Multiple sequence alignment - TraesCS5D01G515200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G515200 chr5D 100.000 3337 0 0 1 3337 538654490 538657826 0.000000e+00 6163.0
1 TraesCS5D01G515200 chr5D 90.152 924 63 14 993 1907 538621562 538622466 0.000000e+00 1177.0
2 TraesCS5D01G515200 chr5D 86.232 966 102 17 982 1926 538425254 538424299 0.000000e+00 1018.0
3 TraesCS5D01G515200 chr5D 83.817 1069 121 31 878 1926 538442373 538441337 0.000000e+00 968.0
4 TraesCS5D01G515200 chr5D 90.250 759 43 11 1981 2729 538622736 538623473 0.000000e+00 963.0
5 TraesCS5D01G515200 chr5D 86.952 866 89 10 990 1841 538417280 538416425 0.000000e+00 952.0
6 TraesCS5D01G515200 chr5D 90.828 447 33 4 1969 2412 538424031 538423590 2.870000e-165 592.0
7 TraesCS5D01G515200 chr5D 87.973 449 44 5 1966 2407 538441077 538440632 3.820000e-144 521.0
8 TraesCS5D01G515200 chr5D 84.841 409 35 9 2737 3135 538623589 538623980 1.450000e-103 387.0
9 TraesCS5D01G515200 chr5D 88.304 171 18 2 618 786 521867974 521868144 1.570000e-48 204.0
10 TraesCS5D01G515200 chr5D 90.789 152 11 2 628 776 536316511 536316662 2.030000e-47 200.0
11 TraesCS5D01G515200 chr5D 100.000 33 0 0 3187 3219 538657630 538657662 1.000000e-05 62.1
12 TraesCS5D01G515200 chr5D 100.000 33 0 0 3141 3173 538657676 538657708 1.000000e-05 62.1
13 TraesCS5D01G515200 chr4A 91.638 1758 79 27 997 2729 630899229 630897515 0.000000e+00 2370.0
14 TraesCS5D01G515200 chr4A 92.451 1073 59 8 1936 2998 631501566 631502626 0.000000e+00 1513.0
15 TraesCS5D01G515200 chr4A 93.129 815 37 10 1936 2735 630876964 630876154 0.000000e+00 1177.0
16 TraesCS5D01G515200 chr4A 84.754 1056 126 20 884 1926 631475868 631476901 0.000000e+00 1026.0
17 TraesCS5D01G515200 chr4A 84.283 948 107 21 990 1922 631494237 631495157 0.000000e+00 887.0
18 TraesCS5D01G515200 chr4A 89.407 708 47 11 800 1487 630878296 630877597 0.000000e+00 867.0
19 TraesCS5D01G515200 chr4A 91.959 485 33 3 2738 3216 630876040 630875556 0.000000e+00 675.0
20 TraesCS5D01G515200 chr4A 91.892 444 33 3 178 621 630879205 630878765 4.730000e-173 617.0
21 TraesCS5D01G515200 chr4A 85.664 572 55 15 1959 2527 631495431 631495978 8.030000e-161 577.0
22 TraesCS5D01G515200 chr4A 90.155 386 26 5 1548 1926 630877577 630877197 2.990000e-135 492.0
23 TraesCS5D01G515200 chr4A 93.141 277 14 3 3046 3320 631502619 631502892 5.190000e-108 401.0
24 TraesCS5D01G515200 chr4A 82.310 407 41 8 2738 3135 630897399 630897015 1.150000e-84 324.0
25 TraesCS5D01G515200 chr4A 87.654 162 20 0 465 626 438615348 438615509 4.400000e-44 189.0
26 TraesCS5D01G515200 chr4A 97.436 39 1 0 3187 3225 630875633 630875595 2.150000e-07 67.6
27 TraesCS5D01G515200 chr5B 86.747 1162 84 25 792 1926 679672009 679673127 0.000000e+00 1229.0
28 TraesCS5D01G515200 chr5B 85.851 1046 109 19 884 1921 679559938 679558924 0.000000e+00 1075.0
29 TraesCS5D01G515200 chr5B 90.606 809 56 8 1936 2735 679673361 679674158 0.000000e+00 1055.0
30 TraesCS5D01G515200 chr5B 85.062 964 106 23 993 1926 679405328 679404373 0.000000e+00 948.0
31 TraesCS5D01G515200 chr5B 92.395 618 32 7 2733 3337 679674265 679674880 0.000000e+00 867.0
32 TraesCS5D01G515200 chr5B 83.885 453 39 15 178 626 679671576 679671998 5.190000e-108 401.0
33 TraesCS5D01G515200 chr5B 77.635 389 57 17 2782 3146 679401876 679401494 3.370000e-50 209.0
34 TraesCS5D01G515200 chr5B 89.076 119 11 2 348 466 230882617 230882501 2.680000e-31 147.0
35 TraesCS5D01G515200 chr5B 100.000 33 0 0 3141 3173 679674732 679674764 1.000000e-05 62.1
36 TraesCS5D01G515200 chrUn 89.968 947 75 10 993 1924 67363397 67362456 0.000000e+00 1205.0
37 TraesCS5D01G515200 chrUn 88.930 813 66 9 1936 2729 67362249 67361442 0.000000e+00 981.0
38 TraesCS5D01G515200 chrUn 83.659 410 37 12 2737 3135 67361326 67360936 3.170000e-95 359.0
39 TraesCS5D01G515200 chrUn 87.898 157 19 0 465 621 96302150 96301994 5.690000e-43 185.0
40 TraesCS5D01G515200 chr1D 90.511 411 28 7 2013 2412 6386259 6385849 1.760000e-147 532.0
41 TraesCS5D01G515200 chr3D 97.175 177 5 0 1 177 318786126 318785950 1.950000e-77 300.0
42 TraesCS5D01G515200 chr3D 96.429 168 6 0 1 168 318790686 318790519 9.120000e-71 278.0
43 TraesCS5D01G515200 chr3D 89.744 156 14 2 623 776 533955511 533955666 7.300000e-47 198.0
44 TraesCS5D01G515200 chr2D 93.506 154 7 2 626 776 606188939 606188786 3.350000e-55 226.0
45 TraesCS5D01G515200 chr2D 90.728 151 14 0 626 776 423348520 423348370 5.650000e-48 202.0
46 TraesCS5D01G515200 chr2D 90.789 152 12 2 627 776 537187911 537187760 5.650000e-48 202.0
47 TraesCS5D01G515200 chr2D 89.744 156 12 4 625 776 540163587 540163742 2.630000e-46 196.0
48 TraesCS5D01G515200 chr6B 90.123 162 16 0 465 626 288654709 288654870 9.380000e-51 211.0
49 TraesCS5D01G515200 chr2A 88.889 162 16 1 625 784 19616573 19616734 7.300000e-47 198.0
50 TraesCS5D01G515200 chr7D 88.272 162 19 0 465 626 128915490 128915329 9.450000e-46 195.0
51 TraesCS5D01G515200 chr7B 87.425 167 17 4 613 776 606591071 606591236 4.400000e-44 189.0
52 TraesCS5D01G515200 chr7A 87.654 162 20 0 465 626 128829438 128829277 4.400000e-44 189.0
53 TraesCS5D01G515200 chr7A 87.654 162 20 0 465 626 418669583 418669422 4.400000e-44 189.0
54 TraesCS5D01G515200 chr2B 87.037 162 20 1 465 626 550406558 550406398 7.350000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G515200 chr5D 538654490 538657826 3336 False 2095.733333 6163 100.000000 1 3337 3 chr5D.!!$F4 3336
1 TraesCS5D01G515200 chr5D 538416425 538417280 855 True 952.000000 952 86.952000 990 1841 1 chr5D.!!$R1 851
2 TraesCS5D01G515200 chr5D 538621562 538623980 2418 False 842.333333 1177 88.414333 993 3135 3 chr5D.!!$F3 2142
3 TraesCS5D01G515200 chr5D 538423590 538425254 1664 True 805.000000 1018 88.530000 982 2412 2 chr5D.!!$R2 1430
4 TraesCS5D01G515200 chr5D 538440632 538442373 1741 True 744.500000 968 85.895000 878 2407 2 chr5D.!!$R3 1529
5 TraesCS5D01G515200 chr4A 630897015 630899229 2214 True 1347.000000 2370 86.974000 997 3135 2 chr4A.!!$R2 2138
6 TraesCS5D01G515200 chr4A 631475868 631476901 1033 False 1026.000000 1026 84.754000 884 1926 1 chr4A.!!$F2 1042
7 TraesCS5D01G515200 chr4A 631501566 631502892 1326 False 957.000000 1513 92.796000 1936 3320 2 chr4A.!!$F4 1384
8 TraesCS5D01G515200 chr4A 631494237 631495978 1741 False 732.000000 887 84.973500 990 2527 2 chr4A.!!$F3 1537
9 TraesCS5D01G515200 chr4A 630875556 630879205 3649 True 649.266667 1177 92.329667 178 3225 6 chr4A.!!$R1 3047
10 TraesCS5D01G515200 chr5B 679558924 679559938 1014 True 1075.000000 1075 85.851000 884 1921 1 chr5B.!!$R2 1037
11 TraesCS5D01G515200 chr5B 679671576 679674880 3304 False 722.820000 1229 90.726600 178 3337 5 chr5B.!!$F1 3159
12 TraesCS5D01G515200 chr5B 679401494 679405328 3834 True 578.500000 948 81.348500 993 3146 2 chr5B.!!$R3 2153
13 TraesCS5D01G515200 chrUn 67360936 67363397 2461 True 848.333333 1205 87.519000 993 3135 3 chrUn.!!$R2 2142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.031716 ACCTGAGCCTATCTGAGCCA 60.032 55.0 0.00 0.0 0.00 4.75 F
359 365 0.033366 ACACACGTCACTATGCAGCA 59.967 50.0 0.00 0.0 0.00 4.41 F
877 1188 0.396001 AAGAGACGAGTCTAGGCCCC 60.396 60.0 5.65 0.0 40.61 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 1677 0.108329 CCTCGACGTATTTGGGCTGT 60.108 55.000 0.00 0.0 0.00 4.40 R
1318 1686 2.827190 TCTGCGCCCTCGACGTAT 60.827 61.111 4.18 0.0 38.10 3.06 R
2736 3846 1.079127 CTTTGCGAGGACCATCGGT 60.079 57.895 13.06 0.0 42.94 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.371975 CGGAGGAGGTTTTCGCAA 57.628 55.556 0.00 0.00 0.00 4.85
20 21 2.624169 CGGAGGAGGTTTTCGCAAA 58.376 52.632 0.00 0.00 0.00 3.68
21 22 0.948678 CGGAGGAGGTTTTCGCAAAA 59.051 50.000 0.00 0.00 0.00 2.44
22 23 1.069227 CGGAGGAGGTTTTCGCAAAAG 60.069 52.381 0.00 0.00 0.00 2.27
23 24 1.954382 GGAGGAGGTTTTCGCAAAAGT 59.046 47.619 0.00 0.00 0.00 2.66
24 25 2.287608 GGAGGAGGTTTTCGCAAAAGTG 60.288 50.000 0.00 0.00 0.00 3.16
25 26 2.357952 GAGGAGGTTTTCGCAAAAGTGT 59.642 45.455 0.00 0.00 0.00 3.55
26 27 2.099098 AGGAGGTTTTCGCAAAAGTGTG 59.901 45.455 0.00 0.00 36.54 3.82
27 28 2.159296 GGAGGTTTTCGCAAAAGTGTGT 60.159 45.455 0.00 0.00 36.58 3.72
28 29 3.105937 GAGGTTTTCGCAAAAGTGTGTC 58.894 45.455 0.00 0.00 36.58 3.67
29 30 2.752903 AGGTTTTCGCAAAAGTGTGTCT 59.247 40.909 0.00 0.00 36.58 3.41
30 31 3.192633 AGGTTTTCGCAAAAGTGTGTCTT 59.807 39.130 0.00 0.00 36.58 3.01
31 32 3.303229 GGTTTTCGCAAAAGTGTGTCTTG 59.697 43.478 0.00 0.00 36.40 3.02
32 33 3.840890 TTTCGCAAAAGTGTGTCTTGT 57.159 38.095 0.00 0.00 36.40 3.16
33 34 3.840890 TTCGCAAAAGTGTGTCTTGTT 57.159 38.095 0.00 0.00 36.40 2.83
34 35 3.398954 TCGCAAAAGTGTGTCTTGTTC 57.601 42.857 0.00 0.00 36.40 3.18
35 36 2.744741 TCGCAAAAGTGTGTCTTGTTCA 59.255 40.909 0.00 0.00 36.40 3.18
36 37 3.189495 TCGCAAAAGTGTGTCTTGTTCAA 59.811 39.130 0.00 0.00 36.40 2.69
37 38 3.543494 CGCAAAAGTGTGTCTTGTTCAAG 59.457 43.478 6.24 6.24 36.40 3.02
38 39 3.859386 GCAAAAGTGTGTCTTGTTCAAGG 59.141 43.478 11.82 0.00 36.40 3.61
39 40 4.380444 GCAAAAGTGTGTCTTGTTCAAGGA 60.380 41.667 11.82 0.00 36.40 3.36
40 41 5.679638 GCAAAAGTGTGTCTTGTTCAAGGAT 60.680 40.000 11.82 0.00 36.40 3.24
41 42 5.505173 AAAGTGTGTCTTGTTCAAGGATG 57.495 39.130 11.82 0.00 36.40 3.51
42 43 4.156455 AGTGTGTCTTGTTCAAGGATGT 57.844 40.909 11.82 0.00 0.00 3.06
43 44 5.290493 AGTGTGTCTTGTTCAAGGATGTA 57.710 39.130 11.82 0.00 0.00 2.29
44 45 5.680619 AGTGTGTCTTGTTCAAGGATGTAA 58.319 37.500 11.82 0.00 0.00 2.41
45 46 6.119536 AGTGTGTCTTGTTCAAGGATGTAAA 58.880 36.000 11.82 0.00 0.00 2.01
46 47 6.772716 AGTGTGTCTTGTTCAAGGATGTAAAT 59.227 34.615 11.82 0.00 0.00 1.40
47 48 6.857964 GTGTGTCTTGTTCAAGGATGTAAATG 59.142 38.462 11.82 0.00 0.00 2.32
48 49 5.858581 GTGTCTTGTTCAAGGATGTAAATGC 59.141 40.000 11.82 0.00 0.00 3.56
49 50 5.534278 TGTCTTGTTCAAGGATGTAAATGCA 59.466 36.000 11.82 0.00 0.00 3.96
50 51 6.040278 TGTCTTGTTCAAGGATGTAAATGCAA 59.960 34.615 11.82 0.00 0.00 4.08
51 52 6.922957 GTCTTGTTCAAGGATGTAAATGCAAA 59.077 34.615 11.82 0.00 0.00 3.68
52 53 7.437862 GTCTTGTTCAAGGATGTAAATGCAAAA 59.562 33.333 11.82 0.00 0.00 2.44
53 54 8.149647 TCTTGTTCAAGGATGTAAATGCAAAAT 58.850 29.630 11.82 0.00 0.00 1.82
54 55 7.655236 TGTTCAAGGATGTAAATGCAAAATG 57.345 32.000 0.00 0.00 0.00 2.32
55 56 7.215789 TGTTCAAGGATGTAAATGCAAAATGT 58.784 30.769 0.00 0.00 0.00 2.71
56 57 8.363390 TGTTCAAGGATGTAAATGCAAAATGTA 58.637 29.630 0.00 0.00 0.00 2.29
57 58 8.647226 GTTCAAGGATGTAAATGCAAAATGTAC 58.353 33.333 0.00 0.00 0.00 2.90
58 59 7.319646 TCAAGGATGTAAATGCAAAATGTACC 58.680 34.615 0.00 0.00 0.00 3.34
59 60 6.849085 AGGATGTAAATGCAAAATGTACCA 57.151 33.333 0.00 0.00 0.00 3.25
60 61 6.630071 AGGATGTAAATGCAAAATGTACCAC 58.370 36.000 0.00 0.00 0.00 4.16
61 62 5.514914 GGATGTAAATGCAAAATGTACCACG 59.485 40.000 0.00 0.00 0.00 4.94
62 63 5.690997 TGTAAATGCAAAATGTACCACGA 57.309 34.783 0.00 0.00 0.00 4.35
63 64 6.073327 TGTAAATGCAAAATGTACCACGAA 57.927 33.333 0.00 0.00 0.00 3.85
64 65 6.504398 TGTAAATGCAAAATGTACCACGAAA 58.496 32.000 0.00 0.00 0.00 3.46
65 66 6.638873 TGTAAATGCAAAATGTACCACGAAAG 59.361 34.615 0.00 0.00 0.00 2.62
67 68 4.640789 TGCAAAATGTACCACGAAAGTT 57.359 36.364 0.00 0.00 46.40 2.66
68 69 4.602995 TGCAAAATGTACCACGAAAGTTC 58.397 39.130 0.00 0.00 46.40 3.01
69 70 4.336993 TGCAAAATGTACCACGAAAGTTCT 59.663 37.500 0.00 0.00 46.40 3.01
70 71 4.675114 GCAAAATGTACCACGAAAGTTCTG 59.325 41.667 0.00 0.00 46.40 3.02
71 72 4.483476 AAATGTACCACGAAAGTTCTGC 57.517 40.909 0.00 0.00 46.40 4.26
72 73 2.605837 TGTACCACGAAAGTTCTGCA 57.394 45.000 0.00 0.00 46.40 4.41
73 74 2.907634 TGTACCACGAAAGTTCTGCAA 58.092 42.857 0.00 0.00 46.40 4.08
74 75 3.271729 TGTACCACGAAAGTTCTGCAAA 58.728 40.909 0.00 0.00 46.40 3.68
75 76 3.880490 TGTACCACGAAAGTTCTGCAAAT 59.120 39.130 0.00 0.00 46.40 2.32
76 77 3.626028 ACCACGAAAGTTCTGCAAATC 57.374 42.857 0.00 0.00 46.40 2.17
77 78 2.293399 ACCACGAAAGTTCTGCAAATCC 59.707 45.455 0.00 0.00 46.40 3.01
78 79 2.351738 CCACGAAAGTTCTGCAAATCCC 60.352 50.000 0.00 0.00 46.40 3.85
79 80 2.293122 CACGAAAGTTCTGCAAATCCCA 59.707 45.455 0.00 0.00 46.40 4.37
80 81 2.293399 ACGAAAGTTCTGCAAATCCCAC 59.707 45.455 0.00 0.00 46.40 4.61
81 82 2.351738 CGAAAGTTCTGCAAATCCCACC 60.352 50.000 0.00 0.00 0.00 4.61
82 83 2.683211 AAGTTCTGCAAATCCCACCT 57.317 45.000 0.00 0.00 0.00 4.00
83 84 1.915141 AGTTCTGCAAATCCCACCTG 58.085 50.000 0.00 0.00 0.00 4.00
84 85 1.425066 AGTTCTGCAAATCCCACCTGA 59.575 47.619 0.00 0.00 0.00 3.86
85 86 1.815003 GTTCTGCAAATCCCACCTGAG 59.185 52.381 0.00 0.00 0.00 3.35
86 87 0.322816 TCTGCAAATCCCACCTGAGC 60.323 55.000 0.00 0.00 0.00 4.26
87 88 1.304381 TGCAAATCCCACCTGAGCC 60.304 57.895 0.00 0.00 0.00 4.70
88 89 1.000396 GCAAATCCCACCTGAGCCT 60.000 57.895 0.00 0.00 0.00 4.58
89 90 0.255890 GCAAATCCCACCTGAGCCTA 59.744 55.000 0.00 0.00 0.00 3.93
90 91 1.133668 GCAAATCCCACCTGAGCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
91 92 2.856222 CAAATCCCACCTGAGCCTATC 58.144 52.381 0.00 0.00 0.00 2.08
92 93 2.441001 CAAATCCCACCTGAGCCTATCT 59.559 50.000 0.00 0.00 0.00 1.98
93 94 1.727062 ATCCCACCTGAGCCTATCTG 58.273 55.000 0.00 0.00 0.00 2.90
94 95 0.636647 TCCCACCTGAGCCTATCTGA 59.363 55.000 0.00 0.00 0.00 3.27
95 96 1.047002 CCCACCTGAGCCTATCTGAG 58.953 60.000 0.00 0.00 0.00 3.35
96 97 0.392336 CCACCTGAGCCTATCTGAGC 59.608 60.000 0.00 0.00 0.00 4.26
97 98 0.392336 CACCTGAGCCTATCTGAGCC 59.608 60.000 0.00 0.00 0.00 4.70
98 99 0.031716 ACCTGAGCCTATCTGAGCCA 60.032 55.000 0.00 0.00 0.00 4.75
99 100 0.392336 CCTGAGCCTATCTGAGCCAC 59.608 60.000 0.00 0.00 0.00 5.01
100 101 1.412079 CTGAGCCTATCTGAGCCACT 58.588 55.000 0.00 0.00 0.00 4.00
101 102 1.340889 CTGAGCCTATCTGAGCCACTC 59.659 57.143 0.00 0.00 0.00 3.51
102 103 1.342374 TGAGCCTATCTGAGCCACTCA 60.342 52.381 0.00 0.00 38.25 3.41
103 104 1.969923 GAGCCTATCTGAGCCACTCAT 59.030 52.381 0.00 0.00 39.92 2.90
104 105 2.368221 GAGCCTATCTGAGCCACTCATT 59.632 50.000 0.00 0.00 39.92 2.57
105 106 3.576118 GAGCCTATCTGAGCCACTCATTA 59.424 47.826 0.00 0.00 39.92 1.90
106 107 3.323403 AGCCTATCTGAGCCACTCATTAC 59.677 47.826 0.00 0.00 39.92 1.89
107 108 3.070159 GCCTATCTGAGCCACTCATTACA 59.930 47.826 0.00 0.00 39.92 2.41
108 109 4.626042 CCTATCTGAGCCACTCATTACAC 58.374 47.826 0.00 0.00 39.92 2.90
109 110 4.100035 CCTATCTGAGCCACTCATTACACA 59.900 45.833 0.00 0.00 39.92 3.72
110 111 4.767578 ATCTGAGCCACTCATTACACAT 57.232 40.909 0.00 0.00 39.92 3.21
111 112 4.128925 TCTGAGCCACTCATTACACATC 57.871 45.455 0.00 0.00 39.92 3.06
112 113 3.118629 TCTGAGCCACTCATTACACATCC 60.119 47.826 0.00 0.00 39.92 3.51
113 114 2.571202 TGAGCCACTCATTACACATCCA 59.429 45.455 0.00 0.00 35.39 3.41
114 115 3.008923 TGAGCCACTCATTACACATCCAA 59.991 43.478 0.00 0.00 35.39 3.53
115 116 4.009675 GAGCCACTCATTACACATCCAAA 58.990 43.478 0.00 0.00 0.00 3.28
116 117 4.012374 AGCCACTCATTACACATCCAAAG 58.988 43.478 0.00 0.00 0.00 2.77
117 118 3.129287 GCCACTCATTACACATCCAAAGG 59.871 47.826 0.00 0.00 0.00 3.11
118 119 3.129287 CCACTCATTACACATCCAAAGGC 59.871 47.826 0.00 0.00 0.00 4.35
119 120 3.129287 CACTCATTACACATCCAAAGGCC 59.871 47.826 0.00 0.00 0.00 5.19
120 121 2.689983 CTCATTACACATCCAAAGGCCC 59.310 50.000 0.00 0.00 0.00 5.80
121 122 2.042297 TCATTACACATCCAAAGGCCCA 59.958 45.455 0.00 0.00 0.00 5.36
122 123 1.917872 TTACACATCCAAAGGCCCAC 58.082 50.000 0.00 0.00 0.00 4.61
123 124 0.774276 TACACATCCAAAGGCCCACA 59.226 50.000 0.00 0.00 0.00 4.17
124 125 0.540365 ACACATCCAAAGGCCCACAG 60.540 55.000 0.00 0.00 0.00 3.66
125 126 0.540365 CACATCCAAAGGCCCACAGT 60.540 55.000 0.00 0.00 0.00 3.55
126 127 0.540365 ACATCCAAAGGCCCACAGTG 60.540 55.000 0.00 0.00 0.00 3.66
127 128 1.077265 ATCCAAAGGCCCACAGTGG 59.923 57.895 13.35 13.35 37.25 4.00
135 136 2.665000 CCCACAGTGGCAGATCGT 59.335 61.111 14.98 0.00 35.79 3.73
136 137 1.897423 CCCACAGTGGCAGATCGTA 59.103 57.895 14.98 0.00 35.79 3.43
137 138 0.465705 CCCACAGTGGCAGATCGTAT 59.534 55.000 14.98 0.00 35.79 3.06
138 139 1.575244 CCACAGTGGCAGATCGTATG 58.425 55.000 6.67 0.00 0.00 2.39
139 140 1.136891 CCACAGTGGCAGATCGTATGA 59.863 52.381 6.67 0.00 0.00 2.15
140 141 2.224137 CCACAGTGGCAGATCGTATGAT 60.224 50.000 6.67 0.00 37.60 2.45
150 151 3.554259 GATCGTATGATCGCACCTACA 57.446 47.619 9.15 0.00 41.51 2.74
151 152 3.897325 GATCGTATGATCGCACCTACAA 58.103 45.455 9.15 0.00 41.51 2.41
152 153 3.074504 TCGTATGATCGCACCTACAAC 57.925 47.619 0.00 0.00 0.00 3.32
153 154 2.124903 CGTATGATCGCACCTACAACC 58.875 52.381 0.00 0.00 0.00 3.77
154 155 2.480845 GTATGATCGCACCTACAACCC 58.519 52.381 0.00 0.00 0.00 4.11
155 156 0.908910 ATGATCGCACCTACAACCCA 59.091 50.000 0.00 0.00 0.00 4.51
156 157 0.249120 TGATCGCACCTACAACCCAG 59.751 55.000 0.00 0.00 0.00 4.45
157 158 0.535335 GATCGCACCTACAACCCAGA 59.465 55.000 0.00 0.00 0.00 3.86
158 159 1.139058 GATCGCACCTACAACCCAGAT 59.861 52.381 0.00 0.00 0.00 2.90
159 160 0.535335 TCGCACCTACAACCCAGATC 59.465 55.000 0.00 0.00 0.00 2.75
160 161 0.462047 CGCACCTACAACCCAGATCC 60.462 60.000 0.00 0.00 0.00 3.36
161 162 0.912486 GCACCTACAACCCAGATCCT 59.088 55.000 0.00 0.00 0.00 3.24
162 163 1.407437 GCACCTACAACCCAGATCCTG 60.407 57.143 0.00 0.00 0.00 3.86
163 164 1.909302 CACCTACAACCCAGATCCTGT 59.091 52.381 0.00 0.00 0.00 4.00
164 165 3.104512 CACCTACAACCCAGATCCTGTA 58.895 50.000 0.00 0.00 0.00 2.74
165 166 3.105283 ACCTACAACCCAGATCCTGTAC 58.895 50.000 0.00 0.00 0.00 2.90
166 167 3.246021 ACCTACAACCCAGATCCTGTACT 60.246 47.826 0.00 0.00 0.00 2.73
167 168 4.016851 ACCTACAACCCAGATCCTGTACTA 60.017 45.833 0.00 0.00 0.00 1.82
168 169 4.585162 CCTACAACCCAGATCCTGTACTAG 59.415 50.000 0.00 0.00 0.00 2.57
169 170 4.062490 ACAACCCAGATCCTGTACTAGT 57.938 45.455 0.00 0.00 0.00 2.57
170 171 4.426704 ACAACCCAGATCCTGTACTAGTT 58.573 43.478 0.00 0.00 0.00 2.24
171 172 4.223032 ACAACCCAGATCCTGTACTAGTTG 59.777 45.833 0.00 0.00 36.52 3.16
172 173 2.766828 ACCCAGATCCTGTACTAGTTGC 59.233 50.000 0.00 0.00 0.00 4.17
173 174 2.103263 CCCAGATCCTGTACTAGTTGCC 59.897 54.545 0.00 0.00 0.00 4.52
174 175 2.103263 CCAGATCCTGTACTAGTTGCCC 59.897 54.545 0.00 0.00 0.00 5.36
175 176 2.103263 CAGATCCTGTACTAGTTGCCCC 59.897 54.545 0.00 0.00 0.00 5.80
176 177 1.416772 GATCCTGTACTAGTTGCCCCC 59.583 57.143 0.00 0.00 0.00 5.40
224 225 3.497115 TGCCCACAGTCCAGCCAA 61.497 61.111 0.00 0.00 0.00 4.52
268 270 1.026584 CCATTGCGCAGATTGGATGA 58.973 50.000 24.00 2.81 0.00 2.92
272 274 0.748729 TGCGCAGATTGGATGATGCA 60.749 50.000 5.66 0.00 38.60 3.96
280 282 0.251121 TTGGATGATGCACAACCCGT 60.251 50.000 11.22 0.00 40.16 5.28
299 301 4.217550 CCCGTTAAAAGAAGGCTTCATTGA 59.782 41.667 27.70 13.76 31.82 2.57
300 302 5.278758 CCCGTTAAAAGAAGGCTTCATTGAA 60.279 40.000 27.70 18.72 31.82 2.69
305 307 3.949842 AGAAGGCTTCATTGAAAAGGC 57.050 42.857 27.70 2.37 46.52 4.35
357 363 1.783284 ACACACACGTCACTATGCAG 58.217 50.000 0.00 0.00 0.00 4.41
359 365 0.033366 ACACACGTCACTATGCAGCA 59.967 50.000 0.00 0.00 0.00 4.41
367 373 3.865164 CGTCACTATGCAGCAGATTGTTA 59.135 43.478 7.20 0.00 0.00 2.41
370 376 5.295292 GTCACTATGCAGCAGATTGTTACAT 59.705 40.000 7.20 0.00 0.00 2.29
386 392 4.161377 TGTTACATGATCCAGTCGATCCAA 59.839 41.667 0.00 0.00 46.06 3.53
451 457 2.702751 ATCGTCCAACGGTCGTGCAA 62.703 55.000 0.00 0.00 42.81 4.08
477 483 1.705256 TCGTCGTGGACTAAACATGC 58.295 50.000 0.00 0.00 0.00 4.06
500 506 7.089538 TGCATAAATGGCATTATCGTATTTGG 58.910 34.615 14.05 0.00 36.11 3.28
510 516 9.040939 GGCATTATCGTATTTGGCTTTTAAAAT 57.959 29.630 0.09 0.00 0.00 1.82
622 628 8.450578 AAGTCAATCGATGCCTTATATTTTGA 57.549 30.769 0.00 0.00 0.00 2.69
626 632 8.559536 TCAATCGATGCCTTATATTTTGAGAAC 58.440 33.333 0.00 0.00 0.00 3.01
627 633 8.344831 CAATCGATGCCTTATATTTTGAGAACA 58.655 33.333 0.00 0.00 0.00 3.18
628 634 7.482654 TCGATGCCTTATATTTTGAGAACAG 57.517 36.000 0.00 0.00 0.00 3.16
629 635 7.047891 TCGATGCCTTATATTTTGAGAACAGT 58.952 34.615 0.00 0.00 0.00 3.55
630 636 7.552687 TCGATGCCTTATATTTTGAGAACAGTT 59.447 33.333 0.00 0.00 0.00 3.16
632 638 9.294030 GATGCCTTATATTTTGAGAACAGTTTG 57.706 33.333 0.00 0.00 0.00 2.93
634 640 8.296713 TGCCTTATATTTTGAGAACAGTTTGAC 58.703 33.333 0.00 0.00 0.00 3.18
635 641 8.515414 GCCTTATATTTTGAGAACAGTTTGACT 58.485 33.333 0.00 0.00 0.00 3.41
679 847 8.561738 TTTTAAGGATGTCACATCTAAACTCC 57.438 34.615 17.46 0.18 0.00 3.85
680 848 4.762289 AGGATGTCACATCTAAACTCCC 57.238 45.455 17.46 0.00 0.00 4.30
681 849 4.104086 AGGATGTCACATCTAAACTCCCA 58.896 43.478 17.46 0.00 0.00 4.37
683 851 4.323485 GGATGTCACATCTAAACTCCCACA 60.323 45.833 17.46 0.00 0.00 4.17
686 854 5.630121 TGTCACATCTAAACTCCCACAAAT 58.370 37.500 0.00 0.00 0.00 2.32
687 855 6.774673 TGTCACATCTAAACTCCCACAAATA 58.225 36.000 0.00 0.00 0.00 1.40
688 856 7.402054 TGTCACATCTAAACTCCCACAAATAT 58.598 34.615 0.00 0.00 0.00 1.28
689 857 8.544622 TGTCACATCTAAACTCCCACAAATATA 58.455 33.333 0.00 0.00 0.00 0.86
690 858 9.561069 GTCACATCTAAACTCCCACAAATATAT 57.439 33.333 0.00 0.00 0.00 0.86
698 866 6.824305 ACTCCCACAAATATATAATGCAGC 57.176 37.500 0.00 0.00 0.00 5.25
699 867 6.306199 ACTCCCACAAATATATAATGCAGCA 58.694 36.000 0.00 0.00 0.00 4.41
700 868 6.777091 ACTCCCACAAATATATAATGCAGCAA 59.223 34.615 0.00 0.00 0.00 3.91
702 870 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
703 871 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
704 872 7.383029 CCCACAAATATATAATGCAGCAACAAG 59.617 37.037 0.00 0.00 0.00 3.16
705 873 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
706 874 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
742 910 9.796120 CTAGAACAAAAATAAACCACAAACTGA 57.204 29.630 0.00 0.00 0.00 3.41
744 912 9.665719 AGAACAAAAATAAACCACAAACTGAAT 57.334 25.926 0.00 0.00 0.00 2.57
745 913 9.701355 GAACAAAAATAAACCACAAACTGAATG 57.299 29.630 0.00 0.00 0.00 2.67
746 914 8.207521 ACAAAAATAAACCACAAACTGAATGG 57.792 30.769 0.00 0.00 39.57 3.16
747 915 8.043710 ACAAAAATAAACCACAAACTGAATGGA 58.956 29.630 0.00 0.00 36.94 3.41
749 917 6.723298 AATAAACCACAAACTGAATGGACA 57.277 33.333 0.00 0.00 36.94 4.02
750 918 6.723298 ATAAACCACAAACTGAATGGACAA 57.277 33.333 0.00 0.00 36.94 3.18
751 919 4.385358 AACCACAAACTGAATGGACAAC 57.615 40.909 0.00 0.00 36.94 3.32
752 920 3.360867 ACCACAAACTGAATGGACAACA 58.639 40.909 0.00 0.00 36.94 3.33
753 921 3.381272 ACCACAAACTGAATGGACAACAG 59.619 43.478 0.00 0.00 36.94 3.16
754 922 3.374745 CACAAACTGAATGGACAACAGC 58.625 45.455 0.00 0.00 35.38 4.40
755 923 3.067180 CACAAACTGAATGGACAACAGCT 59.933 43.478 0.00 0.00 35.38 4.24
756 924 3.701040 ACAAACTGAATGGACAACAGCTT 59.299 39.130 0.00 0.00 35.38 3.74
757 925 4.887071 ACAAACTGAATGGACAACAGCTTA 59.113 37.500 0.00 0.00 35.38 3.09
759 927 4.623932 ACTGAATGGACAACAGCTTAGA 57.376 40.909 0.00 0.00 35.38 2.10
760 928 5.171339 ACTGAATGGACAACAGCTTAGAT 57.829 39.130 0.00 0.00 35.38 1.98
761 929 4.940046 ACTGAATGGACAACAGCTTAGATG 59.060 41.667 0.00 0.00 35.38 2.90
762 930 4.910195 TGAATGGACAACAGCTTAGATGT 58.090 39.130 0.00 0.00 0.00 3.06
763 931 4.696877 TGAATGGACAACAGCTTAGATGTG 59.303 41.667 3.19 1.33 0.00 3.21
764 932 4.558226 ATGGACAACAGCTTAGATGTGA 57.442 40.909 3.19 0.00 0.00 3.58
766 934 3.070878 TGGACAACAGCTTAGATGTGACA 59.929 43.478 3.19 0.00 0.00 3.58
767 935 4.256920 GGACAACAGCTTAGATGTGACAT 58.743 43.478 3.19 0.00 0.00 3.06
768 936 5.046663 TGGACAACAGCTTAGATGTGACATA 60.047 40.000 3.19 0.00 0.00 2.29
769 937 5.874810 GGACAACAGCTTAGATGTGACATAA 59.125 40.000 3.19 0.00 0.00 1.90
771 939 6.467677 ACAACAGCTTAGATGTGACATAACT 58.532 36.000 3.19 0.00 0.00 2.24
772 940 7.611770 ACAACAGCTTAGATGTGACATAACTA 58.388 34.615 3.19 0.00 0.00 2.24
773 941 8.260818 ACAACAGCTTAGATGTGACATAACTAT 58.739 33.333 3.19 0.00 0.00 2.12
774 942 8.546244 CAACAGCTTAGATGTGACATAACTATG 58.454 37.037 3.19 0.92 39.55 2.23
778 946 7.923344 AGCTTAGATGTGACATAACTATGTGTC 59.077 37.037 7.09 0.30 46.20 3.67
779 947 7.169982 GCTTAGATGTGACATAACTATGTGTCC 59.830 40.741 7.09 0.00 46.20 4.02
780 948 6.798427 AGATGTGACATAACTATGTGTCCT 57.202 37.500 7.09 0.00 46.20 3.85
781 949 7.898014 AGATGTGACATAACTATGTGTCCTA 57.102 36.000 7.09 0.00 46.20 2.94
782 950 7.946207 AGATGTGACATAACTATGTGTCCTAG 58.054 38.462 7.09 0.00 46.20 3.02
783 951 7.780271 AGATGTGACATAACTATGTGTCCTAGA 59.220 37.037 7.09 0.00 46.20 2.43
784 952 7.898014 TGTGACATAACTATGTGTCCTAGAT 57.102 36.000 7.09 0.00 46.20 1.98
785 953 7.716612 TGTGACATAACTATGTGTCCTAGATG 58.283 38.462 7.09 0.00 46.20 2.90
786 954 7.148641 GTGACATAACTATGTGTCCTAGATGG 58.851 42.308 7.09 0.00 46.20 3.51
787 955 7.014326 GTGACATAACTATGTGTCCTAGATGGA 59.986 40.741 7.09 0.00 46.20 3.41
788 956 7.291411 ACATAACTATGTGTCCTAGATGGAC 57.709 40.000 7.80 7.80 46.65 4.02
789 957 6.267928 ACATAACTATGTGTCCTAGATGGACC 59.732 42.308 11.70 4.81 46.76 4.46
790 958 7.862691 ACATAACTATGTGTCCTAGATGGACCT 60.863 40.741 11.70 0.89 46.76 3.85
822 1125 4.015541 AGGAGGGAGTAGTAATTTGGAGGA 60.016 45.833 0.00 0.00 0.00 3.71
824 1127 5.209659 GAGGGAGTAGTAATTTGGAGGAGA 58.790 45.833 0.00 0.00 0.00 3.71
871 1182 4.215827 GGTCAACAAGAAGAGACGAGTCTA 59.784 45.833 5.65 0.00 40.61 2.59
872 1183 5.387279 GTCAACAAGAAGAGACGAGTCTAG 58.613 45.833 5.65 0.00 40.61 2.43
873 1184 4.456222 TCAACAAGAAGAGACGAGTCTAGG 59.544 45.833 5.65 0.00 40.61 3.02
874 1185 2.750712 ACAAGAAGAGACGAGTCTAGGC 59.249 50.000 5.65 0.00 40.61 3.93
875 1186 2.047002 AGAAGAGACGAGTCTAGGCC 57.953 55.000 5.65 0.00 40.61 5.19
876 1187 1.026584 GAAGAGACGAGTCTAGGCCC 58.973 60.000 5.65 0.00 40.61 5.80
877 1188 0.396001 AAGAGACGAGTCTAGGCCCC 60.396 60.000 5.65 0.00 40.61 5.80
878 1189 2.124236 AGACGAGTCTAGGCCCCG 60.124 66.667 0.00 5.35 38.35 5.73
879 1190 2.124403 GACGAGTCTAGGCCCCGA 60.124 66.667 12.77 0.00 0.00 5.14
880 1191 2.124236 ACGAGTCTAGGCCCCGAG 60.124 66.667 12.77 0.00 0.00 4.63
881 1192 2.124236 CGAGTCTAGGCCCCGAGT 60.124 66.667 0.00 0.00 0.00 4.18
882 1193 2.188161 CGAGTCTAGGCCCCGAGTC 61.188 68.421 14.01 14.01 0.00 3.36
957 1268 2.627515 ACAGAGCAAGAGCAGACAAA 57.372 45.000 0.00 0.00 45.49 2.83
958 1269 3.137446 ACAGAGCAAGAGCAGACAAAT 57.863 42.857 0.00 0.00 45.49 2.32
959 1270 4.277515 ACAGAGCAAGAGCAGACAAATA 57.722 40.909 0.00 0.00 45.49 1.40
990 1301 4.644685 TGGAAAACACCCAAGAAGAAGAAG 59.355 41.667 0.00 0.00 0.00 2.85
991 1302 4.887655 GGAAAACACCCAAGAAGAAGAAGA 59.112 41.667 0.00 0.00 0.00 2.87
1208 1569 2.042979 CTCCCATTTCCTTTTCTCCCCA 59.957 50.000 0.00 0.00 0.00 4.96
1318 1686 2.434331 CTCCCGGAACAGCCCAAA 59.566 61.111 0.73 0.00 0.00 3.28
1322 1690 1.373590 CCCGGAACAGCCCAAATACG 61.374 60.000 0.73 0.00 0.00 3.06
1859 2270 1.135094 TCAGCATCTCCTCCATTCCC 58.865 55.000 0.00 0.00 0.00 3.97
1979 2668 4.775058 ACTAGTGAGCTGTGTCTACTTG 57.225 45.455 0.00 0.00 0.00 3.16
2568 3354 1.795768 ACATAACTGTGTGTCCTGCG 58.204 50.000 0.00 0.00 33.22 5.18
2603 3389 3.342377 TCTGACAAAACACACTGGTCA 57.658 42.857 0.00 0.00 37.02 4.02
2619 3406 2.292192 TGGTCATTTCTCCCATTTCCCC 60.292 50.000 0.00 0.00 0.00 4.81
2736 3846 9.754382 AGTTTATGTACGAACTTTGAGACTTAA 57.246 29.630 0.00 0.00 32.43 1.85
2819 5099 6.056236 TCGATCAGCAGTTCTGTAGTAGTAT 58.944 40.000 1.78 0.00 43.32 2.12
2908 5191 4.893424 TTGTTGCAGTTTGTAGGAGAAC 57.107 40.909 0.00 0.00 0.00 3.01
2993 5287 0.397254 ACTCGGGCCTAGTGTAGCAT 60.397 55.000 10.32 0.00 0.00 3.79
3022 5316 7.402054 TGCATTATAACATAGGTTAGATGGGG 58.598 38.462 19.41 5.76 42.42 4.96
3109 5409 2.813172 TGATCTCGAGTGCATTTTTGCA 59.187 40.909 13.13 0.00 43.22 4.08
3173 5473 5.279910 CCTCTTGATCTTGAGTTCTTGGACT 60.280 44.000 12.27 0.00 0.00 3.85
3221 5528 4.008074 TGATCTTGAGTTCTTGGACACC 57.992 45.455 0.00 0.00 0.00 4.16
3260 5567 8.745837 CCTTATGATACGCAATTGAAACAAATC 58.254 33.333 10.34 3.57 0.00 2.17
3262 5569 6.266168 TGATACGCAATTGAAACAAATCCT 57.734 33.333 10.34 0.00 0.00 3.24
3263 5570 6.686630 TGATACGCAATTGAAACAAATCCTT 58.313 32.000 10.34 0.00 0.00 3.36
3330 5637 0.392461 TTGAGCGTGTGGATAAGGGC 60.392 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.760479 TTGCGAAAACCTCCTCCGGA 61.760 55.000 2.93 2.93 0.00 5.14
1 2 0.887387 TTTGCGAAAACCTCCTCCGG 60.887 55.000 0.00 0.00 0.00 5.14
2 3 0.948678 TTTTGCGAAAACCTCCTCCG 59.051 50.000 0.00 0.00 0.00 4.63
3 4 1.954382 ACTTTTGCGAAAACCTCCTCC 59.046 47.619 0.00 0.00 0.00 4.30
4 5 2.357952 ACACTTTTGCGAAAACCTCCTC 59.642 45.455 0.00 0.00 0.00 3.71
5 6 2.099098 CACACTTTTGCGAAAACCTCCT 59.901 45.455 0.00 0.00 0.00 3.69
6 7 2.159296 ACACACTTTTGCGAAAACCTCC 60.159 45.455 0.00 0.00 0.00 4.30
7 8 3.105937 GACACACTTTTGCGAAAACCTC 58.894 45.455 0.00 0.00 0.00 3.85
8 9 2.752903 AGACACACTTTTGCGAAAACCT 59.247 40.909 0.00 0.00 0.00 3.50
9 10 3.145212 AGACACACTTTTGCGAAAACC 57.855 42.857 0.00 0.00 0.00 3.27
10 11 3.917985 ACAAGACACACTTTTGCGAAAAC 59.082 39.130 0.00 0.00 36.61 2.43
11 12 4.167554 ACAAGACACACTTTTGCGAAAA 57.832 36.364 0.00 0.00 36.61 2.29
12 13 3.840890 ACAAGACACACTTTTGCGAAA 57.159 38.095 0.00 0.00 36.61 3.46
13 14 3.189495 TGAACAAGACACACTTTTGCGAA 59.811 39.130 0.00 0.00 36.61 4.70
14 15 2.744741 TGAACAAGACACACTTTTGCGA 59.255 40.909 0.00 0.00 36.61 5.10
15 16 3.129852 TGAACAAGACACACTTTTGCG 57.870 42.857 0.00 0.00 36.61 4.85
16 17 3.859386 CCTTGAACAAGACACACTTTTGC 59.141 43.478 14.99 0.00 40.79 3.68
17 18 5.309323 TCCTTGAACAAGACACACTTTTG 57.691 39.130 14.99 0.00 40.79 2.44
18 19 5.418840 ACATCCTTGAACAAGACACACTTTT 59.581 36.000 14.99 0.00 40.79 2.27
19 20 4.949856 ACATCCTTGAACAAGACACACTTT 59.050 37.500 14.99 0.00 40.79 2.66
20 21 4.526970 ACATCCTTGAACAAGACACACTT 58.473 39.130 14.99 0.00 40.79 3.16
21 22 4.156455 ACATCCTTGAACAAGACACACT 57.844 40.909 14.99 0.00 40.79 3.55
22 23 6.371809 TTTACATCCTTGAACAAGACACAC 57.628 37.500 14.99 0.00 40.79 3.82
23 24 6.514870 GCATTTACATCCTTGAACAAGACACA 60.515 38.462 14.99 0.00 40.79 3.72
24 25 5.858581 GCATTTACATCCTTGAACAAGACAC 59.141 40.000 14.99 0.00 40.79 3.67
25 26 5.534278 TGCATTTACATCCTTGAACAAGACA 59.466 36.000 14.99 3.03 40.79 3.41
26 27 6.012658 TGCATTTACATCCTTGAACAAGAC 57.987 37.500 14.99 0.00 40.79 3.01
27 28 6.647334 TTGCATTTACATCCTTGAACAAGA 57.353 33.333 14.99 3.36 40.79 3.02
28 29 7.712264 TTTTGCATTTACATCCTTGAACAAG 57.288 32.000 7.49 7.49 38.14 3.16
29 30 7.714377 ACATTTTGCATTTACATCCTTGAACAA 59.286 29.630 0.00 0.00 0.00 2.83
30 31 7.215789 ACATTTTGCATTTACATCCTTGAACA 58.784 30.769 0.00 0.00 0.00 3.18
31 32 7.656707 ACATTTTGCATTTACATCCTTGAAC 57.343 32.000 0.00 0.00 0.00 3.18
32 33 7.816995 GGTACATTTTGCATTTACATCCTTGAA 59.183 33.333 0.00 0.00 0.00 2.69
33 34 7.039434 TGGTACATTTTGCATTTACATCCTTGA 60.039 33.333 0.00 0.00 0.00 3.02
34 35 7.063308 GTGGTACATTTTGCATTTACATCCTTG 59.937 37.037 0.00 0.00 44.52 3.61
35 36 7.096551 GTGGTACATTTTGCATTTACATCCTT 58.903 34.615 0.00 0.00 44.52 3.36
36 37 6.624861 CGTGGTACATTTTGCATTTACATCCT 60.625 38.462 0.00 0.00 44.52 3.24
37 38 5.514914 CGTGGTACATTTTGCATTTACATCC 59.485 40.000 0.00 0.00 44.52 3.51
38 39 6.318628 TCGTGGTACATTTTGCATTTACATC 58.681 36.000 0.00 0.00 44.52 3.06
39 40 6.260870 TCGTGGTACATTTTGCATTTACAT 57.739 33.333 0.00 0.00 44.52 2.29
40 41 5.690997 TCGTGGTACATTTTGCATTTACA 57.309 34.783 0.00 0.00 44.52 2.41
41 42 6.639279 ACTTTCGTGGTACATTTTGCATTTAC 59.361 34.615 0.00 0.00 44.52 2.01
42 43 6.740110 ACTTTCGTGGTACATTTTGCATTTA 58.260 32.000 0.00 0.00 44.52 1.40
43 44 5.596845 ACTTTCGTGGTACATTTTGCATTT 58.403 33.333 0.00 0.00 44.52 2.32
44 45 5.195001 ACTTTCGTGGTACATTTTGCATT 57.805 34.783 0.00 0.00 44.52 3.56
45 46 4.846779 ACTTTCGTGGTACATTTTGCAT 57.153 36.364 0.00 0.00 44.52 3.96
46 47 4.336993 AGAACTTTCGTGGTACATTTTGCA 59.663 37.500 0.00 0.00 44.52 4.08
47 48 4.675114 CAGAACTTTCGTGGTACATTTTGC 59.325 41.667 0.00 0.00 44.52 3.68
48 49 4.675114 GCAGAACTTTCGTGGTACATTTTG 59.325 41.667 0.00 0.00 44.52 2.44
49 50 4.336993 TGCAGAACTTTCGTGGTACATTTT 59.663 37.500 0.00 0.00 44.52 1.82
50 51 3.880490 TGCAGAACTTTCGTGGTACATTT 59.120 39.130 0.00 0.00 44.52 2.32
51 52 3.472652 TGCAGAACTTTCGTGGTACATT 58.527 40.909 0.00 0.00 44.52 2.71
52 53 3.120321 TGCAGAACTTTCGTGGTACAT 57.880 42.857 0.00 0.00 44.52 2.29
53 54 2.605837 TGCAGAACTTTCGTGGTACA 57.394 45.000 0.00 0.00 0.00 2.90
54 55 3.955771 TTTGCAGAACTTTCGTGGTAC 57.044 42.857 0.00 0.00 0.00 3.34
55 56 3.500680 GGATTTGCAGAACTTTCGTGGTA 59.499 43.478 0.00 0.00 0.00 3.25
56 57 2.293399 GGATTTGCAGAACTTTCGTGGT 59.707 45.455 0.00 0.00 0.00 4.16
57 58 2.351738 GGGATTTGCAGAACTTTCGTGG 60.352 50.000 0.00 0.00 0.00 4.94
58 59 2.293122 TGGGATTTGCAGAACTTTCGTG 59.707 45.455 0.00 0.00 0.00 4.35
59 60 2.293399 GTGGGATTTGCAGAACTTTCGT 59.707 45.455 0.00 0.00 0.00 3.85
60 61 2.351738 GGTGGGATTTGCAGAACTTTCG 60.352 50.000 0.00 0.00 0.00 3.46
61 62 2.893489 AGGTGGGATTTGCAGAACTTTC 59.107 45.455 0.00 0.00 0.00 2.62
62 63 2.629617 CAGGTGGGATTTGCAGAACTTT 59.370 45.455 0.00 0.00 0.00 2.66
63 64 2.158475 TCAGGTGGGATTTGCAGAACTT 60.158 45.455 0.00 0.00 0.00 2.66
64 65 1.425066 TCAGGTGGGATTTGCAGAACT 59.575 47.619 0.00 0.00 0.00 3.01
65 66 1.815003 CTCAGGTGGGATTTGCAGAAC 59.185 52.381 0.00 0.00 0.00 3.01
66 67 1.887956 GCTCAGGTGGGATTTGCAGAA 60.888 52.381 0.00 0.00 0.00 3.02
67 68 0.322816 GCTCAGGTGGGATTTGCAGA 60.323 55.000 0.00 0.00 0.00 4.26
68 69 1.318158 GGCTCAGGTGGGATTTGCAG 61.318 60.000 0.00 0.00 0.00 4.41
69 70 1.304381 GGCTCAGGTGGGATTTGCA 60.304 57.895 0.00 0.00 0.00 4.08
70 71 0.255890 TAGGCTCAGGTGGGATTTGC 59.744 55.000 0.00 0.00 0.00 3.68
71 72 2.441001 AGATAGGCTCAGGTGGGATTTG 59.559 50.000 0.00 0.00 0.00 2.32
72 73 2.441001 CAGATAGGCTCAGGTGGGATTT 59.559 50.000 0.00 0.00 0.00 2.17
73 74 2.053244 CAGATAGGCTCAGGTGGGATT 58.947 52.381 0.00 0.00 0.00 3.01
74 75 1.221523 TCAGATAGGCTCAGGTGGGAT 59.778 52.381 0.00 0.00 0.00 3.85
75 76 0.636647 TCAGATAGGCTCAGGTGGGA 59.363 55.000 0.00 0.00 0.00 4.37
76 77 1.047002 CTCAGATAGGCTCAGGTGGG 58.953 60.000 0.00 0.00 0.00 4.61
77 78 0.392336 GCTCAGATAGGCTCAGGTGG 59.608 60.000 0.00 0.00 0.00 4.61
78 79 3.984838 GCTCAGATAGGCTCAGGTG 57.015 57.895 0.00 0.00 0.00 4.00
86 87 4.100035 TGTGTAATGAGTGGCTCAGATAGG 59.900 45.833 5.09 0.00 44.08 2.57
87 88 5.268118 TGTGTAATGAGTGGCTCAGATAG 57.732 43.478 5.09 0.00 44.08 2.08
88 89 5.221521 GGATGTGTAATGAGTGGCTCAGATA 60.222 44.000 5.09 0.00 44.08 1.98
89 90 4.444022 GGATGTGTAATGAGTGGCTCAGAT 60.444 45.833 5.09 0.00 44.08 2.90
90 91 3.118629 GGATGTGTAATGAGTGGCTCAGA 60.119 47.826 5.09 0.00 44.08 3.27
91 92 3.201290 GGATGTGTAATGAGTGGCTCAG 58.799 50.000 5.09 0.00 44.08 3.35
92 93 2.571202 TGGATGTGTAATGAGTGGCTCA 59.429 45.455 1.06 1.06 44.99 4.26
93 94 3.266510 TGGATGTGTAATGAGTGGCTC 57.733 47.619 0.00 0.00 0.00 4.70
94 95 3.719268 TTGGATGTGTAATGAGTGGCT 57.281 42.857 0.00 0.00 0.00 4.75
95 96 3.129287 CCTTTGGATGTGTAATGAGTGGC 59.871 47.826 0.00 0.00 0.00 5.01
96 97 3.129287 GCCTTTGGATGTGTAATGAGTGG 59.871 47.826 0.00 0.00 0.00 4.00
97 98 3.129287 GGCCTTTGGATGTGTAATGAGTG 59.871 47.826 0.00 0.00 0.00 3.51
98 99 3.356290 GGCCTTTGGATGTGTAATGAGT 58.644 45.455 0.00 0.00 0.00 3.41
99 100 2.689983 GGGCCTTTGGATGTGTAATGAG 59.310 50.000 0.84 0.00 0.00 2.90
100 101 2.042297 TGGGCCTTTGGATGTGTAATGA 59.958 45.455 4.53 0.00 0.00 2.57
101 102 2.166254 GTGGGCCTTTGGATGTGTAATG 59.834 50.000 4.53 0.00 0.00 1.90
102 103 2.225242 TGTGGGCCTTTGGATGTGTAAT 60.225 45.455 4.53 0.00 0.00 1.89
103 104 1.145945 TGTGGGCCTTTGGATGTGTAA 59.854 47.619 4.53 0.00 0.00 2.41
104 105 0.774276 TGTGGGCCTTTGGATGTGTA 59.226 50.000 4.53 0.00 0.00 2.90
105 106 0.540365 CTGTGGGCCTTTGGATGTGT 60.540 55.000 4.53 0.00 0.00 3.72
106 107 0.540365 ACTGTGGGCCTTTGGATGTG 60.540 55.000 4.53 0.00 0.00 3.21
107 108 0.540365 CACTGTGGGCCTTTGGATGT 60.540 55.000 4.53 0.00 0.00 3.06
108 109 1.252904 CCACTGTGGGCCTTTGGATG 61.253 60.000 19.23 0.00 32.67 3.51
109 110 1.077265 CCACTGTGGGCCTTTGGAT 59.923 57.895 19.23 0.00 32.67 3.41
110 111 2.520458 CCACTGTGGGCCTTTGGA 59.480 61.111 19.23 0.00 32.67 3.53
118 119 0.465705 ATACGATCTGCCACTGTGGG 59.534 55.000 27.02 12.41 38.19 4.61
119 120 1.136891 TCATACGATCTGCCACTGTGG 59.863 52.381 22.46 22.46 41.55 4.17
120 121 2.584492 TCATACGATCTGCCACTGTG 57.416 50.000 0.00 0.00 0.00 3.66
121 122 2.287849 CGATCATACGATCTGCCACTGT 60.288 50.000 0.00 0.00 45.11 3.55
122 123 2.323059 CGATCATACGATCTGCCACTG 58.677 52.381 0.00 0.00 45.11 3.66
123 124 1.336332 GCGATCATACGATCTGCCACT 60.336 52.381 0.00 0.00 45.11 4.00
124 125 1.063806 GCGATCATACGATCTGCCAC 58.936 55.000 0.00 0.00 45.11 5.01
125 126 0.673437 TGCGATCATACGATCTGCCA 59.327 50.000 11.21 0.00 45.11 4.92
126 127 1.063806 GTGCGATCATACGATCTGCC 58.936 55.000 11.21 2.64 45.11 4.85
127 128 1.063806 GGTGCGATCATACGATCTGC 58.936 55.000 8.12 8.12 45.11 4.26
128 129 2.713895 AGGTGCGATCATACGATCTG 57.286 50.000 0.00 0.00 45.11 2.90
129 130 3.146847 TGTAGGTGCGATCATACGATCT 58.853 45.455 0.00 0.00 45.11 2.75
130 131 3.554259 TGTAGGTGCGATCATACGATC 57.446 47.619 0.00 0.00 44.04 3.69
131 132 3.552273 GGTTGTAGGTGCGATCATACGAT 60.552 47.826 0.00 0.00 35.09 3.73
132 133 2.223641 GGTTGTAGGTGCGATCATACGA 60.224 50.000 0.00 0.00 35.09 3.43
133 134 2.124903 GGTTGTAGGTGCGATCATACG 58.875 52.381 0.00 0.00 0.00 3.06
134 135 2.159014 TGGGTTGTAGGTGCGATCATAC 60.159 50.000 0.00 0.00 0.00 2.39
135 136 2.102420 CTGGGTTGTAGGTGCGATCATA 59.898 50.000 0.00 0.00 0.00 2.15
136 137 0.908910 TGGGTTGTAGGTGCGATCAT 59.091 50.000 0.00 0.00 0.00 2.45
137 138 0.249120 CTGGGTTGTAGGTGCGATCA 59.751 55.000 0.00 0.00 0.00 2.92
138 139 0.535335 TCTGGGTTGTAGGTGCGATC 59.465 55.000 0.00 0.00 0.00 3.69
139 140 1.139058 GATCTGGGTTGTAGGTGCGAT 59.861 52.381 0.00 0.00 0.00 4.58
140 141 0.535335 GATCTGGGTTGTAGGTGCGA 59.465 55.000 0.00 0.00 0.00 5.10
141 142 0.462047 GGATCTGGGTTGTAGGTGCG 60.462 60.000 0.00 0.00 0.00 5.34
142 143 0.912486 AGGATCTGGGTTGTAGGTGC 59.088 55.000 0.00 0.00 0.00 5.01
143 144 1.909302 ACAGGATCTGGGTTGTAGGTG 59.091 52.381 0.00 0.00 35.51 4.00
144 145 2.344093 ACAGGATCTGGGTTGTAGGT 57.656 50.000 0.00 0.00 35.51 3.08
145 146 3.375699 AGTACAGGATCTGGGTTGTAGG 58.624 50.000 0.00 0.00 35.51 3.18
146 147 5.202004 ACTAGTACAGGATCTGGGTTGTAG 58.798 45.833 0.00 0.00 35.51 2.74
147 148 5.202746 ACTAGTACAGGATCTGGGTTGTA 57.797 43.478 0.00 0.00 35.51 2.41
148 149 4.062490 ACTAGTACAGGATCTGGGTTGT 57.938 45.455 0.00 0.00 35.51 3.32
149 150 4.759782 CAACTAGTACAGGATCTGGGTTG 58.240 47.826 0.00 0.00 35.51 3.77
150 151 3.197983 GCAACTAGTACAGGATCTGGGTT 59.802 47.826 0.00 0.00 35.51 4.11
151 152 2.766828 GCAACTAGTACAGGATCTGGGT 59.233 50.000 0.00 0.00 35.51 4.51
152 153 2.103263 GGCAACTAGTACAGGATCTGGG 59.897 54.545 0.00 0.00 35.51 4.45
153 154 2.103263 GGGCAACTAGTACAGGATCTGG 59.897 54.545 0.00 0.00 35.51 3.86
154 155 2.103263 GGGGCAACTAGTACAGGATCTG 59.897 54.545 0.00 0.00 37.52 2.90
155 156 2.399580 GGGGCAACTAGTACAGGATCT 58.600 52.381 0.00 0.00 0.00 2.75
156 157 1.416772 GGGGGCAACTAGTACAGGATC 59.583 57.143 0.00 0.00 0.00 3.36
157 158 1.508256 GGGGGCAACTAGTACAGGAT 58.492 55.000 0.00 0.00 0.00 3.24
158 159 0.974010 CGGGGGCAACTAGTACAGGA 60.974 60.000 0.00 0.00 0.00 3.86
159 160 1.520666 CGGGGGCAACTAGTACAGG 59.479 63.158 0.00 0.00 0.00 4.00
160 161 1.153429 GCGGGGGCAACTAGTACAG 60.153 63.158 0.00 0.00 0.00 2.74
161 162 1.481901 TTGCGGGGGCAACTAGTACA 61.482 55.000 0.00 0.00 0.00 2.90
162 163 0.321830 TTTGCGGGGGCAACTAGTAC 60.322 55.000 0.00 0.00 0.00 2.73
163 164 0.400975 TTTTGCGGGGGCAACTAGTA 59.599 50.000 0.00 0.00 0.00 1.82
164 165 0.893727 CTTTTGCGGGGGCAACTAGT 60.894 55.000 0.28 0.00 0.00 2.57
165 166 0.608035 TCTTTTGCGGGGGCAACTAG 60.608 55.000 0.28 2.92 0.00 2.57
166 167 0.039035 ATCTTTTGCGGGGGCAACTA 59.961 50.000 0.28 0.00 0.00 2.24
167 168 0.831711 AATCTTTTGCGGGGGCAACT 60.832 50.000 0.28 0.00 0.00 3.16
168 169 0.670239 CAATCTTTTGCGGGGGCAAC 60.670 55.000 0.28 0.00 0.00 4.17
169 170 1.670590 CAATCTTTTGCGGGGGCAA 59.329 52.632 0.00 0.00 0.00 4.52
170 171 3.375438 CAATCTTTTGCGGGGGCA 58.625 55.556 0.00 0.00 0.00 5.36
183 184 0.179129 CGGGCCACATTTCTGCAATC 60.179 55.000 4.39 0.00 0.00 2.67
252 253 0.382873 GCATCATCCAATCTGCGCAA 59.617 50.000 13.05 2.72 0.00 4.85
268 270 3.005367 CCTTCTTTTAACGGGTTGTGCAT 59.995 43.478 0.00 0.00 0.00 3.96
272 274 2.940158 AGCCTTCTTTTAACGGGTTGT 58.060 42.857 0.00 0.00 0.00 3.32
280 282 6.705825 GCCTTTTCAATGAAGCCTTCTTTTAA 59.294 34.615 5.96 1.21 31.48 1.52
299 301 0.988832 TGATGGAGTACCCGCCTTTT 59.011 50.000 0.00 0.00 37.93 2.27
300 302 1.213296 ATGATGGAGTACCCGCCTTT 58.787 50.000 0.00 0.00 37.93 3.11
331 337 0.874175 GTGACGTGTGTGTAGCAGCA 60.874 55.000 0.00 0.00 0.00 4.41
334 340 2.924880 GCATAGTGACGTGTGTGTAGCA 60.925 50.000 0.00 0.00 0.00 3.49
357 363 4.025396 CGACTGGATCATGTAACAATCTGC 60.025 45.833 0.00 0.00 0.00 4.26
359 365 5.598416 TCGACTGGATCATGTAACAATCT 57.402 39.130 0.00 0.00 0.00 2.40
386 392 2.164663 CGTCATACACATGCGCGGT 61.165 57.895 8.83 0.00 31.73 5.68
451 457 4.022935 TGTTTAGTCCACGACGATACTTGT 60.023 41.667 0.00 0.00 37.67 3.16
477 483 7.315142 AGCCAAATACGATAATGCCATTTATG 58.685 34.615 0.00 0.00 0.00 1.90
657 825 5.724370 TGGGAGTTTAGATGTGACATCCTTA 59.276 40.000 21.05 6.22 0.00 2.69
658 826 4.536090 TGGGAGTTTAGATGTGACATCCTT 59.464 41.667 21.05 7.22 0.00 3.36
660 828 4.192317 GTGGGAGTTTAGATGTGACATCC 58.808 47.826 21.05 6.28 0.00 3.51
661 829 4.832248 TGTGGGAGTTTAGATGTGACATC 58.168 43.478 17.46 17.46 0.00 3.06
662 830 4.908601 TGTGGGAGTTTAGATGTGACAT 57.091 40.909 0.00 0.00 0.00 3.06
663 831 4.698201 TTGTGGGAGTTTAGATGTGACA 57.302 40.909 0.00 0.00 0.00 3.58
664 832 7.865706 ATATTTGTGGGAGTTTAGATGTGAC 57.134 36.000 0.00 0.00 0.00 3.67
672 840 8.792633 GCTGCATTATATATTTGTGGGAGTTTA 58.207 33.333 0.00 0.00 0.00 2.01
676 844 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
677 845 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
679 847 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
680 848 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
719 887 9.701355 CATTCAGTTTGTGGTTTATTTTTGTTC 57.299 29.630 0.00 0.00 0.00 3.18
720 888 8.672815 CCATTCAGTTTGTGGTTTATTTTTGTT 58.327 29.630 0.00 0.00 0.00 2.83
721 889 8.043710 TCCATTCAGTTTGTGGTTTATTTTTGT 58.956 29.630 0.00 0.00 34.61 2.83
722 890 8.334632 GTCCATTCAGTTTGTGGTTTATTTTTG 58.665 33.333 0.00 0.00 34.61 2.44
723 891 8.043710 TGTCCATTCAGTTTGTGGTTTATTTTT 58.956 29.630 0.00 0.00 34.61 1.94
724 892 7.560368 TGTCCATTCAGTTTGTGGTTTATTTT 58.440 30.769 0.00 0.00 34.61 1.82
726 894 6.723298 TGTCCATTCAGTTTGTGGTTTATT 57.277 33.333 0.00 0.00 34.61 1.40
727 895 6.097554 TGTTGTCCATTCAGTTTGTGGTTTAT 59.902 34.615 0.00 0.00 34.61 1.40
728 896 5.419155 TGTTGTCCATTCAGTTTGTGGTTTA 59.581 36.000 0.00 0.00 34.61 2.01
729 897 4.221703 TGTTGTCCATTCAGTTTGTGGTTT 59.778 37.500 0.00 0.00 34.61 3.27
731 899 3.360867 TGTTGTCCATTCAGTTTGTGGT 58.639 40.909 0.00 0.00 34.61 4.16
733 901 3.067180 AGCTGTTGTCCATTCAGTTTGTG 59.933 43.478 0.00 0.00 0.00 3.33
734 902 3.290710 AGCTGTTGTCCATTCAGTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
735 903 3.996150 AGCTGTTGTCCATTCAGTTTG 57.004 42.857 0.00 0.00 0.00 2.93
736 904 5.376625 TCTAAGCTGTTGTCCATTCAGTTT 58.623 37.500 0.00 0.00 36.77 2.66
737 905 4.973168 TCTAAGCTGTTGTCCATTCAGTT 58.027 39.130 0.00 0.00 0.00 3.16
739 907 4.940046 ACATCTAAGCTGTTGTCCATTCAG 59.060 41.667 0.00 0.00 0.00 3.02
742 910 4.697352 GTCACATCTAAGCTGTTGTCCATT 59.303 41.667 0.00 0.00 0.00 3.16
743 911 4.256920 GTCACATCTAAGCTGTTGTCCAT 58.743 43.478 0.00 0.00 0.00 3.41
744 912 3.070878 TGTCACATCTAAGCTGTTGTCCA 59.929 43.478 0.00 0.00 0.00 4.02
745 913 3.664107 TGTCACATCTAAGCTGTTGTCC 58.336 45.455 0.00 0.00 0.00 4.02
746 914 6.591834 AGTTATGTCACATCTAAGCTGTTGTC 59.408 38.462 0.00 0.00 0.00 3.18
747 915 6.467677 AGTTATGTCACATCTAAGCTGTTGT 58.532 36.000 0.00 0.00 0.00 3.32
749 917 8.260818 ACATAGTTATGTCACATCTAAGCTGTT 58.739 33.333 0.00 0.00 42.96 3.16
750 918 7.708322 CACATAGTTATGTCACATCTAAGCTGT 59.292 37.037 0.00 0.00 44.57 4.40
751 919 7.708322 ACACATAGTTATGTCACATCTAAGCTG 59.292 37.037 0.00 0.00 44.57 4.24
752 920 7.786030 ACACATAGTTATGTCACATCTAAGCT 58.214 34.615 0.00 0.00 44.57 3.74
753 921 7.169982 GGACACATAGTTATGTCACATCTAAGC 59.830 40.741 0.00 0.00 45.83 3.09
754 922 8.417106 AGGACACATAGTTATGTCACATCTAAG 58.583 37.037 0.00 0.00 45.83 2.18
755 923 8.306313 AGGACACATAGTTATGTCACATCTAA 57.694 34.615 0.00 0.00 45.83 2.10
756 924 7.898014 AGGACACATAGTTATGTCACATCTA 57.102 36.000 0.00 0.00 45.83 1.98
757 925 6.798427 AGGACACATAGTTATGTCACATCT 57.202 37.500 0.00 0.00 45.83 2.90
759 927 7.898014 TCTAGGACACATAGTTATGTCACAT 57.102 36.000 0.00 0.00 45.83 3.21
760 928 7.201911 CCATCTAGGACACATAGTTATGTCACA 60.202 40.741 6.70 0.00 45.83 3.58
761 929 7.014326 TCCATCTAGGACACATAGTTATGTCAC 59.986 40.741 6.70 0.65 45.83 3.67
762 930 7.066781 TCCATCTAGGACACATAGTTATGTCA 58.933 38.462 6.70 0.00 45.83 3.58
763 931 7.526142 TCCATCTAGGACACATAGTTATGTC 57.474 40.000 1.87 0.00 42.46 3.06
778 946 5.045578 TCCTTCTCAAAAAGGTCCATCTAGG 60.046 44.000 2.81 0.00 45.16 3.02
779 947 6.054860 TCCTTCTCAAAAAGGTCCATCTAG 57.945 41.667 2.81 0.00 45.16 2.43
780 948 5.045578 CCTCCTTCTCAAAAAGGTCCATCTA 60.046 44.000 2.81 0.00 45.16 1.98
781 949 4.263683 CCTCCTTCTCAAAAAGGTCCATCT 60.264 45.833 2.81 0.00 45.16 2.90
782 950 4.013050 CCTCCTTCTCAAAAAGGTCCATC 58.987 47.826 2.81 0.00 45.16 3.51
783 951 3.245407 CCCTCCTTCTCAAAAAGGTCCAT 60.245 47.826 2.81 0.00 45.16 3.41
784 952 2.108250 CCCTCCTTCTCAAAAAGGTCCA 59.892 50.000 2.81 0.00 45.16 4.02
785 953 2.375509 TCCCTCCTTCTCAAAAAGGTCC 59.624 50.000 2.81 0.00 45.16 4.46
786 954 3.073209 ACTCCCTCCTTCTCAAAAAGGTC 59.927 47.826 2.81 0.00 45.16 3.85
787 955 3.056832 ACTCCCTCCTTCTCAAAAAGGT 58.943 45.455 2.81 0.00 45.16 3.50
788 956 3.797559 ACTCCCTCCTTCTCAAAAAGG 57.202 47.619 0.00 0.00 46.11 3.11
789 957 5.491323 ACTACTCCCTCCTTCTCAAAAAG 57.509 43.478 0.00 0.00 0.00 2.27
790 958 7.569599 ATTACTACTCCCTCCTTCTCAAAAA 57.430 36.000 0.00 0.00 0.00 1.94
796 964 5.600749 TCCAAATTACTACTCCCTCCTTCT 58.399 41.667 0.00 0.00 0.00 2.85
876 1187 4.436998 GACGTGGCCCTGACTCGG 62.437 72.222 0.00 0.00 0.00 4.63
877 1188 3.680786 TGACGTGGCCCTGACTCG 61.681 66.667 0.00 0.00 0.00 4.18
878 1189 2.048127 GTGACGTGGCCCTGACTC 60.048 66.667 0.00 0.00 0.00 3.36
879 1190 1.696097 AAAGTGACGTGGCCCTGACT 61.696 55.000 0.00 0.00 0.00 3.41
880 1191 0.818040 AAAAGTGACGTGGCCCTGAC 60.818 55.000 0.00 0.00 0.00 3.51
881 1192 0.534203 GAAAAGTGACGTGGCCCTGA 60.534 55.000 0.00 0.00 0.00 3.86
882 1193 1.515521 GGAAAAGTGACGTGGCCCTG 61.516 60.000 0.00 0.00 0.00 4.45
957 1268 0.679960 GTGTTTTCCAGCCGCCCTAT 60.680 55.000 0.00 0.00 0.00 2.57
958 1269 1.302993 GTGTTTTCCAGCCGCCCTA 60.303 57.895 0.00 0.00 0.00 3.53
959 1270 2.597510 GTGTTTTCCAGCCGCCCT 60.598 61.111 0.00 0.00 0.00 5.19
990 1301 0.453390 CTTCCGCCATTGCCTTCTTC 59.547 55.000 0.00 0.00 0.00 2.87
991 1302 1.598701 GCTTCCGCCATTGCCTTCTT 61.599 55.000 0.00 0.00 0.00 2.52
1208 1569 4.345257 AGCGGACCAGTCATCATATAAGTT 59.655 41.667 0.00 0.00 0.00 2.66
1309 1677 0.108329 CCTCGACGTATTTGGGCTGT 60.108 55.000 0.00 0.00 0.00 4.40
1318 1686 2.827190 TCTGCGCCCTCGACGTAT 60.827 61.111 4.18 0.00 38.10 3.06
1859 2270 5.576447 AAAGTAGGGCGTTTTTATCCATG 57.424 39.130 0.00 0.00 0.00 3.66
1979 2668 5.047092 CAGGCCCAATTTCCCATATATGAAC 60.047 44.000 14.54 0.00 0.00 3.18
2528 3314 4.398988 TGTTTGGCCATAACTCATAAGCAG 59.601 41.667 22.78 0.00 0.00 4.24
2568 3354 4.193826 TGTCAGAACATCTAACTCCAGC 57.806 45.455 0.00 0.00 0.00 4.85
2603 3389 3.246461 ACCAATGGGGAAATGGGAGAAAT 60.246 43.478 3.55 0.00 41.15 2.17
2619 3406 3.441572 AGGCTCGAAATCTCAAACCAATG 59.558 43.478 0.00 0.00 0.00 2.82
2736 3846 1.079127 CTTTGCGAGGACCATCGGT 60.079 57.895 13.06 0.00 42.94 4.69
2819 5099 8.500753 ACCGTATACAAGAGCATTTTAATTGA 57.499 30.769 3.32 0.00 0.00 2.57
2916 5204 2.743752 CGACTGCAACATCAGCGGG 61.744 63.158 0.00 0.00 42.62 6.13
3022 5316 2.165301 CGCGCTGTTACCTGCTACC 61.165 63.158 5.56 0.00 33.71 3.18
3107 5407 0.675633 ACAAACAGGAACAGCCATGC 59.324 50.000 0.00 0.00 40.02 4.06
3109 5409 3.490761 CGAAAACAAACAGGAACAGCCAT 60.491 43.478 0.00 0.00 40.02 4.40
3173 5473 3.073411 TGATCATTATCCAGGGGGTCA 57.927 47.619 0.00 0.00 34.93 4.02
3221 5528 7.753580 TGCGTATCATAAGGACATATTTAGTCG 59.246 37.037 0.00 0.00 36.87 4.18
3293 5600 3.376918 GAGCCCACTTTGCAGCCC 61.377 66.667 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.