Multiple sequence alignment - TraesCS5D01G514100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G514100 chr5D 100.000 3410 0 0 1 3410 537762027 537765436 0.000000e+00 6298.0
1 TraesCS5D01G514100 chr5D 88.108 185 13 4 2544 2720 399146612 399146795 9.590000e-51 211.0
2 TraesCS5D01G514100 chr5B 95.194 1602 68 5 861 2459 678514040 678515635 0.000000e+00 2523.0
3 TraesCS5D01G514100 chr5B 86.694 729 67 14 1 709 678513095 678513813 0.000000e+00 782.0
4 TraesCS5D01G514100 chr5B 86.940 536 53 13 1867 2395 678521697 678522222 1.360000e-163 586.0
5 TraesCS5D01G514100 chr5B 92.166 217 15 2 3073 3288 678515909 678516124 4.280000e-79 305.0
6 TraesCS5D01G514100 chr5B 91.358 162 8 1 2563 2718 490757412 490757573 2.060000e-52 217.0
7 TraesCS5D01G514100 chr5B 88.172 186 11 8 1486 1662 678518683 678518866 9.590000e-51 211.0
8 TraesCS5D01G514100 chr5B 92.913 127 9 0 2438 2564 678522229 678522355 5.810000e-43 185.0
9 TraesCS5D01G514100 chr5B 91.597 119 5 2 3284 3402 678516174 678516287 3.520000e-35 159.0
10 TraesCS5D01G514100 chr5B 90.598 117 11 0 1703 1819 678518949 678519065 4.560000e-34 156.0
11 TraesCS5D01G514100 chr5B 98.780 82 1 0 778 859 678513852 678513933 2.740000e-31 147.0
12 TraesCS5D01G514100 chr5B 85.926 135 11 6 2803 2931 710624858 710624990 1.650000e-28 137.0
13 TraesCS5D01G514100 chr5B 87.826 115 7 5 2818 2931 336038153 336038261 9.930000e-26 128.0
14 TraesCS5D01G514100 chr5B 85.714 126 10 5 2807 2931 445185242 445185360 3.570000e-25 126.0
15 TraesCS5D01G514100 chr5B 97.619 42 1 0 727 768 678513744 678513785 4.720000e-09 73.1
16 TraesCS5D01G514100 chr4A 89.487 1636 118 25 837 2459 631964352 631965946 0.000000e+00 2019.0
17 TraesCS5D01G514100 chr4A 94.517 693 26 4 1 691 631963672 631964354 0.000000e+00 1059.0
18 TraesCS5D01G514100 chr4A 79.614 363 28 15 2931 3292 631965984 631966301 5.730000e-53 219.0
19 TraesCS5D01G514100 chr4A 89.381 113 11 1 601 712 470097326 470097438 1.280000e-29 141.0
20 TraesCS5D01G514100 chr4A 85.926 135 11 6 2803 2931 604084510 604084378 1.650000e-28 137.0
21 TraesCS5D01G514100 chr6B 93.440 686 31 11 9 691 59405899 59406573 0.000000e+00 1005.0
22 TraesCS5D01G514100 chr6B 88.889 171 13 3 2556 2720 120226302 120226132 4.460000e-49 206.0
23 TraesCS5D01G514100 chr6B 94.531 128 7 0 837 964 59406571 59406698 7.460000e-47 198.0
24 TraesCS5D01G514100 chr6B 86.400 125 9 6 2808 2931 617675282 617675165 2.760000e-26 130.0
25 TraesCS5D01G514100 chr2B 90.854 164 9 1 2563 2720 66994644 66994807 7.410000e-52 215.0
26 TraesCS5D01G514100 chr2B 82.667 150 19 5 1469 1615 543312005 543311860 3.570000e-25 126.0
27 TraesCS5D01G514100 chr7D 90.361 166 10 3 2561 2720 296507846 296507681 2.670000e-51 213.0
28 TraesCS5D01G514100 chr7D 81.595 163 22 6 1466 1625 416529447 416529604 9.930000e-26 128.0
29 TraesCS5D01G514100 chr3D 87.701 187 16 2 2545 2725 6667259 6667444 9.590000e-51 211.0
30 TraesCS5D01G514100 chr3D 89.535 172 11 4 2554 2718 612268620 612268449 9.590000e-51 211.0
31 TraesCS5D01G514100 chr3D 86.400 125 9 6 2808 2931 54216468 54216351 2.760000e-26 130.0
32 TraesCS5D01G514100 chr3D 85.600 125 10 4 2808 2931 94848838 94848721 1.280000e-24 124.0
33 TraesCS5D01G514100 chr6D 89.080 174 12 2 2558 2725 21052136 21051964 3.450000e-50 209.0
34 TraesCS5D01G514100 chr4B 88.636 176 12 5 2563 2732 362845606 362845779 1.240000e-49 207.0
35 TraesCS5D01G514100 chr4B 89.189 111 12 0 604 714 149725145 149725035 4.590000e-29 139.0
36 TraesCS5D01G514100 chr3A 89.634 164 11 2 2561 2718 596770805 596770968 1.600000e-48 204.0
37 TraesCS5D01G514100 chr4D 88.623 167 13 1 2558 2718 334164557 334164391 7.460000e-47 198.0
38 TraesCS5D01G514100 chr4D 90.991 111 10 0 604 714 105932918 105932808 2.120000e-32 150.0
39 TraesCS5D01G514100 chr7B 87.429 175 15 4 2557 2725 677107586 677107413 9.660000e-46 195.0
40 TraesCS5D01G514100 chr7B 82.209 163 21 6 1466 1625 501962339 501962496 2.130000e-27 134.0
41 TraesCS5D01G514100 chr7B 81.437 167 23 6 1462 1625 13776758 13776919 2.760000e-26 130.0
42 TraesCS5D01G514100 chr7B 85.496 131 10 7 2801 2930 29591308 29591186 9.930000e-26 128.0
43 TraesCS5D01G514100 chr1B 87.356 174 16 2 2552 2719 647530513 647530686 9.660000e-46 195.0
44 TraesCS5D01G514100 chr1B 82.209 163 20 7 1466 1625 570176841 570176997 7.680000e-27 132.0
45 TraesCS5D01G514100 chr5A 88.095 168 13 2 2558 2718 671186744 671186911 3.470000e-45 193.0
46 TraesCS5D01G514100 chr5A 82.209 163 21 6 1466 1625 348175806 348175963 2.130000e-27 134.0
47 TraesCS5D01G514100 chr1D 87.302 126 10 4 2807 2931 307235407 307235527 4.590000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G514100 chr5D 537762027 537765436 3409 False 6298.00 6298 100.000000 1 3410 1 chr5D.!!$F2 3409
1 TraesCS5D01G514100 chr5B 678513095 678522355 9260 False 512.71 2523 92.067300 1 3402 10 chr5B.!!$F5 3401
2 TraesCS5D01G514100 chr4A 631963672 631966301 2629 False 1099.00 2019 87.872667 1 3292 3 chr4A.!!$F2 3291
3 TraesCS5D01G514100 chr6B 59405899 59406698 799 False 601.50 1005 93.985500 9 964 2 chr6B.!!$F1 955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 136 1.303643 GGGGAGGTTCTGGCTTGTG 60.304 63.158 0.00 0.0 0.00 3.33 F
1205 1341 0.171903 GCATCAATCTTGCTTGCCGT 59.828 50.000 6.47 0.0 37.14 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2048 0.105709 TAGGTCTGCCATCCGATCCA 60.106 55.0 0.0 0.0 37.19 3.41 R
2643 2787 0.593128 ACGGAGCAAAATGAGTGCAC 59.407 50.0 9.4 9.4 44.74 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.811431 TCATGCCACTTTTGTAGGAACG 59.189 45.455 0.00 0.00 0.00 3.95
131 135 2.895424 CGGGGAGGTTCTGGCTTGT 61.895 63.158 0.00 0.00 0.00 3.16
132 136 1.303643 GGGGAGGTTCTGGCTTGTG 60.304 63.158 0.00 0.00 0.00 3.33
133 137 1.303643 GGGAGGTTCTGGCTTGTGG 60.304 63.158 0.00 0.00 0.00 4.17
134 138 1.973812 GGAGGTTCTGGCTTGTGGC 60.974 63.158 0.00 0.00 40.90 5.01
179 183 6.801539 TTAGATTTGAACACTAGCCTGTTG 57.198 37.500 3.62 0.00 34.40 3.33
346 351 3.057946 GCTTGGCCTGCTGCTATAAATAC 60.058 47.826 3.32 0.00 40.92 1.89
440 465 1.605753 ACCGACTCTTTTGGCTTTCC 58.394 50.000 0.00 0.00 30.29 3.13
457 482 5.692654 GGCTTTCCGCAAGTGTTTTTATTTA 59.307 36.000 0.00 0.00 41.67 1.40
599 626 8.491045 TGGGTGTGAATAATATAGTGAGATGA 57.509 34.615 0.00 0.00 0.00 2.92
652 679 8.520351 AGTACCAAAGTTCAGCCATTAAAATAC 58.480 33.333 0.00 0.00 0.00 1.89
691 718 6.053632 TGATTTCAGAGCCAAGAGAATGTA 57.946 37.500 0.00 0.00 0.00 2.29
698 725 4.530161 AGAGCCAAGAGAATGTAGACAAGT 59.470 41.667 0.00 0.00 0.00 3.16
699 726 4.826556 AGCCAAGAGAATGTAGACAAGTC 58.173 43.478 0.00 0.00 0.00 3.01
709 736 3.930336 TGTAGACAAGTCTTCAGCATGG 58.070 45.455 8.17 0.00 40.93 3.66
711 738 1.701847 AGACAAGTCTTCAGCATGGGT 59.298 47.619 0.00 0.00 36.31 4.51
714 741 3.614092 ACAAGTCTTCAGCATGGGTATG 58.386 45.455 0.00 0.00 36.16 2.39
715 742 2.947652 CAAGTCTTCAGCATGGGTATGG 59.052 50.000 0.00 0.00 36.16 2.74
717 744 2.846206 AGTCTTCAGCATGGGTATGGAA 59.154 45.455 0.00 0.00 36.16 3.53
719 746 3.567164 GTCTTCAGCATGGGTATGGAATG 59.433 47.826 0.00 0.00 36.16 2.67
721 748 4.411869 TCTTCAGCATGGGTATGGAATGTA 59.588 41.667 0.00 0.00 36.16 2.29
722 749 4.356405 TCAGCATGGGTATGGAATGTAG 57.644 45.455 0.00 0.00 36.16 2.74
723 750 3.973305 TCAGCATGGGTATGGAATGTAGA 59.027 43.478 0.00 0.00 36.16 2.59
724 751 4.067896 CAGCATGGGTATGGAATGTAGAC 58.932 47.826 0.00 0.00 34.79 2.59
725 752 3.716353 AGCATGGGTATGGAATGTAGACA 59.284 43.478 0.00 0.00 34.79 3.41
726 753 4.165950 AGCATGGGTATGGAATGTAGACAA 59.834 41.667 0.00 0.00 34.79 3.18
727 754 4.516698 GCATGGGTATGGAATGTAGACAAG 59.483 45.833 0.00 0.00 34.79 3.16
728 755 4.150897 TGGGTATGGAATGTAGACAAGC 57.849 45.455 0.00 0.00 0.00 4.01
729 756 3.118038 TGGGTATGGAATGTAGACAAGCC 60.118 47.826 0.00 0.00 0.00 4.35
730 757 3.118038 GGGTATGGAATGTAGACAAGCCA 60.118 47.826 8.68 8.68 37.47 4.75
733 760 6.296026 GGTATGGAATGTAGACAAGCCATTA 58.704 40.000 18.84 7.84 41.21 1.90
734 761 6.770785 GGTATGGAATGTAGACAAGCCATTAA 59.229 38.462 18.84 5.66 41.21 1.40
735 762 6.699575 ATGGAATGTAGACAAGCCATTAAC 57.300 37.500 11.70 0.00 39.33 2.01
738 765 7.342581 TGGAATGTAGACAAGCCATTAACATA 58.657 34.615 3.50 0.00 31.20 2.29
739 766 7.998383 TGGAATGTAGACAAGCCATTAACATAT 59.002 33.333 3.50 0.00 31.20 1.78
740 767 8.850156 GGAATGTAGACAAGCCATTAACATATT 58.150 33.333 0.00 0.00 0.00 1.28
745 772 7.832503 AGACAAGCCATTAACATATTTTTGC 57.167 32.000 0.00 0.00 0.00 3.68
746 773 7.614494 AGACAAGCCATTAACATATTTTTGCT 58.386 30.769 0.00 0.00 0.00 3.91
747 774 7.546667 AGACAAGCCATTAACATATTTTTGCTG 59.453 33.333 0.00 0.00 0.00 4.41
748 775 7.385267 ACAAGCCATTAACATATTTTTGCTGA 58.615 30.769 0.00 0.00 0.00 4.26
749 776 7.546667 ACAAGCCATTAACATATTTTTGCTGAG 59.453 33.333 0.00 0.00 0.00 3.35
750 777 7.174107 AGCCATTAACATATTTTTGCTGAGT 57.826 32.000 0.00 0.00 0.00 3.41
751 778 7.614494 AGCCATTAACATATTTTTGCTGAGTT 58.386 30.769 0.00 0.00 0.00 3.01
752 779 7.546667 AGCCATTAACATATTTTTGCTGAGTTG 59.453 33.333 0.00 0.00 0.00 3.16
753 780 7.331687 GCCATTAACATATTTTTGCTGAGTTGT 59.668 33.333 0.00 0.00 0.00 3.32
754 781 8.863049 CCATTAACATATTTTTGCTGAGTTGTC 58.137 33.333 0.00 0.00 0.00 3.18
755 782 9.630098 CATTAACATATTTTTGCTGAGTTGTCT 57.370 29.630 0.00 0.00 0.00 3.41
756 783 9.630098 ATTAACATATTTTTGCTGAGTTGTCTG 57.370 29.630 0.00 0.00 0.00 3.51
757 784 6.882610 ACATATTTTTGCTGAGTTGTCTGA 57.117 33.333 0.00 0.00 0.00 3.27
758 785 7.458409 ACATATTTTTGCTGAGTTGTCTGAT 57.542 32.000 0.00 0.00 0.00 2.90
759 786 7.889469 ACATATTTTTGCTGAGTTGTCTGATT 58.111 30.769 0.00 0.00 0.00 2.57
760 787 8.362639 ACATATTTTTGCTGAGTTGTCTGATTT 58.637 29.630 0.00 0.00 0.00 2.17
761 788 8.857216 CATATTTTTGCTGAGTTGTCTGATTTC 58.143 33.333 0.00 0.00 0.00 2.17
762 789 5.833406 TTTTGCTGAGTTGTCTGATTTCA 57.167 34.783 0.00 0.00 0.00 2.69
763 790 5.428496 TTTGCTGAGTTGTCTGATTTCAG 57.572 39.130 0.97 0.97 45.08 3.02
827 854 8.870160 TTCAGTTTGATTGTTTGTATGGAAAG 57.130 30.769 0.00 0.00 0.00 2.62
960 1093 4.507710 TCAGGTTGCTATCTGATTGTGTC 58.492 43.478 7.05 0.00 35.37 3.67
1205 1341 0.171903 GCATCAATCTTGCTTGCCGT 59.828 50.000 6.47 0.00 37.14 5.68
1477 1613 5.103686 AGCTTATGTTTCTTGGCCCCTAATA 60.104 40.000 0.00 0.00 0.00 0.98
1512 1648 4.778213 TTCTCTGCAGGCATTAGGTTAT 57.222 40.909 15.13 0.00 0.00 1.89
1524 1660 6.891908 AGGCATTAGGTTATGAGTTTGACAAT 59.108 34.615 0.00 0.00 0.00 2.71
1678 1822 7.988737 TCTTCTAATCATTACACCTTGCATTG 58.011 34.615 0.00 0.00 0.00 2.82
1820 1964 2.679059 CGAGACATTGAATCCACCAGCT 60.679 50.000 0.00 0.00 0.00 4.24
1852 1996 1.825622 GCCTATGCAAGTCCCAGGC 60.826 63.158 0.00 0.00 44.54 4.85
1865 2009 2.219875 CCAGGCGGATCCTATGGCT 61.220 63.158 10.75 9.30 45.52 4.75
1873 2017 2.554124 CGGATCCTATGGCTCTCTCTGA 60.554 54.545 10.75 0.00 0.00 3.27
1904 2048 1.390565 CCGACTTGGACGGTCTCTAT 58.609 55.000 8.23 0.00 44.57 1.98
1929 2073 2.705658 TCGGATGGCAGACCTAAATCAT 59.294 45.455 10.85 0.00 36.63 2.45
1976 2120 0.748450 CCATGGAAGCCGCAATTCAT 59.252 50.000 5.56 0.00 0.00 2.57
1979 2123 3.366679 CCATGGAAGCCGCAATTCATATC 60.367 47.826 5.56 0.00 0.00 1.63
2007 2151 8.660373 CAAATGTTGATCCTAAGAAGACAGTAC 58.340 37.037 0.00 0.00 0.00 2.73
2032 2176 5.374921 AGCAATCCCTCTTTCATACATGAG 58.625 41.667 0.00 0.00 38.19 2.90
2046 2190 1.271597 ACATGAGCAAGAACACTCCCC 60.272 52.381 0.00 0.00 31.65 4.81
2058 2202 2.308722 ACTCCCCACCGGCAATGAT 61.309 57.895 0.00 0.00 0.00 2.45
2082 2226 4.911390 ACCTGATAGTTTGCTACTTTGCT 58.089 39.130 0.00 0.00 38.33 3.91
2090 2234 5.316987 AGTTTGCTACTTTGCTACTTCCAT 58.683 37.500 0.00 0.00 31.29 3.41
2127 2271 0.038166 ATGACAGCACCCGGAACATT 59.962 50.000 0.73 0.00 0.00 2.71
2142 2286 1.839424 ACATTGCTACAGGAAAGGCC 58.161 50.000 0.00 0.00 0.00 5.19
2266 2410 2.113774 TGCAGGTTGGCAGGTCAG 59.886 61.111 0.00 0.00 39.25 3.51
2293 2437 1.153061 CCAGGGGCTGATCATGCAT 59.847 57.895 15.83 0.00 32.44 3.96
2460 2604 5.762825 ATCATCGGAGAATGGAATGTTTG 57.237 39.130 0.00 0.00 43.58 2.93
2461 2605 3.947196 TCATCGGAGAATGGAATGTTTGG 59.053 43.478 0.00 0.00 43.58 3.28
2462 2606 2.722094 TCGGAGAATGGAATGTTTGGG 58.278 47.619 0.00 0.00 0.00 4.12
2463 2607 2.041081 TCGGAGAATGGAATGTTTGGGT 59.959 45.455 0.00 0.00 0.00 4.51
2464 2608 2.164219 CGGAGAATGGAATGTTTGGGTG 59.836 50.000 0.00 0.00 0.00 4.61
2465 2609 2.497273 GGAGAATGGAATGTTTGGGTGG 59.503 50.000 0.00 0.00 0.00 4.61
2467 2611 3.831911 GAGAATGGAATGTTTGGGTGGAA 59.168 43.478 0.00 0.00 0.00 3.53
2468 2612 4.230455 AGAATGGAATGTTTGGGTGGAAA 58.770 39.130 0.00 0.00 0.00 3.13
2469 2613 4.845796 AGAATGGAATGTTTGGGTGGAAAT 59.154 37.500 0.00 0.00 0.00 2.17
2470 2614 6.022315 AGAATGGAATGTTTGGGTGGAAATA 58.978 36.000 0.00 0.00 0.00 1.40
2471 2615 5.937975 ATGGAATGTTTGGGTGGAAATAG 57.062 39.130 0.00 0.00 0.00 1.73
2472 2616 4.746466 TGGAATGTTTGGGTGGAAATAGT 58.254 39.130 0.00 0.00 0.00 2.12
2473 2617 5.893500 TGGAATGTTTGGGTGGAAATAGTA 58.106 37.500 0.00 0.00 0.00 1.82
2474 2618 6.498538 TGGAATGTTTGGGTGGAAATAGTAT 58.501 36.000 0.00 0.00 0.00 2.12
2475 2619 6.379703 TGGAATGTTTGGGTGGAAATAGTATG 59.620 38.462 0.00 0.00 0.00 2.39
2476 2620 5.852282 ATGTTTGGGTGGAAATAGTATGC 57.148 39.130 0.00 0.00 0.00 3.14
2477 2621 4.929479 TGTTTGGGTGGAAATAGTATGCT 58.071 39.130 0.00 0.00 0.00 3.79
2478 2622 4.704540 TGTTTGGGTGGAAATAGTATGCTG 59.295 41.667 0.00 0.00 0.00 4.41
2479 2623 4.853468 TTGGGTGGAAATAGTATGCTGA 57.147 40.909 0.00 0.00 0.00 4.26
2480 2624 4.853468 TGGGTGGAAATAGTATGCTGAA 57.147 40.909 0.00 0.00 0.00 3.02
2481 2625 4.780815 TGGGTGGAAATAGTATGCTGAAG 58.219 43.478 0.00 0.00 0.00 3.02
2482 2626 4.473196 TGGGTGGAAATAGTATGCTGAAGA 59.527 41.667 0.00 0.00 0.00 2.87
2483 2627 5.132648 TGGGTGGAAATAGTATGCTGAAGAT 59.867 40.000 0.00 0.00 0.00 2.40
2484 2628 6.064717 GGGTGGAAATAGTATGCTGAAGATT 58.935 40.000 0.00 0.00 0.00 2.40
2485 2629 6.016777 GGGTGGAAATAGTATGCTGAAGATTG 60.017 42.308 0.00 0.00 0.00 2.67
2486 2630 6.016777 GGTGGAAATAGTATGCTGAAGATTGG 60.017 42.308 0.00 0.00 0.00 3.16
2487 2631 6.767902 GTGGAAATAGTATGCTGAAGATTGGA 59.232 38.462 0.00 0.00 0.00 3.53
2488 2632 7.446625 GTGGAAATAGTATGCTGAAGATTGGAT 59.553 37.037 0.00 0.00 0.00 3.41
2489 2633 8.659527 TGGAAATAGTATGCTGAAGATTGGATA 58.340 33.333 0.00 0.00 0.00 2.59
2490 2634 8.940952 GGAAATAGTATGCTGAAGATTGGATAC 58.059 37.037 0.00 0.00 37.63 2.24
2491 2635 8.539770 AAATAGTATGCTGAAGATTGGATACG 57.460 34.615 0.00 0.00 40.69 3.06
2492 2636 5.537300 AGTATGCTGAAGATTGGATACGT 57.463 39.130 0.00 0.00 40.69 3.57
2493 2637 5.292765 AGTATGCTGAAGATTGGATACGTG 58.707 41.667 0.00 0.00 40.69 4.49
2494 2638 2.905075 TGCTGAAGATTGGATACGTGG 58.095 47.619 0.00 0.00 42.51 4.94
2495 2639 2.499693 TGCTGAAGATTGGATACGTGGA 59.500 45.455 0.00 0.00 42.51 4.02
2496 2640 3.126831 GCTGAAGATTGGATACGTGGAG 58.873 50.000 0.00 0.00 42.51 3.86
2497 2641 3.722147 CTGAAGATTGGATACGTGGAGG 58.278 50.000 0.00 0.00 42.51 4.30
2498 2642 3.371034 TGAAGATTGGATACGTGGAGGA 58.629 45.455 0.00 0.00 42.51 3.71
2499 2643 3.384789 TGAAGATTGGATACGTGGAGGAG 59.615 47.826 0.00 0.00 42.51 3.69
2500 2644 3.033659 AGATTGGATACGTGGAGGAGT 57.966 47.619 0.00 0.00 42.51 3.85
2501 2645 4.180377 AGATTGGATACGTGGAGGAGTA 57.820 45.455 0.00 0.00 42.51 2.59
2502 2646 4.742012 AGATTGGATACGTGGAGGAGTAT 58.258 43.478 0.00 0.00 42.51 2.12
2503 2647 5.888901 AGATTGGATACGTGGAGGAGTATA 58.111 41.667 0.00 0.00 42.51 1.47
2504 2648 6.312529 AGATTGGATACGTGGAGGAGTATAA 58.687 40.000 0.00 0.00 42.51 0.98
2505 2649 6.781014 AGATTGGATACGTGGAGGAGTATAAA 59.219 38.462 0.00 0.00 42.51 1.40
2506 2650 6.401047 TTGGATACGTGGAGGAGTATAAAG 57.599 41.667 0.00 0.00 42.51 1.85
2507 2651 5.698104 TGGATACGTGGAGGAGTATAAAGA 58.302 41.667 0.00 0.00 42.51 2.52
2508 2652 6.312529 TGGATACGTGGAGGAGTATAAAGAT 58.687 40.000 0.00 0.00 42.51 2.40
2509 2653 7.464273 TGGATACGTGGAGGAGTATAAAGATA 58.536 38.462 0.00 0.00 42.51 1.98
2510 2654 7.946219 TGGATACGTGGAGGAGTATAAAGATAA 59.054 37.037 0.00 0.00 42.51 1.75
2511 2655 8.460428 GGATACGTGGAGGAGTATAAAGATAAG 58.540 40.741 0.00 0.00 34.09 1.73
2512 2656 9.228949 GATACGTGGAGGAGTATAAAGATAAGA 57.771 37.037 0.00 0.00 34.09 2.10
2513 2657 9.756571 ATACGTGGAGGAGTATAAAGATAAGAT 57.243 33.333 0.00 0.00 32.37 2.40
2514 2658 7.887381 ACGTGGAGGAGTATAAAGATAAGATG 58.113 38.462 0.00 0.00 0.00 2.90
2515 2659 7.724506 ACGTGGAGGAGTATAAAGATAAGATGA 59.275 37.037 0.00 0.00 0.00 2.92
2516 2660 8.240682 CGTGGAGGAGTATAAAGATAAGATGAG 58.759 40.741 0.00 0.00 0.00 2.90
2517 2661 9.084533 GTGGAGGAGTATAAAGATAAGATGAGT 57.915 37.037 0.00 0.00 0.00 3.41
2518 2662 9.303116 TGGAGGAGTATAAAGATAAGATGAGTC 57.697 37.037 0.00 0.00 0.00 3.36
2519 2663 8.745590 GGAGGAGTATAAAGATAAGATGAGTCC 58.254 40.741 0.00 0.00 0.00 3.85
2520 2664 8.343168 AGGAGTATAAAGATAAGATGAGTCCG 57.657 38.462 0.00 0.00 0.00 4.79
2521 2665 8.164733 AGGAGTATAAAGATAAGATGAGTCCGA 58.835 37.037 0.00 0.00 0.00 4.55
2522 2666 8.962679 GGAGTATAAAGATAAGATGAGTCCGAT 58.037 37.037 0.00 0.00 0.00 4.18
2523 2667 9.997482 GAGTATAAAGATAAGATGAGTCCGATC 57.003 37.037 0.00 0.00 0.00 3.69
2524 2668 9.521841 AGTATAAAGATAAGATGAGTCCGATCA 57.478 33.333 0.00 0.00 0.00 2.92
2529 2673 7.767250 AGATAAGATGAGTCCGATCATAACA 57.233 36.000 0.00 0.00 40.02 2.41
2530 2674 8.359875 AGATAAGATGAGTCCGATCATAACAT 57.640 34.615 0.00 0.00 40.02 2.71
2531 2675 8.465999 AGATAAGATGAGTCCGATCATAACATC 58.534 37.037 0.00 0.00 40.02 3.06
2532 2676 6.662865 AAGATGAGTCCGATCATAACATCT 57.337 37.500 0.00 0.00 42.69 2.90
2533 2677 7.767250 AAGATGAGTCCGATCATAACATCTA 57.233 36.000 14.89 0.00 40.92 1.98
2534 2678 7.151999 AGATGAGTCCGATCATAACATCTAC 57.848 40.000 13.71 0.00 40.02 2.59
2535 2679 6.717084 AGATGAGTCCGATCATAACATCTACA 59.283 38.462 13.71 0.00 40.02 2.74
2536 2680 6.901081 TGAGTCCGATCATAACATCTACAT 57.099 37.500 0.00 0.00 0.00 2.29
2537 2681 7.290110 TGAGTCCGATCATAACATCTACATT 57.710 36.000 0.00 0.00 0.00 2.71
2538 2682 7.147976 TGAGTCCGATCATAACATCTACATTG 58.852 38.462 0.00 0.00 0.00 2.82
2539 2683 5.928839 AGTCCGATCATAACATCTACATTGC 59.071 40.000 0.00 0.00 0.00 3.56
2540 2684 5.928839 GTCCGATCATAACATCTACATTGCT 59.071 40.000 0.00 0.00 0.00 3.91
2541 2685 7.039714 AGTCCGATCATAACATCTACATTGCTA 60.040 37.037 0.00 0.00 0.00 3.49
2542 2686 7.274468 GTCCGATCATAACATCTACATTGCTAG 59.726 40.741 0.00 0.00 0.00 3.42
2543 2687 7.176690 TCCGATCATAACATCTACATTGCTAGA 59.823 37.037 0.00 0.00 0.00 2.43
2544 2688 7.978414 CCGATCATAACATCTACATTGCTAGAT 59.022 37.037 0.00 4.10 34.33 1.98
2557 2701 2.770699 GCTAGATGCACTTCCATTGC 57.229 50.000 0.00 0.00 42.31 3.56
2566 2710 5.756195 TGCACTTCCATTGCATTATACTC 57.244 39.130 0.00 0.00 45.06 2.59
2567 2711 4.580167 TGCACTTCCATTGCATTATACTCC 59.420 41.667 0.00 0.00 45.06 3.85
2568 2712 4.022849 GCACTTCCATTGCATTATACTCCC 60.023 45.833 0.00 0.00 39.93 4.30
2569 2713 5.380043 CACTTCCATTGCATTATACTCCCT 58.620 41.667 0.00 0.00 0.00 4.20
2570 2714 5.471456 CACTTCCATTGCATTATACTCCCTC 59.529 44.000 0.00 0.00 0.00 4.30
2571 2715 4.640771 TCCATTGCATTATACTCCCTCC 57.359 45.455 0.00 0.00 0.00 4.30
2572 2716 3.007940 TCCATTGCATTATACTCCCTCCG 59.992 47.826 0.00 0.00 0.00 4.63
2573 2717 3.244561 CCATTGCATTATACTCCCTCCGT 60.245 47.826 0.00 0.00 0.00 4.69
2574 2718 4.389374 CATTGCATTATACTCCCTCCGTT 58.611 43.478 0.00 0.00 0.00 4.44
2575 2719 3.746045 TGCATTATACTCCCTCCGTTC 57.254 47.619 0.00 0.00 0.00 3.95
2576 2720 2.367567 TGCATTATACTCCCTCCGTTCC 59.632 50.000 0.00 0.00 0.00 3.62
2577 2721 2.633481 GCATTATACTCCCTCCGTTCCT 59.367 50.000 0.00 0.00 0.00 3.36
2578 2722 3.830755 GCATTATACTCCCTCCGTTCCTA 59.169 47.826 0.00 0.00 0.00 2.94
2579 2723 4.282703 GCATTATACTCCCTCCGTTCCTAA 59.717 45.833 0.00 0.00 0.00 2.69
2580 2724 5.221581 GCATTATACTCCCTCCGTTCCTAAA 60.222 44.000 0.00 0.00 0.00 1.85
2581 2725 6.520231 GCATTATACTCCCTCCGTTCCTAAAT 60.520 42.308 0.00 0.00 0.00 1.40
2582 2726 7.310237 GCATTATACTCCCTCCGTTCCTAAATA 60.310 40.741 0.00 0.00 0.00 1.40
2583 2727 8.759782 CATTATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
2585 2729 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
2586 2730 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2587 2731 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2588 2732 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2589 2733 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2590 2734 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2591 2735 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2592 2736 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2593 2737 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2654 2798 8.798859 AGACATATTTTAGAGTGCACTCATTT 57.201 30.769 40.25 26.29 45.21 2.32
2655 2799 9.236006 AGACATATTTTAGAGTGCACTCATTTT 57.764 29.630 40.25 25.97 45.21 1.82
2656 2800 9.282247 GACATATTTTAGAGTGCACTCATTTTG 57.718 33.333 40.25 28.68 45.21 2.44
2657 2801 7.756722 ACATATTTTAGAGTGCACTCATTTTGC 59.243 33.333 40.25 18.83 45.21 3.68
2658 2802 5.772825 TTTTAGAGTGCACTCATTTTGCT 57.227 34.783 40.25 24.33 45.21 3.91
2659 2803 5.362556 TTTAGAGTGCACTCATTTTGCTC 57.637 39.130 40.25 17.62 45.21 4.26
2660 2804 2.157738 AGAGTGCACTCATTTTGCTCC 58.842 47.619 40.25 16.73 45.21 4.70
2661 2805 0.877071 AGTGCACTCATTTTGCTCCG 59.123 50.000 15.25 0.00 40.86 4.63
2662 2806 0.593128 GTGCACTCATTTTGCTCCGT 59.407 50.000 10.32 0.00 40.86 4.69
2663 2807 1.804151 GTGCACTCATTTTGCTCCGTA 59.196 47.619 10.32 0.00 40.86 4.02
2664 2808 2.420022 GTGCACTCATTTTGCTCCGTAT 59.580 45.455 10.32 0.00 40.86 3.06
2665 2809 2.419673 TGCACTCATTTTGCTCCGTATG 59.580 45.455 0.00 0.00 40.86 2.39
2666 2810 2.420022 GCACTCATTTTGCTCCGTATGT 59.580 45.455 0.00 0.00 37.00 2.29
2667 2811 3.621268 GCACTCATTTTGCTCCGTATGTA 59.379 43.478 0.00 0.00 37.00 2.29
2668 2812 4.260375 GCACTCATTTTGCTCCGTATGTAG 60.260 45.833 0.00 0.00 37.00 2.74
2669 2813 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2670 2814 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2671 2815 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2672 2816 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2673 2817 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2674 2818 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2675 2819 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
2676 2820 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
2677 2821 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
2678 2822 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
2679 2823 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
2694 2838 7.861629 TCCATAGTGGAATCTGTCAAAATACT 58.138 34.615 0.00 0.00 45.00 2.12
2695 2839 8.328758 TCCATAGTGGAATCTGTCAAAATACTT 58.671 33.333 0.00 0.00 45.00 2.24
2696 2840 8.400947 CCATAGTGGAATCTGTCAAAATACTTG 58.599 37.037 0.00 0.00 40.96 3.16
2697 2841 8.950210 CATAGTGGAATCTGTCAAAATACTTGT 58.050 33.333 0.00 0.00 0.00 3.16
2700 2844 9.520515 AGTGGAATCTGTCAAAATACTTGTATT 57.479 29.630 0.60 0.60 0.00 1.89
2708 2852 9.755064 CTGTCAAAATACTTGTATTTAGGAACG 57.245 33.333 16.17 9.40 0.00 3.95
2709 2853 8.723311 TGTCAAAATACTTGTATTTAGGAACGG 58.277 33.333 16.17 4.56 0.00 4.44
2710 2854 8.938906 GTCAAAATACTTGTATTTAGGAACGGA 58.061 33.333 16.17 6.19 0.00 4.69
2711 2855 9.158233 TCAAAATACTTGTATTTAGGAACGGAG 57.842 33.333 16.17 3.10 0.00 4.63
2712 2856 8.395633 CAAAATACTTGTATTTAGGAACGGAGG 58.604 37.037 16.17 0.00 0.00 4.30
2713 2857 3.870274 ACTTGTATTTAGGAACGGAGGC 58.130 45.455 0.00 0.00 0.00 4.70
2714 2858 3.262405 ACTTGTATTTAGGAACGGAGGCA 59.738 43.478 0.00 0.00 0.00 4.75
2715 2859 3.536956 TGTATTTAGGAACGGAGGCAG 57.463 47.619 0.00 0.00 0.00 4.85
2716 2860 2.835764 TGTATTTAGGAACGGAGGCAGT 59.164 45.455 0.00 0.00 0.00 4.40
2717 2861 4.025360 TGTATTTAGGAACGGAGGCAGTA 58.975 43.478 0.00 0.00 0.00 2.74
2718 2862 4.652421 TGTATTTAGGAACGGAGGCAGTAT 59.348 41.667 0.00 0.00 0.00 2.12
2719 2863 5.834742 TGTATTTAGGAACGGAGGCAGTATA 59.165 40.000 0.00 0.00 0.00 1.47
2720 2864 5.881923 ATTTAGGAACGGAGGCAGTATAA 57.118 39.130 0.00 0.00 0.00 0.98
2721 2865 4.931661 TTAGGAACGGAGGCAGTATAAG 57.068 45.455 0.00 0.00 0.00 1.73
2722 2866 2.748388 AGGAACGGAGGCAGTATAAGT 58.252 47.619 0.00 0.00 0.00 2.24
2723 2867 3.105283 AGGAACGGAGGCAGTATAAGTT 58.895 45.455 0.00 0.00 0.00 2.66
2724 2868 3.518303 AGGAACGGAGGCAGTATAAGTTT 59.482 43.478 0.00 0.00 0.00 2.66
2725 2869 3.869832 GGAACGGAGGCAGTATAAGTTTC 59.130 47.826 0.00 0.00 0.00 2.78
2726 2870 4.501071 GAACGGAGGCAGTATAAGTTTCA 58.499 43.478 0.00 0.00 0.00 2.69
2727 2871 4.546829 ACGGAGGCAGTATAAGTTTCAA 57.453 40.909 0.00 0.00 0.00 2.69
2728 2872 4.504858 ACGGAGGCAGTATAAGTTTCAAG 58.495 43.478 0.00 0.00 0.00 3.02
2729 2873 3.871594 CGGAGGCAGTATAAGTTTCAAGG 59.128 47.826 0.00 0.00 0.00 3.61
2730 2874 4.382685 CGGAGGCAGTATAAGTTTCAAGGA 60.383 45.833 0.00 0.00 0.00 3.36
2731 2875 5.497474 GGAGGCAGTATAAGTTTCAAGGAA 58.503 41.667 0.00 0.00 0.00 3.36
2732 2876 5.944007 GGAGGCAGTATAAGTTTCAAGGAAA 59.056 40.000 0.00 0.00 0.00 3.13
2733 2877 6.603599 GGAGGCAGTATAAGTTTCAAGGAAAT 59.396 38.462 0.00 0.00 33.97 2.17
2734 2878 7.396540 AGGCAGTATAAGTTTCAAGGAAATG 57.603 36.000 0.00 0.00 33.97 2.32
2735 2879 6.948309 AGGCAGTATAAGTTTCAAGGAAATGT 59.052 34.615 0.00 0.00 33.97 2.71
2736 2880 8.107095 AGGCAGTATAAGTTTCAAGGAAATGTA 58.893 33.333 0.00 0.00 33.97 2.29
2737 2881 8.398665 GGCAGTATAAGTTTCAAGGAAATGTAG 58.601 37.037 0.00 0.00 33.97 2.74
2738 2882 8.947115 GCAGTATAAGTTTCAAGGAAATGTAGT 58.053 33.333 0.00 0.00 33.97 2.73
2740 2884 9.449719 AGTATAAGTTTCAAGGAAATGTAGTGG 57.550 33.333 0.00 0.00 33.97 4.00
2741 2885 9.444600 GTATAAGTTTCAAGGAAATGTAGTGGA 57.555 33.333 0.00 0.00 33.97 4.02
2742 2886 8.934023 ATAAGTTTCAAGGAAATGTAGTGGAA 57.066 30.769 0.00 0.00 33.97 3.53
2743 2887 7.654022 AAGTTTCAAGGAAATGTAGTGGAAA 57.346 32.000 0.00 0.00 33.97 3.13
2744 2888 7.654022 AGTTTCAAGGAAATGTAGTGGAAAA 57.346 32.000 0.00 0.00 33.97 2.29
2745 2889 8.250143 AGTTTCAAGGAAATGTAGTGGAAAAT 57.750 30.769 0.00 0.00 33.97 1.82
2746 2890 9.362151 AGTTTCAAGGAAATGTAGTGGAAAATA 57.638 29.630 0.00 0.00 33.97 1.40
2747 2891 9.974980 GTTTCAAGGAAATGTAGTGGAAAATAA 57.025 29.630 0.00 0.00 33.97 1.40
2749 2893 7.826690 TCAAGGAAATGTAGTGGAAAATAAGC 58.173 34.615 0.00 0.00 0.00 3.09
2750 2894 7.450014 TCAAGGAAATGTAGTGGAAAATAAGCA 59.550 33.333 0.00 0.00 0.00 3.91
2751 2895 7.961326 AGGAAATGTAGTGGAAAATAAGCAT 57.039 32.000 0.00 0.00 0.00 3.79
2752 2896 8.000780 AGGAAATGTAGTGGAAAATAAGCATC 57.999 34.615 0.00 0.00 0.00 3.91
2753 2897 7.615365 AGGAAATGTAGTGGAAAATAAGCATCA 59.385 33.333 0.00 0.00 0.00 3.07
2754 2898 7.917505 GGAAATGTAGTGGAAAATAAGCATCAG 59.082 37.037 0.00 0.00 0.00 2.90
2755 2899 5.818136 TGTAGTGGAAAATAAGCATCAGC 57.182 39.130 0.00 0.00 42.56 4.26
2756 2900 5.252547 TGTAGTGGAAAATAAGCATCAGCA 58.747 37.500 0.00 0.00 45.49 4.41
2757 2901 4.978083 AGTGGAAAATAAGCATCAGCAG 57.022 40.909 0.00 0.00 45.49 4.24
2758 2902 3.698040 AGTGGAAAATAAGCATCAGCAGG 59.302 43.478 0.00 0.00 45.49 4.85
2759 2903 3.445096 GTGGAAAATAAGCATCAGCAGGT 59.555 43.478 0.00 0.00 45.49 4.00
2760 2904 3.444742 TGGAAAATAAGCATCAGCAGGTG 59.555 43.478 0.00 0.00 45.49 4.00
2761 2905 3.442100 GAAAATAAGCATCAGCAGGTGC 58.558 45.455 6.17 6.17 45.49 5.01
2762 2906 2.133281 AATAAGCATCAGCAGGTGCA 57.867 45.000 17.30 0.00 45.49 4.57
2763 2907 2.359981 ATAAGCATCAGCAGGTGCAT 57.640 45.000 17.30 7.26 45.49 3.96
2764 2908 3.497103 ATAAGCATCAGCAGGTGCATA 57.503 42.857 17.30 9.50 45.49 3.14
2765 2909 2.359981 AAGCATCAGCAGGTGCATAT 57.640 45.000 17.30 0.00 45.49 1.78
2766 2910 2.359981 AGCATCAGCAGGTGCATATT 57.640 45.000 17.30 0.00 45.49 1.28
2767 2911 3.497103 AGCATCAGCAGGTGCATATTA 57.503 42.857 17.30 0.00 45.49 0.98
2768 2912 3.409570 AGCATCAGCAGGTGCATATTAG 58.590 45.455 17.30 0.00 45.49 1.73
2769 2913 3.144506 GCATCAGCAGGTGCATATTAGT 58.855 45.455 9.80 0.00 45.16 2.24
2770 2914 4.040829 AGCATCAGCAGGTGCATATTAGTA 59.959 41.667 17.30 0.00 45.49 1.82
2771 2915 4.940046 GCATCAGCAGGTGCATATTAGTAT 59.060 41.667 9.80 0.00 45.16 2.12
2772 2916 5.064452 GCATCAGCAGGTGCATATTAGTATC 59.936 44.000 9.80 0.00 45.16 2.24
2773 2917 6.404708 CATCAGCAGGTGCATATTAGTATCT 58.595 40.000 4.48 0.00 45.16 1.98
2774 2918 7.550712 CATCAGCAGGTGCATATTAGTATCTA 58.449 38.462 4.48 0.00 45.16 1.98
2775 2919 6.925211 TCAGCAGGTGCATATTAGTATCTAC 58.075 40.000 4.48 0.00 45.16 2.59
2776 2920 6.721668 TCAGCAGGTGCATATTAGTATCTACT 59.278 38.462 4.48 0.00 45.16 2.57
2777 2921 6.810676 CAGCAGGTGCATATTAGTATCTACTG 59.189 42.308 4.48 0.00 45.16 2.74
2778 2922 5.578727 GCAGGTGCATATTAGTATCTACTGC 59.421 44.000 0.00 0.00 41.59 4.40
2814 3033 9.005318 TGGACCTATATTTAACAAATACTCCCA 57.995 33.333 0.00 0.00 36.27 4.37
2822 3041 2.253610 ACAAATACTCCCACTGTCCGA 58.746 47.619 0.00 0.00 0.00 4.55
2844 3063 3.801114 AAAACTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
2845 3064 2.736670 AACTTGTCCCAAGCTTGTCT 57.263 45.000 24.35 0.00 0.00 3.41
2846 3065 2.262423 ACTTGTCCCAAGCTTGTCTC 57.738 50.000 24.35 13.85 0.00 3.36
2847 3066 1.771255 ACTTGTCCCAAGCTTGTCTCT 59.229 47.619 24.35 0.00 0.00 3.10
2848 3067 2.224402 ACTTGTCCCAAGCTTGTCTCTC 60.224 50.000 24.35 10.65 0.00 3.20
2849 3068 1.423584 TGTCCCAAGCTTGTCTCTCA 58.576 50.000 24.35 12.85 0.00 3.27
2850 3069 1.768275 TGTCCCAAGCTTGTCTCTCAA 59.232 47.619 24.35 1.41 34.61 3.02
2851 3070 2.373169 TGTCCCAAGCTTGTCTCTCAAT 59.627 45.455 24.35 0.00 35.35 2.57
2852 3071 3.181440 TGTCCCAAGCTTGTCTCTCAATT 60.181 43.478 24.35 0.00 35.35 2.32
2904 3123 9.276590 CTTGGTGCTATATACATTCATTTGAGA 57.723 33.333 0.00 0.00 0.00 3.27
2916 3135 7.495055 ACATTCATTTGAGAGACAAGCTTTTT 58.505 30.769 0.00 0.00 39.77 1.94
2935 3154 4.820894 TTTTGAAGGAGGGAGTAGTAGC 57.179 45.455 0.00 0.00 0.00 3.58
2936 3155 3.468071 TTGAAGGAGGGAGTAGTAGCA 57.532 47.619 0.00 0.00 0.00 3.49
2937 3156 3.689872 TGAAGGAGGGAGTAGTAGCAT 57.310 47.619 0.00 0.00 0.00 3.79
2938 3157 3.995636 TGAAGGAGGGAGTAGTAGCATT 58.004 45.455 0.00 0.00 0.00 3.56
2939 3158 3.706594 TGAAGGAGGGAGTAGTAGCATTG 59.293 47.826 0.00 0.00 0.00 2.82
2940 3159 3.406512 AGGAGGGAGTAGTAGCATTGT 57.593 47.619 0.00 0.00 0.00 2.71
2941 3160 4.537945 AGGAGGGAGTAGTAGCATTGTA 57.462 45.455 0.00 0.00 0.00 2.41
2942 3161 5.081315 AGGAGGGAGTAGTAGCATTGTAT 57.919 43.478 0.00 0.00 0.00 2.29
2943 3162 5.468658 AGGAGGGAGTAGTAGCATTGTATT 58.531 41.667 0.00 0.00 0.00 1.89
2944 3163 5.540719 AGGAGGGAGTAGTAGCATTGTATTC 59.459 44.000 0.00 0.00 0.00 1.75
2945 3164 5.540719 GGAGGGAGTAGTAGCATTGTATTCT 59.459 44.000 0.00 0.00 0.00 2.40
2946 3165 6.042208 GGAGGGAGTAGTAGCATTGTATTCTT 59.958 42.308 0.00 0.00 0.00 2.52
2947 3166 6.821388 AGGGAGTAGTAGCATTGTATTCTTG 58.179 40.000 0.00 0.00 0.00 3.02
2948 3167 5.992217 GGGAGTAGTAGCATTGTATTCTTGG 59.008 44.000 0.00 0.00 0.00 3.61
2949 3168 5.467063 GGAGTAGTAGCATTGTATTCTTGGC 59.533 44.000 0.00 0.00 0.00 4.52
2950 3169 5.368989 AGTAGTAGCATTGTATTCTTGGCC 58.631 41.667 0.00 0.00 0.00 5.36
2951 3170 4.510167 AGTAGCATTGTATTCTTGGCCT 57.490 40.909 3.32 0.00 0.00 5.19
2952 3171 4.860022 AGTAGCATTGTATTCTTGGCCTT 58.140 39.130 3.32 0.00 0.00 4.35
2953 3172 4.884164 AGTAGCATTGTATTCTTGGCCTTC 59.116 41.667 3.32 0.00 0.00 3.46
2954 3173 3.700538 AGCATTGTATTCTTGGCCTTCA 58.299 40.909 3.32 0.00 0.00 3.02
2955 3174 4.284178 AGCATTGTATTCTTGGCCTTCAT 58.716 39.130 3.32 0.00 0.00 2.57
2956 3175 5.448654 AGCATTGTATTCTTGGCCTTCATA 58.551 37.500 3.32 0.00 0.00 2.15
2957 3176 5.300286 AGCATTGTATTCTTGGCCTTCATAC 59.700 40.000 3.32 6.18 0.00 2.39
2958 3177 5.751680 CATTGTATTCTTGGCCTTCATACG 58.248 41.667 3.32 0.00 0.00 3.06
2959 3178 3.202906 TGTATTCTTGGCCTTCATACGC 58.797 45.455 3.32 0.00 0.00 4.42
2960 3179 1.680338 ATTCTTGGCCTTCATACGCC 58.320 50.000 3.32 0.00 45.92 5.68
2965 3184 2.823628 GGCCTTCATACGCCGATAC 58.176 57.895 0.00 0.00 34.94 2.24
2966 3185 0.317479 GGCCTTCATACGCCGATACT 59.683 55.000 0.00 0.00 34.94 2.12
2967 3186 1.669211 GGCCTTCATACGCCGATACTC 60.669 57.143 0.00 0.00 34.94 2.59
2968 3187 1.669211 GCCTTCATACGCCGATACTCC 60.669 57.143 0.00 0.00 0.00 3.85
2969 3188 1.887198 CCTTCATACGCCGATACTCCT 59.113 52.381 0.00 0.00 0.00 3.69
2979 3198 2.224161 GCCGATACTCCTCAGAAATGCT 60.224 50.000 0.00 0.00 0.00 3.79
2988 3207 1.209990 CTCAGAAATGCTGCCTCTCCT 59.790 52.381 0.00 0.00 44.52 3.69
2991 3210 2.093288 CAGAAATGCTGCCTCTCCTGTA 60.093 50.000 0.00 0.00 37.90 2.74
2992 3211 2.093235 AGAAATGCTGCCTCTCCTGTAC 60.093 50.000 0.00 0.00 0.00 2.90
3032 3251 6.612049 ACCAAAGTATCCCCAAAAAGTACAAA 59.388 34.615 0.00 0.00 0.00 2.83
3033 3252 7.291416 ACCAAAGTATCCCCAAAAAGTACAAAT 59.709 33.333 0.00 0.00 0.00 2.32
3034 3253 8.808092 CCAAAGTATCCCCAAAAAGTACAAATA 58.192 33.333 0.00 0.00 0.00 1.40
3062 3281 9.875708 TTTCATATGGGCAATATACCTTAAAGT 57.124 29.630 2.13 0.00 29.85 2.66
3063 3282 8.862325 TCATATGGGCAATATACCTTAAAGTG 57.138 34.615 2.13 0.00 29.85 3.16
3064 3283 8.444783 TCATATGGGCAATATACCTTAAAGTGT 58.555 33.333 2.13 0.00 29.85 3.55
3065 3284 9.733556 CATATGGGCAATATACCTTAAAGTGTA 57.266 33.333 0.00 0.00 29.85 2.90
3067 3286 8.635765 ATGGGCAATATACCTTAAAGTGTATG 57.364 34.615 0.00 0.00 0.00 2.39
3068 3287 7.001674 TGGGCAATATACCTTAAAGTGTATGG 58.998 38.462 0.00 0.00 0.00 2.74
3069 3288 6.072119 GGGCAATATACCTTAAAGTGTATGGC 60.072 42.308 10.44 10.44 39.06 4.40
3070 3289 6.715264 GGCAATATACCTTAAAGTGTATGGCT 59.285 38.462 15.85 0.00 39.48 4.75
3071 3290 7.308589 GGCAATATACCTTAAAGTGTATGGCTG 60.309 40.741 15.85 4.46 39.48 4.85
3135 3354 4.942852 TGTTGCAAAACCCACTTATTGAG 58.057 39.130 0.00 0.00 0.00 3.02
3142 3361 6.238925 GCAAAACCCACTTATTGAGTACACTT 60.239 38.462 0.00 0.00 36.65 3.16
3183 3403 8.792831 CATGTAATGCTATCCTGAAACAAATC 57.207 34.615 0.00 0.00 37.62 2.17
3187 3407 4.934356 TGCTATCCTGAAACAAATCCCTT 58.066 39.130 0.00 0.00 0.00 3.95
3188 3408 4.706476 TGCTATCCTGAAACAAATCCCTTG 59.294 41.667 0.00 0.00 41.19 3.61
3252 3472 4.021368 TCTCCGTCAAGAAAAGTAAGAGGG 60.021 45.833 0.00 0.00 36.02 4.30
3288 3508 6.077838 GGTAAATCAACACTTCGATGACAAC 58.922 40.000 5.16 0.00 0.00 3.32
3300 3573 5.160607 TCGATGACAACCAAGGAAACTAT 57.839 39.130 0.00 0.00 42.68 2.12
3340 3613 9.685276 ACAAATAGAATGAGACATGACCAAATA 57.315 29.630 0.00 0.00 0.00 1.40
3350 3623 6.893583 AGACATGACCAAATACAGAGCTAAT 58.106 36.000 0.00 0.00 0.00 1.73
3351 3624 7.341805 AGACATGACCAAATACAGAGCTAATT 58.658 34.615 0.00 0.00 0.00 1.40
3352 3625 8.486210 AGACATGACCAAATACAGAGCTAATTA 58.514 33.333 0.00 0.00 0.00 1.40
3353 3626 9.109393 GACATGACCAAATACAGAGCTAATTAA 57.891 33.333 0.00 0.00 0.00 1.40
3387 3660 0.609151 TCCCGTACGGAAAGCATTCA 59.391 50.000 35.41 4.50 37.88 2.57
3402 3675 5.495926 AGCATTCAGTGGGATATTCTAGG 57.504 43.478 0.00 0.00 0.00 3.02
3403 3676 4.288105 AGCATTCAGTGGGATATTCTAGGG 59.712 45.833 0.00 0.00 0.00 3.53
3405 3678 5.221925 GCATTCAGTGGGATATTCTAGGGAA 60.222 44.000 0.00 0.00 35.78 3.97
3406 3679 6.523150 GCATTCAGTGGGATATTCTAGGGAAT 60.523 42.308 0.00 0.00 43.67 3.01
3407 3680 7.311297 GCATTCAGTGGGATATTCTAGGGAATA 60.311 40.741 1.71 1.71 45.09 1.75
3408 3681 7.798710 TTCAGTGGGATATTCTAGGGAATAG 57.201 40.000 5.03 0.00 44.49 1.73
3409 3682 6.264528 TCAGTGGGATATTCTAGGGAATAGG 58.735 44.000 5.03 0.00 44.49 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.202182 CCCTGGATTTTTGCATACATGAGG 60.202 45.833 0.00 0.00 0.00 3.86
114 115 1.303643 CACAAGCCAGAACCTCCCC 60.304 63.158 0.00 0.00 0.00 4.81
135 139 1.748122 GCTCTCATGTGCCCACTGG 60.748 63.158 0.00 0.00 0.00 4.00
136 140 1.748122 GGCTCTCATGTGCCCACTG 60.748 63.158 13.44 0.00 44.54 3.66
137 141 2.673523 GGCTCTCATGTGCCCACT 59.326 61.111 13.44 0.00 44.54 4.00
157 161 5.865085 ACAACAGGCTAGTGTTCAAATCTA 58.135 37.500 0.00 0.00 38.65 1.98
179 183 3.740115 TGCCACTTTCCTACAGAAGAAC 58.260 45.455 0.00 0.00 35.40 3.01
346 351 1.098050 GCCTGGTAGATTTGGTGCTG 58.902 55.000 0.00 0.00 0.00 4.41
457 482 3.375299 GCTCCAGCGAACATGAATAAAGT 59.625 43.478 0.00 0.00 0.00 2.66
551 578 7.745717 CCAGTGGGAGGTATATTCTGAATTTA 58.254 38.462 8.38 2.38 35.59 1.40
652 679 5.824429 TGAAATCAGACAACTCAGCAAAAG 58.176 37.500 0.00 0.00 0.00 2.27
691 718 1.701847 ACCCATGCTGAAGACTTGTCT 59.298 47.619 0.00 0.00 0.00 3.41
698 725 3.202818 ACATTCCATACCCATGCTGAAGA 59.797 43.478 0.00 0.00 0.00 2.87
699 726 3.559069 ACATTCCATACCCATGCTGAAG 58.441 45.455 0.00 0.00 0.00 3.02
709 736 4.150897 TGGCTTGTCTACATTCCATACC 57.849 45.455 1.18 0.00 0.00 2.73
711 738 7.342581 TGTTAATGGCTTGTCTACATTCCATA 58.657 34.615 13.60 1.91 37.35 2.74
714 741 6.699575 ATGTTAATGGCTTGTCTACATTCC 57.300 37.500 0.00 0.00 36.36 3.01
719 746 8.807581 GCAAAAATATGTTAATGGCTTGTCTAC 58.192 33.333 0.00 0.00 0.00 2.59
721 748 7.546667 CAGCAAAAATATGTTAATGGCTTGTCT 59.453 33.333 0.00 0.00 0.00 3.41
722 749 7.545265 TCAGCAAAAATATGTTAATGGCTTGTC 59.455 33.333 0.00 0.00 0.00 3.18
723 750 7.385267 TCAGCAAAAATATGTTAATGGCTTGT 58.615 30.769 0.00 0.00 0.00 3.16
724 751 7.546667 ACTCAGCAAAAATATGTTAATGGCTTG 59.453 33.333 0.00 0.00 0.00 4.01
725 752 7.614494 ACTCAGCAAAAATATGTTAATGGCTT 58.386 30.769 0.00 0.00 0.00 4.35
726 753 7.174107 ACTCAGCAAAAATATGTTAATGGCT 57.826 32.000 0.00 0.00 0.00 4.75
727 754 7.331687 ACAACTCAGCAAAAATATGTTAATGGC 59.668 33.333 0.00 0.00 0.00 4.40
728 755 8.761575 ACAACTCAGCAAAAATATGTTAATGG 57.238 30.769 0.00 0.00 0.00 3.16
729 756 9.630098 AGACAACTCAGCAAAAATATGTTAATG 57.370 29.630 0.00 0.00 0.00 1.90
730 757 9.630098 CAGACAACTCAGCAAAAATATGTTAAT 57.370 29.630 0.00 0.00 0.00 1.40
733 760 7.275888 TCAGACAACTCAGCAAAAATATGTT 57.724 32.000 0.00 0.00 0.00 2.71
734 761 6.882610 TCAGACAACTCAGCAAAAATATGT 57.117 33.333 0.00 0.00 0.00 2.29
735 762 8.752766 AAATCAGACAACTCAGCAAAAATATG 57.247 30.769 0.00 0.00 0.00 1.78
738 765 6.808829 TGAAATCAGACAACTCAGCAAAAAT 58.191 32.000 0.00 0.00 0.00 1.82
739 766 6.206395 TGAAATCAGACAACTCAGCAAAAA 57.794 33.333 0.00 0.00 0.00 1.94
740 767 5.824429 CTGAAATCAGACAACTCAGCAAAA 58.176 37.500 4.37 0.00 46.59 2.44
741 768 5.428496 CTGAAATCAGACAACTCAGCAAA 57.572 39.130 4.37 0.00 46.59 3.68
754 781 5.738909 AGACATGGTAGGTTCTGAAATCAG 58.261 41.667 3.99 3.99 45.08 2.90
755 782 5.762179 AGACATGGTAGGTTCTGAAATCA 57.238 39.130 0.00 0.00 0.00 2.57
756 783 7.278868 CAGTAAGACATGGTAGGTTCTGAAATC 59.721 40.741 0.00 0.00 0.00 2.17
757 784 7.038302 TCAGTAAGACATGGTAGGTTCTGAAAT 60.038 37.037 0.00 0.00 0.00 2.17
758 785 6.269077 TCAGTAAGACATGGTAGGTTCTGAAA 59.731 38.462 0.00 0.00 0.00 2.69
759 786 5.778241 TCAGTAAGACATGGTAGGTTCTGAA 59.222 40.000 0.00 0.00 0.00 3.02
760 787 5.330233 TCAGTAAGACATGGTAGGTTCTGA 58.670 41.667 0.00 0.00 0.00 3.27
761 788 5.661056 TCAGTAAGACATGGTAGGTTCTG 57.339 43.478 0.00 0.00 0.00 3.02
762 789 5.780793 ACTTCAGTAAGACATGGTAGGTTCT 59.219 40.000 0.00 0.00 36.50 3.01
763 790 6.038997 ACTTCAGTAAGACATGGTAGGTTC 57.961 41.667 0.00 0.00 36.50 3.62
764 791 6.435292 AACTTCAGTAAGACATGGTAGGTT 57.565 37.500 0.00 0.00 36.50 3.50
765 792 6.435292 AAACTTCAGTAAGACATGGTAGGT 57.565 37.500 0.00 0.00 36.50 3.08
766 793 7.383687 TGTAAACTTCAGTAAGACATGGTAGG 58.616 38.462 0.00 0.00 36.50 3.18
767 794 8.088981 ACTGTAAACTTCAGTAAGACATGGTAG 58.911 37.037 0.00 0.00 43.17 3.18
768 795 7.959175 ACTGTAAACTTCAGTAAGACATGGTA 58.041 34.615 0.00 0.00 43.17 3.25
769 796 6.827727 ACTGTAAACTTCAGTAAGACATGGT 58.172 36.000 0.00 0.00 43.17 3.55
770 797 7.730364 AACTGTAAACTTCAGTAAGACATGG 57.270 36.000 0.00 0.00 44.03 3.66
771 798 8.070171 CCAAACTGTAAACTTCAGTAAGACATG 58.930 37.037 0.00 0.00 44.03 3.21
772 799 7.255139 GCCAAACTGTAAACTTCAGTAAGACAT 60.255 37.037 0.00 0.00 44.03 3.06
773 800 6.037830 GCCAAACTGTAAACTTCAGTAAGACA 59.962 38.462 0.00 0.00 44.03 3.41
774 801 6.260271 AGCCAAACTGTAAACTTCAGTAAGAC 59.740 38.462 0.00 0.00 44.03 3.01
775 802 6.260050 CAGCCAAACTGTAAACTTCAGTAAGA 59.740 38.462 0.00 0.00 44.03 2.10
776 803 6.430451 CAGCCAAACTGTAAACTTCAGTAAG 58.570 40.000 0.00 0.00 44.03 2.34
827 854 0.594796 CACGGCAGGCAAAACAAGTC 60.595 55.000 0.00 0.00 0.00 3.01
960 1093 5.100259 CAGAGGCAGTTGCTAAATGAAATG 58.900 41.667 3.88 0.00 41.70 2.32
1252 1388 8.731275 TGAAAACATAACGATTCATGAGGTAT 57.269 30.769 0.00 0.00 0.00 2.73
1464 1600 5.313712 ACATTCGTATTATTAGGGGCCAAG 58.686 41.667 4.39 0.00 0.00 3.61
1477 1613 6.238484 GCCTGCAGAGAATTAACATTCGTATT 60.238 38.462 17.39 0.00 43.38 1.89
1678 1822 6.531594 GCAAGTTCTCCAAATTACTAATTGCC 59.468 38.462 0.00 0.00 0.00 4.52
1686 1830 5.175673 GCAACAAGCAAGTTCTCCAAATTAC 59.824 40.000 0.00 0.00 44.79 1.89
1820 1964 0.541392 ATAGGCCATTGCTCGTCACA 59.459 50.000 5.01 0.00 37.74 3.58
1852 1996 1.818060 CAGAGAGAGCCATAGGATCCG 59.182 57.143 5.98 0.00 39.17 4.18
1865 2009 3.382865 CGGAAGATGGTTCATCAGAGAGA 59.617 47.826 10.08 0.00 42.72 3.10
1873 2017 2.571653 TCCAAGTCGGAAGATGGTTCAT 59.428 45.455 5.27 0.00 42.52 2.57
1897 2041 1.895798 TGCCATCCGATCCATAGAGAC 59.104 52.381 0.00 0.00 0.00 3.36
1904 2048 0.105709 TAGGTCTGCCATCCGATCCA 60.106 55.000 0.00 0.00 37.19 3.41
1929 2073 0.539438 GTGGGTTTGCACAGGATGGA 60.539 55.000 0.00 0.00 43.62 3.41
1976 2120 7.224753 GTCTTCTTAGGATCAACATTTGCGATA 59.775 37.037 0.00 0.00 0.00 2.92
1979 2123 5.122239 TGTCTTCTTAGGATCAACATTTGCG 59.878 40.000 0.00 0.00 0.00 4.85
2007 2151 3.797039 TGTATGAAAGAGGGATTGCTCG 58.203 45.455 0.00 0.00 0.00 5.03
2032 2176 1.966451 CGGTGGGGAGTGTTCTTGC 60.966 63.158 0.00 0.00 0.00 4.01
2046 2190 2.036958 TCAGGTTATCATTGCCGGTG 57.963 50.000 1.90 0.00 0.00 4.94
2058 2202 6.472887 AGCAAAGTAGCAAACTATCAGGTTA 58.527 36.000 0.00 0.00 37.50 2.85
2090 2234 7.445096 TGCTGTCATCAAAGAAGATCTACAAAA 59.555 33.333 0.00 0.00 0.00 2.44
2127 2271 2.046314 GCGGCCTTTCCTGTAGCA 60.046 61.111 0.00 0.00 0.00 3.49
2142 2286 2.281070 ACAGTGTGGAAGCCTGCG 60.281 61.111 0.00 0.00 0.00 5.18
2157 2301 3.122780 CGTGACGCAATCTTACAATCACA 59.877 43.478 0.00 0.00 35.76 3.58
2266 2410 4.021925 AGCCCCTGGAACGAGTGC 62.022 66.667 0.00 0.00 0.00 4.40
2435 2579 7.607607 CCAAACATTCCATTCTCCGATGATATA 59.392 37.037 0.00 0.00 0.00 0.86
2436 2580 6.432162 CCAAACATTCCATTCTCCGATGATAT 59.568 38.462 0.00 0.00 0.00 1.63
2437 2581 5.764686 CCAAACATTCCATTCTCCGATGATA 59.235 40.000 0.00 0.00 0.00 2.15
2438 2582 4.581824 CCAAACATTCCATTCTCCGATGAT 59.418 41.667 0.00 0.00 0.00 2.45
2439 2583 3.947196 CCAAACATTCCATTCTCCGATGA 59.053 43.478 0.00 0.00 0.00 2.92
2459 2603 4.473196 TCTTCAGCATACTATTTCCACCCA 59.527 41.667 0.00 0.00 0.00 4.51
2460 2604 5.036117 TCTTCAGCATACTATTTCCACCC 57.964 43.478 0.00 0.00 0.00 4.61
2461 2605 6.016777 CCAATCTTCAGCATACTATTTCCACC 60.017 42.308 0.00 0.00 0.00 4.61
2462 2606 6.767902 TCCAATCTTCAGCATACTATTTCCAC 59.232 38.462 0.00 0.00 0.00 4.02
2463 2607 6.899089 TCCAATCTTCAGCATACTATTTCCA 58.101 36.000 0.00 0.00 0.00 3.53
2464 2608 7.992754 ATCCAATCTTCAGCATACTATTTCC 57.007 36.000 0.00 0.00 0.00 3.13
2465 2609 8.651588 CGTATCCAATCTTCAGCATACTATTTC 58.348 37.037 0.00 0.00 0.00 2.17
2467 2611 7.600375 CACGTATCCAATCTTCAGCATACTATT 59.400 37.037 0.00 0.00 0.00 1.73
2468 2612 7.093354 CACGTATCCAATCTTCAGCATACTAT 58.907 38.462 0.00 0.00 0.00 2.12
2469 2613 6.447162 CACGTATCCAATCTTCAGCATACTA 58.553 40.000 0.00 0.00 0.00 1.82
2470 2614 5.292765 CACGTATCCAATCTTCAGCATACT 58.707 41.667 0.00 0.00 0.00 2.12
2471 2615 4.449068 CCACGTATCCAATCTTCAGCATAC 59.551 45.833 0.00 0.00 0.00 2.39
2472 2616 4.343814 TCCACGTATCCAATCTTCAGCATA 59.656 41.667 0.00 0.00 0.00 3.14
2473 2617 3.134623 TCCACGTATCCAATCTTCAGCAT 59.865 43.478 0.00 0.00 0.00 3.79
2474 2618 2.499693 TCCACGTATCCAATCTTCAGCA 59.500 45.455 0.00 0.00 0.00 4.41
2475 2619 3.126831 CTCCACGTATCCAATCTTCAGC 58.873 50.000 0.00 0.00 0.00 4.26
2476 2620 3.384789 TCCTCCACGTATCCAATCTTCAG 59.615 47.826 0.00 0.00 0.00 3.02
2477 2621 3.371034 TCCTCCACGTATCCAATCTTCA 58.629 45.455 0.00 0.00 0.00 3.02
2478 2622 3.385111 ACTCCTCCACGTATCCAATCTTC 59.615 47.826 0.00 0.00 0.00 2.87
2479 2623 3.375699 ACTCCTCCACGTATCCAATCTT 58.624 45.455 0.00 0.00 0.00 2.40
2480 2624 3.033659 ACTCCTCCACGTATCCAATCT 57.966 47.619 0.00 0.00 0.00 2.40
2481 2625 6.585695 TTATACTCCTCCACGTATCCAATC 57.414 41.667 0.00 0.00 0.00 2.67
2482 2626 6.781014 TCTTTATACTCCTCCACGTATCCAAT 59.219 38.462 0.00 0.00 0.00 3.16
2483 2627 6.131264 TCTTTATACTCCTCCACGTATCCAA 58.869 40.000 0.00 0.00 0.00 3.53
2484 2628 5.698104 TCTTTATACTCCTCCACGTATCCA 58.302 41.667 0.00 0.00 0.00 3.41
2485 2629 6.837471 ATCTTTATACTCCTCCACGTATCC 57.163 41.667 0.00 0.00 0.00 2.59
2486 2630 9.228949 TCTTATCTTTATACTCCTCCACGTATC 57.771 37.037 0.00 0.00 0.00 2.24
2487 2631 9.756571 ATCTTATCTTTATACTCCTCCACGTAT 57.243 33.333 0.00 0.00 0.00 3.06
2488 2632 9.011095 CATCTTATCTTTATACTCCTCCACGTA 57.989 37.037 0.00 0.00 0.00 3.57
2489 2633 7.724506 TCATCTTATCTTTATACTCCTCCACGT 59.275 37.037 0.00 0.00 0.00 4.49
2490 2634 8.112016 TCATCTTATCTTTATACTCCTCCACG 57.888 38.462 0.00 0.00 0.00 4.94
2491 2635 9.084533 ACTCATCTTATCTTTATACTCCTCCAC 57.915 37.037 0.00 0.00 0.00 4.02
2492 2636 9.303116 GACTCATCTTATCTTTATACTCCTCCA 57.697 37.037 0.00 0.00 0.00 3.86
2493 2637 8.745590 GGACTCATCTTATCTTTATACTCCTCC 58.254 40.741 0.00 0.00 0.00 4.30
2494 2638 8.455682 CGGACTCATCTTATCTTTATACTCCTC 58.544 40.741 0.00 0.00 0.00 3.71
2495 2639 8.164733 TCGGACTCATCTTATCTTTATACTCCT 58.835 37.037 0.00 0.00 0.00 3.69
2496 2640 8.338072 TCGGACTCATCTTATCTTTATACTCC 57.662 38.462 0.00 0.00 0.00 3.85
2497 2641 9.997482 GATCGGACTCATCTTATCTTTATACTC 57.003 37.037 0.00 0.00 0.00 2.59
2498 2642 9.521841 TGATCGGACTCATCTTATCTTTATACT 57.478 33.333 0.00 0.00 0.00 2.12
2503 2647 8.642432 TGTTATGATCGGACTCATCTTATCTTT 58.358 33.333 6.30 0.00 37.13 2.52
2504 2648 8.183104 TGTTATGATCGGACTCATCTTATCTT 57.817 34.615 6.30 0.00 37.13 2.40
2505 2649 7.767250 TGTTATGATCGGACTCATCTTATCT 57.233 36.000 6.30 0.00 37.13 1.98
2506 2650 8.465999 AGATGTTATGATCGGACTCATCTTATC 58.534 37.037 11.61 8.23 37.74 1.75
2507 2651 8.359875 AGATGTTATGATCGGACTCATCTTAT 57.640 34.615 11.61 2.07 37.74 1.73
2508 2652 7.767250 AGATGTTATGATCGGACTCATCTTA 57.233 36.000 11.61 0.00 37.74 2.10
2509 2653 6.662865 AGATGTTATGATCGGACTCATCTT 57.337 37.500 11.61 1.97 37.74 2.40
2510 2654 6.717084 TGTAGATGTTATGATCGGACTCATCT 59.283 38.462 17.51 17.51 41.74 2.90
2511 2655 6.914259 TGTAGATGTTATGATCGGACTCATC 58.086 40.000 6.30 8.58 37.13 2.92
2512 2656 6.901081 TGTAGATGTTATGATCGGACTCAT 57.099 37.500 7.66 7.66 39.22 2.90
2513 2657 6.901081 ATGTAGATGTTATGATCGGACTCA 57.099 37.500 0.00 0.00 0.00 3.41
2514 2658 6.090088 GCAATGTAGATGTTATGATCGGACTC 59.910 42.308 0.00 0.00 0.00 3.36
2515 2659 5.928839 GCAATGTAGATGTTATGATCGGACT 59.071 40.000 0.00 0.00 0.00 3.85
2516 2660 5.928839 AGCAATGTAGATGTTATGATCGGAC 59.071 40.000 0.00 0.00 0.00 4.79
2517 2661 6.101650 AGCAATGTAGATGTTATGATCGGA 57.898 37.500 0.00 0.00 0.00 4.55
2518 2662 7.315890 TCTAGCAATGTAGATGTTATGATCGG 58.684 38.462 0.00 0.00 0.00 4.18
2519 2663 8.805688 CATCTAGCAATGTAGATGTTATGATCG 58.194 37.037 17.12 0.00 46.23 3.69
2546 2690 5.380043 AGGGAGTATAATGCAATGGAAGTG 58.620 41.667 0.00 0.00 33.24 3.16
2547 2691 5.456763 GGAGGGAGTATAATGCAATGGAAGT 60.457 44.000 0.00 0.00 0.00 3.01
2548 2692 5.006386 GGAGGGAGTATAATGCAATGGAAG 58.994 45.833 0.00 0.00 0.00 3.46
2549 2693 4.504864 CGGAGGGAGTATAATGCAATGGAA 60.505 45.833 0.00 0.00 0.00 3.53
2550 2694 3.007940 CGGAGGGAGTATAATGCAATGGA 59.992 47.826 0.00 0.00 0.00 3.41
2551 2695 3.244561 ACGGAGGGAGTATAATGCAATGG 60.245 47.826 0.00 0.00 0.00 3.16
2552 2696 4.008074 ACGGAGGGAGTATAATGCAATG 57.992 45.455 0.00 0.00 0.00 2.82
2553 2697 4.505039 GGAACGGAGGGAGTATAATGCAAT 60.505 45.833 0.00 0.00 0.00 3.56
2554 2698 3.181458 GGAACGGAGGGAGTATAATGCAA 60.181 47.826 0.00 0.00 0.00 4.08
2555 2699 2.367567 GGAACGGAGGGAGTATAATGCA 59.632 50.000 0.00 0.00 0.00 3.96
2556 2700 2.633481 AGGAACGGAGGGAGTATAATGC 59.367 50.000 0.00 0.00 0.00 3.56
2557 2701 6.415206 TTTAGGAACGGAGGGAGTATAATG 57.585 41.667 0.00 0.00 0.00 1.90
2558 2702 8.912614 ATATTTAGGAACGGAGGGAGTATAAT 57.087 34.615 0.00 0.00 0.00 1.28
2559 2703 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
2560 2704 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
2561 2705 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2562 2706 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2563 2707 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2564 2708 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2565 2709 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2566 2710 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2567 2711 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2628 2772 9.890629 AAATGAGTGCACTCTAAAATATGTCTA 57.109 29.630 38.81 19.92 43.25 2.59
2629 2773 8.798859 AAATGAGTGCACTCTAAAATATGTCT 57.201 30.769 38.81 12.81 43.25 3.41
2630 2774 9.282247 CAAAATGAGTGCACTCTAAAATATGTC 57.718 33.333 38.81 16.19 43.25 3.06
2631 2775 7.756722 GCAAAATGAGTGCACTCTAAAATATGT 59.243 33.333 38.81 20.60 43.25 2.29
2632 2776 7.972277 AGCAAAATGAGTGCACTCTAAAATATG 59.028 33.333 38.81 28.06 44.74 1.78
2633 2777 8.059798 AGCAAAATGAGTGCACTCTAAAATAT 57.940 30.769 38.81 24.29 44.74 1.28
2634 2778 7.362056 GGAGCAAAATGAGTGCACTCTAAAATA 60.362 37.037 38.81 23.25 44.74 1.40
2635 2779 6.336842 AGCAAAATGAGTGCACTCTAAAAT 57.663 33.333 38.81 25.27 44.74 1.82
2636 2780 5.278463 GGAGCAAAATGAGTGCACTCTAAAA 60.278 40.000 38.81 24.27 44.74 1.52
2637 2781 4.216257 GGAGCAAAATGAGTGCACTCTAAA 59.784 41.667 38.81 24.61 44.74 1.85
2638 2782 3.753272 GGAGCAAAATGAGTGCACTCTAA 59.247 43.478 38.81 25.28 44.74 2.10
2639 2783 3.338249 GGAGCAAAATGAGTGCACTCTA 58.662 45.455 38.81 27.86 44.74 2.43
2640 2784 2.157738 GGAGCAAAATGAGTGCACTCT 58.842 47.619 38.81 25.24 44.74 3.24
2641 2785 1.135859 CGGAGCAAAATGAGTGCACTC 60.136 52.381 35.04 35.04 44.74 3.51
2642 2786 0.877071 CGGAGCAAAATGAGTGCACT 59.123 50.000 21.88 21.88 44.74 4.40
2643 2787 0.593128 ACGGAGCAAAATGAGTGCAC 59.407 50.000 9.40 9.40 44.74 4.57
2644 2788 2.177394 TACGGAGCAAAATGAGTGCA 57.823 45.000 0.00 0.00 44.74 4.57
2645 2789 2.420022 ACATACGGAGCAAAATGAGTGC 59.580 45.455 0.00 0.00 42.55 4.40
2646 2790 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2647 2791 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2648 2792 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2649 2793 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2650 2794 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2651 2795 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2652 2796 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2653 2797 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
2654 2798 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
2655 2799 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
2656 2800 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
2657 2801 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
2658 2802 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
2669 2813 7.861629 AGTATTTTGACAGATTCCACTATGGA 58.138 34.615 0.00 0.00 46.61 3.41
2670 2814 8.400947 CAAGTATTTTGACAGATTCCACTATGG 58.599 37.037 0.00 0.00 39.43 2.74
2671 2815 8.950210 ACAAGTATTTTGACAGATTCCACTATG 58.050 33.333 0.00 0.00 0.00 2.23
2674 2818 9.520515 AATACAAGTATTTTGACAGATTCCACT 57.479 29.630 0.00 0.00 32.21 4.00
2682 2826 9.755064 CGTTCCTAAATACAAGTATTTTGACAG 57.245 33.333 19.71 12.46 41.49 3.51
2683 2827 8.723311 CCGTTCCTAAATACAAGTATTTTGACA 58.277 33.333 19.71 8.33 41.49 3.58
2684 2828 8.938906 TCCGTTCCTAAATACAAGTATTTTGAC 58.061 33.333 19.71 12.94 41.49 3.18
2685 2829 9.158233 CTCCGTTCCTAAATACAAGTATTTTGA 57.842 33.333 19.71 14.71 41.49 2.69
2686 2830 8.395633 CCTCCGTTCCTAAATACAAGTATTTTG 58.604 37.037 19.71 17.42 41.49 2.44
2687 2831 7.066645 GCCTCCGTTCCTAAATACAAGTATTTT 59.933 37.037 19.71 7.75 41.49 1.82
2688 2832 6.541278 GCCTCCGTTCCTAAATACAAGTATTT 59.459 38.462 18.81 18.81 44.95 1.40
2689 2833 6.053650 GCCTCCGTTCCTAAATACAAGTATT 58.946 40.000 0.00 0.00 37.36 1.89
2690 2834 5.129815 TGCCTCCGTTCCTAAATACAAGTAT 59.870 40.000 0.00 0.00 0.00 2.12
2691 2835 4.467082 TGCCTCCGTTCCTAAATACAAGTA 59.533 41.667 0.00 0.00 0.00 2.24
2692 2836 3.262405 TGCCTCCGTTCCTAAATACAAGT 59.738 43.478 0.00 0.00 0.00 3.16
2693 2837 3.869065 TGCCTCCGTTCCTAAATACAAG 58.131 45.455 0.00 0.00 0.00 3.16
2694 2838 3.262405 ACTGCCTCCGTTCCTAAATACAA 59.738 43.478 0.00 0.00 0.00 2.41
2695 2839 2.835764 ACTGCCTCCGTTCCTAAATACA 59.164 45.455 0.00 0.00 0.00 2.29
2696 2840 3.538634 ACTGCCTCCGTTCCTAAATAC 57.461 47.619 0.00 0.00 0.00 1.89
2697 2841 6.552350 ACTTATACTGCCTCCGTTCCTAAATA 59.448 38.462 0.00 0.00 0.00 1.40
2698 2842 5.365895 ACTTATACTGCCTCCGTTCCTAAAT 59.634 40.000 0.00 0.00 0.00 1.40
2699 2843 4.713321 ACTTATACTGCCTCCGTTCCTAAA 59.287 41.667 0.00 0.00 0.00 1.85
2700 2844 4.284178 ACTTATACTGCCTCCGTTCCTAA 58.716 43.478 0.00 0.00 0.00 2.69
2701 2845 3.907221 ACTTATACTGCCTCCGTTCCTA 58.093 45.455 0.00 0.00 0.00 2.94
2702 2846 2.748388 ACTTATACTGCCTCCGTTCCT 58.252 47.619 0.00 0.00 0.00 3.36
2703 2847 3.538634 AACTTATACTGCCTCCGTTCC 57.461 47.619 0.00 0.00 0.00 3.62
2704 2848 4.501071 TGAAACTTATACTGCCTCCGTTC 58.499 43.478 0.00 0.00 0.00 3.95
2705 2849 4.546829 TGAAACTTATACTGCCTCCGTT 57.453 40.909 0.00 0.00 0.00 4.44
2706 2850 4.504858 CTTGAAACTTATACTGCCTCCGT 58.495 43.478 0.00 0.00 0.00 4.69
2707 2851 3.871594 CCTTGAAACTTATACTGCCTCCG 59.128 47.826 0.00 0.00 0.00 4.63
2708 2852 5.099042 TCCTTGAAACTTATACTGCCTCC 57.901 43.478 0.00 0.00 0.00 4.30
2709 2853 7.121315 ACATTTCCTTGAAACTTATACTGCCTC 59.879 37.037 0.00 0.00 34.23 4.70
2710 2854 6.948309 ACATTTCCTTGAAACTTATACTGCCT 59.052 34.615 0.00 0.00 34.23 4.75
2711 2855 7.158099 ACATTTCCTTGAAACTTATACTGCC 57.842 36.000 0.00 0.00 34.23 4.85
2712 2856 8.947115 ACTACATTTCCTTGAAACTTATACTGC 58.053 33.333 0.00 0.00 34.23 4.40
2714 2858 9.449719 CCACTACATTTCCTTGAAACTTATACT 57.550 33.333 0.00 0.00 34.23 2.12
2715 2859 9.444600 TCCACTACATTTCCTTGAAACTTATAC 57.555 33.333 0.00 0.00 34.23 1.47
2717 2861 8.934023 TTCCACTACATTTCCTTGAAACTTAT 57.066 30.769 0.00 0.00 34.23 1.73
2718 2862 8.754991 TTTCCACTACATTTCCTTGAAACTTA 57.245 30.769 0.00 0.00 34.23 2.24
2719 2863 7.654022 TTTCCACTACATTTCCTTGAAACTT 57.346 32.000 0.00 0.00 34.23 2.66
2720 2864 7.654022 TTTTCCACTACATTTCCTTGAAACT 57.346 32.000 0.00 0.00 34.23 2.66
2721 2865 9.974980 TTATTTTCCACTACATTTCCTTGAAAC 57.025 29.630 0.00 0.00 34.23 2.78
2723 2867 8.303876 GCTTATTTTCCACTACATTTCCTTGAA 58.696 33.333 0.00 0.00 0.00 2.69
2724 2868 7.450014 TGCTTATTTTCCACTACATTTCCTTGA 59.550 33.333 0.00 0.00 0.00 3.02
2725 2869 7.601856 TGCTTATTTTCCACTACATTTCCTTG 58.398 34.615 0.00 0.00 0.00 3.61
2726 2870 7.775053 TGCTTATTTTCCACTACATTTCCTT 57.225 32.000 0.00 0.00 0.00 3.36
2727 2871 7.615365 TGATGCTTATTTTCCACTACATTTCCT 59.385 33.333 0.00 0.00 0.00 3.36
2728 2872 7.771183 TGATGCTTATTTTCCACTACATTTCC 58.229 34.615 0.00 0.00 0.00 3.13
2729 2873 7.433425 GCTGATGCTTATTTTCCACTACATTTC 59.567 37.037 0.00 0.00 36.03 2.17
2730 2874 7.093814 TGCTGATGCTTATTTTCCACTACATTT 60.094 33.333 0.00 0.00 40.48 2.32
2731 2875 6.377996 TGCTGATGCTTATTTTCCACTACATT 59.622 34.615 0.00 0.00 40.48 2.71
2732 2876 5.887598 TGCTGATGCTTATTTTCCACTACAT 59.112 36.000 0.00 0.00 40.48 2.29
2733 2877 5.252547 TGCTGATGCTTATTTTCCACTACA 58.747 37.500 0.00 0.00 40.48 2.74
2734 2878 5.220931 CCTGCTGATGCTTATTTTCCACTAC 60.221 44.000 0.00 0.00 40.48 2.73
2735 2879 4.883585 CCTGCTGATGCTTATTTTCCACTA 59.116 41.667 0.00 0.00 40.48 2.74
2736 2880 3.698040 CCTGCTGATGCTTATTTTCCACT 59.302 43.478 0.00 0.00 40.48 4.00
2737 2881 3.445096 ACCTGCTGATGCTTATTTTCCAC 59.555 43.478 0.00 0.00 40.48 4.02
2738 2882 3.444742 CACCTGCTGATGCTTATTTTCCA 59.555 43.478 0.00 0.00 40.48 3.53
2739 2883 3.736126 GCACCTGCTGATGCTTATTTTCC 60.736 47.826 2.03 0.00 38.84 3.13
2740 2884 3.119388 TGCACCTGCTGATGCTTATTTTC 60.119 43.478 11.63 0.00 42.55 2.29
2741 2885 2.827322 TGCACCTGCTGATGCTTATTTT 59.173 40.909 11.63 0.00 42.55 1.82
2742 2886 2.449464 TGCACCTGCTGATGCTTATTT 58.551 42.857 11.63 0.00 42.55 1.40
2743 2887 2.133281 TGCACCTGCTGATGCTTATT 57.867 45.000 11.63 0.00 42.55 1.40
2744 2888 2.359981 ATGCACCTGCTGATGCTTAT 57.640 45.000 11.63 0.00 42.55 1.73
2745 2889 3.497103 ATATGCACCTGCTGATGCTTA 57.503 42.857 11.63 9.56 42.55 3.09
2746 2890 2.359981 ATATGCACCTGCTGATGCTT 57.640 45.000 11.63 7.51 42.55 3.91
2747 2891 2.359981 AATATGCACCTGCTGATGCT 57.640 45.000 11.63 0.00 42.55 3.79
2748 2892 3.144506 ACTAATATGCACCTGCTGATGC 58.855 45.455 2.33 2.33 42.66 3.91
2749 2893 6.404708 AGATACTAATATGCACCTGCTGATG 58.595 40.000 0.00 0.00 42.66 3.07
2750 2894 6.617782 AGATACTAATATGCACCTGCTGAT 57.382 37.500 0.00 0.00 42.66 2.90
2751 2895 6.721668 AGTAGATACTAATATGCACCTGCTGA 59.278 38.462 0.00 0.00 37.01 4.26
2752 2896 6.810676 CAGTAGATACTAATATGCACCTGCTG 59.189 42.308 0.00 0.00 37.01 4.41
2753 2897 6.573289 GCAGTAGATACTAATATGCACCTGCT 60.573 42.308 0.00 0.00 37.01 4.24
2754 2898 5.578727 GCAGTAGATACTAATATGCACCTGC 59.421 44.000 0.00 0.00 36.77 4.85
2755 2899 6.929625 AGCAGTAGATACTAATATGCACCTG 58.070 40.000 0.00 0.00 34.13 4.00
2756 2900 7.122948 GGTAGCAGTAGATACTAATATGCACCT 59.877 40.741 0.00 0.00 36.85 4.00
2757 2901 7.093902 TGGTAGCAGTAGATACTAATATGCACC 60.094 40.741 0.00 4.03 36.85 5.01
2758 2902 7.827701 TGGTAGCAGTAGATACTAATATGCAC 58.172 38.462 0.00 0.00 36.85 4.57
2759 2903 8.417273 TTGGTAGCAGTAGATACTAATATGCA 57.583 34.615 0.00 0.00 33.09 3.96
2760 2904 7.489757 GCTTGGTAGCAGTAGATACTAATATGC 59.510 40.741 0.00 0.00 46.95 3.14
2761 2905 8.918961 GCTTGGTAGCAGTAGATACTAATATG 57.081 38.462 0.00 0.00 46.95 1.78
2778 2922 7.936847 TGTTAAATATAGGTCCATGCTTGGTAG 59.063 37.037 17.54 0.00 44.06 3.18
2797 2941 5.646360 CGGACAGTGGGAGTATTTGTTAAAT 59.354 40.000 0.00 0.00 34.90 1.40
2799 2943 4.283978 TCGGACAGTGGGAGTATTTGTTAA 59.716 41.667 0.00 0.00 0.00 2.01
2800 2944 3.833650 TCGGACAGTGGGAGTATTTGTTA 59.166 43.478 0.00 0.00 0.00 2.41
2801 2945 2.635915 TCGGACAGTGGGAGTATTTGTT 59.364 45.455 0.00 0.00 0.00 2.83
2803 2947 3.328382 TTCGGACAGTGGGAGTATTTG 57.672 47.619 0.00 0.00 0.00 2.32
2827 3046 6.209457 TTGAGAGACAAGCTTGGGACAAGT 62.209 45.833 29.18 7.31 37.48 3.16
2834 3053 4.321718 TGAGAATTGAGAGACAAGCTTGG 58.678 43.478 29.18 12.28 42.02 3.61
2844 3063 8.905660 AGATACATCCATTTGAGAATTGAGAG 57.094 34.615 0.00 0.00 0.00 3.20
2845 3064 9.993454 CTAGATACATCCATTTGAGAATTGAGA 57.007 33.333 0.00 0.00 0.00 3.27
2846 3065 8.719648 GCTAGATACATCCATTTGAGAATTGAG 58.280 37.037 0.00 0.00 0.00 3.02
2847 3066 8.212995 TGCTAGATACATCCATTTGAGAATTGA 58.787 33.333 0.00 0.00 0.00 2.57
2848 3067 8.288208 GTGCTAGATACATCCATTTGAGAATTG 58.712 37.037 0.00 0.00 0.00 2.32
2849 3068 8.216423 AGTGCTAGATACATCCATTTGAGAATT 58.784 33.333 0.00 0.00 0.00 2.17
2850 3069 7.743749 AGTGCTAGATACATCCATTTGAGAAT 58.256 34.615 0.00 0.00 0.00 2.40
2851 3070 7.129457 AGTGCTAGATACATCCATTTGAGAA 57.871 36.000 0.00 0.00 0.00 2.87
2852 3071 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
2888 3107 9.453572 AAAGCTTGTCTCTCAAATGAATGTATA 57.546 29.630 0.00 0.00 35.48 1.47
2916 3135 3.468071 TGCTACTACTCCCTCCTTCAA 57.532 47.619 0.00 0.00 0.00 2.69
2917 3136 3.689872 ATGCTACTACTCCCTCCTTCA 57.310 47.619 0.00 0.00 0.00 3.02
2920 3139 3.406512 ACAATGCTACTACTCCCTCCT 57.593 47.619 0.00 0.00 0.00 3.69
2928 3147 5.368989 AGGCCAAGAATACAATGCTACTAC 58.631 41.667 5.01 0.00 0.00 2.73
2929 3148 5.630415 AGGCCAAGAATACAATGCTACTA 57.370 39.130 5.01 0.00 0.00 1.82
2930 3149 4.510167 AGGCCAAGAATACAATGCTACT 57.490 40.909 5.01 0.00 0.00 2.57
2931 3150 4.640201 TGAAGGCCAAGAATACAATGCTAC 59.360 41.667 5.01 0.00 0.00 3.58
2932 3151 4.854173 TGAAGGCCAAGAATACAATGCTA 58.146 39.130 5.01 0.00 0.00 3.49
2933 3152 3.700538 TGAAGGCCAAGAATACAATGCT 58.299 40.909 5.01 0.00 0.00 3.79
2934 3153 4.660789 ATGAAGGCCAAGAATACAATGC 57.339 40.909 5.01 0.00 0.00 3.56
2935 3154 5.751680 CGTATGAAGGCCAAGAATACAATG 58.248 41.667 5.01 0.00 0.00 2.82
2936 3155 4.275936 GCGTATGAAGGCCAAGAATACAAT 59.724 41.667 5.01 0.00 0.00 2.71
2937 3156 3.625764 GCGTATGAAGGCCAAGAATACAA 59.374 43.478 5.01 0.00 0.00 2.41
2938 3157 3.202906 GCGTATGAAGGCCAAGAATACA 58.797 45.455 5.01 0.00 0.00 2.29
2939 3158 3.879932 GCGTATGAAGGCCAAGAATAC 57.120 47.619 5.01 6.67 0.00 1.89
2948 3167 1.669211 GGAGTATCGGCGTATGAAGGC 60.669 57.143 6.85 0.00 34.37 4.35
2949 3168 1.887198 AGGAGTATCGGCGTATGAAGG 59.113 52.381 6.85 0.00 34.37 3.46
2950 3169 2.552743 TGAGGAGTATCGGCGTATGAAG 59.447 50.000 6.85 0.00 34.37 3.02
2951 3170 2.552743 CTGAGGAGTATCGGCGTATGAA 59.447 50.000 6.85 0.00 34.37 2.57
2952 3171 2.152016 CTGAGGAGTATCGGCGTATGA 58.848 52.381 6.85 0.00 34.37 2.15
2953 3172 2.152016 TCTGAGGAGTATCGGCGTATG 58.848 52.381 6.85 0.00 34.37 2.39
2954 3173 2.563261 TCTGAGGAGTATCGGCGTAT 57.437 50.000 6.85 1.67 34.37 3.06
2955 3174 2.336945 TTCTGAGGAGTATCGGCGTA 57.663 50.000 6.85 0.00 34.37 4.42
2956 3175 1.471119 TTTCTGAGGAGTATCGGCGT 58.529 50.000 6.85 0.00 34.37 5.68
2957 3176 2.398498 CATTTCTGAGGAGTATCGGCG 58.602 52.381 0.00 0.00 34.37 6.46
2958 3177 2.139118 GCATTTCTGAGGAGTATCGGC 58.861 52.381 0.00 0.00 34.37 5.54
2959 3178 3.388308 CAGCATTTCTGAGGAGTATCGG 58.612 50.000 0.00 0.00 45.72 4.18
2960 3179 2.799412 GCAGCATTTCTGAGGAGTATCG 59.201 50.000 0.00 0.00 45.72 2.92
2961 3180 3.137533 GGCAGCATTTCTGAGGAGTATC 58.862 50.000 0.00 0.00 45.72 2.24
2962 3181 2.776536 AGGCAGCATTTCTGAGGAGTAT 59.223 45.455 0.00 0.00 45.72 2.12
2963 3182 2.169352 GAGGCAGCATTTCTGAGGAGTA 59.831 50.000 0.00 0.00 45.72 2.59
2964 3183 0.990374 AGGCAGCATTTCTGAGGAGT 59.010 50.000 0.00 0.00 45.72 3.85
2965 3184 1.209990 AGAGGCAGCATTTCTGAGGAG 59.790 52.381 0.00 0.00 45.72 3.69
2966 3185 1.209019 GAGAGGCAGCATTTCTGAGGA 59.791 52.381 0.00 0.00 45.72 3.71
2967 3186 1.666054 GAGAGGCAGCATTTCTGAGG 58.334 55.000 0.00 0.00 45.72 3.86
2968 3187 1.209990 AGGAGAGGCAGCATTTCTGAG 59.790 52.381 0.00 0.00 45.72 3.35
2969 3188 1.065636 CAGGAGAGGCAGCATTTCTGA 60.066 52.381 0.00 0.00 45.72 3.27
2988 3207 3.458857 TGGTACCTTTTTCACCCTGTACA 59.541 43.478 14.36 0.00 32.30 2.90
2991 3210 3.673543 TTGGTACCTTTTTCACCCTGT 57.326 42.857 14.36 0.00 0.00 4.00
2992 3211 3.958147 ACTTTGGTACCTTTTTCACCCTG 59.042 43.478 14.36 0.00 0.00 4.45
3036 3255 9.875708 ACTTTAAGGTATATTGCCCATATGAAA 57.124 29.630 3.65 0.00 30.09 2.69
3037 3256 9.295825 CACTTTAAGGTATATTGCCCATATGAA 57.704 33.333 3.65 0.00 30.09 2.57
3038 3257 8.444783 ACACTTTAAGGTATATTGCCCATATGA 58.555 33.333 3.65 0.00 30.09 2.15
3044 3263 6.072119 GCCATACACTTTAAGGTATATTGCCC 60.072 42.308 1.84 0.00 0.00 5.36
3045 3264 6.715264 AGCCATACACTTTAAGGTATATTGCC 59.285 38.462 8.03 0.00 0.00 4.52
3046 3265 7.228706 ACAGCCATACACTTTAAGGTATATTGC 59.771 37.037 4.48 4.48 0.00 3.56
3047 3266 8.677148 ACAGCCATACACTTTAAGGTATATTG 57.323 34.615 0.00 4.23 0.00 1.90
3049 3268 9.944376 CATACAGCCATACACTTTAAGGTATAT 57.056 33.333 0.00 0.00 0.00 0.86
3050 3269 8.372459 CCATACAGCCATACACTTTAAGGTATA 58.628 37.037 0.00 0.00 0.00 1.47
3051 3270 7.224297 CCATACAGCCATACACTTTAAGGTAT 58.776 38.462 0.00 0.00 0.00 2.73
3052 3271 6.408776 CCCATACAGCCATACACTTTAAGGTA 60.409 42.308 0.00 0.00 0.00 3.08
3053 3272 5.437060 CCATACAGCCATACACTTTAAGGT 58.563 41.667 0.00 0.00 0.00 3.50
3054 3273 4.821805 CCCATACAGCCATACACTTTAAGG 59.178 45.833 0.00 0.00 0.00 2.69
3055 3274 4.275936 GCCCATACAGCCATACACTTTAAG 59.724 45.833 0.00 0.00 0.00 1.85
3056 3275 4.204012 GCCCATACAGCCATACACTTTAA 58.796 43.478 0.00 0.00 0.00 1.52
3057 3276 3.201045 TGCCCATACAGCCATACACTTTA 59.799 43.478 0.00 0.00 0.00 1.85
3058 3277 2.025416 TGCCCATACAGCCATACACTTT 60.025 45.455 0.00 0.00 0.00 2.66
3059 3278 1.563879 TGCCCATACAGCCATACACTT 59.436 47.619 0.00 0.00 0.00 3.16
3060 3279 1.212375 TGCCCATACAGCCATACACT 58.788 50.000 0.00 0.00 0.00 3.55
3061 3280 2.051334 TTGCCCATACAGCCATACAC 57.949 50.000 0.00 0.00 0.00 2.90
3062 3281 3.650461 TCTATTGCCCATACAGCCATACA 59.350 43.478 0.00 0.00 0.00 2.29
3063 3282 4.003648 GTCTATTGCCCATACAGCCATAC 58.996 47.826 0.00 0.00 0.00 2.39
3064 3283 3.909995 AGTCTATTGCCCATACAGCCATA 59.090 43.478 0.00 0.00 0.00 2.74
3065 3284 2.713167 AGTCTATTGCCCATACAGCCAT 59.287 45.455 0.00 0.00 0.00 4.40
3066 3285 2.126882 AGTCTATTGCCCATACAGCCA 58.873 47.619 0.00 0.00 0.00 4.75
3067 3286 2.880890 CAAGTCTATTGCCCATACAGCC 59.119 50.000 0.00 0.00 0.00 4.85
3068 3287 3.808728 TCAAGTCTATTGCCCATACAGC 58.191 45.455 0.00 0.00 0.00 4.40
3069 3288 5.824624 ACATTCAAGTCTATTGCCCATACAG 59.175 40.000 0.00 0.00 0.00 2.74
3070 3289 5.754782 ACATTCAAGTCTATTGCCCATACA 58.245 37.500 0.00 0.00 0.00 2.29
3071 3290 5.822519 TGACATTCAAGTCTATTGCCCATAC 59.177 40.000 0.00 0.00 39.27 2.39
3106 3325 4.331108 AGTGGGTTTTGCAACAAACAAAT 58.669 34.783 14.30 0.00 36.91 2.32
3142 3361 5.506686 TTACATGCAAGCAAGTACACAAA 57.493 34.783 9.37 0.00 31.15 2.83
3172 3392 2.884639 ACCGTCAAGGGATTTGTTTCAG 59.115 45.455 0.00 0.00 46.96 3.02
3187 3407 2.553466 CCCATGTTCCCTTTAACCGTCA 60.553 50.000 0.00 0.00 0.00 4.35
3188 3408 2.089201 CCCATGTTCCCTTTAACCGTC 58.911 52.381 0.00 0.00 0.00 4.79
3221 3441 5.011125 ACTTTTCTTGACGGAGAGAAGATGA 59.989 40.000 17.05 0.00 39.15 2.92
3262 3482 4.624024 GTCATCGAAGTGTTGATTTACCGA 59.376 41.667 0.00 0.00 0.00 4.69
3263 3483 4.387559 TGTCATCGAAGTGTTGATTTACCG 59.612 41.667 0.00 0.00 0.00 4.02
3322 3595 5.587844 GCTCTGTATTTGGTCATGTCTCATT 59.412 40.000 0.00 0.00 0.00 2.57
3340 3613 8.335532 TGCAACTATTTGTTAATTAGCTCTGT 57.664 30.769 0.00 0.00 37.07 3.41
3350 3623 5.250200 ACGGGAGATGCAACTATTTGTTAA 58.750 37.500 0.00 0.00 37.07 2.01
3351 3624 4.839121 ACGGGAGATGCAACTATTTGTTA 58.161 39.130 0.00 0.00 37.07 2.41
3352 3625 3.686016 ACGGGAGATGCAACTATTTGTT 58.314 40.909 0.00 0.00 39.92 2.83
3353 3626 3.350219 ACGGGAGATGCAACTATTTGT 57.650 42.857 0.00 0.00 34.90 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.