Multiple sequence alignment - TraesCS5D01G517400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G517400 chr5D 100.000 2643 0 0 1 2643 539447142 539444500 0.000000e+00 4881.0
1 TraesCS5D01G517400 chr5D 93.195 1058 36 3 1 1022 423831603 423832660 0.000000e+00 1522.0
2 TraesCS5D01G517400 chr5D 100.000 42 0 0 1869 1910 277616523 277616564 7.840000e-11 78.7
3 TraesCS5D01G517400 chr5D 100.000 42 0 0 1869 1910 444298902 444298861 7.840000e-11 78.7
4 TraesCS5D01G517400 chr5D 100.000 42 0 0 1869 1910 519205604 519205645 7.840000e-11 78.7
5 TraesCS5D01G517400 chr7D 94.951 1030 40 5 1 1022 77496323 77495298 0.000000e+00 1604.0
6 TraesCS5D01G517400 chr7D 92.911 1058 39 2 1 1022 147588773 147589830 0.000000e+00 1506.0
7 TraesCS5D01G517400 chr7D 91.242 1039 54 9 21 1022 500521066 500522104 0.000000e+00 1380.0
8 TraesCS5D01G517400 chr7D 91.324 219 15 3 805 1022 26443683 26443468 1.990000e-76 296.0
9 TraesCS5D01G517400 chr1B 92.170 1060 45 13 1 1022 633307851 633306792 0.000000e+00 1463.0
10 TraesCS5D01G517400 chr3D 91.966 1058 49 2 1 1022 39169069 39168012 0.000000e+00 1450.0
11 TraesCS5D01G517400 chr3D 90.795 239 18 2 784 1022 486147564 486147798 1.530000e-82 316.0
12 TraesCS5D01G517400 chr4B 90.039 1034 90 11 1 1026 5186484 5187512 0.000000e+00 1327.0
13 TraesCS5D01G517400 chr4B 91.533 437 36 1 2207 2643 145543814 145544249 3.760000e-168 601.0
14 TraesCS5D01G517400 chr4B 100.000 42 0 0 1869 1910 277396277 277396236 7.840000e-11 78.7
15 TraesCS5D01G517400 chr7A 94.712 832 37 2 1 825 556567619 556568450 0.000000e+00 1286.0
16 TraesCS5D01G517400 chr1A 89.122 1048 82 22 1 1022 329181881 329182922 0.000000e+00 1275.0
17 TraesCS5D01G517400 chr1A 87.011 639 54 8 410 1022 10426647 10427282 0.000000e+00 693.0
18 TraesCS5D01G517400 chr1A 80.734 109 13 6 2048 2150 489352711 489352817 7.840000e-11 78.7
19 TraesCS5D01G517400 chr2D 88.396 879 60 12 160 1022 451008511 451007659 0.000000e+00 1020.0
20 TraesCS5D01G517400 chr2D 86.475 695 49 20 368 1021 593400584 593399894 0.000000e+00 721.0
21 TraesCS5D01G517400 chr2D 93.822 437 27 0 2207 2643 204511216 204511652 0.000000e+00 658.0
22 TraesCS5D01G517400 chr2D 100.000 43 0 0 1869 1911 142438137 142438095 2.180000e-11 80.5
23 TraesCS5D01G517400 chr5B 88.183 897 41 16 1017 1871 680971143 680972016 0.000000e+00 1009.0
24 TraesCS5D01G517400 chr4A 92.677 437 31 1 2207 2643 714327179 714326744 1.730000e-176 628.0
25 TraesCS5D01G517400 chr4A 90.377 239 18 3 785 1022 512021493 512021727 2.560000e-80 309.0
26 TraesCS5D01G517400 chr4A 94.531 128 7 0 1744 1871 629305201 629305074 5.770000e-47 198.0
27 TraesCS5D01G517400 chr2A 92.677 437 31 1 2207 2643 20015423 20014988 1.730000e-176 628.0
28 TraesCS5D01G517400 chr2A 92.431 436 33 0 2208 2643 2281598 2281163 8.030000e-175 623.0
29 TraesCS5D01G517400 chr5A 91.991 437 35 0 2207 2643 692043752 692043316 4.840000e-172 614.0
30 TraesCS5D01G517400 chr3A 92.202 436 30 1 2208 2643 53176137 53175706 4.840000e-172 614.0
31 TraesCS5D01G517400 chr2B 92.009 438 34 1 2207 2643 371523993 371523556 4.840000e-172 614.0
32 TraesCS5D01G517400 chr7B 91.743 436 36 0 2208 2643 111883216 111883651 8.090000e-170 606.0
33 TraesCS5D01G517400 chr1D 92.273 220 14 3 805 1022 16966794 16966576 2.560000e-80 309.0
34 TraesCS5D01G517400 chr1D 100.000 42 0 0 1869 1910 16966556 16966597 7.840000e-11 78.7
35 TraesCS5D01G517400 chr1D 100.000 42 0 0 1869 1910 440423143 440423102 7.840000e-11 78.7
36 TraesCS5D01G517400 chr1D 100.000 42 0 0 1869 1910 493698233 493698274 7.840000e-11 78.7
37 TraesCS5D01G517400 chr6A 100.000 42 0 0 1869 1910 555307872 555307831 7.840000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G517400 chr5D 539444500 539447142 2642 True 4881 4881 100.000 1 2643 1 chr5D.!!$R2 2642
1 TraesCS5D01G517400 chr5D 423831603 423832660 1057 False 1522 1522 93.195 1 1022 1 chr5D.!!$F2 1021
2 TraesCS5D01G517400 chr7D 77495298 77496323 1025 True 1604 1604 94.951 1 1022 1 chr7D.!!$R2 1021
3 TraesCS5D01G517400 chr7D 147588773 147589830 1057 False 1506 1506 92.911 1 1022 1 chr7D.!!$F1 1021
4 TraesCS5D01G517400 chr7D 500521066 500522104 1038 False 1380 1380 91.242 21 1022 1 chr7D.!!$F2 1001
5 TraesCS5D01G517400 chr1B 633306792 633307851 1059 True 1463 1463 92.170 1 1022 1 chr1B.!!$R1 1021
6 TraesCS5D01G517400 chr3D 39168012 39169069 1057 True 1450 1450 91.966 1 1022 1 chr3D.!!$R1 1021
7 TraesCS5D01G517400 chr4B 5186484 5187512 1028 False 1327 1327 90.039 1 1026 1 chr4B.!!$F1 1025
8 TraesCS5D01G517400 chr7A 556567619 556568450 831 False 1286 1286 94.712 1 825 1 chr7A.!!$F1 824
9 TraesCS5D01G517400 chr1A 329181881 329182922 1041 False 1275 1275 89.122 1 1022 1 chr1A.!!$F2 1021
10 TraesCS5D01G517400 chr1A 10426647 10427282 635 False 693 693 87.011 410 1022 1 chr1A.!!$F1 612
11 TraesCS5D01G517400 chr2D 451007659 451008511 852 True 1020 1020 88.396 160 1022 1 chr2D.!!$R2 862
12 TraesCS5D01G517400 chr2D 593399894 593400584 690 True 721 721 86.475 368 1021 1 chr2D.!!$R3 653
13 TraesCS5D01G517400 chr5B 680971143 680972016 873 False 1009 1009 88.183 1017 1871 1 chr5B.!!$F1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 2.523015 GCGTCGAAAGTAATTCTCCGA 58.477 47.619 0.0 0.0 35.79 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2043 0.031721 CGTGGCCTAATAGACGGTCC 59.968 60.0 3.32 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.918810 AATGCGAAAGAACAAGTCCTTT 57.081 36.364 0.00 0.00 35.52 3.11
77 78 2.523015 GCGTCGAAAGTAATTCTCCGA 58.477 47.619 0.00 0.00 35.79 4.55
416 418 2.579201 CGCGGTGGAGGAAGATGT 59.421 61.111 0.00 0.00 0.00 3.06
557 560 3.728373 GGGCGGAGGGATTGGTGT 61.728 66.667 0.00 0.00 0.00 4.16
593 599 3.041940 GGTGCAACGTCCGTGGAG 61.042 66.667 0.00 0.00 38.12 3.86
939 1036 4.693566 GGTGTTGGATTTTACATCACGAGA 59.306 41.667 0.00 0.00 38.69 4.04
942 1039 6.147164 GTGTTGGATTTTACATCACGAGAAGA 59.853 38.462 0.00 0.00 31.38 2.87
1022 1121 5.082251 AGACGGTCCAAAAGTTAGGTATC 57.918 43.478 4.14 0.00 0.00 2.24
1109 1208 3.378331 GAGGACGACGTGCGACGAT 62.378 63.158 20.80 8.02 46.05 3.73
1321 1422 4.719369 GGCTTCCGCGTCGTCACT 62.719 66.667 4.92 0.00 36.88 3.41
1358 1459 2.947621 CATGCATTGCGCGCACTC 60.948 61.111 36.72 24.70 46.97 3.51
1360 1461 3.391160 ATGCATTGCGCGCACTCTG 62.391 57.895 36.72 29.53 46.97 3.35
1362 1463 4.092652 CATTGCGCGCACTCTGCA 62.093 61.111 36.72 19.58 45.36 4.41
1364 1465 4.016629 TTGCGCGCACTCTGCAAG 62.017 61.111 36.72 0.00 45.36 4.01
1366 1467 3.112075 GCGCGCACTCTGCAAGTA 61.112 61.111 29.10 0.00 45.36 2.24
1368 1469 1.130613 CGCGCACTCTGCAAGTAAC 59.869 57.895 8.75 0.00 45.36 2.50
1372 1473 2.029728 GCGCACTCTGCAAGTAACTATG 59.970 50.000 0.30 0.00 45.36 2.23
1373 1474 2.604914 CGCACTCTGCAAGTAACTATGG 59.395 50.000 0.00 0.00 45.36 2.74
1410 1511 2.290464 ACGATCGTTGGTTTGGTTTGA 58.710 42.857 16.60 0.00 0.00 2.69
1413 1514 4.202070 ACGATCGTTGGTTTGGTTTGATTT 60.202 37.500 16.60 0.00 0.00 2.17
1414 1515 4.148000 CGATCGTTGGTTTGGTTTGATTTG 59.852 41.667 7.03 0.00 0.00 2.32
1415 1516 4.720649 TCGTTGGTTTGGTTTGATTTGA 57.279 36.364 0.00 0.00 0.00 2.69
1416 1517 5.269505 TCGTTGGTTTGGTTTGATTTGAT 57.730 34.783 0.00 0.00 0.00 2.57
1426 1527 2.743664 GTTTGATTTGATTTGCAGGGCC 59.256 45.455 0.00 0.00 0.00 5.80
1459 1560 2.583441 CCGTCTGGACCTGGAGCAA 61.583 63.158 0.00 0.00 37.49 3.91
1468 1569 0.980423 ACCTGGAGCAAGAGGAGAAC 59.020 55.000 0.00 0.00 33.16 3.01
1538 1650 0.109597 GGATTGCAGCCGTCAACAAG 60.110 55.000 0.00 0.00 0.00 3.16
1550 1662 2.284684 CGTCAACAAGAAGATGCGATCG 60.285 50.000 11.69 11.69 0.00 3.69
1564 1676 2.202649 CGATCGCGCATTGTCTATTG 57.797 50.000 8.75 0.00 0.00 1.90
1565 1677 1.522676 CGATCGCGCATTGTCTATTGT 59.477 47.619 8.75 0.00 0.00 2.71
1566 1678 2.408991 CGATCGCGCATTGTCTATTGTC 60.409 50.000 8.75 0.00 0.00 3.18
1567 1679 2.293677 TCGCGCATTGTCTATTGTCT 57.706 45.000 8.75 0.00 0.00 3.41
1568 1680 1.926510 TCGCGCATTGTCTATTGTCTG 59.073 47.619 8.75 0.00 0.00 3.51
1569 1681 1.593070 CGCGCATTGTCTATTGTCTGC 60.593 52.381 8.75 0.00 0.00 4.26
1570 1682 1.398041 GCGCATTGTCTATTGTCTGCA 59.602 47.619 0.30 0.00 0.00 4.41
1571 1683 2.032550 GCGCATTGTCTATTGTCTGCAT 59.967 45.455 0.30 0.00 0.00 3.96
1572 1684 3.614588 CGCATTGTCTATTGTCTGCATG 58.385 45.455 0.00 0.00 0.00 4.06
1573 1685 3.369385 GCATTGTCTATTGTCTGCATGC 58.631 45.455 11.82 11.82 0.00 4.06
1574 1686 3.066342 GCATTGTCTATTGTCTGCATGCT 59.934 43.478 20.33 0.00 0.00 3.79
1575 1687 4.598062 CATTGTCTATTGTCTGCATGCTG 58.402 43.478 20.33 18.97 0.00 4.41
1576 1688 3.339253 TGTCTATTGTCTGCATGCTGT 57.661 42.857 20.33 4.96 0.00 4.40
1577 1689 3.678289 TGTCTATTGTCTGCATGCTGTT 58.322 40.909 20.33 8.03 0.00 3.16
1578 1690 4.074259 TGTCTATTGTCTGCATGCTGTTT 58.926 39.130 20.33 7.70 0.00 2.83
1579 1691 4.083164 TGTCTATTGTCTGCATGCTGTTTG 60.083 41.667 20.33 4.23 0.00 2.93
1580 1692 4.154737 GTCTATTGTCTGCATGCTGTTTGA 59.845 41.667 20.33 6.54 0.00 2.69
1581 1693 2.780065 TTGTCTGCATGCTGTTTGAC 57.220 45.000 20.33 17.37 0.00 3.18
1590 1702 4.201841 TGCATGCTGTTTGACTGAATATCG 60.202 41.667 20.33 0.00 0.00 2.92
1616 1728 9.722056 GTAATGTACTTCTGCCAAATGATAAAG 57.278 33.333 0.00 0.00 0.00 1.85
1622 1734 8.674263 ACTTCTGCCAAATGATAAAGATCTAG 57.326 34.615 0.00 0.00 32.79 2.43
1626 1738 7.930325 TCTGCCAAATGATAAAGATCTAGTCTG 59.070 37.037 0.00 0.00 37.23 3.51
1629 1741 7.095857 GCCAAATGATAAAGATCTAGTCTGTCG 60.096 40.741 0.00 0.00 37.23 4.35
1632 1744 2.853731 AAAGATCTAGTCTGTCGCCG 57.146 50.000 0.00 0.00 37.23 6.46
1640 1757 6.877855 AGATCTAGTCTGTCGCCGTATAAATA 59.122 38.462 0.00 0.00 35.31 1.40
1644 1761 8.355169 TCTAGTCTGTCGCCGTATAAATAAAAT 58.645 33.333 0.00 0.00 0.00 1.82
1653 1770 8.938906 TCGCCGTATAAATAAAATAAATCCTCC 58.061 33.333 0.00 0.00 0.00 4.30
1654 1771 8.943002 CGCCGTATAAATAAAATAAATCCTCCT 58.057 33.333 0.00 0.00 0.00 3.69
1667 1784 9.890915 AAATAAATCCTCCTAGATAGTCTCTGT 57.109 33.333 0.00 0.00 35.28 3.41
1674 1791 6.016610 CCTCCTAGATAGTCTCTGTTGTAAGC 60.017 46.154 0.00 0.00 35.28 3.09
1682 1799 1.003839 CTGTTGTAAGCGCCCCTGA 60.004 57.895 2.29 0.00 0.00 3.86
1686 1803 1.068541 GTTGTAAGCGCCCCTGAAAAG 60.069 52.381 2.29 0.00 0.00 2.27
1720 1837 4.991776 TCCCTGTTGTTCACAATATTCCA 58.008 39.130 0.00 0.00 38.24 3.53
1725 1845 7.086376 CCTGTTGTTCACAATATTCCAAAGAG 58.914 38.462 0.00 0.00 38.24 2.85
1768 1907 7.848051 CGAGAAAACACTTTAGCTATATGCAAG 59.152 37.037 0.00 0.00 45.94 4.01
1771 1910 8.567285 AAAACACTTTAGCTATATGCAAGTCT 57.433 30.769 5.04 0.00 45.94 3.24
1798 1937 8.726988 CCCGATTTCTAAATTTGAGTAAGTCAA 58.273 33.333 0.00 0.00 43.82 3.18
1871 2013 5.129634 TGTGTTGTTTCATGGCTTCTTAGA 58.870 37.500 0.00 0.00 0.00 2.10
1872 2014 5.008613 TGTGTTGTTTCATGGCTTCTTAGAC 59.991 40.000 0.00 0.00 0.00 2.59
1873 2015 4.213270 TGTTGTTTCATGGCTTCTTAGACG 59.787 41.667 0.00 0.00 29.01 4.18
1874 2016 3.334691 TGTTTCATGGCTTCTTAGACGG 58.665 45.455 0.00 0.00 29.01 4.79
1875 2017 3.244422 TGTTTCATGGCTTCTTAGACGGT 60.244 43.478 0.00 0.00 29.01 4.83
1876 2018 2.961526 TCATGGCTTCTTAGACGGTC 57.038 50.000 0.00 0.00 29.01 4.79
1877 2019 1.480954 TCATGGCTTCTTAGACGGTCC 59.519 52.381 4.14 0.00 29.01 4.46
1878 2020 1.207089 CATGGCTTCTTAGACGGTCCA 59.793 52.381 4.14 0.00 29.01 4.02
1879 2021 1.344065 TGGCTTCTTAGACGGTCCAA 58.656 50.000 4.14 0.00 29.01 3.53
1880 2022 1.695242 TGGCTTCTTAGACGGTCCAAA 59.305 47.619 4.14 0.00 29.01 3.28
1881 2023 2.304761 TGGCTTCTTAGACGGTCCAAAT 59.695 45.455 4.14 0.00 29.01 2.32
1882 2024 2.678336 GGCTTCTTAGACGGTCCAAATG 59.322 50.000 4.14 0.00 0.00 2.32
1883 2025 3.335579 GCTTCTTAGACGGTCCAAATGT 58.664 45.455 4.14 0.00 0.00 2.71
1884 2026 4.501071 GCTTCTTAGACGGTCCAAATGTA 58.499 43.478 4.14 0.00 0.00 2.29
1885 2027 4.933400 GCTTCTTAGACGGTCCAAATGTAA 59.067 41.667 4.14 0.00 0.00 2.41
1886 2028 5.410439 GCTTCTTAGACGGTCCAAATGTAAA 59.590 40.000 4.14 0.00 0.00 2.01
1887 2029 6.072893 GCTTCTTAGACGGTCCAAATGTAAAA 60.073 38.462 4.14 0.00 0.00 1.52
1888 2030 7.520937 GCTTCTTAGACGGTCCAAATGTAAAAA 60.521 37.037 4.14 0.00 0.00 1.94
1889 2031 7.989416 TCTTAGACGGTCCAAATGTAAAAAT 57.011 32.000 4.14 0.00 0.00 1.82
1890 2032 9.504708 TTCTTAGACGGTCCAAATGTAAAAATA 57.495 29.630 4.14 0.00 0.00 1.40
1891 2033 8.938906 TCTTAGACGGTCCAAATGTAAAAATAC 58.061 33.333 4.14 0.00 0.00 1.89
1892 2034 6.505044 AGACGGTCCAAATGTAAAAATACC 57.495 37.500 4.14 0.00 0.00 2.73
1893 2035 6.243148 AGACGGTCCAAATGTAAAAATACCT 58.757 36.000 4.14 0.00 0.00 3.08
1894 2036 7.396418 AGACGGTCCAAATGTAAAAATACCTA 58.604 34.615 4.14 0.00 0.00 3.08
1895 2037 7.884354 AGACGGTCCAAATGTAAAAATACCTAA 59.116 33.333 4.14 0.00 0.00 2.69
1896 2038 7.819644 ACGGTCCAAATGTAAAAATACCTAAC 58.180 34.615 0.00 0.00 0.00 2.34
1897 2039 7.666804 ACGGTCCAAATGTAAAAATACCTAACT 59.333 33.333 0.00 0.00 0.00 2.24
1898 2040 8.517056 CGGTCCAAATGTAAAAATACCTAACTT 58.483 33.333 0.00 0.00 0.00 2.66
1906 2048 7.873910 TGTAAAAATACCTAACTTTTGGACCG 58.126 34.615 0.00 0.00 0.00 4.79
1907 2049 6.964807 AAAAATACCTAACTTTTGGACCGT 57.035 33.333 0.00 0.00 0.00 4.83
1908 2050 6.564709 AAAATACCTAACTTTTGGACCGTC 57.435 37.500 0.00 0.00 0.00 4.79
1909 2051 5.494390 AATACCTAACTTTTGGACCGTCT 57.506 39.130 0.00 0.00 0.00 4.18
1910 2052 6.610075 AATACCTAACTTTTGGACCGTCTA 57.390 37.500 0.00 0.00 0.00 2.59
1911 2053 6.803366 ATACCTAACTTTTGGACCGTCTAT 57.197 37.500 0.00 0.00 0.00 1.98
1912 2054 5.494390 ACCTAACTTTTGGACCGTCTATT 57.506 39.130 0.00 0.00 0.00 1.73
1913 2055 6.610075 ACCTAACTTTTGGACCGTCTATTA 57.390 37.500 0.00 0.00 0.00 0.98
1914 2056 6.637657 ACCTAACTTTTGGACCGTCTATTAG 58.362 40.000 0.00 0.00 0.00 1.73
1915 2057 6.047231 CCTAACTTTTGGACCGTCTATTAGG 58.953 44.000 7.32 7.32 32.55 2.69
1916 2058 3.870274 ACTTTTGGACCGTCTATTAGGC 58.130 45.455 0.00 0.00 0.00 3.93
1917 2059 2.994186 TTTGGACCGTCTATTAGGCC 57.006 50.000 0.00 0.00 0.00 5.19
1918 2060 1.868713 TTGGACCGTCTATTAGGCCA 58.131 50.000 5.01 0.00 33.87 5.36
1919 2061 1.117150 TGGACCGTCTATTAGGCCAC 58.883 55.000 5.01 0.00 31.86 5.01
1920 2062 0.031721 GGACCGTCTATTAGGCCACG 59.968 60.000 5.01 4.50 0.00 4.94
1921 2063 0.596859 GACCGTCTATTAGGCCACGC 60.597 60.000 5.01 0.00 0.00 5.34
1971 2113 4.143333 GCTCGCTAGCCACCCGAA 62.143 66.667 9.66 0.00 43.40 4.30
1972 2114 2.202756 CTCGCTAGCCACCCGAAC 60.203 66.667 9.66 0.00 0.00 3.95
1973 2115 3.718210 CTCGCTAGCCACCCGAACC 62.718 68.421 9.66 0.00 0.00 3.62
1974 2116 4.832608 CGCTAGCCACCCGAACCC 62.833 72.222 9.66 0.00 0.00 4.11
1975 2117 4.832608 GCTAGCCACCCGAACCCG 62.833 72.222 2.29 0.00 0.00 5.28
1976 2118 4.832608 CTAGCCACCCGAACCCGC 62.833 72.222 0.00 0.00 0.00 6.13
1981 2123 4.143333 CACCCGAACCCGCTCGAT 62.143 66.667 0.00 0.00 41.44 3.59
1982 2124 3.834799 ACCCGAACCCGCTCGATC 61.835 66.667 0.00 0.00 41.44 3.69
1983 2125 4.925576 CCCGAACCCGCTCGATCG 62.926 72.222 9.36 9.36 41.44 3.69
1986 2128 4.508128 GAACCCGCTCGATCGCCA 62.508 66.667 11.09 0.00 0.00 5.69
1987 2129 4.077184 AACCCGCTCGATCGCCAA 62.077 61.111 11.09 0.00 0.00 4.52
1988 2130 4.514577 ACCCGCTCGATCGCCAAG 62.515 66.667 11.09 3.87 0.00 3.61
1993 2135 4.880537 CTCGATCGCCAAGCCGCT 62.881 66.667 11.09 0.00 0.00 5.52
1994 2136 4.451150 TCGATCGCCAAGCCGCTT 62.451 61.111 11.09 0.00 0.00 4.68
1995 2137 3.929948 CGATCGCCAAGCCGCTTC 61.930 66.667 0.26 0.00 0.00 3.86
1996 2138 3.929948 GATCGCCAAGCCGCTTCG 61.930 66.667 1.56 5.25 0.00 3.79
2002 2144 3.793144 CAAGCCGCTTCGCCAGTC 61.793 66.667 1.56 0.00 0.00 3.51
2057 2199 4.421479 CTCGCCAACTCGCCTCGT 62.421 66.667 0.00 0.00 0.00 4.18
2058 2200 4.415332 TCGCCAACTCGCCTCGTC 62.415 66.667 0.00 0.00 0.00 4.20
2059 2201 4.717629 CGCCAACTCGCCTCGTCA 62.718 66.667 0.00 0.00 0.00 4.35
2060 2202 2.811317 GCCAACTCGCCTCGTCAG 60.811 66.667 0.00 0.00 0.00 3.51
2061 2203 2.811317 CCAACTCGCCTCGTCAGC 60.811 66.667 0.00 0.00 0.00 4.26
2062 2204 2.811317 CAACTCGCCTCGTCAGCC 60.811 66.667 0.00 0.00 0.00 4.85
2063 2205 4.421479 AACTCGCCTCGTCAGCCG 62.421 66.667 0.00 0.00 38.13 5.52
2117 2259 2.181021 CGAAGCCCGTAACTCGCT 59.819 61.111 0.00 0.00 38.35 4.93
2118 2260 1.872679 CGAAGCCCGTAACTCGCTC 60.873 63.158 0.00 0.00 38.35 5.03
2119 2261 1.872679 GAAGCCCGTAACTCGCTCG 60.873 63.158 0.00 0.00 38.35 5.03
2120 2262 2.262471 GAAGCCCGTAACTCGCTCGA 62.262 60.000 0.00 0.00 38.35 4.04
2121 2263 1.664321 AAGCCCGTAACTCGCTCGAT 61.664 55.000 0.00 0.00 38.35 3.59
2122 2264 1.657794 GCCCGTAACTCGCTCGATC 60.658 63.158 0.00 0.00 38.35 3.69
2123 2265 1.368969 CCCGTAACTCGCTCGATCG 60.369 63.158 9.36 9.36 38.35 3.69
2124 2266 2.004489 CCGTAACTCGCTCGATCGC 61.004 63.158 11.09 0.00 38.35 4.58
2125 2267 2.004489 CGTAACTCGCTCGATCGCC 61.004 63.158 11.09 2.72 0.00 5.54
2126 2268 1.657794 GTAACTCGCTCGATCGCCC 60.658 63.158 11.09 2.32 0.00 6.13
2127 2269 3.177272 TAACTCGCTCGATCGCCCG 62.177 63.158 11.09 14.97 0.00 6.13
2129 2271 4.965858 CTCGCTCGATCGCCCGAC 62.966 72.222 20.58 4.70 34.56 4.79
2193 2335 4.873129 CCGTCGGACCTGCGATGG 62.873 72.222 4.91 12.37 35.37 3.51
2199 2341 4.451150 GACCTGCGATGGCGTCCA 62.451 66.667 0.14 1.01 44.10 4.02
2200 2342 4.760047 ACCTGCGATGGCGTCCAC 62.760 66.667 0.14 0.00 44.10 4.02
2287 2429 3.371063 GACTCTGCCCGTCGACCA 61.371 66.667 10.58 1.04 0.00 4.02
2288 2430 3.628280 GACTCTGCCCGTCGACCAC 62.628 68.421 10.58 0.00 0.00 4.16
2289 2431 3.374402 CTCTGCCCGTCGACCACT 61.374 66.667 10.58 0.00 0.00 4.00
2290 2432 2.915659 TCTGCCCGTCGACCACTT 60.916 61.111 10.58 0.00 0.00 3.16
2291 2433 2.738521 CTGCCCGTCGACCACTTG 60.739 66.667 10.58 0.00 0.00 3.16
2292 2434 4.980805 TGCCCGTCGACCACTTGC 62.981 66.667 10.58 6.25 0.00 4.01
2293 2435 4.681978 GCCCGTCGACCACTTGCT 62.682 66.667 10.58 0.00 0.00 3.91
2294 2436 2.738521 CCCGTCGACCACTTGCTG 60.739 66.667 10.58 0.00 0.00 4.41
2295 2437 2.029073 CCGTCGACCACTTGCTGT 59.971 61.111 10.58 0.00 0.00 4.40
2296 2438 1.594293 CCGTCGACCACTTGCTGTT 60.594 57.895 10.58 0.00 0.00 3.16
2297 2439 1.564622 CGTCGACCACTTGCTGTTG 59.435 57.895 10.58 0.00 0.00 3.33
2298 2440 1.279840 GTCGACCACTTGCTGTTGC 59.720 57.895 3.51 0.00 40.20 4.17
2299 2441 2.243957 TCGACCACTTGCTGTTGCG 61.244 57.895 0.00 0.00 43.34 4.85
2300 2442 2.050985 GACCACTTGCTGTTGCGC 60.051 61.111 0.00 0.00 43.34 6.09
2301 2443 3.862063 GACCACTTGCTGTTGCGCG 62.862 63.158 0.00 0.00 43.34 6.86
2302 2444 4.688419 CCACTTGCTGTTGCGCGG 62.688 66.667 8.83 0.00 43.34 6.46
2303 2445 4.688419 CACTTGCTGTTGCGCGGG 62.688 66.667 8.83 0.00 43.34 6.13
2344 2486 4.814294 GGCTCCCGCGTACTGGTG 62.814 72.222 4.92 0.66 36.88 4.17
2345 2487 4.814294 GCTCCCGCGTACTGGTGG 62.814 72.222 4.92 0.00 37.32 4.61
2350 2492 4.814294 CGCGTACTGGTGGGGCTC 62.814 72.222 0.00 0.00 0.00 4.70
2351 2493 4.814294 GCGTACTGGTGGGGCTCG 62.814 72.222 0.00 0.00 0.00 5.03
2352 2494 3.379445 CGTACTGGTGGGGCTCGT 61.379 66.667 0.00 0.00 0.00 4.18
2353 2495 2.577593 GTACTGGTGGGGCTCGTC 59.422 66.667 0.00 0.00 0.00 4.20
2354 2496 2.118732 TACTGGTGGGGCTCGTCA 59.881 61.111 0.00 0.00 0.00 4.35
2355 2497 1.982395 TACTGGTGGGGCTCGTCAG 60.982 63.158 5.40 5.40 0.00 3.51
2356 2498 4.767255 CTGGTGGGGCTCGTCAGC 62.767 72.222 0.00 0.00 46.06 4.26
2365 2507 4.383861 CTCGTCAGCAGGCCAGCA 62.384 66.667 23.38 0.00 36.85 4.41
2366 2508 4.383861 TCGTCAGCAGGCCAGCAG 62.384 66.667 23.38 15.02 36.85 4.24
2368 2510 4.341783 GTCAGCAGGCCAGCAGGT 62.342 66.667 23.38 2.99 37.19 4.00
2369 2511 3.573229 TCAGCAGGCCAGCAGGTT 61.573 61.111 23.38 0.00 37.19 3.50
2370 2512 2.599578 CAGCAGGCCAGCAGGTTT 60.600 61.111 23.38 0.00 37.19 3.27
2371 2513 2.199535 AGCAGGCCAGCAGGTTTT 59.800 55.556 23.38 0.00 37.19 2.43
2372 2514 1.458209 AGCAGGCCAGCAGGTTTTT 60.458 52.632 23.38 0.00 37.19 1.94
2373 2515 1.005748 GCAGGCCAGCAGGTTTTTC 60.006 57.895 16.36 0.00 37.19 2.29
2374 2516 1.667722 CAGGCCAGCAGGTTTTTCC 59.332 57.895 5.01 0.00 37.19 3.13
2375 2517 1.903404 AGGCCAGCAGGTTTTTCCG 60.903 57.895 5.01 0.00 41.99 4.30
2376 2518 2.650778 GCCAGCAGGTTTTTCCGG 59.349 61.111 0.00 0.00 41.99 5.14
2380 2522 4.050934 GCAGGTTTTTCCGGCGGG 62.051 66.667 27.98 8.25 46.17 6.13
2381 2523 4.050934 CAGGTTTTTCCGGCGGGC 62.051 66.667 27.98 11.10 41.99 6.13
2384 2526 3.378602 GTTTTTCCGGCGGGCCAT 61.379 61.111 27.98 0.00 35.37 4.40
2385 2527 3.065567 TTTTTCCGGCGGGCCATC 61.066 61.111 27.98 0.00 35.37 3.51
2407 2549 4.814294 CTACCCGGCACCGCAGTC 62.814 72.222 2.83 0.00 38.24 3.51
2428 2570 2.922234 GCCAGGGCTGCTTCCTAT 59.078 61.111 2.30 0.00 38.26 2.57
2429 2571 2.145865 GCCAGGGCTGCTTCCTATA 58.854 57.895 2.30 0.00 38.26 1.31
2430 2572 0.250510 GCCAGGGCTGCTTCCTATAC 60.251 60.000 2.30 0.00 38.26 1.47
2431 2573 0.398318 CCAGGGCTGCTTCCTATACC 59.602 60.000 0.00 0.00 32.49 2.73
2432 2574 0.034059 CAGGGCTGCTTCCTATACCG 59.966 60.000 0.00 0.00 32.49 4.02
2433 2575 0.398664 AGGGCTGCTTCCTATACCGT 60.399 55.000 0.00 0.00 31.86 4.83
2434 2576 0.033642 GGGCTGCTTCCTATACCGTC 59.966 60.000 0.00 0.00 0.00 4.79
2435 2577 1.041437 GGCTGCTTCCTATACCGTCT 58.959 55.000 0.00 0.00 0.00 4.18
2436 2578 1.269831 GGCTGCTTCCTATACCGTCTG 60.270 57.143 0.00 0.00 0.00 3.51
2437 2579 1.269831 GCTGCTTCCTATACCGTCTGG 60.270 57.143 0.00 0.00 42.84 3.86
2438 2580 2.307768 CTGCTTCCTATACCGTCTGGA 58.692 52.381 0.00 0.00 39.21 3.86
2439 2581 2.294791 CTGCTTCCTATACCGTCTGGAG 59.705 54.545 0.00 0.00 39.21 3.86
2440 2582 2.092049 TGCTTCCTATACCGTCTGGAGA 60.092 50.000 0.00 0.00 39.21 3.71
2441 2583 2.554893 GCTTCCTATACCGTCTGGAGAG 59.445 54.545 0.00 0.00 39.21 3.20
2442 2584 3.822940 CTTCCTATACCGTCTGGAGAGT 58.177 50.000 0.00 0.00 39.21 3.24
2443 2585 4.746089 GCTTCCTATACCGTCTGGAGAGTA 60.746 50.000 0.00 0.00 39.21 2.59
2444 2586 4.348863 TCCTATACCGTCTGGAGAGTAC 57.651 50.000 0.00 0.00 39.21 2.73
2445 2587 3.072184 TCCTATACCGTCTGGAGAGTACC 59.928 52.174 0.00 0.00 39.21 3.34
2446 2588 2.361643 ATACCGTCTGGAGAGTACCC 57.638 55.000 0.00 0.00 39.21 3.69
2447 2589 0.994247 TACCGTCTGGAGAGTACCCA 59.006 55.000 0.00 0.00 39.21 4.51
2448 2590 0.611340 ACCGTCTGGAGAGTACCCAC 60.611 60.000 0.00 0.00 39.21 4.61
2449 2591 1.321074 CCGTCTGGAGAGTACCCACC 61.321 65.000 0.00 0.00 37.49 4.61
2450 2592 1.654954 CGTCTGGAGAGTACCCACCG 61.655 65.000 0.00 0.00 0.00 4.94
2451 2593 1.681327 TCTGGAGAGTACCCACCGC 60.681 63.158 0.00 0.00 0.00 5.68
2452 2594 1.682684 CTGGAGAGTACCCACCGCT 60.683 63.158 0.00 0.00 0.00 5.52
2453 2595 0.395311 CTGGAGAGTACCCACCGCTA 60.395 60.000 0.00 0.00 0.00 4.26
2454 2596 0.682209 TGGAGAGTACCCACCGCTAC 60.682 60.000 0.00 0.00 0.00 3.58
2455 2597 0.395448 GGAGAGTACCCACCGCTACT 60.395 60.000 0.00 0.00 0.00 2.57
2456 2598 0.739561 GAGAGTACCCACCGCTACTG 59.260 60.000 0.00 0.00 0.00 2.74
2457 2599 1.141234 GAGTACCCACCGCTACTGC 59.859 63.158 0.00 0.00 0.00 4.40
2458 2600 2.186125 GTACCCACCGCTACTGCC 59.814 66.667 0.00 0.00 35.36 4.85
2459 2601 3.454573 TACCCACCGCTACTGCCG 61.455 66.667 0.00 0.00 35.36 5.69
2460 2602 3.942377 TACCCACCGCTACTGCCGA 62.942 63.158 0.00 0.00 35.36 5.54
2461 2603 4.514577 CCCACCGCTACTGCCGAG 62.515 72.222 0.00 0.00 35.36 4.63
2484 2626 4.256180 GCTACGGCCTCCCCATGG 62.256 72.222 4.14 4.14 0.00 3.66
2490 2632 4.554036 GCCTCCCCATGGCGTCTC 62.554 72.222 6.09 0.00 41.03 3.36
2491 2633 3.866582 CCTCCCCATGGCGTCTCC 61.867 72.222 6.09 0.00 0.00 3.71
2492 2634 4.227134 CTCCCCATGGCGTCTCCG 62.227 72.222 6.09 0.00 37.80 4.63
2494 2636 4.530857 CCCCATGGCGTCTCCGTC 62.531 72.222 6.09 0.00 39.72 4.79
2495 2637 4.530857 CCCATGGCGTCTCCGTCC 62.531 72.222 6.09 0.00 38.09 4.79
2496 2638 4.530857 CCATGGCGTCTCCGTCCC 62.531 72.222 0.00 0.00 38.09 4.46
2497 2639 4.530857 CATGGCGTCTCCGTCCCC 62.531 72.222 0.00 0.00 38.09 4.81
2502 2644 3.450115 CGTCTCCGTCCCCCTCAC 61.450 72.222 0.00 0.00 0.00 3.51
2503 2645 3.075641 GTCTCCGTCCCCCTCACC 61.076 72.222 0.00 0.00 0.00 4.02
2504 2646 4.753662 TCTCCGTCCCCCTCACCG 62.754 72.222 0.00 0.00 0.00 4.94
2540 2682 4.974438 TGGGACCCGGTGCTCCTT 62.974 66.667 9.19 0.00 0.00 3.36
2541 2683 4.097361 GGGACCCGGTGCTCCTTC 62.097 72.222 9.19 0.00 0.00 3.46
2542 2684 4.097361 GGACCCGGTGCTCCTTCC 62.097 72.222 0.00 2.55 0.00 3.46
2543 2685 4.097361 GACCCGGTGCTCCTTCCC 62.097 72.222 0.00 0.00 0.00 3.97
2547 2689 4.473520 CGGTGCTCCTTCCCGCAT 62.474 66.667 2.85 0.00 38.56 4.73
2548 2690 2.044946 GGTGCTCCTTCCCGCATT 60.045 61.111 0.00 0.00 38.56 3.56
2549 2691 2.409870 GGTGCTCCTTCCCGCATTG 61.410 63.158 0.00 0.00 38.56 2.82
2550 2692 2.751436 TGCTCCTTCCCGCATTGC 60.751 61.111 0.00 0.00 0.00 3.56
2551 2693 2.751436 GCTCCTTCCCGCATTGCA 60.751 61.111 9.69 0.00 0.00 4.08
2552 2694 2.123428 GCTCCTTCCCGCATTGCAT 61.123 57.895 9.69 0.00 0.00 3.96
2553 2695 1.731700 CTCCTTCCCGCATTGCATG 59.268 57.895 9.69 0.00 0.00 4.06
2562 2704 4.146058 CATTGCATGCCGCTCCTA 57.854 55.556 16.68 0.00 43.06 2.94
2563 2705 1.650912 CATTGCATGCCGCTCCTAC 59.349 57.895 16.68 0.00 43.06 3.18
2564 2706 1.889105 ATTGCATGCCGCTCCTACG 60.889 57.895 16.68 0.00 43.06 3.51
2571 2713 4.124351 CCGCTCCTACGCCGAACA 62.124 66.667 0.00 0.00 0.00 3.18
2572 2714 2.126228 CGCTCCTACGCCGAACAA 60.126 61.111 0.00 0.00 0.00 2.83
2573 2715 2.442188 CGCTCCTACGCCGAACAAC 61.442 63.158 0.00 0.00 0.00 3.32
2574 2716 1.080025 GCTCCTACGCCGAACAACT 60.080 57.895 0.00 0.00 0.00 3.16
2575 2717 0.171903 GCTCCTACGCCGAACAACTA 59.828 55.000 0.00 0.00 0.00 2.24
2576 2718 1.905449 CTCCTACGCCGAACAACTAC 58.095 55.000 0.00 0.00 0.00 2.73
2577 2719 1.200716 CTCCTACGCCGAACAACTACA 59.799 52.381 0.00 0.00 0.00 2.74
2578 2720 1.068333 TCCTACGCCGAACAACTACAC 60.068 52.381 0.00 0.00 0.00 2.90
2579 2721 1.343506 CTACGCCGAACAACTACACC 58.656 55.000 0.00 0.00 0.00 4.16
2580 2722 0.387112 TACGCCGAACAACTACACCG 60.387 55.000 0.00 0.00 0.00 4.94
2581 2723 1.372004 CGCCGAACAACTACACCGA 60.372 57.895 0.00 0.00 0.00 4.69
2582 2724 0.940519 CGCCGAACAACTACACCGAA 60.941 55.000 0.00 0.00 0.00 4.30
2583 2725 0.788391 GCCGAACAACTACACCGAAG 59.212 55.000 0.00 0.00 0.00 3.79
2600 2742 4.801147 CGAAGGTGATGATTGGTACATG 57.199 45.455 0.00 0.00 39.30 3.21
2601 2743 3.561310 CGAAGGTGATGATTGGTACATGG 59.439 47.826 0.00 0.00 39.30 3.66
2602 2744 4.683129 CGAAGGTGATGATTGGTACATGGA 60.683 45.833 0.00 0.00 39.30 3.41
2603 2745 4.156455 AGGTGATGATTGGTACATGGAC 57.844 45.455 0.00 0.00 39.30 4.02
2604 2746 3.523157 AGGTGATGATTGGTACATGGACA 59.477 43.478 10.99 0.00 39.30 4.02
2605 2747 3.627577 GGTGATGATTGGTACATGGACAC 59.372 47.826 10.99 0.00 39.30 3.67
2606 2748 3.627577 GTGATGATTGGTACATGGACACC 59.372 47.826 10.99 8.35 39.30 4.16
2607 2749 2.394930 TGATTGGTACATGGACACCG 57.605 50.000 10.99 0.00 39.30 4.94
2608 2750 1.065782 TGATTGGTACATGGACACCGG 60.066 52.381 10.99 0.00 39.30 5.28
2609 2751 0.254747 ATTGGTACATGGACACCGGG 59.745 55.000 10.99 0.00 39.30 5.73
2610 2752 1.843462 TTGGTACATGGACACCGGGG 61.843 60.000 10.99 0.00 39.30 5.73
2611 2753 2.124860 GTACATGGACACCGGGGC 60.125 66.667 1.73 0.00 0.00 5.80
2612 2754 2.285069 TACATGGACACCGGGGCT 60.285 61.111 1.73 0.00 0.00 5.19
2613 2755 1.001888 TACATGGACACCGGGGCTA 59.998 57.895 1.73 0.00 0.00 3.93
2614 2756 1.332144 TACATGGACACCGGGGCTAC 61.332 60.000 1.73 0.00 0.00 3.58
2615 2757 3.467226 ATGGACACCGGGGCTACG 61.467 66.667 1.73 0.00 0.00 3.51
2623 2765 3.849951 CGGGGCTACGGCTCACAT 61.850 66.667 0.00 0.00 41.58 3.21
2624 2766 2.203070 GGGGCTACGGCTCACATG 60.203 66.667 0.00 0.00 41.58 3.21
2625 2767 2.584608 GGGCTACGGCTCACATGT 59.415 61.111 0.00 0.00 39.12 3.21
2626 2768 1.078426 GGGCTACGGCTCACATGTT 60.078 57.895 0.00 0.00 39.12 2.71
2627 2769 0.676782 GGGCTACGGCTCACATGTTT 60.677 55.000 0.00 0.00 39.12 2.83
2628 2770 0.447801 GGCTACGGCTCACATGTTTG 59.552 55.000 0.00 0.00 38.73 2.93
2629 2771 0.179189 GCTACGGCTCACATGTTTGC 60.179 55.000 10.43 10.43 35.22 3.68
2630 2772 1.442769 CTACGGCTCACATGTTTGCT 58.557 50.000 16.37 4.08 0.00 3.91
2631 2773 1.394917 CTACGGCTCACATGTTTGCTC 59.605 52.381 16.37 8.29 0.00 4.26
2632 2774 0.534877 ACGGCTCACATGTTTGCTCA 60.535 50.000 16.37 0.00 0.00 4.26
2633 2775 0.806868 CGGCTCACATGTTTGCTCAT 59.193 50.000 16.37 0.00 0.00 2.90
2634 2776 1.202110 CGGCTCACATGTTTGCTCATC 60.202 52.381 16.37 2.98 0.00 2.92
2635 2777 1.133790 GGCTCACATGTTTGCTCATCC 59.866 52.381 16.37 0.33 0.00 3.51
2636 2778 2.089980 GCTCACATGTTTGCTCATCCT 58.910 47.619 11.36 0.00 0.00 3.24
2637 2779 2.159421 GCTCACATGTTTGCTCATCCTG 60.159 50.000 11.36 0.00 0.00 3.86
2638 2780 2.422479 CTCACATGTTTGCTCATCCTGG 59.578 50.000 0.00 0.00 0.00 4.45
2639 2781 2.165167 CACATGTTTGCTCATCCTGGT 58.835 47.619 0.00 0.00 0.00 4.00
2640 2782 3.008923 TCACATGTTTGCTCATCCTGGTA 59.991 43.478 0.00 0.00 0.00 3.25
2641 2783 3.758023 CACATGTTTGCTCATCCTGGTAA 59.242 43.478 0.00 0.00 0.00 2.85
2642 2784 4.400251 CACATGTTTGCTCATCCTGGTAAT 59.600 41.667 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.445385 ACTTGTTCTTTCGCATTTGCAATC 59.555 37.500 0.00 0.00 42.21 2.67
42 43 1.144969 GACGCCGTTTCAGAATGTCA 58.855 50.000 0.00 0.00 37.40 3.58
77 78 4.586001 ACTTTGCATCATCACCTGTCTTTT 59.414 37.500 0.00 0.00 0.00 2.27
521 524 2.331265 GGCTGCCGAACTTGTCTTT 58.669 52.632 1.35 0.00 0.00 2.52
773 838 2.281208 CGACCGCCCAAAACCTCA 60.281 61.111 0.00 0.00 0.00 3.86
912 1009 4.454504 GTGATGTAAAATCCAACACCTCGT 59.545 41.667 0.00 0.00 31.60 4.18
997 1096 4.154942 ACCTAACTTTTGGACCGTCTAGA 58.845 43.478 0.00 0.00 0.00 2.43
999 1098 5.954150 AGATACCTAACTTTTGGACCGTCTA 59.046 40.000 0.00 0.00 0.00 2.59
1022 1121 3.065371 CGCTTCCCTTTTGTTGCCTATAG 59.935 47.826 0.00 0.00 0.00 1.31
1109 1208 3.822192 CGTGGTCCTCGCCATCGA 61.822 66.667 0.00 0.00 41.08 3.59
1321 1422 0.738975 CGTACTTCTCGATGAGGCCA 59.261 55.000 5.01 0.00 0.00 5.36
1355 1456 2.418746 CGCCCATAGTTACTTGCAGAGT 60.419 50.000 0.00 6.74 42.55 3.24
1358 1459 1.299541 CCGCCCATAGTTACTTGCAG 58.700 55.000 0.00 0.00 0.00 4.41
1360 1461 1.772063 CGCCGCCCATAGTTACTTGC 61.772 60.000 0.00 0.00 0.00 4.01
1362 1463 1.145377 CCGCCGCCCATAGTTACTT 59.855 57.895 0.00 0.00 0.00 2.24
1363 1464 2.803817 CCCGCCGCCCATAGTTACT 61.804 63.158 0.00 0.00 0.00 2.24
1364 1465 2.280592 CCCGCCGCCCATAGTTAC 60.281 66.667 0.00 0.00 0.00 2.50
1365 1466 2.065185 TTCCCGCCGCCCATAGTTA 61.065 57.895 0.00 0.00 0.00 2.24
1366 1467 3.404438 TTCCCGCCGCCCATAGTT 61.404 61.111 0.00 0.00 0.00 2.24
1368 1469 4.169696 TGTTCCCGCCGCCCATAG 62.170 66.667 0.00 0.00 0.00 2.23
1372 1473 3.394635 TTATCTGTTCCCGCCGCCC 62.395 63.158 0.00 0.00 0.00 6.13
1373 1474 2.178235 GTTATCTGTTCCCGCCGCC 61.178 63.158 0.00 0.00 0.00 6.13
1410 1511 0.614812 GGTGGCCCTGCAAATCAAAT 59.385 50.000 0.00 0.00 0.00 2.32
1413 1514 2.676121 CGGTGGCCCTGCAAATCA 60.676 61.111 0.00 0.00 0.00 2.57
1414 1515 3.451894 CCGGTGGCCCTGCAAATC 61.452 66.667 0.00 0.00 0.00 2.17
1459 1560 2.832129 TGGCTAATGAACGTTCTCCTCT 59.168 45.455 27.32 10.71 0.00 3.69
1468 1569 3.486875 GGACCGAAAATGGCTAATGAACG 60.487 47.826 0.00 0.00 0.00 3.95
1550 1662 1.398041 TGCAGACAATAGACAATGCGC 59.602 47.619 0.00 0.00 36.47 6.09
1555 1667 3.678289 ACAGCATGCAGACAATAGACAA 58.322 40.909 21.98 0.00 42.53 3.18
1561 1673 2.889045 AGTCAAACAGCATGCAGACAAT 59.111 40.909 21.98 0.00 42.53 2.71
1562 1674 2.033675 CAGTCAAACAGCATGCAGACAA 59.966 45.455 21.98 0.00 42.53 3.18
1563 1675 1.605232 CAGTCAAACAGCATGCAGACA 59.395 47.619 21.98 0.00 42.53 3.41
1564 1676 1.875514 TCAGTCAAACAGCATGCAGAC 59.124 47.619 21.98 17.64 42.53 3.51
1565 1677 2.259266 TCAGTCAAACAGCATGCAGA 57.741 45.000 21.98 6.59 42.53 4.26
1566 1678 3.570926 ATTCAGTCAAACAGCATGCAG 57.429 42.857 21.98 15.38 42.53 4.41
1567 1679 4.201841 CGATATTCAGTCAAACAGCATGCA 60.202 41.667 21.98 0.00 42.53 3.96
1568 1680 4.201851 ACGATATTCAGTCAAACAGCATGC 60.202 41.667 10.51 10.51 42.53 4.06
1569 1681 5.475273 ACGATATTCAGTCAAACAGCATG 57.525 39.130 0.00 0.00 46.00 4.06
1570 1682 7.280876 ACATTACGATATTCAGTCAAACAGCAT 59.719 33.333 0.00 0.00 0.00 3.79
1571 1683 6.593770 ACATTACGATATTCAGTCAAACAGCA 59.406 34.615 0.00 0.00 0.00 4.41
1572 1684 7.005062 ACATTACGATATTCAGTCAAACAGC 57.995 36.000 0.00 0.00 0.00 4.40
1573 1685 9.302345 AGTACATTACGATATTCAGTCAAACAG 57.698 33.333 0.00 0.00 0.00 3.16
1574 1686 9.647797 AAGTACATTACGATATTCAGTCAAACA 57.352 29.630 0.00 0.00 0.00 2.83
1577 1689 9.516314 CAGAAGTACATTACGATATTCAGTCAA 57.484 33.333 0.00 0.00 0.00 3.18
1578 1690 7.648112 GCAGAAGTACATTACGATATTCAGTCA 59.352 37.037 0.00 0.00 0.00 3.41
1579 1691 7.115095 GGCAGAAGTACATTACGATATTCAGTC 59.885 40.741 0.00 0.00 0.00 3.51
1580 1692 6.924060 GGCAGAAGTACATTACGATATTCAGT 59.076 38.462 0.00 0.00 0.00 3.41
1581 1693 6.923508 TGGCAGAAGTACATTACGATATTCAG 59.076 38.462 0.00 0.00 0.00 3.02
1590 1702 9.722056 CTTTATCATTTGGCAGAAGTACATTAC 57.278 33.333 0.00 0.00 0.00 1.89
1616 1728 5.354054 TTTATACGGCGACAGACTAGATC 57.646 43.478 16.62 0.00 0.00 2.75
1626 1738 9.750882 GAGGATTTATTTTATTTATACGGCGAC 57.249 33.333 16.62 0.00 0.00 5.19
1644 1761 8.282982 ACAACAGAGACTATCTAGGAGGATTTA 58.717 37.037 0.00 0.00 36.10 1.40
1653 1770 5.209240 GCGCTTACAACAGAGACTATCTAG 58.791 45.833 0.00 0.00 36.10 2.43
1654 1771 4.036498 GGCGCTTACAACAGAGACTATCTA 59.964 45.833 7.64 0.00 36.10 1.98
1667 1784 1.243902 CTTTTCAGGGGCGCTTACAA 58.756 50.000 7.64 0.00 0.00 2.41
1674 1791 0.035056 ACAGATCCTTTTCAGGGGCG 60.035 55.000 0.00 0.00 41.25 6.13
1682 1799 4.546674 ACAGGGAAACAACAGATCCTTTT 58.453 39.130 0.00 0.00 33.61 2.27
1686 1803 3.222603 ACAACAGGGAAACAACAGATCC 58.777 45.455 0.00 0.00 0.00 3.36
1720 1837 4.278419 CGGAAATGGAGAAAACCACTCTTT 59.722 41.667 0.00 0.00 43.03 2.52
1725 1845 3.408634 TCTCGGAAATGGAGAAAACCAC 58.591 45.455 0.00 0.00 43.03 4.16
1768 1907 6.986904 ACTCAAATTTAGAAATCGGGAGAC 57.013 37.500 13.20 0.00 44.82 3.36
1771 1910 8.098286 TGACTTACTCAAATTTAGAAATCGGGA 58.902 33.333 0.00 0.00 0.00 5.14
1831 1973 6.262601 ACAACACAAGGAAATAAAGAACACG 58.737 36.000 0.00 0.00 0.00 4.49
1871 2013 7.666804 AGTTAGGTATTTTTACATTTGGACCGT 59.333 33.333 0.00 0.00 0.00 4.83
1872 2014 8.047413 AGTTAGGTATTTTTACATTTGGACCG 57.953 34.615 0.00 0.00 0.00 4.79
1880 2022 8.517056 CGGTCCAAAAGTTAGGTATTTTTACAT 58.483 33.333 0.00 0.00 0.00 2.29
1881 2023 7.501892 ACGGTCCAAAAGTTAGGTATTTTTACA 59.498 33.333 0.00 0.00 0.00 2.41
1882 2024 7.874940 ACGGTCCAAAAGTTAGGTATTTTTAC 58.125 34.615 0.00 0.00 0.00 2.01
1883 2025 7.938490 AGACGGTCCAAAAGTTAGGTATTTTTA 59.062 33.333 4.14 0.00 0.00 1.52
1884 2026 6.774170 AGACGGTCCAAAAGTTAGGTATTTTT 59.226 34.615 4.14 0.00 0.00 1.94
1885 2027 6.301486 AGACGGTCCAAAAGTTAGGTATTTT 58.699 36.000 4.14 0.00 0.00 1.82
1886 2028 5.872963 AGACGGTCCAAAAGTTAGGTATTT 58.127 37.500 4.14 0.00 0.00 1.40
1887 2029 5.494390 AGACGGTCCAAAAGTTAGGTATT 57.506 39.130 4.14 0.00 0.00 1.89
1888 2030 6.803366 ATAGACGGTCCAAAAGTTAGGTAT 57.197 37.500 4.14 0.00 0.00 2.73
1889 2031 6.610075 AATAGACGGTCCAAAAGTTAGGTA 57.390 37.500 4.14 0.00 0.00 3.08
1890 2032 5.494390 AATAGACGGTCCAAAAGTTAGGT 57.506 39.130 4.14 0.00 0.00 3.08
1891 2033 6.047231 CCTAATAGACGGTCCAAAAGTTAGG 58.953 44.000 4.14 9.60 32.45 2.69
1892 2034 5.522824 GCCTAATAGACGGTCCAAAAGTTAG 59.477 44.000 4.14 5.07 0.00 2.34
1893 2035 5.422145 GCCTAATAGACGGTCCAAAAGTTA 58.578 41.667 4.14 0.00 0.00 2.24
1894 2036 4.259356 GCCTAATAGACGGTCCAAAAGTT 58.741 43.478 4.14 0.00 0.00 2.66
1895 2037 3.370209 GGCCTAATAGACGGTCCAAAAGT 60.370 47.826 4.14 0.00 0.00 2.66
1896 2038 3.203716 GGCCTAATAGACGGTCCAAAAG 58.796 50.000 4.14 0.00 0.00 2.27
1897 2039 2.572556 TGGCCTAATAGACGGTCCAAAA 59.427 45.455 3.32 0.00 0.00 2.44
1898 2040 2.093341 GTGGCCTAATAGACGGTCCAAA 60.093 50.000 3.32 0.00 31.48 3.28
1899 2041 1.483415 GTGGCCTAATAGACGGTCCAA 59.517 52.381 3.32 0.00 31.48 3.53
1900 2042 1.117150 GTGGCCTAATAGACGGTCCA 58.883 55.000 3.32 0.00 0.00 4.02
1901 2043 0.031721 CGTGGCCTAATAGACGGTCC 59.968 60.000 3.32 0.00 0.00 4.46
1902 2044 0.596859 GCGTGGCCTAATAGACGGTC 60.597 60.000 12.34 0.00 32.45 4.79
1903 2045 1.440476 GCGTGGCCTAATAGACGGT 59.560 57.895 12.34 0.00 32.45 4.83
1904 2046 1.300697 GGCGTGGCCTAATAGACGG 60.301 63.158 12.34 0.00 46.69 4.79
1905 2047 4.338327 GGCGTGGCCTAATAGACG 57.662 61.111 3.32 5.33 46.69 4.18
1955 2097 2.202756 GTTCGGGTGGCTAGCGAG 60.203 66.667 9.00 0.00 0.00 5.03
1956 2098 3.766691 GGTTCGGGTGGCTAGCGA 61.767 66.667 9.00 0.68 0.00 4.93
1957 2099 4.832608 GGGTTCGGGTGGCTAGCG 62.833 72.222 9.00 0.00 0.00 4.26
1958 2100 4.832608 CGGGTTCGGGTGGCTAGC 62.833 72.222 6.04 6.04 0.00 3.42
1959 2101 4.832608 GCGGGTTCGGGTGGCTAG 62.833 72.222 0.00 0.00 36.79 3.42
1964 2106 4.143333 ATCGAGCGGGTTCGGGTG 62.143 66.667 5.13 0.00 40.83 4.61
1965 2107 3.834799 GATCGAGCGGGTTCGGGT 61.835 66.667 5.13 0.00 40.83 5.28
1966 2108 4.925576 CGATCGAGCGGGTTCGGG 62.926 72.222 16.65 0.00 40.83 5.14
1969 2111 4.508128 TGGCGATCGAGCGGGTTC 62.508 66.667 25.73 7.58 38.18 3.62
1970 2112 4.077184 TTGGCGATCGAGCGGGTT 62.077 61.111 25.73 0.00 38.18 4.11
1971 2113 4.514577 CTTGGCGATCGAGCGGGT 62.515 66.667 25.73 0.00 38.18 5.28
1976 2118 4.880537 AGCGGCTTGGCGATCGAG 62.881 66.667 21.57 8.75 38.18 4.04
1977 2119 4.451150 AAGCGGCTTGGCGATCGA 62.451 61.111 21.57 0.00 38.18 3.59
1978 2120 3.929948 GAAGCGGCTTGGCGATCG 61.930 66.667 21.70 11.69 38.18 3.69
1979 2121 3.929948 CGAAGCGGCTTGGCGATC 61.930 66.667 21.70 14.82 38.18 3.69
2043 2185 2.811317 CTGACGAGGCGAGTTGGC 60.811 66.667 0.00 0.00 45.27 4.52
2044 2186 2.811317 GCTGACGAGGCGAGTTGG 60.811 66.667 0.00 0.00 0.00 3.77
2045 2187 2.811317 GGCTGACGAGGCGAGTTG 60.811 66.667 0.00 0.00 34.60 3.16
2098 2240 3.245315 CGAGTTACGGGCTTCGCG 61.245 66.667 0.00 0.00 45.13 5.87
2099 2241 3.551915 GCGAGTTACGGGCTTCGC 61.552 66.667 10.04 10.04 43.89 4.70
2100 2242 1.872679 GAGCGAGTTACGGGCTTCG 60.873 63.158 4.87 0.00 45.88 3.79
2101 2243 1.872679 CGAGCGAGTTACGGGCTTC 60.873 63.158 4.87 0.00 42.83 3.86
2102 2244 1.664321 ATCGAGCGAGTTACGGGCTT 61.664 55.000 4.87 0.00 42.83 4.35
2103 2245 2.061182 GATCGAGCGAGTTACGGGCT 62.061 60.000 3.10 3.10 42.83 5.19
2104 2246 1.657794 GATCGAGCGAGTTACGGGC 60.658 63.158 0.00 0.00 42.83 6.13
2105 2247 1.368969 CGATCGAGCGAGTTACGGG 60.369 63.158 20.02 0.00 42.83 5.28
2106 2248 2.004489 GCGATCGAGCGAGTTACGG 61.004 63.158 29.29 0.00 42.83 4.02
2107 2249 2.004489 GGCGATCGAGCGAGTTACG 61.004 63.158 29.29 5.57 45.66 3.18
2108 2250 1.657794 GGGCGATCGAGCGAGTTAC 60.658 63.158 29.29 8.29 38.18 2.50
2109 2251 2.719979 GGGCGATCGAGCGAGTTA 59.280 61.111 29.29 0.00 38.18 2.24
2110 2252 4.554363 CGGGCGATCGAGCGAGTT 62.554 66.667 29.29 0.00 38.18 3.01
2112 2254 4.965858 GTCGGGCGATCGAGCGAG 62.966 72.222 29.29 16.73 40.01 5.03
2176 2318 4.873129 CCATCGCAGGTCCGACGG 62.873 72.222 7.84 7.84 40.40 4.79
2182 2324 4.451150 TGGACGCCATCGCAGGTC 62.451 66.667 0.00 0.00 39.84 3.85
2183 2325 4.760047 GTGGACGCCATCGCAGGT 62.760 66.667 1.90 0.00 39.84 4.00
2270 2412 3.371063 TGGTCGACGGGCAGAGTC 61.371 66.667 9.92 0.00 35.41 3.36
2271 2413 3.681835 GTGGTCGACGGGCAGAGT 61.682 66.667 9.92 0.00 0.00 3.24
2272 2414 2.932234 AAGTGGTCGACGGGCAGAG 61.932 63.158 9.92 0.00 0.00 3.35
2273 2415 2.915659 AAGTGGTCGACGGGCAGA 60.916 61.111 9.92 0.00 0.00 4.26
2274 2416 2.738521 CAAGTGGTCGACGGGCAG 60.739 66.667 9.92 0.00 0.00 4.85
2275 2417 4.980805 GCAAGTGGTCGACGGGCA 62.981 66.667 9.92 0.00 0.00 5.36
2276 2418 4.681978 AGCAAGTGGTCGACGGGC 62.682 66.667 9.92 8.31 0.00 6.13
2277 2419 2.738521 CAGCAAGTGGTCGACGGG 60.739 66.667 9.92 0.00 0.00 5.28
2278 2420 1.594293 AACAGCAAGTGGTCGACGG 60.594 57.895 9.92 0.00 0.00 4.79
2279 2421 1.564622 CAACAGCAAGTGGTCGACG 59.435 57.895 9.92 0.00 0.00 5.12
2280 2422 1.279840 GCAACAGCAAGTGGTCGAC 59.720 57.895 7.13 7.13 0.00 4.20
2281 2423 2.243957 CGCAACAGCAAGTGGTCGA 61.244 57.895 0.00 0.00 0.00 4.20
2282 2424 2.249309 CGCAACAGCAAGTGGTCG 59.751 61.111 0.00 0.00 0.00 4.79
2283 2425 2.050985 GCGCAACAGCAAGTGGTC 60.051 61.111 0.30 0.00 37.05 4.02
2284 2426 3.952675 CGCGCAACAGCAAGTGGT 61.953 61.111 8.75 0.00 36.85 4.16
2285 2427 4.688419 CCGCGCAACAGCAAGTGG 62.688 66.667 8.75 0.00 36.85 4.00
2286 2428 4.688419 CCCGCGCAACAGCAAGTG 62.688 66.667 8.75 0.00 36.85 3.16
2329 2471 4.143333 CCCACCAGTACGCGGGAG 62.143 72.222 12.47 0.00 41.62 4.30
2333 2475 4.814294 GAGCCCCACCAGTACGCG 62.814 72.222 3.53 3.53 0.00 6.01
2334 2476 4.814294 CGAGCCCCACCAGTACGC 62.814 72.222 0.00 0.00 0.00 4.42
2335 2477 3.352338 GACGAGCCCCACCAGTACG 62.352 68.421 0.00 0.00 0.00 3.67
2336 2478 2.227089 CTGACGAGCCCCACCAGTAC 62.227 65.000 0.00 0.00 0.00 2.73
2337 2479 1.982395 CTGACGAGCCCCACCAGTA 60.982 63.158 0.00 0.00 0.00 2.74
2338 2480 3.314331 CTGACGAGCCCCACCAGT 61.314 66.667 0.00 0.00 0.00 4.00
2339 2481 4.767255 GCTGACGAGCCCCACCAG 62.767 72.222 0.00 0.00 39.57 4.00
2341 2483 4.767255 CTGCTGACGAGCCCCACC 62.767 72.222 0.00 0.00 45.57 4.61
2342 2484 4.767255 CCTGCTGACGAGCCCCAC 62.767 72.222 0.00 0.00 45.57 4.61
2348 2490 4.383861 TGCTGGCCTGCTGACGAG 62.384 66.667 31.50 7.13 0.00 4.18
2349 2491 4.383861 CTGCTGGCCTGCTGACGA 62.384 66.667 31.50 13.08 34.47 4.20
2351 2493 3.857309 AACCTGCTGGCCTGCTGAC 62.857 63.158 33.48 10.04 36.63 3.51
2352 2494 2.645394 AAAACCTGCTGGCCTGCTGA 62.645 55.000 33.48 16.84 36.63 4.26
2353 2495 1.751349 AAAAACCTGCTGGCCTGCTG 61.751 55.000 31.50 29.49 36.63 4.41
2354 2496 1.458209 AAAAACCTGCTGGCCTGCT 60.458 52.632 31.50 12.30 36.63 4.24
2355 2497 1.005748 GAAAAACCTGCTGGCCTGC 60.006 57.895 26.46 26.46 36.63 4.85
2356 2498 1.667722 GGAAAAACCTGCTGGCCTG 59.332 57.895 9.95 4.26 36.63 4.85
2357 2499 1.903404 CGGAAAAACCTGCTGGCCT 60.903 57.895 9.95 0.00 36.63 5.19
2358 2500 2.650778 CGGAAAAACCTGCTGGCC 59.349 61.111 9.95 0.00 36.63 5.36
2359 2501 2.650778 CCGGAAAAACCTGCTGGC 59.349 61.111 9.95 0.00 36.63 4.85
2360 2502 2.650778 GCCGGAAAAACCTGCTGG 59.349 61.111 5.05 8.29 43.88 4.85
2361 2503 2.255252 CGCCGGAAAAACCTGCTG 59.745 61.111 5.05 0.00 44.82 4.41
2362 2504 2.983592 CCGCCGGAAAAACCTGCT 60.984 61.111 5.05 0.00 44.82 4.24
2363 2505 4.050934 CCCGCCGGAAAAACCTGC 62.051 66.667 5.05 0.00 43.82 4.85
2364 2506 4.050934 GCCCGCCGGAAAAACCTG 62.051 66.667 5.05 0.00 36.31 4.00
2367 2509 3.350909 GATGGCCCGCCGGAAAAAC 62.351 63.158 5.05 0.00 39.42 2.43
2368 2510 3.065567 GATGGCCCGCCGGAAAAA 61.066 61.111 5.05 0.00 39.42 1.94
2390 2532 4.814294 GACTGCGGTGCCGGGTAG 62.814 72.222 0.80 0.00 40.19 3.18
2411 2553 0.250510 GTATAGGAAGCAGCCCTGGC 60.251 60.000 0.00 0.00 42.33 4.85
2412 2554 0.398318 GGTATAGGAAGCAGCCCTGG 59.602 60.000 0.54 0.00 35.30 4.45
2413 2555 0.034059 CGGTATAGGAAGCAGCCCTG 59.966 60.000 0.54 0.00 35.30 4.45
2414 2556 0.398664 ACGGTATAGGAAGCAGCCCT 60.399 55.000 0.00 0.00 37.80 5.19
2415 2557 0.033642 GACGGTATAGGAAGCAGCCC 59.966 60.000 0.00 0.00 0.00 5.19
2416 2558 1.041437 AGACGGTATAGGAAGCAGCC 58.959 55.000 0.00 0.00 0.00 4.85
2417 2559 1.269831 CCAGACGGTATAGGAAGCAGC 60.270 57.143 0.00 0.00 0.00 5.25
2418 2560 2.294791 CTCCAGACGGTATAGGAAGCAG 59.705 54.545 0.00 0.00 0.00 4.24
2419 2561 2.092049 TCTCCAGACGGTATAGGAAGCA 60.092 50.000 0.00 0.00 0.00 3.91
2420 2562 2.554893 CTCTCCAGACGGTATAGGAAGC 59.445 54.545 0.00 0.00 0.00 3.86
2421 2563 3.822940 ACTCTCCAGACGGTATAGGAAG 58.177 50.000 0.00 0.00 0.00 3.46
2422 2564 3.947612 ACTCTCCAGACGGTATAGGAA 57.052 47.619 0.00 0.00 0.00 3.36
2423 2565 3.072184 GGTACTCTCCAGACGGTATAGGA 59.928 52.174 0.00 0.00 0.00 2.94
2424 2566 3.410508 GGTACTCTCCAGACGGTATAGG 58.589 54.545 0.00 0.00 0.00 2.57
2425 2567 3.181447 TGGGTACTCTCCAGACGGTATAG 60.181 52.174 0.00 0.00 0.00 1.31
2426 2568 2.779430 TGGGTACTCTCCAGACGGTATA 59.221 50.000 0.00 0.00 0.00 1.47
2427 2569 1.567649 TGGGTACTCTCCAGACGGTAT 59.432 52.381 0.00 0.00 0.00 2.73
2428 2570 0.994247 TGGGTACTCTCCAGACGGTA 59.006 55.000 0.00 0.00 0.00 4.02
2429 2571 0.611340 GTGGGTACTCTCCAGACGGT 60.611 60.000 0.00 0.00 34.56 4.83
2430 2572 1.321074 GGTGGGTACTCTCCAGACGG 61.321 65.000 9.03 0.00 34.56 4.79
2431 2573 1.654954 CGGTGGGTACTCTCCAGACG 61.655 65.000 14.08 6.90 34.56 4.18
2432 2574 1.946475 GCGGTGGGTACTCTCCAGAC 61.946 65.000 14.08 0.00 34.56 3.51
2433 2575 1.681327 GCGGTGGGTACTCTCCAGA 60.681 63.158 14.08 0.00 34.56 3.86
2434 2576 0.395311 TAGCGGTGGGTACTCTCCAG 60.395 60.000 14.08 7.77 34.56 3.86
2435 2577 0.682209 GTAGCGGTGGGTACTCTCCA 60.682 60.000 14.08 0.00 42.46 3.86
2436 2578 2.113767 GTAGCGGTGGGTACTCTCC 58.886 63.158 3.58 3.58 42.46 3.71
2441 2583 2.186125 GGCAGTAGCGGTGGGTAC 59.814 66.667 0.00 0.00 45.31 3.34
2442 2584 3.454573 CGGCAGTAGCGGTGGGTA 61.455 66.667 0.00 0.00 43.41 3.69
2444 2586 4.514577 CTCGGCAGTAGCGGTGGG 62.515 72.222 0.00 0.00 43.41 4.61
2467 2609 4.256180 CCATGGGGAGGCCGTAGC 62.256 72.222 2.85 0.00 35.59 3.58
2468 2610 4.256180 GCCATGGGGAGGCCGTAG 62.256 72.222 15.13 0.00 46.50 3.51
2474 2616 3.866582 GGAGACGCCATGGGGAGG 61.867 72.222 33.50 0.00 38.47 4.30
2486 2628 3.075641 GGTGAGGGGGACGGAGAC 61.076 72.222 0.00 0.00 0.00 3.36
2487 2629 4.753662 CGGTGAGGGGGACGGAGA 62.754 72.222 0.00 0.00 0.00 3.71
2526 2668 4.097361 GGGAAGGAGCACCGGGTC 62.097 72.222 6.32 0.00 41.83 4.46
2530 2672 3.976701 AATGCGGGAAGGAGCACCG 62.977 63.158 0.00 0.00 46.83 4.94
2531 2673 2.044946 AATGCGGGAAGGAGCACC 60.045 61.111 0.00 0.00 46.83 5.01
2532 2674 3.056313 GCAATGCGGGAAGGAGCAC 62.056 63.158 0.00 0.00 46.83 4.40
2534 2676 2.123428 ATGCAATGCGGGAAGGAGC 61.123 57.895 0.00 0.00 0.00 4.70
2535 2677 1.731700 CATGCAATGCGGGAAGGAG 59.268 57.895 0.00 0.00 37.62 3.69
2536 2678 3.923013 CATGCAATGCGGGAAGGA 58.077 55.556 0.00 0.00 37.62 3.36
2554 2696 3.636313 TTGTTCGGCGTAGGAGCGG 62.636 63.158 6.85 0.00 38.18 5.52
2555 2697 2.126228 TTGTTCGGCGTAGGAGCG 60.126 61.111 6.85 0.00 38.18 5.03
2556 2698 0.171903 TAGTTGTTCGGCGTAGGAGC 59.828 55.000 6.85 0.00 0.00 4.70
2557 2699 1.200716 TGTAGTTGTTCGGCGTAGGAG 59.799 52.381 6.85 0.00 0.00 3.69
2558 2700 1.068333 GTGTAGTTGTTCGGCGTAGGA 60.068 52.381 6.85 0.00 0.00 2.94
2559 2701 1.343506 GTGTAGTTGTTCGGCGTAGG 58.656 55.000 6.85 0.00 0.00 3.18
2560 2702 1.343506 GGTGTAGTTGTTCGGCGTAG 58.656 55.000 6.85 0.00 0.00 3.51
2561 2703 0.387112 CGGTGTAGTTGTTCGGCGTA 60.387 55.000 6.85 0.00 0.00 4.42
2562 2704 1.662446 CGGTGTAGTTGTTCGGCGT 60.662 57.895 6.85 0.00 0.00 5.68
2563 2705 0.940519 TTCGGTGTAGTTGTTCGGCG 60.941 55.000 0.00 0.00 0.00 6.46
2564 2706 0.788391 CTTCGGTGTAGTTGTTCGGC 59.212 55.000 0.00 0.00 0.00 5.54
2565 2707 1.269936 ACCTTCGGTGTAGTTGTTCGG 60.270 52.381 0.00 0.00 32.98 4.30
2566 2708 2.144482 ACCTTCGGTGTAGTTGTTCG 57.856 50.000 0.00 0.00 32.98 3.95
2577 2719 2.569853 TGTACCAATCATCACCTTCGGT 59.430 45.455 0.00 0.00 35.62 4.69
2578 2720 3.260475 TGTACCAATCATCACCTTCGG 57.740 47.619 0.00 0.00 0.00 4.30
2579 2721 3.561310 CCATGTACCAATCATCACCTTCG 59.439 47.826 0.00 0.00 0.00 3.79
2580 2722 4.576463 GTCCATGTACCAATCATCACCTTC 59.424 45.833 0.00 0.00 0.00 3.46
2581 2723 4.018506 TGTCCATGTACCAATCATCACCTT 60.019 41.667 0.00 0.00 0.00 3.50
2582 2724 3.523157 TGTCCATGTACCAATCATCACCT 59.477 43.478 0.00 0.00 0.00 4.00
2583 2725 3.627577 GTGTCCATGTACCAATCATCACC 59.372 47.826 0.00 0.00 0.00 4.02
2584 2726 3.627577 GGTGTCCATGTACCAATCATCAC 59.372 47.826 6.25 0.00 36.94 3.06
2585 2727 3.681313 CGGTGTCCATGTACCAATCATCA 60.681 47.826 10.48 0.00 36.76 3.07
2586 2728 2.872245 CGGTGTCCATGTACCAATCATC 59.128 50.000 10.48 0.00 36.76 2.92
2587 2729 2.421388 CCGGTGTCCATGTACCAATCAT 60.421 50.000 10.48 0.00 36.76 2.45
2588 2730 1.065782 CCGGTGTCCATGTACCAATCA 60.066 52.381 10.48 0.00 36.76 2.57
2589 2731 1.663695 CCGGTGTCCATGTACCAATC 58.336 55.000 10.48 0.00 36.76 2.67
2590 2732 0.254747 CCCGGTGTCCATGTACCAAT 59.745 55.000 0.00 0.00 36.76 3.16
2591 2733 1.680487 CCCGGTGTCCATGTACCAA 59.320 57.895 0.00 0.00 36.76 3.67
2592 2734 2.294839 CCCCGGTGTCCATGTACCA 61.295 63.158 0.00 0.00 36.76 3.25
2593 2735 2.587889 CCCCGGTGTCCATGTACC 59.412 66.667 0.00 0.00 0.00 3.34
2594 2736 1.332144 TAGCCCCGGTGTCCATGTAC 61.332 60.000 0.00 0.00 0.00 2.90
2595 2737 1.001888 TAGCCCCGGTGTCCATGTA 59.998 57.895 0.00 0.00 0.00 2.29
2596 2738 2.285069 TAGCCCCGGTGTCCATGT 60.285 61.111 0.00 0.00 0.00 3.21
2597 2739 2.189521 GTAGCCCCGGTGTCCATG 59.810 66.667 0.00 0.00 0.00 3.66
2598 2740 3.467226 CGTAGCCCCGGTGTCCAT 61.467 66.667 0.00 0.00 0.00 3.41
2606 2748 3.849951 ATGTGAGCCGTAGCCCCG 61.850 66.667 0.00 0.00 41.25 5.73
2607 2749 2.203070 CATGTGAGCCGTAGCCCC 60.203 66.667 0.00 0.00 41.25 5.80
2608 2750 0.676782 AAACATGTGAGCCGTAGCCC 60.677 55.000 0.00 0.00 41.25 5.19
2609 2751 0.447801 CAAACATGTGAGCCGTAGCC 59.552 55.000 0.00 0.00 41.25 3.93
2610 2752 0.179189 GCAAACATGTGAGCCGTAGC 60.179 55.000 0.00 0.00 40.32 3.58
2611 2753 1.394917 GAGCAAACATGTGAGCCGTAG 59.605 52.381 16.54 0.00 0.00 3.51
2612 2754 1.270571 TGAGCAAACATGTGAGCCGTA 60.271 47.619 16.54 3.92 0.00 4.02
2613 2755 0.534877 TGAGCAAACATGTGAGCCGT 60.535 50.000 16.54 2.45 0.00 5.68
2614 2756 0.806868 ATGAGCAAACATGTGAGCCG 59.193 50.000 16.54 0.00 0.00 5.52
2615 2757 1.133790 GGATGAGCAAACATGTGAGCC 59.866 52.381 16.54 10.29 0.00 4.70
2616 2758 2.089980 AGGATGAGCAAACATGTGAGC 58.910 47.619 13.32 13.32 0.00 4.26
2617 2759 2.422479 CCAGGATGAGCAAACATGTGAG 59.578 50.000 0.00 0.00 39.69 3.51
2618 2760 2.224843 ACCAGGATGAGCAAACATGTGA 60.225 45.455 0.00 0.00 39.69 3.58
2619 2761 2.165167 ACCAGGATGAGCAAACATGTG 58.835 47.619 0.00 0.00 39.69 3.21
2620 2762 2.592102 ACCAGGATGAGCAAACATGT 57.408 45.000 0.00 0.00 39.69 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.