Multiple sequence alignment - TraesCS5D01G516600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G516600 chr5D 100.000 4263 0 0 1 4263 539030504 539034766 0.000000e+00 7873.0
1 TraesCS5D01G516600 chr5D 90.000 100 7 2 2328 2424 539032614 539032713 4.470000e-25 126.0
2 TraesCS5D01G516600 chr5D 90.000 100 7 2 2111 2210 539032831 539032927 4.470000e-25 126.0
3 TraesCS5D01G516600 chr5D 100.000 51 0 0 2271 2321 539032513 539032563 1.260000e-15 95.3
4 TraesCS5D01G516600 chr5D 100.000 51 0 0 2010 2060 539032774 539032824 1.260000e-15 95.3
5 TraesCS5D01G516600 chr5B 87.414 1311 89 34 2994 4263 680611679 680612954 0.000000e+00 1437.0
6 TraesCS5D01G516600 chr5B 93.462 520 34 0 41 560 271150179 271149660 0.000000e+00 773.0
7 TraesCS5D01G516600 chr5B 93.462 520 34 0 41 560 368804516 368803997 0.000000e+00 773.0
8 TraesCS5D01G516600 chr5B 93.269 520 35 0 41 560 479813907 479813388 0.000000e+00 767.0
9 TraesCS5D01G516600 chr5B 87.952 581 44 16 601 1174 680609179 680609740 0.000000e+00 662.0
10 TraesCS5D01G516600 chr5B 93.394 439 29 0 2544 2982 680611160 680611598 0.000000e+00 651.0
11 TraesCS5D01G516600 chr5B 90.437 366 16 3 1224 1570 680610019 680610384 8.350000e-127 464.0
12 TraesCS5D01G516600 chr5B 83.660 459 37 14 1770 2210 680610664 680611102 8.590000e-107 398.0
13 TraesCS5D01G516600 chr5B 91.176 238 20 1 1571 1808 680610432 680610668 5.320000e-84 322.0
14 TraesCS5D01G516600 chr5B 95.425 153 6 1 2341 2492 680611019 680611171 4.260000e-60 243.0
15 TraesCS5D01G516600 chr4A 86.600 1306 96 41 2994 4261 629469034 629467770 0.000000e+00 1369.0
16 TraesCS5D01G516600 chr4A 91.589 642 37 9 1689 2321 629470393 629469760 0.000000e+00 870.0
17 TraesCS5D01G516600 chr4A 94.423 520 29 0 41 560 609551865 609552384 0.000000e+00 800.0
18 TraesCS5D01G516600 chr4A 93.891 442 27 0 2544 2985 629469552 629469111 0.000000e+00 667.0
19 TraesCS5D01G516600 chr4A 87.500 584 39 17 601 1174 629471972 629471413 0.000000e+00 643.0
20 TraesCS5D01G516600 chr4A 93.617 376 19 4 1571 1945 629470880 629470509 1.340000e-154 556.0
21 TraesCS5D01G516600 chr4A 88.946 389 19 5 1206 1570 629471319 629470931 3.880000e-125 459.0
22 TraesCS5D01G516600 chr4A 91.262 206 12 3 2010 2212 629469810 629469608 4.200000e-70 276.0
23 TraesCS5D01G516600 chr4A 95.181 166 7 1 2328 2492 629469706 629469541 1.180000e-65 261.0
24 TraesCS5D01G516600 chr4A 92.000 100 5 2 2328 2424 629469965 629469866 2.070000e-28 137.0
25 TraesCS5D01G516600 chr1D 93.874 555 33 1 1 555 300317691 300318244 0.000000e+00 835.0
26 TraesCS5D01G516600 chr1A 93.462 520 34 0 41 560 501971750 501971231 0.000000e+00 773.0
27 TraesCS5D01G516600 chr1A 93.077 520 36 0 41 560 148614342 148613823 0.000000e+00 761.0
28 TraesCS5D01G516600 chr7A 93.592 515 33 0 41 555 731816015 731815501 0.000000e+00 769.0
29 TraesCS5D01G516600 chr7A 91.071 56 5 0 3285 3340 477234949 477234894 4.570000e-10 76.8
30 TraesCS5D01G516600 chr3A 93.077 520 36 0 41 560 741230628 741231147 0.000000e+00 761.0
31 TraesCS5D01G516600 chr3A 89.459 351 31 6 3591 3938 608340308 608340655 5.060000e-119 438.0
32 TraesCS5D01G516600 chr3A 100.000 42 0 0 2505 2546 726270642 726270601 1.270000e-10 78.7
33 TraesCS5D01G516600 chr3D 89.744 351 30 6 3591 3938 465021741 465022088 1.090000e-120 444.0
34 TraesCS5D01G516600 chr3D 94.231 52 2 1 3289 3340 574516540 574516590 1.270000e-10 78.7
35 TraesCS5D01G516600 chr3B 90.208 337 31 2 3603 3938 618434652 618434987 5.060000e-119 438.0
36 TraesCS5D01G516600 chr2B 88.235 85 10 0 1346 1430 339116760 339116676 7.540000e-18 102.0
37 TraesCS5D01G516600 chr2B 90.476 63 4 2 3279 3340 378436754 378436693 9.820000e-12 82.4
38 TraesCS5D01G516600 chr2D 96.226 53 1 1 3288 3340 80363471 80363420 7.590000e-13 86.1
39 TraesCS5D01G516600 chr2D 93.750 48 3 0 3293 3340 351290605 351290652 5.910000e-09 73.1
40 TraesCS5D01G516600 chr6A 91.667 60 5 0 3292 3351 101852181 101852240 2.730000e-12 84.2
41 TraesCS5D01G516600 chr5A 97.917 48 1 0 3293 3340 350464581 350464534 2.730000e-12 84.2
42 TraesCS5D01G516600 chr5A 100.000 41 0 0 2505 2545 47536429 47536389 4.570000e-10 76.8
43 TraesCS5D01G516600 chr5A 100.000 38 0 0 2478 2515 47536473 47536436 2.130000e-08 71.3
44 TraesCS5D01G516600 chr7D 92.982 57 2 2 3288 3343 98399968 98399913 9.820000e-12 82.4
45 TraesCS5D01G516600 chr7D 87.692 65 2 6 3294 3357 180730307 180730366 2.130000e-08 71.3
46 TraesCS5D01G516600 chr6D 100.000 41 0 0 2505 2545 363880817 363880857 4.570000e-10 76.8
47 TraesCS5D01G516600 chr7B 94.737 38 1 1 6 43 371997881 371997845 1.660000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G516600 chr5D 539030504 539034766 4262 False 1663.120000 7873 96.000000 1 4263 5 chr5D.!!$F1 4262
1 TraesCS5D01G516600 chr5B 271149660 271150179 519 True 773.000000 773 93.462000 41 560 1 chr5B.!!$R1 519
2 TraesCS5D01G516600 chr5B 368803997 368804516 519 True 773.000000 773 93.462000 41 560 1 chr5B.!!$R2 519
3 TraesCS5D01G516600 chr5B 479813388 479813907 519 True 767.000000 767 93.269000 41 560 1 chr5B.!!$R3 519
4 TraesCS5D01G516600 chr5B 680609179 680612954 3775 False 596.714286 1437 89.922571 601 4263 7 chr5B.!!$F1 3662
5 TraesCS5D01G516600 chr4A 609551865 609552384 519 False 800.000000 800 94.423000 41 560 1 chr4A.!!$F1 519
6 TraesCS5D01G516600 chr4A 629467770 629471972 4202 True 582.000000 1369 91.176222 601 4261 9 chr4A.!!$R1 3660
7 TraesCS5D01G516600 chr1D 300317691 300318244 553 False 835.000000 835 93.874000 1 555 1 chr1D.!!$F1 554
8 TraesCS5D01G516600 chr1A 501971231 501971750 519 True 773.000000 773 93.462000 41 560 1 chr1A.!!$R2 519
9 TraesCS5D01G516600 chr1A 148613823 148614342 519 True 761.000000 761 93.077000 41 560 1 chr1A.!!$R1 519
10 TraesCS5D01G516600 chr7A 731815501 731816015 514 True 769.000000 769 93.592000 41 555 1 chr7A.!!$R2 514
11 TraesCS5D01G516600 chr3A 741230628 741231147 519 False 761.000000 761 93.077000 41 560 1 chr3A.!!$F2 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 773 0.326713 GGGGAAGGAAGAGGGCTACT 60.327 60.0 0.00 0.0 0.0 2.57 F
1163 1174 0.028770 TTTCCTTTGCGCGTGAGTTG 59.971 50.0 8.43 0.0 0.0 3.16 F
2507 3264 0.032952 TACAACGTCAGGCCACACTC 59.967 55.0 5.01 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 3245 0.032952 GAGTGTGGCCTGACGTTGTA 59.967 55.0 3.32 0.0 0.0 2.41 R
2526 3283 0.105964 TAAGGGGCTGTTTGGTTGCA 60.106 50.0 0.00 0.0 0.0 4.08 R
3417 4261 0.950555 CTCTGTTGCTGCGTGCCTTA 60.951 55.0 0.00 0.0 42.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.640771 AATCCCTTCAAGTCAGCAAGTA 57.359 40.909 0.00 0.00 0.00 2.24
90 91 2.368875 GAGAAGGAGTTGTTGGTCCTCA 59.631 50.000 0.00 0.00 42.76 3.86
92 93 1.807814 AGGAGTTGTTGGTCCTCAGT 58.192 50.000 0.00 0.00 39.05 3.41
202 203 2.482336 GTGTCAATGTGTGCGAATACCA 59.518 45.455 0.00 0.00 0.00 3.25
227 228 9.651718 CAGATTAGTTTCCTAATAAAATGCGAC 57.348 33.333 0.00 0.00 42.61 5.19
343 344 5.067413 AGTTTCCTAAGAAGACGCGATCATA 59.933 40.000 15.93 4.65 32.35 2.15
423 424 8.359642 AGTCAATGTAAATTGTTAAGTGCACAT 58.640 29.630 21.04 10.23 33.49 3.21
467 468 6.323225 AGGCTAGCCGTTAGATTAAGTTTAGA 59.677 38.462 27.83 0.00 41.95 2.10
567 568 9.482627 GTTTAATAGTAGTGAAGATGGAGATGG 57.517 37.037 0.00 0.00 0.00 3.51
568 569 9.434275 TTTAATAGTAGTGAAGATGGAGATGGA 57.566 33.333 0.00 0.00 0.00 3.41
569 570 7.537596 AATAGTAGTGAAGATGGAGATGGAG 57.462 40.000 0.00 0.00 0.00 3.86
570 571 5.136068 AGTAGTGAAGATGGAGATGGAGA 57.864 43.478 0.00 0.00 0.00 3.71
571 572 5.714863 AGTAGTGAAGATGGAGATGGAGAT 58.285 41.667 0.00 0.00 0.00 2.75
572 573 4.959560 AGTGAAGATGGAGATGGAGATG 57.040 45.455 0.00 0.00 0.00 2.90
573 574 4.554683 AGTGAAGATGGAGATGGAGATGA 58.445 43.478 0.00 0.00 0.00 2.92
574 575 4.967442 AGTGAAGATGGAGATGGAGATGAA 59.033 41.667 0.00 0.00 0.00 2.57
575 576 5.427806 AGTGAAGATGGAGATGGAGATGAAA 59.572 40.000 0.00 0.00 0.00 2.69
576 577 6.101442 AGTGAAGATGGAGATGGAGATGAAAT 59.899 38.462 0.00 0.00 0.00 2.17
577 578 6.205076 GTGAAGATGGAGATGGAGATGAAATG 59.795 42.308 0.00 0.00 0.00 2.32
578 579 5.908562 AGATGGAGATGGAGATGAAATGT 57.091 39.130 0.00 0.00 0.00 2.71
579 580 6.263412 AGATGGAGATGGAGATGAAATGTT 57.737 37.500 0.00 0.00 0.00 2.71
580 581 6.670617 AGATGGAGATGGAGATGAAATGTTT 58.329 36.000 0.00 0.00 0.00 2.83
581 582 6.546403 AGATGGAGATGGAGATGAAATGTTTG 59.454 38.462 0.00 0.00 0.00 2.93
582 583 5.818887 TGGAGATGGAGATGAAATGTTTGA 58.181 37.500 0.00 0.00 0.00 2.69
583 584 6.429151 TGGAGATGGAGATGAAATGTTTGAT 58.571 36.000 0.00 0.00 0.00 2.57
584 585 6.320418 TGGAGATGGAGATGAAATGTTTGATG 59.680 38.462 0.00 0.00 0.00 3.07
585 586 6.544931 GGAGATGGAGATGAAATGTTTGATGA 59.455 38.462 0.00 0.00 0.00 2.92
586 587 7.067859 GGAGATGGAGATGAAATGTTTGATGAA 59.932 37.037 0.00 0.00 0.00 2.57
587 588 8.534954 AGATGGAGATGAAATGTTTGATGAAT 57.465 30.769 0.00 0.00 0.00 2.57
588 589 9.636789 AGATGGAGATGAAATGTTTGATGAATA 57.363 29.630 0.00 0.00 0.00 1.75
589 590 9.674824 GATGGAGATGAAATGTTTGATGAATAC 57.325 33.333 0.00 0.00 0.00 1.89
590 591 8.812513 TGGAGATGAAATGTTTGATGAATACT 57.187 30.769 0.00 0.00 0.00 2.12
591 592 8.896744 TGGAGATGAAATGTTTGATGAATACTC 58.103 33.333 0.00 0.00 0.00 2.59
592 593 8.348507 GGAGATGAAATGTTTGATGAATACTCC 58.651 37.037 0.00 0.00 0.00 3.85
593 594 9.118300 GAGATGAAATGTTTGATGAATACTCCT 57.882 33.333 0.00 0.00 0.00 3.69
596 597 9.685276 ATGAAATGTTTGATGAATACTCCTACA 57.315 29.630 0.00 0.00 0.00 2.74
597 598 9.513906 TGAAATGTTTGATGAATACTCCTACAA 57.486 29.630 0.00 0.00 0.00 2.41
598 599 9.774742 GAAATGTTTGATGAATACTCCTACAAC 57.225 33.333 0.00 0.00 0.00 3.32
599 600 6.961359 TGTTTGATGAATACTCCTACAACG 57.039 37.500 0.00 0.00 0.00 4.10
603 604 4.098960 TGATGAATACTCCTACAACGGACC 59.901 45.833 0.00 0.00 0.00 4.46
612 613 3.952323 TCCTACAACGGACCATCTAGAAG 59.048 47.826 0.00 0.00 0.00 2.85
616 617 0.824759 ACGGACCATCTAGAAGCACC 59.175 55.000 0.00 0.00 0.00 5.01
630 631 3.663176 CACCCACGTGCCTTGCAG 61.663 66.667 10.91 0.00 40.08 4.41
655 656 0.762418 TTCCTCCCTTTGCTTCACGA 59.238 50.000 0.00 0.00 0.00 4.35
657 658 1.291877 CCTCCCTTTGCTTCACGACG 61.292 60.000 0.00 0.00 0.00 5.12
658 659 1.901650 CTCCCTTTGCTTCACGACGC 61.902 60.000 0.00 0.00 0.00 5.19
659 660 2.170985 CCTTTGCTTCACGACGCG 59.829 61.111 3.53 3.53 0.00 6.01
660 661 2.594962 CCTTTGCTTCACGACGCGT 61.595 57.895 13.85 13.85 42.36 6.01
661 662 1.279527 CCTTTGCTTCACGACGCGTA 61.280 55.000 13.97 0.00 38.32 4.42
684 685 1.722464 CAATGATGCCAAGTTGCAACG 59.278 47.619 23.21 10.99 45.84 4.10
686 687 1.007502 GATGCCAAGTTGCAACGCA 60.008 52.632 25.84 25.84 45.84 5.24
687 688 0.388907 GATGCCAAGTTGCAACGCAT 60.389 50.000 30.88 30.88 45.84 4.73
688 689 0.668096 ATGCCAAGTTGCAACGCATG 60.668 50.000 30.28 25.02 45.84 4.06
760 762 3.702048 CGCACGAAGGGGGAAGGA 61.702 66.667 0.00 0.00 0.00 3.36
762 764 1.377333 GCACGAAGGGGGAAGGAAG 60.377 63.158 0.00 0.00 0.00 3.46
763 765 1.838073 GCACGAAGGGGGAAGGAAGA 61.838 60.000 0.00 0.00 0.00 2.87
767 769 1.927569 GAAGGGGGAAGGAAGAGGGC 61.928 65.000 0.00 0.00 0.00 5.19
768 770 2.286502 GGGGGAAGGAAGAGGGCT 60.287 66.667 0.00 0.00 0.00 5.19
770 772 1.346479 GGGGGAAGGAAGAGGGCTAC 61.346 65.000 0.00 0.00 0.00 3.58
771 773 0.326713 GGGGAAGGAAGAGGGCTACT 60.327 60.000 0.00 0.00 0.00 2.57
772 774 1.585895 GGGAAGGAAGAGGGCTACTT 58.414 55.000 0.00 0.00 0.00 2.24
780 782 3.244946 GGAAGAGGGCTACTTGGAAAACT 60.245 47.826 2.04 0.00 0.00 2.66
910 912 1.300233 GATCTGATCCGCGGGTGTC 60.300 63.158 27.83 20.68 0.00 3.67
1021 1027 2.029110 CACCCACCCAGCAGTAATTTTG 60.029 50.000 0.00 0.00 0.00 2.44
1029 1039 6.016555 ACCCAGCAGTAATTTTGTTATCCTT 58.983 36.000 0.00 0.00 0.00 3.36
1065 1075 2.127194 CGAGATCGTCGCCGGATC 60.127 66.667 5.05 0.00 43.03 3.36
1150 1161 3.763897 CGAGTCAAATTCCCCATTTCCTT 59.236 43.478 0.00 0.00 32.24 3.36
1153 1164 4.002982 GTCAAATTCCCCATTTCCTTTGC 58.997 43.478 0.00 0.00 32.24 3.68
1156 1167 1.872197 TTCCCCATTTCCTTTGCGCG 61.872 55.000 0.00 0.00 0.00 6.86
1163 1174 0.028770 TTTCCTTTGCGCGTGAGTTG 59.971 50.000 8.43 0.00 0.00 3.16
1165 1176 2.427410 CTTTGCGCGTGAGTTGGC 60.427 61.111 8.43 0.00 0.00 4.52
1186 1217 1.586028 CGGCACTGTGGGATTTTGG 59.414 57.895 10.21 0.00 0.00 3.28
1195 1226 6.295067 GCACTGTGGGATTTTGGTAAATACTT 60.295 38.462 10.21 0.00 35.32 2.24
1196 1227 7.090173 CACTGTGGGATTTTGGTAAATACTTG 58.910 38.462 0.00 0.00 35.32 3.16
1197 1228 7.007723 ACTGTGGGATTTTGGTAAATACTTGA 58.992 34.615 0.00 0.00 35.32 3.02
1199 1230 7.835822 TGTGGGATTTTGGTAAATACTTGATG 58.164 34.615 0.00 0.00 35.32 3.07
1200 1231 7.453126 TGTGGGATTTTGGTAAATACTTGATGT 59.547 33.333 0.00 0.00 35.32 3.06
1201 1232 8.962679 GTGGGATTTTGGTAAATACTTGATGTA 58.037 33.333 0.00 0.00 35.32 2.29
1202 1233 9.184523 TGGGATTTTGGTAAATACTTGATGTAG 57.815 33.333 0.00 0.00 35.32 2.74
1203 1234 8.135529 GGGATTTTGGTAAATACTTGATGTAGC 58.864 37.037 0.00 0.00 35.32 3.58
1212 1288 6.469782 AATACTTGATGTAGCATTTTGGGG 57.530 37.500 0.00 0.00 34.24 4.96
1222 1462 3.148412 AGCATTTTGGGGATTTTTGCAC 58.852 40.909 0.00 0.00 0.00 4.57
1256 1496 0.527600 CATTAGGCTCGCGTGTGCTA 60.528 55.000 20.88 9.76 39.65 3.49
1260 1500 1.065928 GGCTCGCGTGTGCTATAGT 59.934 57.895 20.88 0.00 39.65 2.12
1274 1514 2.348591 GCTATAGTGATTGTTTCGCGGC 60.349 50.000 6.13 0.00 39.93 6.53
1283 1523 0.605319 TGTTTCGCGGCTTTGATCCT 60.605 50.000 6.13 0.00 0.00 3.24
1458 1726 4.143333 GCGAGCCCGGAAGCTACA 62.143 66.667 0.73 0.00 45.15 2.74
1480 1748 4.704833 GGAGGCAGCAACCGCAGA 62.705 66.667 0.00 0.00 42.27 4.26
1638 1956 3.049206 CCTTGTTTTGTACATGTTGCGG 58.951 45.455 2.30 0.00 36.44 5.69
1666 1984 0.532862 GTGCTGGCATATGGTAGCGT 60.533 55.000 4.56 0.00 38.96 5.07
1723 2042 1.134175 GAACCACCACCACAAGTGTTG 59.866 52.381 0.00 0.00 45.74 3.33
1736 2055 6.151985 ACCACAAGTGTTGTCTATGAAAACAA 59.848 34.615 5.05 0.00 40.81 2.83
1796 2484 4.471025 TGGTTGCATTTCATCCTCTCTAGA 59.529 41.667 0.00 0.00 35.90 2.43
1813 2515 7.013750 CCTCTCTAGAAGCCAACTTTTCTTTTT 59.986 37.037 0.00 0.00 35.82 1.94
1873 2575 3.321968 TGTGGCATGATACTAGTAGCTGG 59.678 47.826 18.38 11.45 0.00 4.85
1913 2615 5.030295 GTGCATTTATGTCGGAATGTTCTG 58.970 41.667 0.00 0.00 36.03 3.02
1916 2618 6.183360 TGCATTTATGTCGGAATGTTCTGTAC 60.183 38.462 1.82 0.00 36.03 2.90
1918 2620 7.223971 GCATTTATGTCGGAATGTTCTGTACTA 59.776 37.037 0.00 0.00 36.03 1.82
1920 2622 9.832445 ATTTATGTCGGAATGTTCTGTACTATT 57.168 29.630 0.00 0.00 35.11 1.73
1928 2630 8.175716 CGGAATGTTCTGTACTATTTCCTTTTC 58.824 37.037 0.00 0.00 33.02 2.29
1953 2658 7.975616 TCTTCTTTCCATTTAATTGCATACTGC 59.024 33.333 0.00 0.00 45.29 4.40
1954 2659 7.408756 TCTTTCCATTTAATTGCATACTGCT 57.591 32.000 0.34 0.00 45.31 4.24
2072 2779 5.335426 CCTGTGGAAGTTTCATGATCACTTG 60.335 44.000 20.29 9.31 30.71 3.16
2086 2796 2.564771 TCACTTGTCCACTTTCTGCTG 58.435 47.619 0.00 0.00 0.00 4.41
2125 2835 4.911514 TTTAGCCCTGTTTCTTTGTCAC 57.088 40.909 0.00 0.00 0.00 3.67
2198 2908 0.759959 TGGCTGTAGAACGGGAACAA 59.240 50.000 0.00 0.00 0.00 2.83
2221 2931 9.796062 ACAACATAAGTTTGTTAATTACGTACG 57.204 29.630 15.01 15.01 37.73 3.67
2222 2932 9.796062 CAACATAAGTTTGTTAATTACGTACGT 57.204 29.630 25.98 25.98 37.73 3.57
2267 2977 5.393962 AGTCAATTTTGAGTTTAGCGCATC 58.606 37.500 11.47 0.00 37.57 3.91
2321 3031 2.614057 GTTGAGTGACCTGTGGAAGTTG 59.386 50.000 0.00 0.00 0.00 3.16
2322 3032 2.115427 TGAGTGACCTGTGGAAGTTGA 58.885 47.619 0.00 0.00 0.00 3.18
2323 3033 2.103094 TGAGTGACCTGTGGAAGTTGAG 59.897 50.000 0.00 0.00 0.00 3.02
2333 3090 3.279434 GTGGAAGTTGAGTGACCTGTTT 58.721 45.455 0.00 0.00 0.00 2.83
2356 3113 4.697828 TCTTTGTTGTGATGGCGCTAATTA 59.302 37.500 7.64 0.00 0.00 1.40
2483 3240 5.954150 AGGTGTATGCAATCTTCCTCAATTT 59.046 36.000 0.00 0.00 0.00 1.82
2485 3242 7.781693 AGGTGTATGCAATCTTCCTCAATTTAT 59.218 33.333 0.00 0.00 0.00 1.40
2486 3243 7.864379 GGTGTATGCAATCTTCCTCAATTTATG 59.136 37.037 0.00 0.00 0.00 1.90
2487 3244 8.623903 GTGTATGCAATCTTCCTCAATTTATGA 58.376 33.333 0.00 0.00 36.38 2.15
2488 3245 9.358406 TGTATGCAATCTTCCTCAATTTATGAT 57.642 29.630 0.00 0.00 37.44 2.45
2491 3248 8.750515 TGCAATCTTCCTCAATTTATGATACA 57.249 30.769 0.00 0.00 37.44 2.29
2492 3249 9.187996 TGCAATCTTCCTCAATTTATGATACAA 57.812 29.630 0.00 0.00 37.44 2.41
2493 3250 9.455847 GCAATCTTCCTCAATTTATGATACAAC 57.544 33.333 0.00 0.00 37.44 3.32
2494 3251 9.655769 CAATCTTCCTCAATTTATGATACAACG 57.344 33.333 0.00 0.00 37.44 4.10
2495 3252 8.964476 ATCTTCCTCAATTTATGATACAACGT 57.036 30.769 0.00 0.00 37.44 3.99
2496 3253 8.420374 TCTTCCTCAATTTATGATACAACGTC 57.580 34.615 0.00 0.00 37.44 4.34
2497 3254 8.038351 TCTTCCTCAATTTATGATACAACGTCA 58.962 33.333 0.00 0.00 37.44 4.35
2498 3255 7.770801 TCCTCAATTTATGATACAACGTCAG 57.229 36.000 0.00 0.00 37.44 3.51
2499 3256 6.761242 TCCTCAATTTATGATACAACGTCAGG 59.239 38.462 0.00 0.00 37.44 3.86
2500 3257 6.358118 TCAATTTATGATACAACGTCAGGC 57.642 37.500 0.00 0.00 31.50 4.85
2501 3258 5.295787 TCAATTTATGATACAACGTCAGGCC 59.704 40.000 0.00 0.00 31.50 5.19
2502 3259 3.897141 TTATGATACAACGTCAGGCCA 57.103 42.857 5.01 0.00 0.00 5.36
2503 3260 2.024176 ATGATACAACGTCAGGCCAC 57.976 50.000 5.01 0.00 0.00 5.01
2504 3261 0.682292 TGATACAACGTCAGGCCACA 59.318 50.000 5.01 0.00 0.00 4.17
2505 3262 1.076332 GATACAACGTCAGGCCACAC 58.924 55.000 5.01 0.00 0.00 3.82
2506 3263 0.685097 ATACAACGTCAGGCCACACT 59.315 50.000 5.01 0.00 0.00 3.55
2507 3264 0.032952 TACAACGTCAGGCCACACTC 59.967 55.000 5.01 0.00 0.00 3.51
2508 3265 1.227527 CAACGTCAGGCCACACTCA 60.228 57.895 5.01 0.00 0.00 3.41
2509 3266 1.069765 AACGTCAGGCCACACTCAG 59.930 57.895 5.01 0.00 0.00 3.35
2510 3267 2.047844 CGTCAGGCCACACTCAGG 60.048 66.667 5.01 0.00 0.00 3.86
2517 3274 3.900855 CCACACTCAGGCATGCTC 58.099 61.111 18.92 7.89 0.00 4.26
2518 3275 1.748122 CCACACTCAGGCATGCTCC 60.748 63.158 18.92 1.03 0.00 4.70
2519 3276 1.298993 CACACTCAGGCATGCTCCT 59.701 57.895 18.92 3.85 36.78 3.69
2520 3277 0.743701 CACACTCAGGCATGCTCCTC 60.744 60.000 18.92 0.00 33.25 3.71
2521 3278 1.196766 ACACTCAGGCATGCTCCTCA 61.197 55.000 18.92 0.00 33.25 3.86
2522 3279 0.462225 CACTCAGGCATGCTCCTCAG 60.462 60.000 18.92 5.42 33.25 3.35
2523 3280 1.146485 CTCAGGCATGCTCCTCAGG 59.854 63.158 18.92 0.00 33.25 3.86
2524 3281 2.192443 CAGGCATGCTCCTCAGGG 59.808 66.667 18.92 0.00 33.25 4.45
2525 3282 2.285969 AGGCATGCTCCTCAGGGT 60.286 61.111 18.92 0.00 0.00 4.34
2526 3283 1.927527 AGGCATGCTCCTCAGGGTT 60.928 57.895 18.92 0.00 0.00 4.11
2527 3284 1.751927 GGCATGCTCCTCAGGGTTG 60.752 63.158 18.92 0.00 0.00 3.77
2528 3285 2.413142 GCATGCTCCTCAGGGTTGC 61.413 63.158 11.37 0.00 35.23 4.17
2529 3286 1.001764 CATGCTCCTCAGGGTTGCA 60.002 57.895 8.92 8.92 42.84 4.08
2530 3287 0.609957 CATGCTCCTCAGGGTTGCAA 60.610 55.000 10.23 0.00 42.35 4.08
2531 3288 0.610232 ATGCTCCTCAGGGTTGCAAC 60.610 55.000 21.59 21.59 42.35 4.17
2541 3298 4.436515 GTTGCAACCAAACAGCCC 57.563 55.556 19.15 0.00 31.68 5.19
2542 3299 1.227527 GTTGCAACCAAACAGCCCC 60.228 57.895 19.15 0.00 31.68 5.80
2543 3300 1.382420 TTGCAACCAAACAGCCCCT 60.382 52.632 0.00 0.00 0.00 4.79
2544 3301 0.980231 TTGCAACCAAACAGCCCCTT 60.980 50.000 0.00 0.00 0.00 3.95
2545 3302 0.105964 TGCAACCAAACAGCCCCTTA 60.106 50.000 0.00 0.00 0.00 2.69
2546 3303 0.603065 GCAACCAAACAGCCCCTTAG 59.397 55.000 0.00 0.00 0.00 2.18
2564 3321 5.182001 CCCTTAGTTGATACATTATGCAGCC 59.818 44.000 0.00 0.00 0.00 4.85
2566 3323 6.432162 CCTTAGTTGATACATTATGCAGCCAT 59.568 38.462 0.00 0.00 35.44 4.40
2597 3354 5.008217 TGGTATGGTGATTGCTTTATTACGC 59.992 40.000 0.00 0.00 0.00 4.42
2664 3421 1.789078 GCAGGTGTTCAGTGCCAGTG 61.789 60.000 0.00 0.00 0.00 3.66
2675 3432 1.079197 TGCCAGTGCCTATGACACG 60.079 57.895 0.00 0.00 42.94 4.49
2707 3464 4.335400 TTCTTGTTTCCATCCCTTTTGC 57.665 40.909 0.00 0.00 0.00 3.68
2720 3477 1.919918 CCTTTTGCGCGGATTCAAATC 59.080 47.619 8.83 0.00 32.92 2.17
2728 3485 3.757184 CGCGGATTCAAATCAACATTCA 58.243 40.909 0.00 0.00 37.15 2.57
2894 3651 4.619394 CGAATCAGTCTTCAGCCAGTTACT 60.619 45.833 0.00 0.00 0.00 2.24
2938 3695 2.916423 GATGACTGATCGCGCGTG 59.084 61.111 30.98 14.79 0.00 5.34
2952 3709 2.436646 CGTGGACATGCCCAGGTC 60.437 66.667 12.13 4.61 41.00 3.85
2953 3710 2.436646 GTGGACATGCCCAGGTCG 60.437 66.667 0.00 0.00 42.48 4.79
2959 3716 3.055719 ATGCCCAGGTCGTTTGCG 61.056 61.111 0.00 0.00 39.92 4.85
2963 3720 2.317609 CCCAGGTCGTTTGCGTCAG 61.318 63.158 0.00 0.00 39.49 3.51
2975 3732 1.174078 TGCGTCAGAGTACAACCGGA 61.174 55.000 9.46 0.00 0.00 5.14
2985 3742 2.838202 AGTACAACCGGATCAAGGACAT 59.162 45.455 9.46 1.32 0.00 3.06
2986 3743 2.113860 ACAACCGGATCAAGGACATG 57.886 50.000 9.46 10.32 0.00 3.21
2988 3745 0.620556 AACCGGATCAAGGACATGCT 59.379 50.000 9.46 0.00 0.00 3.79
2990 3747 0.467384 CCGGATCAAGGACATGCTCT 59.533 55.000 0.00 0.00 0.00 4.09
2991 3748 1.579698 CGGATCAAGGACATGCTCTG 58.420 55.000 0.00 0.00 0.00 3.35
2992 3749 1.307097 GGATCAAGGACATGCTCTGC 58.693 55.000 0.00 0.00 0.00 4.26
3070 3897 1.079127 CACCCTCGGCTTGTACAGG 60.079 63.158 0.00 0.00 0.00 4.00
3071 3898 1.229082 ACCCTCGGCTTGTACAGGA 60.229 57.895 9.51 0.00 0.00 3.86
3127 3968 5.494724 CACCTTCCTCATTGAGATTGAGAA 58.505 41.667 15.36 8.37 42.63 2.87
3129 3970 6.038382 CACCTTCCTCATTGAGATTGAGAATG 59.962 42.308 15.36 8.71 42.63 2.67
3138 3979 9.755804 TCATTGAGATTGAGAATGTACTCATAC 57.244 33.333 0.00 0.00 44.67 2.39
3181 4022 2.135933 CGATTCTTTCTATCCGCCACC 58.864 52.381 0.00 0.00 0.00 4.61
3182 4023 2.224066 CGATTCTTTCTATCCGCCACCT 60.224 50.000 0.00 0.00 0.00 4.00
3183 4024 3.741388 CGATTCTTTCTATCCGCCACCTT 60.741 47.826 0.00 0.00 0.00 3.50
3184 4025 2.981859 TCTTTCTATCCGCCACCTTC 57.018 50.000 0.00 0.00 0.00 3.46
3186 4027 1.486726 CTTTCTATCCGCCACCTTCCT 59.513 52.381 0.00 0.00 0.00 3.36
3188 4029 0.032515 TCTATCCGCCACCTTCCTCA 60.033 55.000 0.00 0.00 0.00 3.86
3190 4031 1.417890 CTATCCGCCACCTTCCTCATT 59.582 52.381 0.00 0.00 0.00 2.57
3220 4063 1.438651 TTCGGTGGAGCAATTTCTCG 58.561 50.000 0.00 0.00 33.98 4.04
3222 4065 1.803289 GGTGGAGCAATTTCTCGGC 59.197 57.895 0.00 0.00 33.98 5.54
3301 4145 7.642071 CTTTTGCAAGCATGTGTTATTAGTT 57.358 32.000 0.00 0.00 0.00 2.24
3302 4146 8.741101 CTTTTGCAAGCATGTGTTATTAGTTA 57.259 30.769 0.00 0.00 0.00 2.24
3303 4147 8.514136 TTTTGCAAGCATGTGTTATTAGTTAC 57.486 30.769 0.00 0.00 0.00 2.50
3305 4149 7.072177 TGCAAGCATGTGTTATTAGTTACTC 57.928 36.000 0.00 0.00 0.00 2.59
3306 4150 6.093495 TGCAAGCATGTGTTATTAGTTACTCC 59.907 38.462 0.00 0.00 0.00 3.85
3307 4151 6.458342 GCAAGCATGTGTTATTAGTTACTCCC 60.458 42.308 0.00 0.00 0.00 4.30
3309 4153 6.583562 AGCATGTGTTATTAGTTACTCCCTC 58.416 40.000 0.00 0.00 0.00 4.30
3310 4154 5.758784 GCATGTGTTATTAGTTACTCCCTCC 59.241 44.000 0.00 0.00 0.00 4.30
3313 4157 5.126061 TGTGTTATTAGTTACTCCCTCCGTC 59.874 44.000 0.00 0.00 0.00 4.79
3314 4158 4.646492 TGTTATTAGTTACTCCCTCCGTCC 59.354 45.833 0.00 0.00 0.00 4.79
3318 4162 1.572415 AGTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
3319 4163 2.023695 AGTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
3320 4164 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
3323 4167 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3324 4168 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3325 4169 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3326 4170 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3327 4171 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3328 4172 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3329 4173 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3330 4174 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3331 4175 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3332 4176 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3333 4177 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3334 4178 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3335 4179 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3336 4180 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3337 4181 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3338 4182 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3359 4203 7.274447 TGACACATCATCAGAATATAAGCACA 58.726 34.615 0.00 0.00 0.00 4.57
3360 4204 7.935210 TGACACATCATCAGAATATAAGCACAT 59.065 33.333 0.00 0.00 0.00 3.21
3364 4208 8.155510 ACATCATCAGAATATAAGCACATGAGT 58.844 33.333 0.00 0.00 0.00 3.41
3417 4261 3.648507 AGGAGAGAAAGCAGCATGAAT 57.351 42.857 0.00 0.00 39.69 2.57
3422 4294 3.631227 AGAGAAAGCAGCATGAATAAGGC 59.369 43.478 0.00 0.00 39.69 4.35
3429 4301 0.593263 GCATGAATAAGGCACGCAGC 60.593 55.000 0.00 0.00 44.65 5.25
3440 4312 2.109799 ACGCAGCAACAGAGCACT 59.890 55.556 0.00 0.00 36.85 4.40
3442 4314 1.957695 CGCAGCAACAGAGCACTGA 60.958 57.895 18.54 0.00 46.03 3.41
3443 4315 1.573436 GCAGCAACAGAGCACTGAC 59.427 57.895 18.54 6.80 46.03 3.51
3526 4398 5.767168 AGTTTCTGTCAGGAATCCTTGAAAG 59.233 40.000 0.00 5.87 0.00 2.62
3531 4403 6.488006 TCTGTCAGGAATCCTTGAAAGAAAAG 59.512 38.462 14.92 5.63 29.04 2.27
3545 4421 9.521503 CTTGAAAGAAAAGGTAGAAGAAAAAGG 57.478 33.333 0.00 0.00 0.00 3.11
3760 4636 3.749064 TCCACGGAGCTCAGCGTC 61.749 66.667 17.19 0.00 0.00 5.19
4036 4918 2.743928 CCGCTGAAGGAGGTGTGC 60.744 66.667 0.00 0.00 0.00 4.57
4053 4935 4.154347 CAGCTGGCTCGTCCTCCC 62.154 72.222 5.57 0.00 35.26 4.30
4071 4953 1.746615 CCTGGCACGATGAACCTGG 60.747 63.158 0.00 0.00 36.40 4.45
4076 4958 1.401905 GGCACGATGAACCTGGAAATC 59.598 52.381 0.00 0.00 0.00 2.17
4077 4959 2.083774 GCACGATGAACCTGGAAATCA 58.916 47.619 0.00 2.22 0.00 2.57
4090 4972 3.689347 TGGAAATCAGGAATGGTGTCAG 58.311 45.455 0.00 0.00 0.00 3.51
4092 4974 4.202556 TGGAAATCAGGAATGGTGTCAGAA 60.203 41.667 0.00 0.00 0.00 3.02
4094 4976 5.335976 GGAAATCAGGAATGGTGTCAGAAAC 60.336 44.000 0.00 0.00 0.00 2.78
4104 4986 7.094205 GGAATGGTGTCAGAAACATACTGAAAT 60.094 37.037 0.00 0.00 44.29 2.17
4107 4989 8.006298 TGGTGTCAGAAACATACTGAAATTTT 57.994 30.769 0.00 0.00 44.29 1.82
4108 4990 9.126151 TGGTGTCAGAAACATACTGAAATTTTA 57.874 29.630 0.00 0.00 44.29 1.52
4133 5018 2.819115 AGATTCATAGAGTGCACGCTG 58.181 47.619 30.32 17.12 0.00 5.18
4154 5039 5.622914 GCTGCAATGTTGTCCATTCTACAAT 60.623 40.000 0.00 0.00 41.93 2.71
4170 5055 6.749216 TCTACAATACGATTTGCGATCTTC 57.251 37.500 0.00 0.00 44.57 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.207329 GGAGTGCCGGTAATTCTCTGT 59.793 52.381 1.90 0.00 0.00 3.41
122 123 0.387565 CCCAAGAAAAACCACCACGG 59.612 55.000 0.00 0.00 42.50 4.94
123 124 1.336755 CTCCCAAGAAAAACCACCACG 59.663 52.381 0.00 0.00 0.00 4.94
167 168 1.153823 GACACGTCCATCACCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
227 228 6.454715 GCGTTTTATTAGGAAACTAGTCACGG 60.455 42.308 0.00 0.00 45.45 4.94
284 285 6.032717 GCGTCTTCGTAGGAAACTAATTACT 58.967 40.000 0.00 0.00 46.54 2.24
287 288 3.855950 CGCGTCTTCGTAGGAAACTAATT 59.144 43.478 0.00 0.00 46.54 1.40
343 344 9.204570 CGTCCGATCAATTAGGAAACTATAATT 57.795 33.333 0.00 0.00 43.94 1.40
423 424 7.038941 GCTAGCCTTAACCTAATCCATTCTCTA 60.039 40.741 2.29 0.00 0.00 2.43
467 468 0.546122 TGACCGCATGATTAAGCCCT 59.454 50.000 0.00 0.00 0.00 5.19
560 561 6.544931 TCATCAAACATTTCATCTCCATCTCC 59.455 38.462 0.00 0.00 0.00 3.71
561 562 7.563888 TCATCAAACATTTCATCTCCATCTC 57.436 36.000 0.00 0.00 0.00 2.75
562 563 7.949690 TTCATCAAACATTTCATCTCCATCT 57.050 32.000 0.00 0.00 0.00 2.90
563 564 9.674824 GTATTCATCAAACATTTCATCTCCATC 57.325 33.333 0.00 0.00 0.00 3.51
564 565 9.417561 AGTATTCATCAAACATTTCATCTCCAT 57.582 29.630 0.00 0.00 0.00 3.41
565 566 8.812513 AGTATTCATCAAACATTTCATCTCCA 57.187 30.769 0.00 0.00 0.00 3.86
566 567 8.348507 GGAGTATTCATCAAACATTTCATCTCC 58.651 37.037 0.00 0.00 0.00 3.71
567 568 9.118300 AGGAGTATTCATCAAACATTTCATCTC 57.882 33.333 0.00 0.00 0.00 2.75
570 571 9.685276 TGTAGGAGTATTCATCAAACATTTCAT 57.315 29.630 0.00 0.00 0.00 2.57
571 572 9.513906 TTGTAGGAGTATTCATCAAACATTTCA 57.486 29.630 0.00 0.00 0.00 2.69
572 573 9.774742 GTTGTAGGAGTATTCATCAAACATTTC 57.225 33.333 0.00 0.00 0.00 2.17
573 574 8.450964 CGTTGTAGGAGTATTCATCAAACATTT 58.549 33.333 0.00 0.00 0.00 2.32
574 575 7.065803 CCGTTGTAGGAGTATTCATCAAACATT 59.934 37.037 0.00 0.00 0.00 2.71
575 576 6.538742 CCGTTGTAGGAGTATTCATCAAACAT 59.461 38.462 0.00 0.00 0.00 2.71
576 577 5.872617 CCGTTGTAGGAGTATTCATCAAACA 59.127 40.000 0.00 0.00 0.00 2.83
577 578 6.035758 GTCCGTTGTAGGAGTATTCATCAAAC 59.964 42.308 0.00 0.00 41.68 2.93
578 579 6.103997 GTCCGTTGTAGGAGTATTCATCAAA 58.896 40.000 0.00 0.00 41.68 2.69
579 580 5.394883 GGTCCGTTGTAGGAGTATTCATCAA 60.395 44.000 0.00 0.00 41.68 2.57
580 581 4.098960 GGTCCGTTGTAGGAGTATTCATCA 59.901 45.833 0.00 0.00 41.68 3.07
581 582 4.098960 TGGTCCGTTGTAGGAGTATTCATC 59.901 45.833 0.00 0.00 41.68 2.92
582 583 4.028131 TGGTCCGTTGTAGGAGTATTCAT 58.972 43.478 0.00 0.00 41.68 2.57
583 584 3.433343 TGGTCCGTTGTAGGAGTATTCA 58.567 45.455 0.00 0.00 41.68 2.57
584 585 4.341520 AGATGGTCCGTTGTAGGAGTATTC 59.658 45.833 0.00 0.00 41.68 1.75
585 586 4.287552 AGATGGTCCGTTGTAGGAGTATT 58.712 43.478 0.00 0.00 41.68 1.89
586 587 3.912248 AGATGGTCCGTTGTAGGAGTAT 58.088 45.455 0.00 0.00 41.68 2.12
587 588 3.377253 AGATGGTCCGTTGTAGGAGTA 57.623 47.619 0.00 0.00 41.68 2.59
588 589 2.233305 AGATGGTCCGTTGTAGGAGT 57.767 50.000 0.00 0.00 41.68 3.85
589 590 3.552875 TCTAGATGGTCCGTTGTAGGAG 58.447 50.000 0.00 0.00 41.68 3.69
590 591 3.657398 TCTAGATGGTCCGTTGTAGGA 57.343 47.619 0.00 0.00 38.11 2.94
591 592 3.491104 GCTTCTAGATGGTCCGTTGTAGG 60.491 52.174 7.66 0.00 0.00 3.18
592 593 3.130516 TGCTTCTAGATGGTCCGTTGTAG 59.869 47.826 7.66 0.00 0.00 2.74
593 594 3.093814 TGCTTCTAGATGGTCCGTTGTA 58.906 45.455 7.66 0.00 0.00 2.41
594 595 1.899814 TGCTTCTAGATGGTCCGTTGT 59.100 47.619 7.66 0.00 0.00 3.32
595 596 2.271800 GTGCTTCTAGATGGTCCGTTG 58.728 52.381 7.66 0.00 0.00 4.10
596 597 1.207329 GGTGCTTCTAGATGGTCCGTT 59.793 52.381 7.66 0.00 0.00 4.44
597 598 0.824759 GGTGCTTCTAGATGGTCCGT 59.175 55.000 7.66 0.00 0.00 4.69
598 599 0.105039 GGGTGCTTCTAGATGGTCCG 59.895 60.000 7.66 0.00 0.00 4.79
599 600 1.134371 GTGGGTGCTTCTAGATGGTCC 60.134 57.143 7.66 2.63 0.00 4.46
603 604 1.645034 CACGTGGGTGCTTCTAGATG 58.355 55.000 7.95 0.00 37.35 2.90
630 631 1.674651 GCAAAGGGAGGAACCGTCC 60.675 63.158 0.00 0.00 45.35 4.79
631 632 0.250770 AAGCAAAGGGAGGAACCGTC 60.251 55.000 0.00 0.00 40.11 4.79
640 641 1.959226 GCGTCGTGAAGCAAAGGGA 60.959 57.895 2.86 0.00 35.86 4.20
688 689 1.490693 AACCGATGATGCGATGCGTC 61.491 55.000 4.09 4.09 44.02 5.19
698 700 2.094675 CTGGCTGGAAAAACCGATGAT 58.905 47.619 0.00 0.00 42.61 2.45
754 756 1.210722 CCAAGTAGCCCTCTTCCTTCC 59.789 57.143 0.00 0.00 0.00 3.46
758 760 3.082548 GTTTTCCAAGTAGCCCTCTTCC 58.917 50.000 0.00 0.00 0.00 3.46
760 762 3.498661 CCAGTTTTCCAAGTAGCCCTCTT 60.499 47.826 0.00 0.00 0.00 2.85
762 764 2.437413 CCAGTTTTCCAAGTAGCCCTC 58.563 52.381 0.00 0.00 0.00 4.30
763 765 1.075536 CCCAGTTTTCCAAGTAGCCCT 59.924 52.381 0.00 0.00 0.00 5.19
767 769 1.545841 GCCCCCAGTTTTCCAAGTAG 58.454 55.000 0.00 0.00 0.00 2.57
768 770 0.250989 CGCCCCCAGTTTTCCAAGTA 60.251 55.000 0.00 0.00 0.00 2.24
770 772 2.275380 CCGCCCCCAGTTTTCCAAG 61.275 63.158 0.00 0.00 0.00 3.61
771 773 2.203567 CCGCCCCCAGTTTTCCAA 60.204 61.111 0.00 0.00 0.00 3.53
772 774 4.986708 GCCGCCCCCAGTTTTCCA 62.987 66.667 0.00 0.00 0.00 3.53
807 809 1.314730 GCTTCCTCTCTCCTACCTCG 58.685 60.000 0.00 0.00 0.00 4.63
814 816 1.750778 CTGAGACTGCTTCCTCTCTCC 59.249 57.143 0.00 0.00 34.99 3.71
1021 1027 6.260271 CCGAATTTGAACCCTAGAAGGATAAC 59.740 42.308 0.00 0.00 37.67 1.89
1029 1039 1.406341 CGCCCGAATTTGAACCCTAGA 60.406 52.381 0.00 0.00 0.00 2.43
1170 1181 4.535526 ATTTACCAAAATCCCACAGTGC 57.464 40.909 0.00 0.00 28.88 4.40
1174 1185 7.453126 ACATCAAGTATTTACCAAAATCCCACA 59.547 33.333 0.00 0.00 36.67 4.17
1175 1186 7.836842 ACATCAAGTATTTACCAAAATCCCAC 58.163 34.615 0.00 0.00 36.67 4.61
1176 1187 9.184523 CTACATCAAGTATTTACCAAAATCCCA 57.815 33.333 0.00 0.00 36.67 4.37
1186 1217 7.920682 CCCCAAAATGCTACATCAAGTATTTAC 59.079 37.037 1.27 0.00 39.80 2.01
1195 1226 6.171921 CAAAAATCCCCAAAATGCTACATCA 58.828 36.000 0.00 0.00 0.00 3.07
1196 1227 5.065090 GCAAAAATCCCCAAAATGCTACATC 59.935 40.000 0.00 0.00 0.00 3.06
1197 1228 4.943093 GCAAAAATCCCCAAAATGCTACAT 59.057 37.500 0.00 0.00 0.00 2.29
1199 1230 4.154015 GTGCAAAAATCCCCAAAATGCTAC 59.846 41.667 0.00 0.00 33.66 3.58
1200 1231 4.041444 AGTGCAAAAATCCCCAAAATGCTA 59.959 37.500 0.00 0.00 33.66 3.49
1201 1232 3.148412 GTGCAAAAATCCCCAAAATGCT 58.852 40.909 0.00 0.00 33.66 3.79
1202 1233 3.148412 AGTGCAAAAATCCCCAAAATGC 58.852 40.909 0.00 0.00 0.00 3.56
1203 1234 5.179182 GTGTAGTGCAAAAATCCCCAAAATG 59.821 40.000 0.00 0.00 0.00 2.32
1207 1238 3.300388 TGTGTAGTGCAAAAATCCCCAA 58.700 40.909 0.00 0.00 0.00 4.12
1208 1239 2.950781 TGTGTAGTGCAAAAATCCCCA 58.049 42.857 0.00 0.00 0.00 4.96
1212 1288 6.473455 GCCTATTCATGTGTAGTGCAAAAATC 59.527 38.462 0.00 0.00 0.00 2.17
1222 1462 5.555017 AGCCTAATGCCTATTCATGTGTAG 58.445 41.667 0.00 0.00 42.71 2.74
1248 1488 4.779082 GCGAAACAATCACTATAGCACACG 60.779 45.833 0.00 0.00 0.00 4.49
1256 1496 2.024176 AGCCGCGAAACAATCACTAT 57.976 45.000 8.23 0.00 0.00 2.12
1260 1500 0.947960 TCAAAGCCGCGAAACAATCA 59.052 45.000 8.23 0.00 0.00 2.57
1274 1514 5.874810 TCGTTACAATCTCCAAGGATCAAAG 59.125 40.000 0.00 0.00 0.00 2.77
1283 1523 3.585862 GTCAGCTCGTTACAATCTCCAA 58.414 45.455 0.00 0.00 0.00 3.53
1480 1748 1.120530 ACGGCATCTTCCCTTACGAT 58.879 50.000 0.00 0.00 0.00 3.73
1638 1956 3.243636 CCATATGCCAGCACCAATTCTTC 60.244 47.826 0.00 0.00 0.00 2.87
1723 2042 8.755018 CACAGGTTTCAATTTGTTTTCATAGAC 58.245 33.333 0.00 0.00 0.00 2.59
1736 2055 4.037923 GGTCACACATCACAGGTTTCAATT 59.962 41.667 0.00 0.00 0.00 2.32
1813 2515 9.541143 TTTCGATCAACATTATAGTAGCATCAA 57.459 29.630 0.00 0.00 0.00 2.57
1831 2533 7.094592 TGCCACACAATTTAACTATTTCGATCA 60.095 33.333 0.00 0.00 0.00 2.92
1835 2537 7.026562 TCATGCCACACAATTTAACTATTTCG 58.973 34.615 0.00 0.00 0.00 3.46
1842 2544 7.985476 ACTAGTATCATGCCACACAATTTAAC 58.015 34.615 0.00 0.00 0.00 2.01
1852 2554 3.862642 GCCAGCTACTAGTATCATGCCAC 60.863 52.174 2.33 0.00 0.00 5.01
1920 2622 9.271828 GCAATTAAATGGAAAGAAGAAAAGGAA 57.728 29.630 0.00 0.00 0.00 3.36
1953 2658 6.428385 ACTCACTTTCTTGAAACTGAACAG 57.572 37.500 0.00 0.00 0.00 3.16
1954 2659 6.817765 AACTCACTTTCTTGAAACTGAACA 57.182 33.333 6.80 0.00 0.00 3.18
1973 2678 4.401519 GGGGATGCCCTAAACTTAAAACTC 59.598 45.833 16.52 0.00 44.66 3.01
1980 2685 1.847088 GAGAGGGGATGCCCTAAACTT 59.153 52.381 27.06 8.60 44.66 2.66
1988 2693 3.454812 TGTAAGTTTAGAGAGGGGATGCC 59.545 47.826 0.00 0.00 0.00 4.40
2072 2779 4.072131 TCCAAATACAGCAGAAAGTGGAC 58.928 43.478 0.00 0.00 0.00 4.02
2086 2796 6.072452 GGGCTAAATCTGTATGCTCCAAATAC 60.072 42.308 0.00 0.00 0.00 1.89
2125 2835 5.807520 AGAGTAATAATTAGCGCCATGATCG 59.192 40.000 2.29 0.00 0.00 3.69
2223 2933 9.832445 TTGACTTTCTTGAAACTGAACTATAGT 57.168 29.630 0.00 0.00 0.00 2.12
2321 3031 4.394920 TCACAACAAAGAAACAGGTCACTC 59.605 41.667 0.00 0.00 0.00 3.51
2322 3032 4.331968 TCACAACAAAGAAACAGGTCACT 58.668 39.130 0.00 0.00 0.00 3.41
2323 3033 4.695217 TCACAACAAAGAAACAGGTCAC 57.305 40.909 0.00 0.00 0.00 3.67
2333 3090 2.177394 TAGCGCCATCACAACAAAGA 57.823 45.000 2.29 0.00 0.00 2.52
2356 3113 4.811557 GCATAGGCGTTGAGAAAGAGTAAT 59.188 41.667 0.00 0.00 0.00 1.89
2483 3240 2.498078 TGTGGCCTGACGTTGTATCATA 59.502 45.455 3.32 0.00 0.00 2.15
2485 3242 0.682292 TGTGGCCTGACGTTGTATCA 59.318 50.000 3.32 0.00 0.00 2.15
2486 3243 1.076332 GTGTGGCCTGACGTTGTATC 58.924 55.000 3.32 0.00 0.00 2.24
2487 3244 0.685097 AGTGTGGCCTGACGTTGTAT 59.315 50.000 3.32 0.00 0.00 2.29
2488 3245 0.032952 GAGTGTGGCCTGACGTTGTA 59.967 55.000 3.32 0.00 0.00 2.41
2489 3246 1.227556 GAGTGTGGCCTGACGTTGT 60.228 57.895 3.32 0.00 0.00 3.32
2490 3247 1.224069 CTGAGTGTGGCCTGACGTTG 61.224 60.000 3.32 0.00 0.00 4.10
2491 3248 1.069765 CTGAGTGTGGCCTGACGTT 59.930 57.895 3.32 0.00 0.00 3.99
2492 3249 2.737180 CTGAGTGTGGCCTGACGT 59.263 61.111 3.32 0.00 0.00 4.34
2493 3250 2.047844 CCTGAGTGTGGCCTGACG 60.048 66.667 3.32 0.00 0.00 4.35
2494 3251 2.359230 GCCTGAGTGTGGCCTGAC 60.359 66.667 3.32 0.00 44.32 3.51
2500 3257 1.748122 GGAGCATGCCTGAGTGTGG 60.748 63.158 15.66 0.00 0.00 4.17
2501 3258 0.743701 GAGGAGCATGCCTGAGTGTG 60.744 60.000 15.66 0.00 38.73 3.82
2502 3259 1.196766 TGAGGAGCATGCCTGAGTGT 61.197 55.000 15.66 0.00 38.73 3.55
2503 3260 0.462225 CTGAGGAGCATGCCTGAGTG 60.462 60.000 15.66 0.00 38.73 3.51
2504 3261 1.624479 CCTGAGGAGCATGCCTGAGT 61.624 60.000 15.66 0.00 37.55 3.41
2505 3262 1.146485 CCTGAGGAGCATGCCTGAG 59.854 63.158 15.66 8.76 38.73 3.35
2506 3263 2.372890 CCCTGAGGAGCATGCCTGA 61.373 63.158 15.66 0.00 38.73 3.86
2507 3264 2.192443 CCCTGAGGAGCATGCCTG 59.808 66.667 15.66 2.78 38.73 4.85
2508 3265 1.927527 AACCCTGAGGAGCATGCCT 60.928 57.895 15.66 4.88 42.17 4.75
2509 3266 1.751927 CAACCCTGAGGAGCATGCC 60.752 63.158 15.66 5.80 36.73 4.40
2510 3267 2.413142 GCAACCCTGAGGAGCATGC 61.413 63.158 10.51 10.51 37.56 4.06
2511 3268 0.609957 TTGCAACCCTGAGGAGCATG 60.610 55.000 12.61 2.12 43.60 4.06
2512 3269 0.610232 GTTGCAACCCTGAGGAGCAT 60.610 55.000 19.15 0.00 43.60 3.79
2513 3270 1.228245 GTTGCAACCCTGAGGAGCA 60.228 57.895 19.15 4.42 42.88 4.26
2514 3271 1.973812 GGTTGCAACCCTGAGGAGC 60.974 63.158 34.36 9.03 43.43 4.70
2515 3272 4.404691 GGTTGCAACCCTGAGGAG 57.595 61.111 34.36 0.00 43.43 3.69
2524 3281 1.227527 GGGGCTGTTTGGTTGCAAC 60.228 57.895 21.59 21.59 0.00 4.17
2525 3282 0.980231 AAGGGGCTGTTTGGTTGCAA 60.980 50.000 0.00 0.00 0.00 4.08
2526 3283 0.105964 TAAGGGGCTGTTTGGTTGCA 60.106 50.000 0.00 0.00 0.00 4.08
2527 3284 0.603065 CTAAGGGGCTGTTTGGTTGC 59.397 55.000 0.00 0.00 0.00 4.17
2528 3285 1.995376 ACTAAGGGGCTGTTTGGTTG 58.005 50.000 0.00 0.00 0.00 3.77
2529 3286 2.091555 TCAACTAAGGGGCTGTTTGGTT 60.092 45.455 0.00 0.00 0.00 3.67
2530 3287 1.497286 TCAACTAAGGGGCTGTTTGGT 59.503 47.619 0.00 0.00 0.00 3.67
2531 3288 2.286365 TCAACTAAGGGGCTGTTTGG 57.714 50.000 0.00 0.00 0.00 3.28
2532 3289 4.331968 TGTATCAACTAAGGGGCTGTTTG 58.668 43.478 0.00 0.00 0.00 2.93
2533 3290 4.650972 TGTATCAACTAAGGGGCTGTTT 57.349 40.909 0.00 0.00 0.00 2.83
2534 3291 4.862641 ATGTATCAACTAAGGGGCTGTT 57.137 40.909 0.00 0.00 0.00 3.16
2535 3292 4.862641 AATGTATCAACTAAGGGGCTGT 57.137 40.909 0.00 0.00 0.00 4.40
2536 3293 5.182001 GCATAATGTATCAACTAAGGGGCTG 59.818 44.000 0.00 0.00 0.00 4.85
2537 3294 5.163099 TGCATAATGTATCAACTAAGGGGCT 60.163 40.000 0.00 0.00 0.00 5.19
2538 3295 5.070001 TGCATAATGTATCAACTAAGGGGC 58.930 41.667 0.00 0.00 0.00 5.80
2539 3296 5.182001 GCTGCATAATGTATCAACTAAGGGG 59.818 44.000 0.00 0.00 0.00 4.79
2540 3297 5.182001 GGCTGCATAATGTATCAACTAAGGG 59.818 44.000 0.50 0.00 0.00 3.95
2541 3298 5.764686 TGGCTGCATAATGTATCAACTAAGG 59.235 40.000 0.50 0.00 0.00 2.69
2542 3299 6.866010 TGGCTGCATAATGTATCAACTAAG 57.134 37.500 0.50 0.00 0.00 2.18
2543 3300 7.205737 CATGGCTGCATAATGTATCAACTAA 57.794 36.000 0.50 0.00 0.00 2.24
2544 3301 6.806388 CATGGCTGCATAATGTATCAACTA 57.194 37.500 0.50 0.00 0.00 2.24
2545 3302 5.700722 CATGGCTGCATAATGTATCAACT 57.299 39.130 0.50 0.00 0.00 3.16
2564 3321 4.261322 GCAATCACCATACCAGTAAGCATG 60.261 45.833 0.00 0.00 0.00 4.06
2566 3323 3.054434 AGCAATCACCATACCAGTAAGCA 60.054 43.478 0.00 0.00 0.00 3.91
2597 3354 6.314784 CGCAATACTTCCCTAAAAGTTCTTG 58.685 40.000 0.00 2.18 40.01 3.02
2634 3391 5.916883 CACTGAACACCTGCTTATCAAAAAG 59.083 40.000 0.00 0.00 0.00 2.27
2664 3421 3.102097 GCCTTGCGTGTCATAGGC 58.898 61.111 0.00 0.00 39.74 3.93
2675 3432 1.858458 GAAACAAGAAAACCGCCTTGC 59.142 47.619 0.00 0.00 42.46 4.01
2707 3464 3.757184 TGAATGTTGATTTGAATCCGCG 58.243 40.909 0.00 0.00 34.50 6.46
2720 3477 7.701924 ACATAAACTTGTGAGTGTTGAATGTTG 59.298 33.333 0.00 0.00 35.91 3.33
2728 3485 9.507329 AGATTGATACATAAACTTGTGAGTGTT 57.493 29.630 0.00 0.00 35.91 3.32
2934 3691 4.722700 ACCTGGGCATGTCCACGC 62.723 66.667 17.02 0.00 36.21 5.34
2938 3695 1.303317 AAACGACCTGGGCATGTCC 60.303 57.895 10.20 10.20 0.00 4.02
2952 3709 4.274406 CGGTTGTACTCTGACGCAAACG 62.274 54.545 0.00 0.00 43.77 3.60
2953 3710 1.191647 CGGTTGTACTCTGACGCAAAC 59.808 52.381 0.00 0.00 0.00 2.93
2959 3716 3.512680 CTTGATCCGGTTGTACTCTGAC 58.487 50.000 0.00 0.00 0.00 3.51
2963 3720 2.232941 TGTCCTTGATCCGGTTGTACTC 59.767 50.000 0.00 0.00 0.00 2.59
2975 3732 1.281287 ACTGCAGAGCATGTCCTTGAT 59.719 47.619 23.35 0.00 38.13 2.57
2985 3742 1.620323 ACATCAGTACACTGCAGAGCA 59.380 47.619 23.35 0.00 43.46 4.26
2986 3743 1.998315 CACATCAGTACACTGCAGAGC 59.002 52.381 23.35 7.08 43.46 4.09
2988 3745 1.620323 AGCACATCAGTACACTGCAGA 59.380 47.619 23.35 0.00 43.46 4.26
2990 3747 1.070601 ACAGCACATCAGTACACTGCA 59.929 47.619 4.43 0.00 43.46 4.41
2991 3748 1.800805 ACAGCACATCAGTACACTGC 58.199 50.000 4.43 0.00 43.46 4.40
2992 3749 4.179926 AGTACAGCACATCAGTACACTG 57.820 45.455 2.84 2.84 45.08 3.66
3127 3968 2.563179 GCAGGGATCGGTATGAGTACAT 59.437 50.000 0.00 0.00 40.16 2.29
3129 3970 1.272769 GGCAGGGATCGGTATGAGTAC 59.727 57.143 0.00 0.00 0.00 2.73
3171 4012 1.140852 CAATGAGGAAGGTGGCGGATA 59.859 52.381 0.00 0.00 0.00 2.59
3181 4022 4.269603 CGAATACAGACTGCAATGAGGAAG 59.730 45.833 1.25 0.00 0.00 3.46
3182 4023 4.183865 CGAATACAGACTGCAATGAGGAA 58.816 43.478 1.25 0.00 0.00 3.36
3183 4024 3.430790 CCGAATACAGACTGCAATGAGGA 60.431 47.826 1.25 0.00 0.00 3.71
3184 4025 2.868583 CCGAATACAGACTGCAATGAGG 59.131 50.000 1.25 0.99 0.00 3.86
3186 4027 3.261580 CACCGAATACAGACTGCAATGA 58.738 45.455 1.25 0.00 0.00 2.57
3188 4029 2.236146 TCCACCGAATACAGACTGCAAT 59.764 45.455 1.25 0.00 0.00 3.56
3190 4031 1.204704 CTCCACCGAATACAGACTGCA 59.795 52.381 1.25 0.00 0.00 4.41
3220 4063 3.127533 GCAGACCACCACATCGCC 61.128 66.667 0.00 0.00 0.00 5.54
3222 4065 0.320683 TCTTGCAGACCACCACATCG 60.321 55.000 0.00 0.00 0.00 3.84
3251 4094 0.902531 TAGGTTGTAGAGTGCCTGCC 59.097 55.000 0.00 0.00 32.90 4.85
3301 4145 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3302 4146 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3303 4147 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3305 4149 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3306 4150 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3307 4151 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3309 4153 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3310 4154 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3313 4157 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
3314 4158 8.394877 TGTGTCAAAAACGCTCTTATATTATGG 58.605 33.333 0.00 0.00 39.23 2.74
3318 4162 8.039603 TGATGTGTCAAAAACGCTCTTATATT 57.960 30.769 0.00 0.00 39.23 1.28
3319 4163 7.609760 TGATGTGTCAAAAACGCTCTTATAT 57.390 32.000 0.00 0.00 39.23 0.86
3320 4164 7.333174 TGATGATGTGTCAAAAACGCTCTTATA 59.667 33.333 0.00 0.00 39.23 0.98
3323 4167 4.275689 TGATGATGTGTCAAAAACGCTCTT 59.724 37.500 0.00 0.00 39.23 2.85
3324 4168 3.814842 TGATGATGTGTCAAAAACGCTCT 59.185 39.130 0.00 0.00 39.23 4.09
3325 4169 4.083855 TCTGATGATGTGTCAAAAACGCTC 60.084 41.667 0.00 0.00 39.23 5.03
3326 4170 3.814842 TCTGATGATGTGTCAAAAACGCT 59.185 39.130 0.00 0.00 39.23 5.07
3327 4171 4.145876 TCTGATGATGTGTCAAAAACGC 57.854 40.909 0.00 0.00 38.01 4.84
3328 4172 9.986833 TTATATTCTGATGATGTGTCAAAAACG 57.013 29.630 0.00 0.00 38.01 3.60
3331 4175 9.176460 TGCTTATATTCTGATGATGTGTCAAAA 57.824 29.630 0.00 0.00 38.01 2.44
3332 4176 8.615211 GTGCTTATATTCTGATGATGTGTCAAA 58.385 33.333 0.00 0.00 38.01 2.69
3333 4177 7.769970 TGTGCTTATATTCTGATGATGTGTCAA 59.230 33.333 0.00 0.00 38.01 3.18
3334 4178 7.274447 TGTGCTTATATTCTGATGATGTGTCA 58.726 34.615 0.00 0.00 39.04 3.58
3335 4179 7.719778 TGTGCTTATATTCTGATGATGTGTC 57.280 36.000 0.00 0.00 0.00 3.67
3336 4180 7.935210 TCATGTGCTTATATTCTGATGATGTGT 59.065 33.333 0.00 0.00 0.00 3.72
3337 4181 8.319143 TCATGTGCTTATATTCTGATGATGTG 57.681 34.615 0.00 0.00 0.00 3.21
3338 4182 8.155510 ACTCATGTGCTTATATTCTGATGATGT 58.844 33.333 0.00 0.00 0.00 3.06
3386 4230 4.763793 TGCTTTCTCTCCTTGATTCTTTGG 59.236 41.667 0.00 0.00 0.00 3.28
3417 4261 0.950555 CTCTGTTGCTGCGTGCCTTA 60.951 55.000 0.00 0.00 42.00 2.69
3422 4294 2.249535 AGTGCTCTGTTGCTGCGTG 61.250 57.895 0.00 0.00 0.00 5.34
3429 4301 3.313249 TGATTTGTGTCAGTGCTCTGTTG 59.687 43.478 15.01 0.00 41.91 3.33
3430 4302 3.544684 TGATTTGTGTCAGTGCTCTGTT 58.455 40.909 15.01 0.00 41.91 3.16
3440 4312 1.866601 CGTGACTGCTGATTTGTGTCA 59.133 47.619 0.00 0.00 35.62 3.58
3441 4313 1.195448 CCGTGACTGCTGATTTGTGTC 59.805 52.381 0.00 0.00 0.00 3.67
3442 4314 1.229428 CCGTGACTGCTGATTTGTGT 58.771 50.000 0.00 0.00 0.00 3.72
3443 4315 1.069703 CACCGTGACTGCTGATTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
3557 4433 7.559897 CCAATCCATCATCATCATCCATGAATA 59.440 37.037 0.00 0.00 45.06 1.75
3760 4636 1.109920 ACATGATCGACGAGGAGGGG 61.110 60.000 3.01 0.00 0.00 4.79
3966 4842 2.104132 CACACCGGCGATCATCGA 59.896 61.111 12.38 0.00 43.74 3.59
4036 4918 4.154347 GGGAGGACGAGCCAGCTG 62.154 72.222 6.78 6.78 40.02 4.24
4053 4935 1.746615 CCAGGTTCATCGTGCCAGG 60.747 63.158 0.00 0.00 0.00 4.45
4071 4953 5.241506 TGTTTCTGACACCATTCCTGATTTC 59.758 40.000 0.00 0.00 32.00 2.17
4076 4958 5.122869 CAGTATGTTTCTGACACCATTCCTG 59.877 44.000 0.00 0.00 42.04 3.86
4077 4959 5.013079 TCAGTATGTTTCTGACACCATTCCT 59.987 40.000 0.00 0.00 42.04 3.36
4104 4986 9.249457 CGTGCACTCTATGAATCTAAGATAAAA 57.751 33.333 16.19 0.00 0.00 1.52
4107 4989 6.207614 AGCGTGCACTCTATGAATCTAAGATA 59.792 38.462 16.19 0.00 0.00 1.98
4108 4990 5.010516 AGCGTGCACTCTATGAATCTAAGAT 59.989 40.000 16.19 0.00 0.00 2.40
4110 4992 4.443725 CAGCGTGCACTCTATGAATCTAAG 59.556 45.833 16.19 0.00 0.00 2.18
4111 4993 4.363138 CAGCGTGCACTCTATGAATCTAA 58.637 43.478 16.19 0.00 0.00 2.10
4112 4994 3.796844 GCAGCGTGCACTCTATGAATCTA 60.797 47.826 16.19 0.00 44.26 1.98
4113 4995 2.819115 CAGCGTGCACTCTATGAATCT 58.181 47.619 16.19 0.00 0.00 2.40
4114 4996 1.260033 GCAGCGTGCACTCTATGAATC 59.740 52.381 16.19 0.00 44.26 2.52
4115 4997 1.293924 GCAGCGTGCACTCTATGAAT 58.706 50.000 16.19 0.00 44.26 2.57
4117 4999 4.502263 GCAGCGTGCACTCTATGA 57.498 55.556 16.19 0.00 44.26 2.15
4154 5039 6.204882 TCTCTATGAGAAGATCGCAAATCGTA 59.795 38.462 0.00 0.00 35.59 3.43
4170 5055 7.094248 ATGAATCGGATCAGAACTCTCTATGAG 60.094 40.741 0.00 0.00 39.57 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.