Multiple sequence alignment - TraesCS5D01G514900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G514900 chr5D 100.000 3567 0 0 1 3567 538426234 538422668 0.000000e+00 6588.0
1 TraesCS5D01G514900 chr5D 86.130 2062 174 47 864 2877 538442385 538440388 0.000000e+00 2121.0
2 TraesCS5D01G514900 chr5D 83.519 1165 124 36 973 2104 538621541 538622670 0.000000e+00 1026.0
3 TraesCS5D01G514900 chr5D 86.232 966 102 18 981 1936 538655471 538656415 0.000000e+00 1018.0
4 TraesCS5D01G514900 chr5D 85.809 902 90 18 968 1851 538417306 538416425 0.000000e+00 922.0
5 TraesCS5D01G514900 chr5D 85.474 654 62 17 2216 2841 538622736 538623384 0.000000e+00 651.0
6 TraesCS5D01G514900 chr5D 82.345 742 108 16 1 740 29876910 29877630 1.090000e-174 623.0
7 TraesCS5D01G514900 chr5D 90.828 447 33 4 2204 2645 538656458 538656901 3.070000e-165 592.0
8 TraesCS5D01G514900 chr4A 88.481 2127 142 42 852 2920 631494112 631496193 0.000000e+00 2475.0
9 TraesCS5D01G514900 chr4A 85.445 1965 185 44 879 2784 631475865 631477787 0.000000e+00 1951.0
10 TraesCS5D01G514900 chr4A 84.417 969 114 20 975 1936 630899253 630898315 0.000000e+00 918.0
11 TraesCS5D01G514900 chr4A 83.562 1022 99 28 1661 2645 631501051 631502040 0.000000e+00 893.0
12 TraesCS5D01G514900 chr4A 82.152 1115 121 31 1552 2628 630877579 630876505 0.000000e+00 885.0
13 TraesCS5D01G514900 chr4A 90.287 628 48 6 2923 3547 631496487 631497104 0.000000e+00 809.0
14 TraesCS5D01G514900 chr4A 84.414 802 101 20 1 800 631493318 631494097 0.000000e+00 767.0
15 TraesCS5D01G514900 chr4A 82.773 743 106 17 1 738 695771151 695770426 0.000000e+00 643.0
16 TraesCS5D01G514900 chr4A 86.467 569 39 18 939 1495 630878139 630877597 1.100000e-164 590.0
17 TraesCS5D01G514900 chr4A 85.278 557 37 20 975 1513 631507182 631507711 1.890000e-147 532.0
18 TraesCS5D01G514900 chr4A 79.574 235 36 7 2618 2841 630876482 630876249 1.330000e-34 158.0
19 TraesCS5D01G514900 chr4A 81.313 198 24 8 2656 2841 630897800 630897604 7.980000e-32 148.0
20 TraesCS5D01G514900 chr5B 90.414 1450 83 18 882 2293 679405435 679404004 0.000000e+00 1857.0
21 TraesCS5D01G514900 chr5B 91.742 1223 60 7 2330 3546 679404005 679402818 0.000000e+00 1661.0
22 TraesCS5D01G514900 chr5B 81.469 1716 213 44 966 2645 679672180 679673826 0.000000e+00 1310.0
23 TraesCS5D01G514900 chr5B 88.203 1085 82 21 1000 2066 679559834 679558778 0.000000e+00 1253.0
24 TraesCS5D01G514900 chr5B 89.062 448 42 5 2226 2667 679558585 679558139 1.870000e-152 549.0
25 TraesCS5D01G514900 chr5B 87.500 144 15 2 2734 2877 679558116 679557976 2.850000e-36 163.0
26 TraesCS5D01G514900 chrUn 82.321 1103 138 30 975 2043 67363415 67362336 0.000000e+00 904.0
27 TraesCS5D01G514900 chrUn 81.374 757 76 28 2149 2841 67362286 67361531 1.120000e-154 556.0
28 TraesCS5D01G514900 chr1D 88.262 656 54 9 2241 2877 6386263 6385612 0.000000e+00 763.0
29 TraesCS5D01G514900 chr1D 82.819 745 99 21 1 740 437274692 437273972 1.080000e-179 640.0
30 TraesCS5D01G514900 chr1D 80.866 716 123 12 4 716 9021319 9020615 5.200000e-153 551.0
31 TraesCS5D01G514900 chr3D 82.615 742 109 16 1 739 8383113 8383837 3.880000e-179 638.0
32 TraesCS5D01G514900 chr3D 95.000 40 2 0 2877 2916 534666741 534666702 2.970000e-06 63.9
33 TraesCS5D01G514900 chr2B 81.855 744 120 11 4 743 528820327 528819595 2.350000e-171 612.0
34 TraesCS5D01G514900 chr6B 83.771 647 92 9 4 648 239337685 239337050 5.100000e-168 601.0
35 TraesCS5D01G514900 chr7B 81.767 713 112 13 4 714 6005213 6004517 6.640000e-162 580.0
36 TraesCS5D01G514900 chr7A 87.324 71 5 4 2875 2942 64372701 64372770 1.060000e-10 78.7
37 TraesCS5D01G514900 chr3B 93.182 44 2 1 2878 2921 785044333 785044375 2.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G514900 chr5D 538422668 538426234 3566 True 6588.000000 6588 100.0000 1 3567 1 chr5D.!!$R2 3566
1 TraesCS5D01G514900 chr5D 538440388 538442385 1997 True 2121.000000 2121 86.1300 864 2877 1 chr5D.!!$R3 2013
2 TraesCS5D01G514900 chr5D 538416425 538417306 881 True 922.000000 922 85.8090 968 1851 1 chr5D.!!$R1 883
3 TraesCS5D01G514900 chr5D 538621541 538623384 1843 False 838.500000 1026 84.4965 973 2841 2 chr5D.!!$F2 1868
4 TraesCS5D01G514900 chr5D 538655471 538656901 1430 False 805.000000 1018 88.5300 981 2645 2 chr5D.!!$F3 1664
5 TraesCS5D01G514900 chr5D 29876910 29877630 720 False 623.000000 623 82.3450 1 740 1 chr5D.!!$F1 739
6 TraesCS5D01G514900 chr4A 631475865 631477787 1922 False 1951.000000 1951 85.4450 879 2784 1 chr4A.!!$F1 1905
7 TraesCS5D01G514900 chr4A 631493318 631502040 8722 False 1236.000000 2475 86.6860 1 3547 4 chr4A.!!$F3 3546
8 TraesCS5D01G514900 chr4A 695770426 695771151 725 True 643.000000 643 82.7730 1 738 1 chr4A.!!$R1 737
9 TraesCS5D01G514900 chr4A 630876249 630878139 1890 True 544.333333 885 82.7310 939 2841 3 chr4A.!!$R2 1902
10 TraesCS5D01G514900 chr4A 630897604 630899253 1649 True 533.000000 918 82.8650 975 2841 2 chr4A.!!$R3 1866
11 TraesCS5D01G514900 chr4A 631507182 631507711 529 False 532.000000 532 85.2780 975 1513 1 chr4A.!!$F2 538
12 TraesCS5D01G514900 chr5B 679402818 679405435 2617 True 1759.000000 1857 91.0780 882 3546 2 chr5B.!!$R1 2664
13 TraesCS5D01G514900 chr5B 679672180 679673826 1646 False 1310.000000 1310 81.4690 966 2645 1 chr5B.!!$F1 1679
14 TraesCS5D01G514900 chr5B 679557976 679559834 1858 True 655.000000 1253 88.2550 1000 2877 3 chr5B.!!$R2 1877
15 TraesCS5D01G514900 chrUn 67361531 67363415 1884 True 730.000000 904 81.8475 975 2841 2 chrUn.!!$R1 1866
16 TraesCS5D01G514900 chr1D 6385612 6386263 651 True 763.000000 763 88.2620 2241 2877 1 chr1D.!!$R1 636
17 TraesCS5D01G514900 chr1D 437273972 437274692 720 True 640.000000 640 82.8190 1 740 1 chr1D.!!$R3 739
18 TraesCS5D01G514900 chr1D 9020615 9021319 704 True 551.000000 551 80.8660 4 716 1 chr1D.!!$R2 712
19 TraesCS5D01G514900 chr3D 8383113 8383837 724 False 638.000000 638 82.6150 1 739 1 chr3D.!!$F1 738
20 TraesCS5D01G514900 chr2B 528819595 528820327 732 True 612.000000 612 81.8550 4 743 1 chr2B.!!$R1 739
21 TraesCS5D01G514900 chr6B 239337050 239337685 635 True 601.000000 601 83.7710 4 648 1 chr6B.!!$R1 644
22 TraesCS5D01G514900 chr7B 6004517 6005213 696 True 580.000000 580 81.7670 4 714 1 chr7B.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 275 0.108804 TCGTGGCGATGAGGACTTTC 60.109 55.0 0.0 0.0 0.0 2.62 F
964 991 0.313987 GGAAAACACCCAAGAAGCGG 59.686 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2165 0.363512 CGACAGACGAACGCATGAAG 59.636 55.0 0.0 0.0 45.77 3.02 R
2800 3281 1.320344 GGGAAATGGGAGAAACGGCC 61.320 60.0 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.537143 TTCATTGGGTGCTTGACGCT 60.537 50.000 0.00 0.00 40.11 5.07
55 56 0.955428 TCATTGGGTGCTTGACGCTC 60.955 55.000 0.00 0.00 40.11 5.03
124 125 1.984570 CCGAGTGGCTTCAGGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
125 126 1.216710 CGAGTGGCTTCAGGAGGAC 59.783 63.158 0.00 0.00 0.00 3.85
160 161 2.027653 TCGGTGCCTGTTGACATTATGA 60.028 45.455 0.00 0.00 0.00 2.15
168 169 5.124457 GCCTGTTGACATTATGAGACATGTT 59.876 40.000 0.00 0.00 33.62 2.71
170 171 6.372381 CCTGTTGACATTATGAGACATGTTGA 59.628 38.462 0.00 0.00 33.62 3.18
197 198 4.380531 TCGATTTCCATGGTGAAGATAGC 58.619 43.478 12.58 0.00 0.00 2.97
220 221 0.175760 GGAGAACGTCATGCTGGCTA 59.824 55.000 0.00 0.00 0.00 3.93
223 224 1.276421 AGAACGTCATGCTGGCTAAGT 59.724 47.619 0.00 0.00 0.00 2.24
225 226 0.898320 ACGTCATGCTGGCTAAGTCT 59.102 50.000 0.00 0.00 0.00 3.24
226 227 1.284657 CGTCATGCTGGCTAAGTCTG 58.715 55.000 0.00 0.00 0.00 3.51
228 229 2.548875 GTCATGCTGGCTAAGTCTGAG 58.451 52.381 0.00 0.00 0.00 3.35
230 231 0.179936 ATGCTGGCTAAGTCTGAGGC 59.820 55.000 3.67 3.67 39.84 4.70
232 233 1.621672 GCTGGCTAAGTCTGAGGCCT 61.622 60.000 3.86 3.86 44.36 5.19
233 234 1.781786 CTGGCTAAGTCTGAGGCCTA 58.218 55.000 4.42 0.00 44.36 3.93
234 235 1.686052 CTGGCTAAGTCTGAGGCCTAG 59.314 57.143 4.42 3.84 44.36 3.02
240 243 4.585162 GCTAAGTCTGAGGCCTAGTAATGA 59.415 45.833 4.42 0.00 0.00 2.57
272 275 0.108804 TCGTGGCGATGAGGACTTTC 60.109 55.000 0.00 0.00 0.00 2.62
310 313 0.749091 ATAGCAGCAGCATCGGCAAA 60.749 50.000 3.17 0.00 45.49 3.68
311 314 1.371337 TAGCAGCAGCATCGGCAAAG 61.371 55.000 3.17 0.00 45.49 2.77
313 316 1.582968 CAGCAGCATCGGCAAAGTT 59.417 52.632 0.00 0.00 44.61 2.66
335 338 1.280746 CGGCAGCACAAGTGAAGTG 59.719 57.895 4.04 0.00 39.92 3.16
411 414 1.211703 TGGCAGTGACCTTGTTGAAGA 59.788 47.619 0.00 0.00 0.00 2.87
424 427 5.750067 CCTTGTTGAAGACATTGTTTTGAGG 59.250 40.000 0.00 0.00 38.26 3.86
426 429 4.709397 TGTTGAAGACATTGTTTTGAGGGT 59.291 37.500 0.00 0.00 32.00 4.34
427 430 4.916983 TGAAGACATTGTTTTGAGGGTG 57.083 40.909 0.00 0.00 0.00 4.61
428 431 3.068024 TGAAGACATTGTTTTGAGGGTGC 59.932 43.478 0.00 0.00 0.00 5.01
429 432 1.608590 AGACATTGTTTTGAGGGTGCG 59.391 47.619 0.00 0.00 0.00 5.34
430 433 0.673437 ACATTGTTTTGAGGGTGCGG 59.327 50.000 0.00 0.00 0.00 5.69
431 434 0.958091 CATTGTTTTGAGGGTGCGGA 59.042 50.000 0.00 0.00 0.00 5.54
452 456 1.472376 GCGGATCTTCTTCAGGGTGAG 60.472 57.143 0.00 0.00 0.00 3.51
503 507 1.238439 GCTTGTGCACTGCTTCCTTA 58.762 50.000 19.41 0.00 39.41 2.69
559 563 1.621814 GTGCTGTCTAGGTGGTGGTTA 59.378 52.381 0.00 0.00 0.00 2.85
572 576 2.301346 GGTGGTTAATGCTGCAGCTAT 58.699 47.619 36.61 26.86 42.66 2.97
586 590 7.868775 TGCTGCAGCTATAAGAAATTGATTAG 58.131 34.615 36.61 0.00 42.66 1.73
587 591 6.800892 GCTGCAGCTATAAGAAATTGATTAGC 59.199 38.462 31.33 0.00 38.21 3.09
611 625 7.908193 CGTAGCTAGATTTCTTCTTCTTCTC 57.092 40.000 0.00 0.00 35.79 2.87
624 643 8.713708 TCTTCTTCTTCTCCTTCTTCTTCTTA 57.286 34.615 0.00 0.00 0.00 2.10
633 652 8.622948 TCTCCTTCTTCTTCTTATTTTTGTCC 57.377 34.615 0.00 0.00 0.00 4.02
635 654 8.622948 TCCTTCTTCTTCTTATTTTTGTCCTC 57.377 34.615 0.00 0.00 0.00 3.71
665 684 4.629634 TGTGCATCTGTAATGTCTTTACGG 59.370 41.667 10.02 10.02 45.09 4.02
694 714 3.599730 TGTTGCAGAGACTGGATGTAG 57.400 47.619 0.00 0.00 30.73 2.74
702 722 6.098838 TGCAGAGACTGGATGTAGTTGATATT 59.901 38.462 0.00 0.00 31.21 1.28
786 806 8.821147 TGAATTTTCATTAGCATAATCATGGC 57.179 30.769 0.00 0.00 30.29 4.40
787 807 8.644216 TGAATTTTCATTAGCATAATCATGGCT 58.356 29.630 0.00 0.00 30.29 4.75
788 808 9.136952 GAATTTTCATTAGCATAATCATGGCTC 57.863 33.333 0.00 0.00 32.36 4.70
790 810 5.509832 TCATTAGCATAATCATGGCTCCT 57.490 39.130 0.00 0.00 32.36 3.69
791 811 5.494724 TCATTAGCATAATCATGGCTCCTC 58.505 41.667 0.00 0.00 32.36 3.71
792 812 2.875094 AGCATAATCATGGCTCCTCC 57.125 50.000 0.00 0.00 32.36 4.30
793 813 2.346529 AGCATAATCATGGCTCCTCCT 58.653 47.619 0.00 0.00 35.26 3.69
794 814 3.524826 AGCATAATCATGGCTCCTCCTA 58.475 45.455 0.00 0.00 35.26 2.94
795 815 3.518705 AGCATAATCATGGCTCCTCCTAG 59.481 47.826 0.00 0.00 35.26 3.02
796 816 3.517100 GCATAATCATGGCTCCTCCTAGA 59.483 47.826 0.00 0.00 35.26 2.43
797 817 4.019860 GCATAATCATGGCTCCTCCTAGAA 60.020 45.833 0.00 0.00 35.26 2.10
808 828 7.248976 TGGCTCCTCCTAGAATAGAATAATGA 58.751 38.462 0.00 0.00 42.77 2.57
810 830 7.254852 GCTCCTCCTAGAATAGAATAATGACG 58.745 42.308 0.00 0.00 42.77 4.35
842 862 4.636435 CCGAGCGTGGTGGGGTTT 62.636 66.667 0.00 0.00 0.00 3.27
843 863 3.353836 CGAGCGTGGTGGGGTTTG 61.354 66.667 0.00 0.00 0.00 2.93
844 864 2.112297 GAGCGTGGTGGGGTTTGA 59.888 61.111 0.00 0.00 0.00 2.69
845 865 1.966451 GAGCGTGGTGGGGTTTGAG 60.966 63.158 0.00 0.00 0.00 3.02
846 866 2.983592 GCGTGGTGGGGTTTGAGG 60.984 66.667 0.00 0.00 0.00 3.86
847 867 2.983592 CGTGGTGGGGTTTGAGGC 60.984 66.667 0.00 0.00 0.00 4.70
848 868 2.983592 GTGGTGGGGTTTGAGGCG 60.984 66.667 0.00 0.00 0.00 5.52
849 869 4.278513 TGGTGGGGTTTGAGGCGG 62.279 66.667 0.00 0.00 0.00 6.13
850 870 3.961414 GGTGGGGTTTGAGGCGGA 61.961 66.667 0.00 0.00 0.00 5.54
851 871 2.359975 GTGGGGTTTGAGGCGGAG 60.360 66.667 0.00 0.00 0.00 4.63
852 872 3.646715 TGGGGTTTGAGGCGGAGG 61.647 66.667 0.00 0.00 0.00 4.30
902 923 1.579964 GGCCACGTTACTTTTCCCCG 61.580 60.000 0.00 0.00 0.00 5.73
932 953 1.303643 GCCCAGTTCACCTCCCAAG 60.304 63.158 0.00 0.00 0.00 3.61
936 957 1.071471 AGTTCACCTCCCAAGCACG 59.929 57.895 0.00 0.00 0.00 5.34
962 989 1.269778 GCTGGAAAACACCCAAGAAGC 60.270 52.381 0.00 0.00 32.53 3.86
963 990 1.001378 CTGGAAAACACCCAAGAAGCG 60.001 52.381 0.00 0.00 32.53 4.68
964 991 0.313987 GGAAAACACCCAAGAAGCGG 59.686 55.000 0.00 0.00 0.00 5.52
965 992 1.314730 GAAAACACCCAAGAAGCGGA 58.685 50.000 0.00 0.00 0.00 5.54
966 993 1.679153 GAAAACACCCAAGAAGCGGAA 59.321 47.619 0.00 0.00 0.00 4.30
967 994 1.318576 AAACACCCAAGAAGCGGAAG 58.681 50.000 0.00 0.00 0.00 3.46
968 995 0.472471 AACACCCAAGAAGCGGAAGA 59.528 50.000 0.00 0.00 0.00 2.87
969 996 0.472471 ACACCCAAGAAGCGGAAGAA 59.528 50.000 0.00 0.00 0.00 2.52
970 997 1.160137 CACCCAAGAAGCGGAAGAAG 58.840 55.000 0.00 0.00 0.00 2.85
971 998 1.056660 ACCCAAGAAGCGGAAGAAGA 58.943 50.000 0.00 0.00 0.00 2.87
993 1038 0.541863 GGGGAGGAAGCAGAATCGAA 59.458 55.000 0.00 0.00 0.00 3.71
1199 1258 2.269241 CTTGCCTCCGGTCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
1320 1394 3.801997 CTCCCGGAGCAGCCCAAT 61.802 66.667 0.73 0.00 0.00 3.16
1528 1617 1.818674 GGGCAAAACAGATGGTACTGG 59.181 52.381 0.00 0.00 41.59 4.00
1530 1619 2.749621 GGCAAAACAGATGGTACTGGAG 59.250 50.000 0.00 0.00 41.59 3.86
1531 1620 2.162408 GCAAAACAGATGGTACTGGAGC 59.838 50.000 0.00 0.00 41.59 4.70
1532 1621 3.411446 CAAAACAGATGGTACTGGAGCA 58.589 45.455 0.00 0.00 41.59 4.26
1533 1622 3.788227 AAACAGATGGTACTGGAGCAA 57.212 42.857 0.00 0.00 41.59 3.91
1534 1623 3.340814 AACAGATGGTACTGGAGCAAG 57.659 47.619 0.00 0.00 41.59 4.01
1535 1624 2.540383 ACAGATGGTACTGGAGCAAGA 58.460 47.619 0.00 0.00 41.59 3.02
1591 1694 4.842574 TCTTGGATCGGATGATTGTTGAA 58.157 39.130 0.00 0.00 34.09 2.69
1732 1844 1.337354 TGATGTGCAATGCCAGCAAAG 60.337 47.619 11.10 0.00 44.64 2.77
1921 2049 6.643055 TAGGAACTCCACATTCAGTGCGAC 62.643 50.000 0.00 0.00 43.44 5.19
2020 2165 0.464554 GCTTGGTGGCCTCATACTCC 60.465 60.000 3.32 0.00 0.00 3.85
2112 2318 7.778185 ACATAATAACTAGCTACCCACTAGG 57.222 40.000 0.00 0.00 41.22 3.02
2192 2455 5.441718 AGTGGGTTATATGCCATATCCAG 57.558 43.478 0.00 0.00 0.00 3.86
2195 2458 5.648092 GTGGGTTATATGCCATATCCAGAAC 59.352 44.000 0.00 0.41 0.00 3.01
2201 2464 6.692849 ATATGCCATATCCAGAACTGAGAA 57.307 37.500 3.19 0.00 0.00 2.87
2202 2465 4.842531 TGCCATATCCAGAACTGAGAAA 57.157 40.909 3.19 0.00 0.00 2.52
2239 2547 1.673168 AGATGAGAAATTCGGCCTGC 58.327 50.000 0.00 0.00 0.00 4.85
2310 2621 3.574396 TGCTCAGCATCCCTACTGTATAC 59.426 47.826 0.00 0.00 35.37 1.47
2360 2679 5.412904 GGGCCTCTAGGAATTATTTCATTCG 59.587 44.000 0.84 0.00 37.39 3.34
2362 2692 6.486993 GGCCTCTAGGAATTATTTCATTCGTT 59.513 38.462 0.00 0.00 37.39 3.85
2636 3040 4.582701 TGTTCTTACCATTGTTTGCCTG 57.417 40.909 0.00 0.00 0.00 4.85
2641 3045 1.506025 ACCATTGTTTGCCTGGGTTT 58.494 45.000 0.00 0.00 34.21 3.27
2789 3270 5.350914 CAGCACTGGAGTTAGATCTTTTCAG 59.649 44.000 0.00 4.51 0.00 3.02
2845 3328 3.820467 TGGTTTGAGATTTTGAGCATCGT 59.180 39.130 0.00 0.00 38.61 3.73
2853 3336 6.312918 TGAGATTTTGAGCATCGTAACCTTAC 59.687 38.462 0.00 0.00 38.61 2.34
2868 3351 9.195411 TCGTAACCTTACTTTGTTACTTATGTG 57.805 33.333 9.91 0.00 42.84 3.21
2945 3719 2.854522 GGTGAGAAACCCATCCACG 58.145 57.895 0.00 0.00 44.02 4.94
2949 3723 1.972075 TGAGAAACCCATCCACGTGTA 59.028 47.619 15.65 0.00 0.00 2.90
3050 3824 2.058798 CATGTCCGACCGAAATATCCG 58.941 52.381 0.00 0.00 0.00 4.18
3079 3853 0.175989 CCAAGTCCTACCCTCTTCGC 59.824 60.000 0.00 0.00 0.00 4.70
3148 3925 0.244450 AGCATTGCGGTGTTTCCATG 59.756 50.000 2.38 0.00 35.57 3.66
3169 3946 1.146041 TGCCAACAGACGAGCAAGT 59.854 52.632 0.00 0.00 30.97 3.16
3190 3967 7.653311 GCAAGTTAATTGTGTGGAAATCTTTCT 59.347 33.333 2.93 0.00 41.29 2.52
3213 3990 1.747774 GGTTGCCTGTGGTTGCATT 59.252 52.632 0.00 0.00 37.33 3.56
3239 4016 3.503748 GCACTCCAAGATAGCAAGTTGTT 59.496 43.478 4.48 0.30 0.00 2.83
3241 4018 5.455392 CACTCCAAGATAGCAAGTTGTTTG 58.545 41.667 4.48 2.75 39.88 2.93
3242 4019 5.009010 CACTCCAAGATAGCAAGTTGTTTGT 59.991 40.000 4.48 0.00 39.08 2.83
3243 4020 5.239525 ACTCCAAGATAGCAAGTTGTTTGTC 59.760 40.000 4.48 1.94 39.08 3.18
3244 4021 4.518970 TCCAAGATAGCAAGTTGTTTGTCC 59.481 41.667 4.48 0.00 39.08 4.02
3245 4022 4.321230 CCAAGATAGCAAGTTGTTTGTCCC 60.321 45.833 4.48 0.00 39.08 4.46
3246 4023 4.098914 AGATAGCAAGTTGTTTGTCCCA 57.901 40.909 4.48 0.00 39.08 4.37
3247 4024 3.821033 AGATAGCAAGTTGTTTGTCCCAC 59.179 43.478 4.48 0.00 39.08 4.61
3248 4025 2.143876 AGCAAGTTGTTTGTCCCACT 57.856 45.000 4.48 0.00 39.08 4.00
3249 4026 2.024414 AGCAAGTTGTTTGTCCCACTC 58.976 47.619 4.48 0.00 39.08 3.51
3250 4027 1.268539 GCAAGTTGTTTGTCCCACTCG 60.269 52.381 4.48 0.00 39.08 4.18
3251 4028 1.333619 CAAGTTGTTTGTCCCACTCGG 59.666 52.381 0.00 0.00 31.92 4.63
3252 4029 0.818040 AGTTGTTTGTCCCACTCGGC 60.818 55.000 0.00 0.00 0.00 5.54
3253 4030 1.098712 GTTGTTTGTCCCACTCGGCA 61.099 55.000 0.00 0.00 0.00 5.69
3254 4031 0.179004 TTGTTTGTCCCACTCGGCAT 60.179 50.000 0.00 0.00 0.00 4.40
3255 4032 0.605319 TGTTTGTCCCACTCGGCATC 60.605 55.000 0.00 0.00 0.00 3.91
3256 4033 1.375396 TTTGTCCCACTCGGCATCG 60.375 57.895 0.00 0.00 37.82 3.84
3257 4034 1.822114 TTTGTCCCACTCGGCATCGA 61.822 55.000 0.00 0.00 43.86 3.59
3265 4042 3.197614 TCGGCATCGAGTCCTCAC 58.802 61.111 0.00 0.00 40.88 3.51
3382 4184 3.644719 AGGCCTCCTGATGCAGAG 58.355 61.111 0.00 0.00 32.44 3.35
3447 4249 2.576191 TGTTCTTATAGGCAAGCCAGGT 59.424 45.455 14.40 1.11 38.92 4.00
3451 4253 5.036117 TCTTATAGGCAAGCCAGGTAAAG 57.964 43.478 14.40 9.10 38.92 1.85
3466 4268 2.939103 GGTAAAGAGCGTGCATCTCAAT 59.061 45.455 17.56 10.13 33.15 2.57
3476 4278 1.647629 CATCTCAATGGCGCTCTGC 59.352 57.895 7.64 0.00 45.38 4.26
3546 4348 0.317436 CTCGCGTAGGCAGATCTCAC 60.317 60.000 5.77 0.00 39.92 3.51
3547 4349 1.029947 TCGCGTAGGCAGATCTCACA 61.030 55.000 5.77 0.00 39.92 3.58
3548 4350 0.031314 CGCGTAGGCAGATCTCACAT 59.969 55.000 8.32 0.00 39.92 3.21
3549 4351 1.536922 CGCGTAGGCAGATCTCACATT 60.537 52.381 8.32 0.00 39.92 2.71
3550 4352 1.863454 GCGTAGGCAGATCTCACATTG 59.137 52.381 1.75 0.00 39.62 2.82
3565 4367 0.683828 CATTGCCATGTACTGCCCCA 60.684 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.770162 TCTCATCCAATCTAGCAATCTACGA 59.230 40.000 0.00 0.00 0.00 3.43
55 56 6.018589 TCTCATCCAATCTAGCAATCTACG 57.981 41.667 0.00 0.00 0.00 3.51
124 125 3.097728 CGAAGCTTCGCGTCACGT 61.098 61.111 33.46 0.00 44.26 4.49
160 161 7.864108 TGGAAATCGAAATATCAACATGTCT 57.136 32.000 0.00 0.00 0.00 3.41
168 169 7.053498 TCTTCACCATGGAAATCGAAATATCA 58.947 34.615 21.47 0.00 0.00 2.15
170 171 9.224267 CTATCTTCACCATGGAAATCGAAATAT 57.776 33.333 21.47 10.61 0.00 1.28
197 198 3.554692 GCATGACGTTCTCCGCCG 61.555 66.667 0.00 0.00 41.42 6.46
220 221 3.381908 CGTCATTACTAGGCCTCAGACTT 59.618 47.826 9.68 0.00 0.00 3.01
223 224 2.092049 TCCGTCATTACTAGGCCTCAGA 60.092 50.000 9.68 0.00 0.00 3.27
225 226 2.447408 TCCGTCATTACTAGGCCTCA 57.553 50.000 9.68 0.00 0.00 3.86
226 227 2.095161 CGATCCGTCATTACTAGGCCTC 60.095 54.545 9.68 0.00 0.00 4.70
228 229 1.884579 TCGATCCGTCATTACTAGGCC 59.115 52.381 0.00 0.00 0.00 5.19
230 231 4.066490 AGACTCGATCCGTCATTACTAGG 58.934 47.826 11.17 0.00 33.89 3.02
232 233 5.670149 GAAGACTCGATCCGTCATTACTA 57.330 43.478 11.17 0.00 33.89 1.82
233 234 4.555348 GAAGACTCGATCCGTCATTACT 57.445 45.455 11.17 0.00 33.89 2.24
272 275 2.455674 TGAGTCACGAATCACCAAGG 57.544 50.000 0.00 0.00 29.72 3.61
310 313 4.892965 TTGTGCTGCCGCCCAACT 62.893 61.111 0.00 0.00 28.35 3.16
311 314 4.347453 CTTGTGCTGCCGCCCAAC 62.347 66.667 0.00 0.00 30.34 3.77
331 334 2.037251 TGAAAGCTAAGACTCCGCACTT 59.963 45.455 0.00 0.00 0.00 3.16
335 338 2.003301 CCTTGAAAGCTAAGACTCCGC 58.997 52.381 0.00 0.00 0.00 5.54
337 340 4.273148 TCACCTTGAAAGCTAAGACTCC 57.727 45.455 0.00 0.00 0.00 3.85
411 414 0.673437 CCGCACCCTCAAAACAATGT 59.327 50.000 0.00 0.00 0.00 2.71
424 427 2.579684 AAGAAGATCCGCTCCGCACC 62.580 60.000 0.00 0.00 0.00 5.01
426 429 1.141881 GAAGAAGATCCGCTCCGCA 59.858 57.895 0.00 0.00 0.00 5.69
427 430 0.873743 CTGAAGAAGATCCGCTCCGC 60.874 60.000 0.00 0.00 0.00 5.54
428 431 0.249238 CCTGAAGAAGATCCGCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
429 432 0.105778 CCCTGAAGAAGATCCGCTCC 59.894 60.000 0.00 0.00 0.00 4.70
430 433 0.827368 ACCCTGAAGAAGATCCGCTC 59.173 55.000 0.00 0.00 0.00 5.03
431 434 0.539051 CACCCTGAAGAAGATCCGCT 59.461 55.000 0.00 0.00 0.00 5.52
442 445 5.843019 AGATTTTAGGTTCTCACCCTGAA 57.157 39.130 0.00 0.00 45.63 3.02
452 456 6.161381 TCGCCCGATTATAGATTTTAGGTTC 58.839 40.000 0.00 0.00 0.00 3.62
503 507 2.270352 TCAAAAGCGACACCTCCAAT 57.730 45.000 0.00 0.00 0.00 3.16
511 515 5.890334 AGTTCAAATTCTTCAAAAGCGACA 58.110 33.333 0.00 0.00 0.00 4.35
559 563 6.704289 TCAATTTCTTATAGCTGCAGCATT 57.296 33.333 38.24 26.65 45.16 3.56
572 576 9.982651 AATCTAGCTACGCTAATCAATTTCTTA 57.017 29.630 0.00 0.00 40.82 2.10
586 590 6.270064 AGAAGAAGAAGAAATCTAGCTACGC 58.730 40.000 0.00 0.00 37.42 4.42
587 591 6.915843 GGAGAAGAAGAAGAAATCTAGCTACG 59.084 42.308 0.00 0.00 37.42 3.51
593 597 9.320295 AGAAGAAGGAGAAGAAGAAGAAATCTA 57.680 33.333 0.00 0.00 37.42 1.98
594 598 8.206126 AGAAGAAGGAGAAGAAGAAGAAATCT 57.794 34.615 0.00 0.00 41.32 2.40
598 602 7.610580 AGAAGAAGAAGGAGAAGAAGAAGAA 57.389 36.000 0.00 0.00 0.00 2.52
600 609 9.942850 AATAAGAAGAAGAAGGAGAAGAAGAAG 57.057 33.333 0.00 0.00 0.00 2.85
611 625 8.510505 CAGAGGACAAAAATAAGAAGAAGAAGG 58.489 37.037 0.00 0.00 0.00 3.46
624 643 2.624838 CACACAGCCAGAGGACAAAAAT 59.375 45.455 0.00 0.00 0.00 1.82
633 652 0.321387 ACAGATGCACACAGCCAGAG 60.321 55.000 0.00 0.00 44.83 3.35
635 654 1.812235 TTACAGATGCACACAGCCAG 58.188 50.000 0.00 0.00 44.83 4.85
684 703 7.851228 TCACAGAAATATCAACTACATCCAGT 58.149 34.615 0.00 0.00 0.00 4.00
761 781 8.644216 AGCCATGATTATGCTAATGAAAATTCA 58.356 29.630 0.00 0.00 35.89 2.57
763 783 8.092687 GGAGCCATGATTATGCTAATGAAAATT 58.907 33.333 0.00 0.00 32.79 1.82
771 791 3.912528 AGGAGGAGCCATGATTATGCTAA 59.087 43.478 0.00 0.00 40.02 3.09
773 793 2.346529 AGGAGGAGCCATGATTATGCT 58.653 47.619 0.00 0.00 40.02 3.79
777 797 6.805150 TCTATTCTAGGAGGAGCCATGATTA 58.195 40.000 0.00 0.00 40.02 1.75
782 802 7.903481 TCATTATTCTATTCTAGGAGGAGCCAT 59.097 37.037 0.00 0.00 40.02 4.40
786 806 8.568676 TCGTCATTATTCTATTCTAGGAGGAG 57.431 38.462 0.00 0.00 0.00 3.69
787 807 8.961634 CATCGTCATTATTCTATTCTAGGAGGA 58.038 37.037 0.00 0.00 0.00 3.71
788 808 7.704472 GCATCGTCATTATTCTATTCTAGGAGG 59.296 40.741 0.00 0.00 0.00 4.30
790 810 8.122472 TGCATCGTCATTATTCTATTCTAGGA 57.878 34.615 0.00 0.00 0.00 2.94
791 811 8.939201 ATGCATCGTCATTATTCTATTCTAGG 57.061 34.615 0.00 0.00 0.00 3.02
793 813 9.076596 CGAATGCATCGTCATTATTCTATTCTA 57.923 33.333 0.00 0.00 46.52 2.10
794 814 7.957615 CGAATGCATCGTCATTATTCTATTCT 58.042 34.615 0.00 0.00 46.52 2.40
825 845 4.636435 AAACCCCACCACGCTCGG 62.636 66.667 0.00 0.00 0.00 4.63
826 846 3.353836 CAAACCCCACCACGCTCG 61.354 66.667 0.00 0.00 0.00 5.03
827 847 1.966451 CTCAAACCCCACCACGCTC 60.966 63.158 0.00 0.00 0.00 5.03
828 848 2.113139 CTCAAACCCCACCACGCT 59.887 61.111 0.00 0.00 0.00 5.07
829 849 2.983592 CCTCAAACCCCACCACGC 60.984 66.667 0.00 0.00 0.00 5.34
830 850 2.983592 GCCTCAAACCCCACCACG 60.984 66.667 0.00 0.00 0.00 4.94
831 851 2.983592 CGCCTCAAACCCCACCAC 60.984 66.667 0.00 0.00 0.00 4.16
832 852 4.278513 CCGCCTCAAACCCCACCA 62.279 66.667 0.00 0.00 0.00 4.17
833 853 3.920093 CTCCGCCTCAAACCCCACC 62.920 68.421 0.00 0.00 0.00 4.61
834 854 2.359975 CTCCGCCTCAAACCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
835 855 3.646715 CCTCCGCCTCAAACCCCA 61.647 66.667 0.00 0.00 0.00 4.96
838 858 4.388499 TCGCCTCCGCCTCAAACC 62.388 66.667 0.00 0.00 0.00 3.27
839 859 2.815647 CTCGCCTCCGCCTCAAAC 60.816 66.667 0.00 0.00 0.00 2.93
840 860 4.082523 CCTCGCCTCCGCCTCAAA 62.083 66.667 0.00 0.00 0.00 2.69
847 867 3.234630 TTCAACCACCTCGCCTCCG 62.235 63.158 0.00 0.00 0.00 4.63
848 868 1.376037 CTTCAACCACCTCGCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
849 869 0.034896 TTCTTCAACCACCTCGCCTC 59.965 55.000 0.00 0.00 0.00 4.70
850 870 0.472471 TTTCTTCAACCACCTCGCCT 59.528 50.000 0.00 0.00 0.00 5.52
851 871 0.875059 CTTTCTTCAACCACCTCGCC 59.125 55.000 0.00 0.00 0.00 5.54
852 872 0.875059 CCTTTCTTCAACCACCTCGC 59.125 55.000 0.00 0.00 0.00 5.03
853 873 0.875059 GCCTTTCTTCAACCACCTCG 59.125 55.000 0.00 0.00 0.00 4.63
854 874 0.875059 CGCCTTTCTTCAACCACCTC 59.125 55.000 0.00 0.00 0.00 3.85
855 875 0.537371 CCGCCTTTCTTCAACCACCT 60.537 55.000 0.00 0.00 0.00 4.00
902 923 4.748144 CTGGGCTGGGCAGGGAAC 62.748 72.222 0.00 0.00 0.00 3.62
936 957 3.680786 GTGTTTTCCAGCCGCCCC 61.681 66.667 0.00 0.00 0.00 5.80
962 989 0.617820 TCCTCCCCCTTCTTCTTCCG 60.618 60.000 0.00 0.00 0.00 4.30
963 990 1.562008 CTTCCTCCCCCTTCTTCTTCC 59.438 57.143 0.00 0.00 0.00 3.46
964 991 1.065053 GCTTCCTCCCCCTTCTTCTTC 60.065 57.143 0.00 0.00 0.00 2.87
965 992 0.995803 GCTTCCTCCCCCTTCTTCTT 59.004 55.000 0.00 0.00 0.00 2.52
966 993 0.178861 TGCTTCCTCCCCCTTCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
967 994 0.254462 CTGCTTCCTCCCCCTTCTTC 59.746 60.000 0.00 0.00 0.00 2.87
968 995 0.178861 TCTGCTTCCTCCCCCTTCTT 60.179 55.000 0.00 0.00 0.00 2.52
969 996 0.178861 TTCTGCTTCCTCCCCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
970 997 0.922626 ATTCTGCTTCCTCCCCCTTC 59.077 55.000 0.00 0.00 0.00 3.46
971 998 0.922626 GATTCTGCTTCCTCCCCCTT 59.077 55.000 0.00 0.00 0.00 3.95
993 1038 0.614415 TGGATTCCGCCATTGCCTTT 60.614 50.000 0.00 0.00 31.66 3.11
1125 1172 4.952102 TTGGGGTTGGGCTTGGGC 62.952 66.667 0.00 0.00 37.82 5.36
1126 1173 2.604382 CTTGGGGTTGGGCTTGGG 60.604 66.667 0.00 0.00 0.00 4.12
1127 1174 3.313524 GCTTGGGGTTGGGCTTGG 61.314 66.667 0.00 0.00 0.00 3.61
1128 1175 3.313524 GGCTTGGGGTTGGGCTTG 61.314 66.667 0.00 0.00 0.00 4.01
1129 1176 4.638895 GGGCTTGGGGTTGGGCTT 62.639 66.667 0.00 0.00 0.00 4.35
1199 1258 7.394923 AGTCATATATACGGGAGAAAAGGAGAG 59.605 40.741 0.00 0.00 0.00 3.20
1550 1646 1.131126 GAACCACATTGCCTGACATCG 59.869 52.381 0.00 0.00 0.00 3.84
1556 1657 1.619654 TCCAAGAACCACATTGCCTG 58.380 50.000 0.00 0.00 0.00 4.85
1921 2049 9.454585 CCACATGAAAACAAGTTATATATGCAG 57.545 33.333 0.00 0.00 0.00 4.41
2020 2165 0.363512 CGACAGACGAACGCATGAAG 59.636 55.000 0.00 0.00 45.77 3.02
2106 2312 8.665685 GTTTGATACTAAACAATGACCCTAGTG 58.334 37.037 0.00 0.00 39.67 2.74
2192 2455 6.734104 ATAAGCAGACACATTTCTCAGTTC 57.266 37.500 0.00 0.00 0.00 3.01
2195 2458 6.732531 TGAATAAGCAGACACATTTCTCAG 57.267 37.500 0.00 0.00 0.00 3.35
2201 2464 8.427276 TCTCATCTATGAATAAGCAGACACATT 58.573 33.333 0.00 0.00 36.18 2.71
2202 2465 7.960262 TCTCATCTATGAATAAGCAGACACAT 58.040 34.615 0.00 0.00 36.18 3.21
2310 2621 2.092538 AGATCTGGCTGGAATGAAGGTG 60.093 50.000 0.00 0.00 0.00 4.00
2360 2679 1.963515 ACTGGACAATCAAAGGCCAAC 59.036 47.619 5.01 0.00 0.00 3.77
2362 2692 2.380064 AACTGGACAATCAAAGGCCA 57.620 45.000 5.01 0.00 0.00 5.36
2469 2808 7.013559 CCTGCATCATTTACATAACCAATGAGA 59.986 37.037 0.00 0.00 39.64 3.27
2726 3181 4.311606 TGTTCATAACTCGTAAGCAAGCA 58.688 39.130 0.00 0.00 37.18 3.91
2800 3281 1.320344 GGGAAATGGGAGAAACGGCC 61.320 60.000 0.00 0.00 0.00 6.13
3079 3853 1.664151 GGCCGTTCTACAAAGGATTCG 59.336 52.381 0.00 0.00 33.12 3.34
3169 3946 8.286800 CGTACAGAAAGATTTCCACACAATTAA 58.713 33.333 1.73 0.00 37.92 1.40
3190 3967 0.816018 CAACCACAGGCAACCGTACA 60.816 55.000 0.00 0.00 37.17 2.90
3213 3990 3.008375 ACTTGCTATCTTGGAGTGCTTCA 59.992 43.478 0.00 0.00 0.00 3.02
3239 4016 2.264480 CGATGCCGAGTGGGACAA 59.736 61.111 0.00 0.00 39.03 3.18
3248 4025 2.761195 CGTGAGGACTCGATGCCGA 61.761 63.158 0.00 0.00 43.35 5.54
3249 4026 2.278206 CGTGAGGACTCGATGCCG 60.278 66.667 0.00 0.00 35.44 5.69
3250 4027 1.226717 GACGTGAGGACTCGATGCC 60.227 63.158 0.00 0.00 36.91 4.40
3251 4028 1.226717 GGACGTGAGGACTCGATGC 60.227 63.158 0.00 0.00 36.91 3.91
3252 4029 1.433879 GGGACGTGAGGACTCGATG 59.566 63.158 0.00 0.00 36.91 3.84
3253 4030 1.753463 GGGGACGTGAGGACTCGAT 60.753 63.158 0.00 0.00 36.91 3.59
3254 4031 2.360852 GGGGACGTGAGGACTCGA 60.361 66.667 0.00 0.00 36.91 4.04
3255 4032 2.214181 CTTGGGGACGTGAGGACTCG 62.214 65.000 0.00 0.00 38.66 4.18
3256 4033 1.592223 CTTGGGGACGTGAGGACTC 59.408 63.158 0.00 0.00 0.00 3.36
3257 4034 2.584391 GCTTGGGGACGTGAGGACT 61.584 63.158 0.00 0.00 0.00 3.85
3258 4035 2.047179 GCTTGGGGACGTGAGGAC 60.047 66.667 0.00 0.00 0.00 3.85
3259 4036 2.111999 CTTGCTTGGGGACGTGAGGA 62.112 60.000 0.00 0.00 0.00 3.71
3260 4037 1.672356 CTTGCTTGGGGACGTGAGG 60.672 63.158 0.00 0.00 0.00 3.86
3261 4038 0.250295 TTCTTGCTTGGGGACGTGAG 60.250 55.000 0.00 0.00 0.00 3.51
3262 4039 0.250295 CTTCTTGCTTGGGGACGTGA 60.250 55.000 0.00 0.00 0.00 4.35
3263 4040 1.856265 GCTTCTTGCTTGGGGACGTG 61.856 60.000 0.00 0.00 38.95 4.49
3264 4041 1.600916 GCTTCTTGCTTGGGGACGT 60.601 57.895 0.00 0.00 38.95 4.34
3265 4042 1.600636 TGCTTCTTGCTTGGGGACG 60.601 57.895 0.00 0.00 43.37 4.79
3337 4139 0.106769 TGTTGCCAGTTGCCAGAGAA 60.107 50.000 0.00 0.00 40.16 2.87
3404 4206 0.184933 TGTTGGACCTTGGTCCTTGG 59.815 55.000 31.56 0.00 43.68 3.61
3405 4207 2.162681 GATGTTGGACCTTGGTCCTTG 58.837 52.381 31.56 0.00 43.68 3.61
3406 4208 2.065799 AGATGTTGGACCTTGGTCCTT 58.934 47.619 31.56 17.87 43.68 3.36
3407 4209 1.352352 CAGATGTTGGACCTTGGTCCT 59.648 52.381 31.56 16.88 43.68 3.85
3408 4210 1.073923 ACAGATGTTGGACCTTGGTCC 59.926 52.381 27.21 27.21 43.60 4.46
3409 4211 2.568623 ACAGATGTTGGACCTTGGTC 57.431 50.000 11.13 11.13 0.00 4.02
3410 4212 2.443255 AGAACAGATGTTGGACCTTGGT 59.557 45.455 2.31 0.00 38.56 3.67
3447 4249 2.938451 CCATTGAGATGCACGCTCTTTA 59.062 45.455 16.65 5.76 33.57 1.85
3451 4253 1.354506 GCCATTGAGATGCACGCTC 59.645 57.895 10.65 10.65 31.67 5.03
3495 4297 3.893200 TGGACGAGAAAAAGACCTGTCTA 59.107 43.478 0.00 0.00 39.39 2.59
3498 4300 3.553828 TTGGACGAGAAAAAGACCTGT 57.446 42.857 0.00 0.00 0.00 4.00
3511 4313 0.099968 CGAGCCGATACTTTGGACGA 59.900 55.000 0.00 0.00 32.88 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.