.00 0.00 4.58
3180 3321 5.056480 TGATTTTGTGCTCCTATACCATCG 58.944 41.667 0.00 0.00 0.00 3.84
3181 3322 8.621532 TTATGATTTTGTGCTCCTATACCATC 57.378 34.615 0.00 0.00 0.00 3.51
3182 3323 8.220559 ACTTATGATTTTGTGCTCCTATACCAT 58.779 33.333 0.00 0.00 0.00 3.55
3183 3324 7.573710 ACTTATGATTTTGTGCTCCTATACCA 58.426 34.615 0.00 0.00 0.00 3.25
3184 3325 9.209175 CTACTTATGATTTTGTGCTCCTATACC 57.791 37.037 0.00 0.00 0.00 2.73
3185 3326 9.982651 TCTACTTATGATTTTGTGCTCCTATAC 57.017 33.333 0.00 0.00 0.00 1.47
3187 3328 9.331282 GTTCTACTTATGATTTTGTGCTCCTAT 57.669 33.333 0.00 0.00 0.00 2.57
3188 3329 7.491372 CGTTCTACTTATGATTTTGTGCTCCTA 59.509 37.037 0.00 0.00 0.00 2.94
3189 3330 6.313905 CGTTCTACTTATGATTTTGTGCTCCT 59.686 38.462 0.00 0.00 0.00 3.69
3190 3331 6.478588 CGTTCTACTTATGATTTTGTGCTCC 58.521 40.000 0.00 0.00 0.00 4.70
3191 3332 5.960105 GCGTTCTACTTATGATTTTGTGCTC 59.040 40.000 0.00 0.00 0.00 4.26
3192 3333 5.411361 TGCGTTCTACTTATGATTTTGTGCT 59.589 36.000 0.00 0.00 0.00 4.40
3193 3334 5.508224 GTGCGTTCTACTTATGATTTTGTGC 59.492 40.000 0.00 0.00 0.00 4.57
3194 3335 6.598525 TGTGCGTTCTACTTATGATTTTGTG 58.401 36.000 0.00 0.00 0.00 3.33
3195 3336 6.795098 TGTGCGTTCTACTTATGATTTTGT 57.205 33.333 0.00 0.00 0.00 2.83
3196 3337 7.243487 ACATGTGCGTTCTACTTATGATTTTG 58.757 34.615 0.00 0.00 0.00 2.44
3197 3338 7.377766 ACATGTGCGTTCTACTTATGATTTT 57.622 32.000 0.00 0.00 0.00 1.82
3198 3339 6.985188 ACATGTGCGTTCTACTTATGATTT 57.015 33.333 0.00 0.00 0.00 2.17
3199 3340 6.037172 GGAACATGTGCGTTCTACTTATGATT 59.963 38.462 0.00 0.00 43.92 2.57
3200 3341 5.523916 GGAACATGTGCGTTCTACTTATGAT 59.476 40.000 0.00 0.00 43.92 2.45
3201 3342 4.868171 GGAACATGTGCGTTCTACTTATGA 59.132 41.667 0.00 0.00 43.92 2.15
3202 3343 4.034048 GGGAACATGTGCGTTCTACTTATG 59.966 45.833 0.00 0.00 43.92 1.90
3203 3344 4.081087 AGGGAACATGTGCGTTCTACTTAT 60.081 41.667 0.00 0.00 43.92 1.73
3204 3345 3.259876 AGGGAACATGTGCGTTCTACTTA 59.740 43.478 0.00 0.00 43.92 2.24
3205 3346 2.038557 AGGGAACATGTGCGTTCTACTT 59.961 45.455 0.00 0.00 43.92 2.24
3206 3347 1.623811 AGGGAACATGTGCGTTCTACT 59.376 47.619 0.00 0.00 43.92 2.57
3207 3348 2.000447 GAGGGAACATGTGCGTTCTAC 59.000 52.381 0.00 0.00 43.92 2.59
3208 3349 1.899814 AGAGGGAACATGTGCGTTCTA 59.100 47.619 0.00 0.00 43.92 2.10
3209 3350 0.687354 AGAGGGAACATGTGCGTTCT 59.313 50.000 0.00 0.52 43.92 3.01
3210 3351 0.798776 CAGAGGGAACATGTGCGTTC 59.201 55.000 0.00 0.00 43.75 3.95
3211 3352 0.108585 ACAGAGGGAACATGTGCGTT 59.891 50.000 0.00 0.00 32.08 4.84
3212 3353 0.973632 TACAGAGGGAACATGTGCGT 59.026 50.000 0.00 0.00 34.74 5.24
3213 3354 1.732259 GTTACAGAGGGAACATGTGCG 59.268 52.381 0.00 0.00 34.74 5.34
3214 3355 2.778299 TGTTACAGAGGGAACATGTGC 58.222 47.619 0.00 0.00 34.74 4.57
3215 3356 5.766150 TTTTGTTACAGAGGGAACATGTG 57.234 39.130 0.00 0.00 35.57 3.21
3216 3357 9.174166 GTATATTTTGTTACAGAGGGAACATGT 57.826 33.333 0.00 0.00 35.57 3.21
3217 3358 9.173021 TGTATATTTTGTTACAGAGGGAACATG 57.827 33.333 0.00 0.00 35.57 3.21
3218 3359 9.747898 TTGTATATTTTGTTACAGAGGGAACAT 57.252 29.630 0.00 0.00 35.57 2.71
3219 3360 9.575868 TTTGTATATTTTGTTACAGAGGGAACA 57.424 29.630 0.00 0.00 33.81 3.18
3220 3361 9.836076 GTTTGTATATTTTGTTACAGAGGGAAC 57.164 33.333 0.00 0.00 30.53 3.62
3221 3362 8.723311 CGTTTGTATATTTTGTTACAGAGGGAA 58.277 33.333 0.00 0.00 30.53 3.97
3222 3363 7.879160 ACGTTTGTATATTTTGTTACAGAGGGA 59.121 33.333 0.00 0.00 30.53 4.20
3223 3364 8.036273 ACGTTTGTATATTTTGTTACAGAGGG 57.964 34.615 0.00 0.00 30.53 4.30
3224 3365 8.932791 AGACGTTTGTATATTTTGTTACAGAGG 58.067 33.333 0.00 0.00 30.53 3.69
3245 3386 9.790389 CTCTCTCTGTAACAAAATATAAGACGT 57.210 33.333 0.00 0.00 0.00 4.34
3246 3387 9.790389 ACTCTCTCTGTAACAAAATATAAGACG 57.210 33.333 0.00 0.00 0.00 4.18
3253 3394 9.224267 ACTACGTACTCTCTCTGTAACAAAATA 57.776 33.333 0.00 0.00 0.00 1.40
3254 3395 8.108551 ACTACGTACTCTCTCTGTAACAAAAT 57.891 34.615 0.00 0.00 0.00 1.82
3255 3396 7.502120 ACTACGTACTCTCTCTGTAACAAAA 57.498 36.000 0.00 0.00 0.00 2.44
3256 3397 8.607441 TTACTACGTACTCTCTCTGTAACAAA 57.393 34.615 0.00 0.00 0.00 2.83
3257 3398 8.783833 ATTACTACGTACTCTCTCTGTAACAA 57.216 34.615 0.00 0.00 0.00 2.83
3258 3399 9.875691 TTATTACTACGTACTCTCTCTGTAACA 57.124 33.333 0.00 0.00 0.00 2.41
3262 3403 8.881743 CACTTTATTACTACGTACTCTCTCTGT 58.118 37.037 0.00 0.00 0.00 3.41
3263 3404 7.851963 GCACTTTATTACTACGTACTCTCTCTG 59.148 40.741 0.00 0.00 0.00 3.35
3264 3405 7.769970 AGCACTTTATTACTACGTACTCTCTCT 59.230 37.037 0.00 0.00 0.00 3.10
3265 3406 7.918643 AGCACTTTATTACTACGTACTCTCTC 58.081 38.462 0.00 0.00 0.00 3.20
3266 3407 7.862512 AGCACTTTATTACTACGTACTCTCT 57.137 36.000 0.00 0.00 0.00 3.10
3267 3408 8.397148 AGAAGCACTTTATTACTACGTACTCTC 58.603 37.037 0.00 0.00 0.00 3.20
3268 3409 8.278729 AGAAGCACTTTATTACTACGTACTCT 57.721 34.615 0.00 0.00 0.00 3.24
3269 3410 8.397148 AGAGAAGCACTTTATTACTACGTACTC 58.603 37.037 0.00 0.00 0.00 2.59
3270 3411 8.278729 AGAGAAGCACTTTATTACTACGTACT 57.721 34.615 0.00 0.00 0.00 2.73
3271 3412 8.180267 TGAGAGAAGCACTTTATTACTACGTAC 58.820 37.037 0.00 0.00 0.00 3.67
3272 3413 8.180267 GTGAGAGAAGCACTTTATTACTACGTA 58.820 37.037 0.00 0.00 33.57 3.57
3273 3414 7.028361 GTGAGAGAAGCACTTTATTACTACGT 58.972 38.462 0.00 0.00 33.57 3.57
3274 3415 7.027760 TGTGAGAGAAGCACTTTATTACTACG 58.972 38.462 0.00 0.00 37.18 3.51
3275 3416 8.758633 TTGTGAGAGAAGCACTTTATTACTAC 57.241 34.615 0.00 0.00 37.18 2.73
3276 3417 7.545965 GCTTGTGAGAGAAGCACTTTATTACTA 59.454 37.037 0.00 0.00 44.43 1.82
3277 3418 6.370166 GCTTGTGAGAGAAGCACTTTATTACT 59.630 38.462 0.00 0.00 44.43 2.24
3278 3419 6.370166 AGCTTGTGAGAGAAGCACTTTATTAC 59.630 38.462 8.04 0.00 46.93 1.89
3279 3420 6.467677 AGCTTGTGAGAGAAGCACTTTATTA 58.532 36.000 8.04 0.00 46.93 0.98
3280 3421 5.312079 AGCTTGTGAGAGAAGCACTTTATT 58.688 37.500 8.04 0.00 46.93 1.40
3281 3422 4.904241 AGCTTGTGAGAGAAGCACTTTAT 58.096 39.130 8.04 0.00 46.93 1.40
3282 3423 4.342862 AGCTTGTGAGAGAAGCACTTTA 57.657 40.909 8.04 0.00 46.93 1.85
3283 3424 3.205784 AGCTTGTGAGAGAAGCACTTT 57.794 42.857 8.04 0.00 46.93 2.66
3284 3425 2.926778 AGCTTGTGAGAGAAGCACTT 57.073 45.000 8.04 0.00 46.93 3.16
3285 3426 2.877168 CAAAGCTTGTGAGAGAAGCACT 59.123 45.455 0.00 0.00 46.93 4.40
3286 3427 2.874701 TCAAAGCTTGTGAGAGAAGCAC 59.125 45.455 0.00 0.00 46.93 4.40
3287 3428 3.136763 CTCAAAGCTTGTGAGAGAAGCA 58.863 45.455 23.27 0.20 46.93 3.91
3288 3429 3.137533 ACTCAAAGCTTGTGAGAGAAGC 58.862 45.455 29.35 0.00 44.44 3.86
3289 3430 8.539770 TTATTACTCAAAGCTTGTGAGAGAAG 57.460 34.615 29.35 14.51 44.44 2.85
3290 3431 8.939929 CATTATTACTCAAAGCTTGTGAGAGAA 58.060 33.333 29.35 23.94 44.44 2.87
3291 3432 8.314021 TCATTATTACTCAAAGCTTGTGAGAGA 58.686 33.333 29.35 21.34 44.44 3.10
3292 3433 8.484641 TCATTATTACTCAAAGCTTGTGAGAG 57.515 34.615 29.35 22.13 44.44 3.20
3293 3434 8.846943 TTCATTATTACTCAAAGCTTGTGAGA 57.153 30.769 29.35 17.23 44.44 3.27
3343 3484 8.832521 CCTCGGCAATTTGTAACTTGTATTATA 58.167 33.333 0.00 0.00 0.00 0.98
3344 3485 7.201785 CCCTCGGCAATTTGTAACTTGTATTAT 60.202 37.037 0.00 0.00 0.00 1.28
3345 3486 6.094325 CCCTCGGCAATTTGTAACTTGTATTA 59.906 38.462 0.00 0.00 0.00 0.98
3346 3487 5.105917 CCCTCGGCAATTTGTAACTTGTATT 60.106 40.000 0.00 0.00 0.00 1.89
3347 3488 4.398044 CCCTCGGCAATTTGTAACTTGTAT 59.602 41.667 0.00 0.00 0.00 2.29
3348 3489 3.754323 CCCTCGGCAATTTGTAACTTGTA 59.246 43.478 0.00 0.00 0.00 2.41
3349 3490 2.556622 CCCTCGGCAATTTGTAACTTGT 59.443 45.455 0.00 0.00 0.00 3.16
3350 3491 3.216147 CCCTCGGCAATTTGTAACTTG 57.784 47.619 0.00 0.00 0.00 3.16
3372 3513 8.851541 AATTATGTTGTCCAAATGCAAGAATT 57.148 26.923 0.00 0.00 0.00 2.17
3373 3514 9.590451 CTAATTATGTTGTCCAAATGCAAGAAT 57.410 29.630 0.00 0.00 0.00 2.40
3374 3515 8.034215 CCTAATTATGTTGTCCAAATGCAAGAA 58.966 33.333 0.00 0.00 0.00 2.52
3375 3516 7.395772 TCCTAATTATGTTGTCCAAATGCAAGA 59.604 33.333 0.00 0.00 0.00 3.02
3376 3517 7.546358 TCCTAATTATGTTGTCCAAATGCAAG 58.454 34.615 0.00 0.00 0.00 4.01
3377 3518 7.395772 TCTCCTAATTATGTTGTCCAAATGCAA 59.604 33.333 0.00 0.00 0.00 4.08
3378 3519 6.889177 TCTCCTAATTATGTTGTCCAAATGCA 59.111 34.615 0.00 0.00 0.00 3.96
3379 3520 7.333528 TCTCCTAATTATGTTGTCCAAATGC 57.666 36.000 0.00 0.00 0.00 3.56
3380 3521 9.740239 CAATCTCCTAATTATGTTGTCCAAATG 57.260 33.333 0.00 0.00 0.00 2.32
3381 3522 8.917088 CCAATCTCCTAATTATGTTGTCCAAAT 58.083 33.333 0.00 0.00 0.00 2.32
3382 3523 7.341769 CCCAATCTCCTAATTATGTTGTCCAAA 59.658 37.037 0.00 0.00 0.00 3.28
3383 3524 6.833416 CCCAATCTCCTAATTATGTTGTCCAA 59.167 38.462 0.00 0.00 0.00 3.53
3384 3525 6.159575 TCCCAATCTCCTAATTATGTTGTCCA 59.840 38.462 0.00 0.00 0.00 4.02
3385 3526 6.601332 TCCCAATCTCCTAATTATGTTGTCC 58.399 40.000 0.00 0.00 0.00 4.02
3386 3527 9.793259 TTATCCCAATCTCCTAATTATGTTGTC 57.207 33.333 0.00 0.00 0.00 3.18
3403 3544 7.185120 TGAGGTGATCATGGATATTATCCCAAT 59.815 37.037 18.13 9.84 39.99 3.16
3404 3545 6.504989 TGAGGTGATCATGGATATTATCCCAA 59.495 38.462 18.13 3.11 39.99 4.12
3405 3546 6.031386 TGAGGTGATCATGGATATTATCCCA 58.969 40.000 18.13 7.25 39.99 4.37
3406 3547 6.566079 TGAGGTGATCATGGATATTATCCC 57.434 41.667 18.13 4.94 39.99 3.85
3407 3548 9.118300 GATTTGAGGTGATCATGGATATTATCC 57.882 37.037 14.77 14.77 40.98 2.59
3408 3549 9.676861 TGATTTGAGGTGATCATGGATATTATC 57.323 33.333 0.00 0.00 37.89 1.75
3410 3551 9.865152 TTTGATTTGAGGTGATCATGGATATTA 57.135 29.630 0.00 0.00 37.89 0.98
3411 3552 8.771521 TTTGATTTGAGGTGATCATGGATATT 57.228 30.769 0.00 0.00 37.89 1.28
3412 3553 8.951614 ATTTGATTTGAGGTGATCATGGATAT 57.048 30.769 0.00 0.00 37.89 1.63
3413 3554 8.771521 AATTTGATTTGAGGTGATCATGGATA 57.228 30.769 0.00 0.00 37.89 2.59
3414 3555 7.670605 AATTTGATTTGAGGTGATCATGGAT 57.329 32.000 0.00 0.00 37.89 3.41
3415 3556 7.484993 AAATTTGATTTGAGGTGATCATGGA 57.515 32.000 0.00 0.00 37.89 3.41
3428 3569 2.573009 AGGCCTCCCCAAATTTGATTTG 59.427 45.455 19.86 2.56 46.98 2.32
3429 3570 2.919881 AGGCCTCCCCAAATTTGATTT 58.080 42.857 19.86 0.00 35.39 2.17
3430 3571 2.573009 CAAGGCCTCCCCAAATTTGATT 59.427 45.455 19.86 0.00 35.39 2.57
3431 3572 2.190538 CAAGGCCTCCCCAAATTTGAT 58.809 47.619 19.86 0.00 35.39 2.57
3432 3573 1.132881 ACAAGGCCTCCCCAAATTTGA 60.133 47.619 19.86 0.00 35.39 2.69
3433 3574 1.276138 GACAAGGCCTCCCCAAATTTG 59.724 52.381 5.23 11.40 35.39 2.32
3434 3575 1.644509 GACAAGGCCTCCCCAAATTT 58.355 50.000 5.23 0.00 35.39 1.82
3435 3576 0.252239 GGACAAGGCCTCCCCAAATT 60.252 55.000 5.23 0.00 35.39 1.82
3436 3577 1.149133 AGGACAAGGCCTCCCCAAAT 61.149 55.000 5.23 0.00 30.76 2.32
3437 3578 0.476808 TAGGACAAGGCCTCCCCAAA 60.477 55.000 5.23 0.00 39.50 3.28
3438 3579 0.253630 ATAGGACAAGGCCTCCCCAA 60.254 55.000 5.23 0.00 39.50 4.12
3439 3580 0.988145 CATAGGACAAGGCCTCCCCA 60.988 60.000 5.23 0.00 39.50 4.96
3440 3581 0.694444 TCATAGGACAAGGCCTCCCC 60.694 60.000 5.23 7.93 39.50 4.81
3441 3582 0.470341 GTCATAGGACAAGGCCTCCC 59.530 60.000 5.23 8.34 43.73 4.30
3442 3583 0.470341 GGTCATAGGACAAGGCCTCC 59.530 60.000 5.23 2.77 46.17 4.30
3443 3584 1.414550 GAGGTCATAGGACAAGGCCTC 59.585 57.143 5.23 2.62 46.17 4.70
3444 3585 1.008938 AGAGGTCATAGGACAAGGCCT 59.991 52.381 10.08 0.00 46.17 5.19
3445 3586 1.139853 CAGAGGTCATAGGACAAGGCC 59.860 57.143 10.08 0.00 46.17 5.19
3446 3587 2.111384 TCAGAGGTCATAGGACAAGGC 58.889 52.381 10.08 0.00 46.17 4.35
3447 3588 4.826274 TTTCAGAGGTCATAGGACAAGG 57.174 45.455 10.08 0.00 46.17 3.61
3448 3589 4.938226 GGTTTTCAGAGGTCATAGGACAAG 59.062 45.833 10.08 0.00 46.17 3.16
3449 3590 4.263331 GGGTTTTCAGAGGTCATAGGACAA 60.263 45.833 10.08 0.00 46.17 3.18
3450 3591 3.263425 GGGTTTTCAGAGGTCATAGGACA 59.737 47.826 10.08 0.00 46.17 4.02
3451 3592 3.263425 TGGGTTTTCAGAGGTCATAGGAC 59.737 47.826 0.00 0.00 43.55 3.85
3452 3593 3.526899 TGGGTTTTCAGAGGTCATAGGA 58.473 45.455 0.00 0.00 0.00 2.94
3453 3594 4.301072 TTGGGTTTTCAGAGGTCATAGG 57.699 45.455 0.00 0.00 0.00 2.57
3454 3595 6.183347 AGAATTGGGTTTTCAGAGGTCATAG 58.817 40.000 0.00 0.00 0.00 2.23
3455 3596 6.139679 AGAATTGGGTTTTCAGAGGTCATA 57.860 37.500 0.00 0.00 0.00 2.15
3456 3597 5.003096 AGAATTGGGTTTTCAGAGGTCAT 57.997 39.130 0.00 0.00 0.00 3.06
3457 3598 4.453480 AGAATTGGGTTTTCAGAGGTCA 57.547 40.909 0.00 0.00 0.00 4.02
3458 3599 6.894339 TTTAGAATTGGGTTTTCAGAGGTC 57.106 37.500 0.00 0.00 0.00 3.85
3459 3600 6.782494 ACATTTAGAATTGGGTTTTCAGAGGT 59.218 34.615 0.00 0.00 0.00 3.85
3460 3601 7.232118 ACATTTAGAATTGGGTTTTCAGAGG 57.768 36.000 0.00 0.00 0.00 3.69
3461 3602 7.599998 CCAACATTTAGAATTGGGTTTTCAGAG 59.400 37.037 0.00 0.00 39.42 3.35
3462 3603 7.441017 CCAACATTTAGAATTGGGTTTTCAGA 58.559 34.615 0.00 0.00 39.42 3.27
3463 3604 7.656707 CCAACATTTAGAATTGGGTTTTCAG 57.343 36.000 0.00 0.00 39.42 3.02
3471 3612 7.408756 TCTTCATCCCAACATTTAGAATTGG 57.591 36.000 0.00 0.00 42.21 3.16
3479 3620 9.927081 ACTAATCTTATCTTCATCCCAACATTT 57.073 29.630 0.00 0.00 0.00 2.32
3480 3621 9.347240 CACTAATCTTATCTTCATCCCAACATT 57.653 33.333 0.00 0.00 0.00 2.71
3481 3622 8.497745 ACACTAATCTTATCTTCATCCCAACAT 58.502 33.333 0.00 0.00 0.00 2.71
3482 3623 7.861629 ACACTAATCTTATCTTCATCCCAACA 58.138 34.615 0.00 0.00 0.00 3.33
3483 3624 8.207545 AGACACTAATCTTATCTTCATCCCAAC 58.792 37.037 0.00 0.00 0.00 3.77
3484 3625 8.324191 AGACACTAATCTTATCTTCATCCCAA 57.676 34.615 0.00 0.00 0.00 4.12
3485 3626 7.921041 AGACACTAATCTTATCTTCATCCCA 57.079 36.000 0.00 0.00 0.00 4.37
3543 3684 5.163683 GCAATCAGCACTATGACAAGAATGT 60.164 40.000 0.00 0.00 44.79 2.71
3544 3685 5.271625 GCAATCAGCACTATGACAAGAATG 58.728 41.667 0.00 0.00 44.79 2.67
3545 3686 5.496133 GCAATCAGCACTATGACAAGAAT 57.504 39.130 0.00 0.00 44.79 2.40
3546 3687 4.952262 GCAATCAGCACTATGACAAGAA 57.048 40.909 0.00 0.00 44.79 2.52
3558 3699 8.885052 TATGAGTCCATATCTCTGCAATCAGCA 61.885 40.741 0.00 0.00 41.66 4.41
3559 3700 3.995705 GAGTCCATATCTCTGCAATCAGC 59.004 47.826 0.00 0.00 45.96 4.26
3560 3701 5.211174 TGAGTCCATATCTCTGCAATCAG 57.789 43.478 0.00 0.00 41.67 2.90
3561 3702 5.820404 ATGAGTCCATATCTCTGCAATCA 57.180 39.130 0.00 0.00 33.59 2.57
3562 3703 6.934056 AGTATGAGTCCATATCTCTGCAATC 58.066 40.000 0.00 0.00 37.56 2.67
3563 3704 6.070881 GGAGTATGAGTCCATATCTCTGCAAT 60.071 42.308 0.00 0.00 37.65 3.56
3564 3705 5.244851 GGAGTATGAGTCCATATCTCTGCAA 59.755 44.000 0.00 0.00 37.65 4.08
3565 3706 4.769488 GGAGTATGAGTCCATATCTCTGCA 59.231 45.833 0.00 0.00 37.65 4.41
3566 3707 5.016173 AGGAGTATGAGTCCATATCTCTGC 58.984 45.833 3.24 0.00 40.24 4.26
3567 3708 8.685427 CATTAGGAGTATGAGTCCATATCTCTG 58.315 40.741 3.24 0.00 40.24 3.35
3568 3709 7.341769 GCATTAGGAGTATGAGTCCATATCTCT 59.658 40.741 3.24 0.00 40.24 3.10
3569 3710 7.341769 AGCATTAGGAGTATGAGTCCATATCTC 59.658 40.741 3.24 0.00 40.24 2.75
3570 3711 7.123997 CAGCATTAGGAGTATGAGTCCATATCT 59.876 40.741 3.24 0.00 40.24 1.98
3571 3712 7.093552 ACAGCATTAGGAGTATGAGTCCATATC 60.094 40.741 3.24 0.00 40.24 1.63
3572 3713 6.728164 ACAGCATTAGGAGTATGAGTCCATAT 59.272 38.462 3.24 0.00 40.24 1.78
3573 3714 6.077993 ACAGCATTAGGAGTATGAGTCCATA 58.922 40.000 3.24 0.00 40.24 2.74
3574 3715 4.904251 ACAGCATTAGGAGTATGAGTCCAT 59.096 41.667 3.24 0.00 40.24 3.41
3575 3716 4.290093 ACAGCATTAGGAGTATGAGTCCA 58.710 43.478 3.24 0.00 40.24 4.02
3576 3717 4.946478 ACAGCATTAGGAGTATGAGTCC 57.054 45.455 0.00 0.00 38.00 3.85
3577 3718 5.007136 GCAAACAGCATTAGGAGTATGAGTC 59.993 44.000 0.00 0.00 44.79 3.36
3578 3719 4.878397 GCAAACAGCATTAGGAGTATGAGT 59.122 41.667 0.00 0.00 44.79 3.41
3579 3720 5.415415 GCAAACAGCATTAGGAGTATGAG 57.585 43.478 0.00 0.00 44.79 2.90
3593 3734 1.298602 CTTTTTGGGGTGCAAACAGC 58.701 50.000 0.00 0.00 43.74 4.40
3594 3735 2.278854 CACTTTTTGGGGTGCAAACAG 58.721 47.619 0.00 0.00 0.00 3.16
3595 3736 2.393271 CACTTTTTGGGGTGCAAACA 57.607 45.000 0.00 0.00 0.00 2.83
3601 3742 1.007387 GCTCGCACTTTTTGGGGTG 60.007 57.895 0.00 0.00 38.71 4.61
3602 3743 1.454847 TGCTCGCACTTTTTGGGGT 60.455 52.632 0.00 0.00 38.71 4.95
3603 3744 1.007387 GTGCTCGCACTTTTTGGGG 60.007 57.895 14.38 0.00 43.12 4.96
3604 3745 1.370414 CGTGCTCGCACTTTTTGGG 60.370 57.895 18.63 0.00 44.16 4.12
3605 3746 0.384725 CTCGTGCTCGCACTTTTTGG 60.385 55.000 18.63 3.65 44.16 3.28
3606 3747 0.993746 GCTCGTGCTCGCACTTTTTG 60.994 55.000 18.63 4.31 44.16 2.44
3607 3748 1.279840 GCTCGTGCTCGCACTTTTT 59.720 52.632 18.63 0.00 44.16 1.94
3608 3749 1.436195 TTGCTCGTGCTCGCACTTTT 61.436 50.000 18.63 0.00 44.16 2.27
3609 3750 1.887242 TTGCTCGTGCTCGCACTTT 60.887 52.632 18.63 0.00 44.16 2.66
3610 3751 2.280119 TTGCTCGTGCTCGCACTT 60.280 55.556 18.63 0.00 44.16 3.16
3611 3752 3.038417 GTTGCTCGTGCTCGCACT 61.038 61.111 18.63 0.00 44.16 4.40
3612 3753 4.077188 GGTTGCTCGTGCTCGCAC 62.077 66.667 11.83 11.83 43.01 5.34
3613 3754 4.600576 TGGTTGCTCGTGCTCGCA 62.601 61.111 11.19 0.00 40.48 5.10
3617 3758 1.146041 TGTTCTGGTTGCTCGTGCT 59.854 52.632 11.19 0.00 40.48 4.40
3620 3761 2.413837 GTATGTGTTCTGGTTGCTCGT 58.586 47.619 0.00 0.00 0.00 4.18
3632 3773 3.949113 AGTTTGGGTTGTTCGTATGTGTT 59.051 39.130 0.00 0.00 0.00 3.32
3633 3774 3.547746 AGTTTGGGTTGTTCGTATGTGT 58.452 40.909 0.00 0.00 0.00 3.72
3634 3775 4.753107 ACTAGTTTGGGTTGTTCGTATGTG 59.247 41.667 0.00 0.00 0.00 3.21
3635 3776 4.964593 ACTAGTTTGGGTTGTTCGTATGT 58.035 39.130 0.00 0.00 0.00 2.29
3636 3777 5.467399 TGAACTAGTTTGGGTTGTTCGTATG 59.533 40.000 10.02 0.00 39.61 2.39
3637 3778 5.613329 TGAACTAGTTTGGGTTGTTCGTAT 58.387 37.500 10.02 0.00 39.61 3.06
3638 3779 5.021033 TGAACTAGTTTGGGTTGTTCGTA 57.979 39.130 10.02 0.00 39.61 3.43
3639 3780 3.876341 TGAACTAGTTTGGGTTGTTCGT 58.124 40.909 10.02 0.00 39.61 3.85
3640 3781 4.496840 GGTTGAACTAGTTTGGGTTGTTCG 60.497 45.833 10.02 0.00 39.61 3.95
3641 3782 4.399934 TGGTTGAACTAGTTTGGGTTGTTC 59.600 41.667 10.02 0.00 37.92 3.18
3642 3783 4.345854 TGGTTGAACTAGTTTGGGTTGTT 58.654 39.130 10.02 0.00 0.00 2.83
3643 3784 3.970842 TGGTTGAACTAGTTTGGGTTGT 58.029 40.909 10.02 0.00 0.00 3.32
3644 3785 4.993029 TTGGTTGAACTAGTTTGGGTTG 57.007 40.909 10.02 0.00 0.00 3.77
3677 3818 8.774586 GCTATTTGTATCGTTGAATCTATTGGT 58.225 33.333 0.00 0.00 0.00 3.67
3678 3819 8.773645 TGCTATTTGTATCGTTGAATCTATTGG 58.226 33.333 0.00 0.00 0.00 3.16
3684 3825 9.798885 GAACTATGCTATTTGTATCGTTGAATC 57.201 33.333 0.00 0.00 29.66 2.52
3711 3852 4.531332 GACTAGTTTGTGCTCTTTGCTTG 58.469 43.478 0.00 0.00 43.37 4.01
3713 3854 3.142174 GGACTAGTTTGTGCTCTTTGCT 58.858 45.455 0.00 0.00 43.37 3.91
3714 3855 2.096218 CGGACTAGTTTGTGCTCTTTGC 60.096 50.000 0.00 0.00 43.25 3.68
3718 3859 3.762288 TGTATCGGACTAGTTTGTGCTCT 59.238 43.478 0.00 0.00 0.00 4.09
3719 3860 4.106029 TGTATCGGACTAGTTTGTGCTC 57.894 45.455 0.00 0.00 0.00 4.26
3720 3861 4.530710 TTGTATCGGACTAGTTTGTGCT 57.469 40.909 0.00 0.00 0.00 4.40
3721 3862 5.796350 ATTTGTATCGGACTAGTTTGTGC 57.204 39.130 0.00 0.00 0.00 4.57
3920 4095 0.907230 GAGAGGAGGACAAGGTGGCT 60.907 60.000 0.00 0.00 0.00 4.75
3924 4099 1.985116 GCGGAGAGGAGGACAAGGT 60.985 63.158 0.00 0.00 0.00 3.50
3930 4105 2.863019 CTTCTGGGCGGAGAGGAGGA 62.863 65.000 0.00 0.00 0.00 3.71
4043 4218 2.079020 GACCGTCAGGAACACCGTCA 62.079 60.000 0.00 0.00 41.02 4.35
4093 4268 1.302033 CGAGCAGGCACAGGAACTT 60.302 57.895 0.00 0.00 34.60 2.66
4134 4309 4.864334 GGCCTCGCACCCAGATGG 62.864 72.222 0.00 0.00 41.37 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.